AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0574060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0574060 MtrunA17_Chr8g0390291 97.826 414 8 1 1 414 1 413 0.0 830
Msa0574060 MtrunA17_Chr8g0390291 98.795 83 1 0 558 640 413 495 1.55e-45 169
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0574060 AT4G32360.1 72.439 410 109 3 7 414 4 411 0.0 601
Msa0574060 AT4G32360.1 52.632 76 32 1 558 633 411 482 9.78e-15 77.8
Msa0574060 AT4G32360.8 72.439 410 109 3 7 414 4 411 0.0 599
Msa0574060 AT4G32360.2 72.022 361 98 2 7 366 4 362 0.0 526
Msa0574060 AT4G32360.7 72.575 299 80 2 118 414 5 303 3.60e-149 436
Msa0574060 AT4G32360.7 52.632 76 32 1 558 633 303 374 6.51e-15 77.4
Msa0574060 AT4G32360.5 71.277 282 79 2 135 414 18 299 1.43e-137 404
Msa0574060 AT4G32360.9 71.277 282 79 2 135 414 12 293 1.69e-137 406
Msa0574060 AT4G32360.9 52.632 76 32 1 558 633 293 364 5.63e-15 77.4
Msa0574060 AT4G32360.6 71.277 282 79 2 135 414 18 299 3.31e-137 406
Msa0574060 AT4G32360.6 52.632 76 32 1 558 633 299 370 6.54e-15 77.4
Msa0574060 AT4G32360.3 70.386 233 68 1 135 366 18 250 9.44e-110 331
Msa0574060 AT4G32360.4 70.386 233 68 1 135 366 18 250 9.44e-110 331

Find 158 sgRNAs with CRISPR-Local

Find 458 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGCTTTCTTTCAATTATT+TGG 0.132478 4_1:+77434491 None:intergenic
AAAAGAGGCTTGGTAGTTTA+AGG 0.175028 4_1:-77434624 Msa0574060:CDS
ATACTACAGGGTAGTTTATT+TGG 0.186560 4_1:-77439509 Msa0574060:intron
ATAGATTGCCTACGCCTTTC+GGG 0.204141 4_1:-77441104 Msa0574060:CDS
TTTGAGAAGACAGTTCTTAA+AGG 0.222287 4_1:-77438512 Msa0574060:intron
TTGTCTTCTCAGAACTTAAA+AGG 0.230978 4_1:-77440219 Msa0574060:intron
ATTGATACAGCTGTAATTCT+TGG 0.257050 4_1:-77440117 Msa0574060:CDS
TGCATATTGGATGCGATATT+GGG 0.259148 4_1:-77435300 Msa0574060:CDS
TAAAATTGGACCTTAGTTTC+AGG 0.262640 4_1:+77441051 None:intergenic
GATAGATTGCCTACGCCTTT+CGG 0.274019 4_1:-77441105 Msa0574060:CDS
ATGCATATTGGATGCGATAT+TGG 0.279426 4_1:-77435301 Msa0574060:CDS
AGACCGTCCCTGCCTGGTTT+TGG 0.292557 4_1:+77434718 None:intergenic
GAATTTGTTTGGTGGTATAA+TGG 0.296116 4_1:-77440180 Msa0574060:CDS
GTTGCGCCACCCTTGAAAAT+TGG 0.303565 4_1:+77440557 None:intergenic
TCCTTTCCTTGCTAGTTTAG+TGG 0.310664 4_1:-77435691 Msa0574060:CDS
TACAAAGAAACTTTCTTGAT+TGG 0.312498 4_1:+77441343 None:intergenic
GGATCAAGATTTCGTCCATC+TGG 0.325395 4_1:+77440153 None:intergenic
TTTGATTCTTGAAAACTATC+TGG 0.326046 4_1:+77438566 None:intergenic
AACACTCGACCTTTATCATT+TGG 0.326962 4_1:+77436343 None:intergenic
AAAGAGCTACGTGAAGTTCT+AGG 0.331388 4_1:-77439448 Msa0574060:intron
GCAGTGCAAGCTGCTTGGGC+TGG 0.333847 4_1:+77439472 None:intergenic
CAGCTGTATCAATGCTCTTC+AGG 0.339337 4_1:+77440127 None:intergenic
AATTTGAATGAACTCAGAAT+TGG 0.345482 4_1:+77435845 None:intergenic
AGAGAGCTAGCTTGCCTTCT+CGG 0.345567 4_1:+77441239 None:intergenic
AATTTGTTTGGTGGTATAAT+GGG 0.352993 4_1:-77440179 Msa0574060:CDS
CTTTAGAAGAGAGCTCTATC+AGG 0.354761 4_1:-77439600 Msa0574060:intron
CAGTTTCTTCAGCACAATAT+AGG 0.355642 4_1:+77436230 None:intergenic
GAATTGGGAATCGAGAAATA+AGG 0.356495 4_1:+77435861 None:intergenic
TGGAGAATCTACCCCGGATC+TGG 0.356637 4_1:+77435758 None:intergenic
GACAGTACTGGCCACGTATC+TGG 0.359280 4_1:-77438542 Msa0574060:CDS
GACAGAAGTCTTGGAATTCC+TGG 0.360873 4_1:-77440324 Msa0574060:CDS
TATCAGCCAGAGAATTTGTT+TGG 0.368879 4_1:-77440191 Msa0574060:CDS
CTTTCACATTACACACTCAT+TGG 0.373306 4_1:-77434472 Msa0574060:three_prime_UTR
GGATAGTTTCATTCAATGAT+TGG 0.375115 4_1:-77434666 Msa0574060:CDS
TTAGTGGACAAGATTATAAT+AGG 0.375250 4_1:-77435675 Msa0574060:CDS
TCAGTTCCGTGTCCCAGATC+CGG 0.382593 4_1:-77435771 Msa0574060:CDS
TTTAATACAAAACAGTATAC+AGG 0.389841 4_1:+77434275 None:intergenic
CAGTTCCGTGTCCCAGATCC+GGG 0.393062 4_1:-77435770 Msa0574060:CDS
TATTTCAGCAGCATGCATAT+TGG 0.394078 4_1:-77435313 Msa0574060:CDS
GAGCAGGTTGTCCTTGCATA+TGG 0.396211 4_1:-77440357 Msa0574060:intron
AAACAAATTGCCGTTGGTAC+TGG 0.400619 4_1:-77437927 Msa0574060:CDS
AAAATTGGACCTTAGTTTCA+GGG 0.410842 4_1:+77441052 None:intergenic
GAATCTTGATGTTTCCATAC+AGG 0.417255 4_1:-77438928 Msa0574060:CDS
AATTGGGAATCGAGAAATAA+GGG 0.421807 4_1:+77435862 None:intergenic
GTATCAATGCTCTTCAGGTC+TGG 0.422431 4_1:+77440132 None:intergenic
CGAGTGTGTGTTGTTGGAAG+TGG 0.422589 4_1:-77441282 Msa0574060:CDS
GACCTTAGTTTCAGGGTGAT+CGG 0.425052 4_1:+77441059 None:intergenic
CCTTTGCGAGTGTGTGTTGT+TGG 0.425734 4_1:-77441288 Msa0574060:CDS
TACAGCTGTAATTCTTGGTC+AGG 0.426936 4_1:-77440112 Msa0574060:intron
GATAGTTTCATTCAATGATT+GGG 0.431725 4_1:-77434665 Msa0574060:CDS
GAACAATGAAGAAGAACTTC+AGG 0.433107 4_1:+77435985 None:intergenic
ACCTTAGTTTCAGGGTGATC+GGG 0.435537 4_1:+77441060 None:intergenic
AGCTGTCAGTAGTTCATTCC+AGG 0.435571 4_1:+77434576 None:intergenic
TCCTCGCGCCGTCGTTTCTC+CGG 0.436614 4_1:-77441416 Msa0574060:five_prime_UTR
ACCCGATCACCCTGAAACTA+AGG 0.439947 4_1:-77441061 Msa0574060:intron
GGTATAGTTCCAAATGATAA+AGG 0.441163 4_1:-77436352 Msa0574060:CDS
CTTGAAAACTATCTGGCTTA+CGG 0.447487 4_1:+77438573 None:intergenic
ATTTGAATGAACTCAGAATT+GGG 0.448999 4_1:+77435846 None:intergenic
TATAAATCAGTACCGGTAGA+TGG 0.453019 4_1:-77437495 Msa0574060:CDS
TCACCTTTCTTATGATCAAA+AGG 0.456555 4_1:+77437468 None:intergenic
TGGTTCAAACCAGCATGTAT+TGG 0.466762 4_1:+77438620 None:intergenic
ATACCACCAAACAAATTCTC+TGG 0.469276 4_1:+77440185 None:intergenic
TGCTACCTCCTCTGCCTCGA+GGG 0.469655 4_1:+77435619 None:intergenic
TGGTCTTGAGGTAGCTGCCT+TGG 0.470004 4_1:+77438640 None:intergenic
TGGCTGAAGAGAGGACCAAC+CGG 0.471966 4_1:-77436268 Msa0574060:CDS
TTAATGTGTACAATGAACTA+TGG 0.473727 4_1:+77434183 None:intergenic
TTCTATCATGCAAAAGATTG+AGG 0.477423 4_1:+77434695 None:intergenic
TACAGGGTAGTTTATTTGGT+TGG 0.478498 4_1:-77439505 Msa0574060:intron
CAGCCGCACCAAAACCAGGC+AGG 0.483499 4_1:-77434726 Msa0574060:CDS
TAAAGTAGACAAAGCATGAC+TGG 0.484133 4_1:+77439618 None:intergenic
TCCTTTCAATGGCAATTACA+TGG 0.484316 4_1:-77435652 Msa0574060:CDS
ATTATAATAGGTCCTTTCAA+TGG 0.488591 4_1:-77435663 Msa0574060:CDS
TCGAGAAATAAGGGTTTAAG+AGG 0.489851 4_1:+77435871 None:intergenic
TCAATTTATACCTCATCAGT+TGG 0.496085 4_1:+77438885 None:intergenic
TTGAGGAGACCGTCCCTGCC+TGG 0.497823 4_1:+77434712 None:intergenic
CTTCTCGGCAGTGTAGCAAC+CGG 0.498236 4_1:+77441254 None:intergenic
CAAGAATCAAAAGACAGTAC+TGG 0.501673 4_1:-77438554 Msa0574060:CDS
GTAGTTTAAGGAACAAGCCT+AGG 0.504331 4_1:-77434612 Msa0574060:CDS
GACTCTGAAGAAAAGAGGCT+TGG 0.504824 4_1:-77434634 Msa0574060:CDS
AGGATGGTTCTTAAGAGCAT+TGG 0.510487 4_1:-77437519 Msa0574060:CDS
GGGTAGTTTATTTGGTTGGA+AGG 0.513038 4_1:-77439501 Msa0574060:CDS
TTTACGACCTACTACAGAGT+TGG 0.513413 4_1:-77439656 Msa0574060:CDS
TAGATCAAACATACTTCTCC+AGG 0.516315 4_1:+77440306 None:intergenic
GATTCTCCACAATATGTCCT+AGG 0.518690 4_1:-77435744 Msa0574060:CDS
TCGGCAGTGTAGCAACCGGC+AGG 0.519508 4_1:+77441258 None:intergenic
AGATAGACTCTGAAGAAAAG+AGG 0.524905 4_1:-77434639 Msa0574060:CDS
GGAGAATCTACCCCGGATCT+GGG 0.527904 4_1:+77435759 None:intergenic
AGGGTGATCGGGTGCAACAC+CGG 0.530755 4_1:+77441071 None:intergenic
GATACTGCAGTTCTTGAAGA+GGG 0.531819 4_1:-77436307 Msa0574060:CDS
GTTTATTTGGTTGGAAGGCG+AGG 0.532816 4_1:-77439496 Msa0574060:CDS
GATCAAGATTTCGTCCATCT+GGG 0.534002 4_1:+77440154 None:intergenic
TAGGTTTGTCGCAACAATCC+CGG 0.534968 4_1:+77436249 None:intergenic
CCTTTCGGGTTGGTTCGCTC+CGG 0.535515 4_1:-77441090 Msa0574060:CDS
GCTGAAAGTGACAGAAGTCT+TGG 0.535620 4_1:-77440333 Msa0574060:CDS
ATGTAGATCAGATTCCTGTA+TGG 0.538195 4_1:+77438914 None:intergenic
GCCATGTAATTGCCATTGAA+AGG 0.538232 4_1:+77435651 None:intergenic
CTTTCTTATGATCAAAAGGC+AGG 0.538569 4_1:+77437472 None:intergenic
CAGCCAGAGAATTTGTTTGG+TGG 0.538936 4_1:-77440188 Msa0574060:CDS
AGCCGCACCAAAACCAGGCA+GGG 0.541976 4_1:-77434725 Msa0574060:CDS
TGGTATAATGGGCACCCAGA+TGG 0.543975 4_1:-77440168 Msa0574060:CDS
GAATTTGAAGATTTAAAATG+CGG 0.548701 4_1:-77437903 Msa0574060:CDS
ATTGCCTACGCCTTTCGGGT+TGG 0.554138 4_1:-77441100 Msa0574060:CDS
ACCAGCATGTATTGGTCTTG+AGG 0.556950 4_1:+77438628 None:intergenic
GTTGTTGGAAGTGGACCTGC+CGG 0.556998 4_1:-77441273 Msa0574060:CDS
ACCGGAGAAACGACGGCGCG+AGG 0.560045 4_1:+77441415 None:intergenic
AATTTGAAGATTTAAAATGC+GGG 0.562542 4_1:-77437902 Msa0574060:intron
AAATCAAACCACCTTTCTCA+AGG 0.563280 4_1:+77434755 None:intergenic
CGGTTGCTACACTGCCGAGA+AGG 0.568299 4_1:-77441253 Msa0574060:intron
TTCAGAAGAGAACACTTGGA+TGG 0.571205 4_1:+77434427 None:intergenic
GGCTGAAGAGAGGACCAACC+GGG 0.573110 4_1:-77436267 Msa0574060:CDS
TTCAAATTCTCCAGTACCAA+CGG 0.574191 4_1:+77437917 None:intergenic
ACATTTCAGAAGAGAACACT+TGG 0.574938 4_1:+77434423 None:intergenic
GCACCAAAACCAGGCAGGGA+CGG 0.578336 4_1:-77434721 Msa0574060:CDS
TCCACTAAACTAGCAAGGAA+AGG 0.579584 4_1:+77435690 None:intergenic
CACTTTCAGCACCATATGCA+AGG 0.580894 4_1:+77440346 None:intergenic
CGAACCAACCCGAAAGGCGT+AGG 0.581574 4_1:+77441096 None:intergenic
ACCTCAAGACCAATACATGC+TGG 0.583916 4_1:-77438629 Msa0574060:CDS
AGATACTGCAGTTCTTGAAG+AGG 0.587424 4_1:-77436308 Msa0574060:CDS
CTACTGACAGCTACCTCAGA+AGG 0.588494 4_1:-77434565 Msa0574060:CDS
ATATTAGAAGACCTTGAGAA+AGG 0.589957 4_1:-77434766 Msa0574060:CDS
CAATTCAGCAAGAGATACGT+TGG 0.593711 4_1:+77440495 None:intergenic
TATGTTGTGTCAGATGTTGA+AGG 0.594344 4_1:-77441157 Msa0574060:intron
TTAGAAGACCTTGAGAAAGG+TGG 0.599900 4_1:-77434763 Msa0574060:CDS
CCTGGAAAACAAATTGCCGT+TGG 0.600357 4_1:-77437933 Msa0574060:CDS
TCAAAAGGCAGGCCATCTAC+CGG 0.600860 4_1:+77437483 None:intergenic
TCTTGTCCACTAAACTAGCA+AGG 0.602505 4_1:+77435685 None:intergenic
ATGCTACCTCCTCTGCCTCG+AGG 0.603211 4_1:+77435618 None:intergenic
CCAACAACACACACTCGCAA+AGG 0.603781 4_1:+77441288 None:intergenic
GCATATTGGATGCGATATTG+GGG 0.607019 4_1:-77435299 Msa0574060:CDS
AACACACCTAGGACATATTG+TGG 0.607300 4_1:+77435738 None:intergenic
GTTGTTGCCAACTCTGTAGT+AGG 0.610643 4_1:+77439649 None:intergenic
CCGGAGCGAACCAACCCGAA+AGG 0.611629 4_1:+77441090 None:intergenic
TAGTTTAAGGAACAAGCCTA+GGG 0.611707 4_1:-77434611 Msa0574060:CDS
ACTTCTTGACGAACACACCT+AGG 0.611726 4_1:+77435727 None:intergenic
AGGGCTTGTATGTATGCGGT+TGG 0.614579 4_1:-77436288 Msa0574060:CDS
AAATCCCCTCGAGGCAGAGG+AGG 0.615958 4_1:-77435624 Msa0574060:CDS
GTTGAGCAATGATATTTGCA+TGG 0.616551 4_1:-77434325 Msa0574060:three_prime_UTR
CAAAGCGCACGCCAGATACG+TGG 0.621087 4_1:+77438531 None:intergenic
CATTGGTTATAAATCAGTAC+CGG 0.623266 4_1:-77437502 Msa0574060:CDS
TTAATACAAAACAGTATACA+GGG 0.625733 4_1:+77434276 None:intergenic
TTTGTCGCAACAATCCCGGT+TGG 0.625777 4_1:+77436253 None:intergenic
GGGGCGTACCGGAGAAACGA+CGG 0.626173 4_1:+77441408 None:intergenic
GCTACCTCCTCTGCCTCGAG+GGG 0.627739 4_1:+77435620 None:intergenic
TCAACAGCCGCACCAAAACC+AGG 0.631949 4_1:-77434730 Msa0574060:CDS
TCTACCCCGGATCTGGGACA+CGG 0.634006 4_1:+77435765 None:intergenic
GGAATGATCAGTTCCTTCTG+AGG 0.638115 4_1:+77434552 None:intergenic
ACATCTAACTCCAACTGATG+AGG 0.640202 4_1:-77438895 Msa0574060:intron
CATTGGTGAGCATATCAACA+AGG 0.644002 4_1:-77434455 Msa0574060:three_prime_UTR
AGTTCCGTGTCCCAGATCCG+GGG 0.648960 4_1:-77435769 Msa0574060:CDS
GTAAAATAACATACTTGACA+TGG 0.653275 4_1:+77435457 None:intergenic
GAAGAGGGCTTGTATGTATG+CGG 0.661642 4_1:-77436292 Msa0574060:CDS
GAGAAAACAAGAGTTTGACT+AGG 0.662678 4_1:+77435798 None:intergenic
AGACAAAACGAAGTTGACGT+TGG 0.668905 4_1:+77438600 None:intergenic
AGAAAATGTAATGTATCACG+TGG 0.669954 4_1:+77434531 None:intergenic
GTATGCGGTTGGCTGAAGAG+AGG 0.679399 4_1:-77436277 Msa0574060:CDS
TGTCAGTAGTTCATTCCAGG+TGG 0.718117 4_1:+77434579 None:intergenic
ATATTGTGGAGAATCTACCC+CGG 0.730645 4_1:+77435752 None:intergenic
ATTGCGCAAGCTGTATCATG+TGG 0.777509 4_1:-77440476 Msa0574060:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTAATGATAATAATAAAAT+TGG + chr4_1:77434538-77434557 None:intergenic 10.0%
!!! TATCATTACTATTTTATTTT+TGG - chr4_1:77434548-77434567 Msa0574060:CDS 10.0%
!!! GATGTTTTTATAATTAAAAA+AGG - chr4_1:77436802-77436821 Msa0574060:intron 10.0%
!! AAAATCTTTGTAATTTAATA+TGG + chr4_1:77437873-77437892 None:intergenic 10.0%
!!! AGTTATTATTTTAACAATTA+AGG + chr4_1:77440600-77440619 None:intergenic 10.0%
!! TTAATTGTTAAAATAATAAC+TGG - chr4_1:77440599-77440618 Msa0574060:intron 10.0%
!! TAAAAGTCTCTATAAAATTA+AGG + chr4_1:77435514-77435533 None:intergenic 15.0%
!!! ATTAATGTTTTCTAGTTAAA+TGG - chr4_1:77435845-77435864 Msa0574060:CDS 15.0%
!!! AAATGGTTTTATTTAATTTC+AGG - chr4_1:77435862-77435881 Msa0574060:CDS 15.0%
!!! AATGGTTTTATTTAATTTCA+GGG - chr4_1:77435863-77435882 Msa0574060:CDS 15.0%
!! TGAATATCAATAAGAATATT+TGG + chr4_1:77436023-77436042 None:intergenic 15.0%
!!! GAATTTAATTTATTAGAACA+TGG - chr4_1:77437101-77437120 Msa0574060:intron 15.0%
!! TGTTAAAAAAGAAAATTAGA+AGG + chr4_1:77437398-77437417 None:intergenic 15.0%
!!! ATTACTCAAATTGATTTTAT+AGG - chr4_1:77437609-77437628 Msa0574060:intron 15.0%
!!! ATCTACAAATTTTGATTTTA+AGG + chr4_1:77438889-77438908 None:intergenic 15.0%
!! CTTATTTATAAACTATTCTA+GGG - chr4_1:77440075-77440094 Msa0574060:intron 15.0%
!!! TGTTATTATTGTTTGGTAAT+GGG - chr4_1:77434909-77434928 Msa0574060:intron 20.0%
!!! ATGGTTTTATTTAATTTCAG+GGG - chr4_1:77435864-77435883 Msa0574060:CDS 20.0%
!! ATTTATCAGTAATATACTAC+AGG - chr4_1:77436050-77436069 Msa0574060:intron 20.0%
!! TTTATCAGTAATATACTACA+GGG - chr4_1:77436051-77436070 Msa0574060:intron 20.0%
!!! CATATTTGCTTGATTATTTT+TGG - chr4_1:77436203-77436222 Msa0574060:intron 20.0%
!!! TTTTTGCTAATATTACTTAC+TGG - chr4_1:77436416-77436435 Msa0574060:intron 20.0%
!! GAAATGTTAATAAATTGAAG+AGG + chr4_1:77437196-77437215 None:intergenic 20.0%
!! AGTTTGGCATAAATTTATTT+CGG - chr4_1:77437447-77437466 Msa0574060:intron 20.0%
!!! GAATTTGAAGATTTAAAATG+CGG - chr4_1:77437669-77437688 Msa0574060:intron 20.0%
!!! AATTTGAAGATTTAAAATGC+GGG - chr4_1:77437670-77437689 Msa0574060:intron 20.0%
!! AAAATCTCTGTGATTTAATA+TGG + chr4_1:77437709-77437728 None:intergenic 20.0%
!! ATCTTTGATTATAATGATAC+CGG + chr4_1:77437773-77437792 None:intergenic 20.0%
!! TTAATCTCTTTACTTTATAC+AGG + chr4_1:77437819-77437838 None:intergenic 20.0%
!! GAACATAAACTTCATATAAA+AGG + chr4_1:77438379-77438398 None:intergenic 20.0%
!!! TTTTTTCAAATTGAGATTAC+AGG - chr4_1:77438607-77438626 Msa0574060:CDS 20.0%
!!! TTTTTCAAATTGAGATTACA+GGG - chr4_1:77438608-77438627 Msa0574060:CDS 20.0%
!! TCAGAGTTAATATATTTGAT+GGG - chr4_1:77439188-77439207 Msa0574060:intron 20.0%
!! AAATACAGATCAAGTTAAAT+GGG + chr4_1:77439520-77439539 None:intergenic 20.0%
!! AAAATACAGATCAAGTTAAA+TGG + chr4_1:77439521-77439540 None:intergenic 20.0%
!!! TAACTTGATCTGTATTTTAA+AGG - chr4_1:77439523-77439542 Msa0574060:intron 20.0%
!! GCTTATTTATAAACTATTCT+AGG - chr4_1:77440074-77440093 Msa0574060:intron 20.0%
!!! TTATAAGATTAGTCTAGATA+AGG - chr4_1:77440166-77440185 Msa0574060:CDS 20.0%
!! AAAGCTTTCTTTCAATTATT+TGG + chr4_1:77441084-77441103 None:intergenic 20.0%
!! TTAATACAAAACAGTATACA+GGG + chr4_1:77441299-77441318 None:intergenic 20.0%
!! TTTAATACAAAACAGTATAC+AGG + chr4_1:77441300-77441319 None:intergenic 20.0%
! TTGCTATCTGACAAAAAAAA+GGG + chr4_1:77434188-77434207 None:intergenic 25.0%
!! TTTGCTATCTGACAAAAAAA+AGG + chr4_1:77434189-77434208 None:intergenic 25.0%
! TACAAAGAAACTTTCTTGAT+TGG + chr4_1:77434232-77434251 None:intergenic 25.0%
! GAGTAATGAAATTGTGTAAT+TGG - chr4_1:77434382-77434401 Msa0574060:three_prime_UTR 25.0%
! ACTTCTTTCTAATTTAGTCT+CGG - chr4_1:77434594-77434613 Msa0574060:CDS 25.0%
!! ATTTGACATATAGTTTTCCT+TGG + chr4_1:77434771-77434790 None:intergenic 25.0%
! TCAAATTATTAATCGAGACT+TGG - chr4_1:77434785-77434804 Msa0574060:intron 25.0%
!! GTGTTATTATTGTTTGGTAA+TGG - chr4_1:77434908-77434927 Msa0574060:intron 25.0%
!!! CTTTGATTCTGAATTTGTTA+TGG - chr4_1:77435124-77435143 Msa0574060:intron 25.0%
!!! TTCTGAATTTGTTATGGTAA+TGG - chr4_1:77435130-77435149 Msa0574060:intron 25.0%
!!! TTGTTATGGTAATGGTAAAA+TGG - chr4_1:77435138-77435157 Msa0574060:intron 25.0%
! CAGACTATAAGTTATAATTC+AGG + chr4_1:77435307-77435326 None:intergenic 25.0%
!! TTCTGAGAAGACAAAAAAAT+GGG + chr4_1:77435347-77435366 None:intergenic 25.0%
!! AATTTGTTTGGTGGTATAAT+GGG - chr4_1:77435393-77435412 Msa0574060:intron 25.0%
! AATTAACATTCACTTACTAC+AGG + chr4_1:77435576-77435595 None:intergenic 25.0%
! GAATGTTAATTACATACTTG+TGG - chr4_1:77435585-77435604 Msa0574060:intron 25.0%
!!! CCAACTTACTTTTTGTATTT+TGG + chr4_1:77435621-77435640 None:intergenic 25.0%
! CCAAAATACAAAAAGTAAGT+TGG - chr4_1:77435618-77435637 Msa0574060:CDS 25.0%
! ATATGTGTAAGTCATCTAAT+AGG + chr4_1:77435809-77435828 None:intergenic 25.0%
! TGTTGTTCTATGAAATTGTT+TGG - chr4_1:77436226-77436245 Msa0574060:intron 25.0%
!! ATGATTTTCTTTGTTAGACA+TGG - chr4_1:77436284-77436303 Msa0574060:CDS 25.0%
! AAACTGTTTGAACTGAATAA+TGG - chr4_1:77436451-77436470 Msa0574060:intron 25.0%
! AACTGTTTGAACTGAATAAT+GGG - chr4_1:77436452-77436471 Msa0574060:intron 25.0%
! AGATGCAAAATAGAAAAGTA+GGG + chr4_1:77436753-77436772 None:intergenic 25.0%
! AAGATGCAAAATAGAAAAGT+AGG + chr4_1:77436754-77436773 None:intergenic 25.0%
!! TATGTATTGATGTTGTCATT+TGG - chr4_1:77436855-77436874 Msa0574060:intron 25.0%
! CAAAAATTCTTCTGTGTATT+CGG + chr4_1:77436903-77436922 None:intergenic 25.0%
! TTTGATTCTTGAAAACTATC+TGG + chr4_1:77437009-77437028 None:intergenic 25.0%
!! TGAACATGCTTTAGTATTTT+TGG - chr4_1:77437278-77437297 Msa0574060:intron 25.0%
!!! GATAGTTTTGAAAATCACAA+GGG + chr4_1:77437359-77437378 None:intergenic 25.0%
!!! TGATAGTTTTGAAAATCACA+AGG + chr4_1:77437360-77437379 None:intergenic 25.0%
!! GTGATTTTCAAAACTATCAA+TGG - chr4_1:77437361-77437380 Msa0574060:intron 25.0%
! TACGTTCAATAGTTAAAGTT+TGG - chr4_1:77437431-77437450 Msa0574060:intron 25.0%
! CATAAATTTATTTCGGTAAC+TGG - chr4_1:77437454-77437473 Msa0574060:intron 25.0%
!!! CAAATTGATTTTATAGGTGT+TGG - chr4_1:77437615-77437634 Msa0574060:intron 25.0%
! GTGATTTAATATGGTTTCTT+GGG + chr4_1:77437700-77437719 None:intergenic 25.0%
! TGTGATTTAATATGGTTTCT+TGG + chr4_1:77437701-77437720 None:intergenic 25.0%
! TTGTAAAAAATCTTACCCTT+TGG - chr4_1:77437731-77437750 Msa0574060:intron 25.0%
!! ACATTTTGTGATAATATCAC+AGG + chr4_1:77437989-77438008 None:intergenic 25.0%
! GCACGAAAAGTAATTAAATT+AGG + chr4_1:77438146-77438165 None:intergenic 25.0%
!! TTTTCAAATTGAGATTACAG+GGG - chr4_1:77438609-77438628 Msa0574060:CDS 25.0%
!! AAAAAGAGTCATTTGGTAAT+TGG + chr4_1:77438742-77438761 None:intergenic 25.0%
! ATGACTAAAAAAGAGTCATT+TGG + chr4_1:77438749-77438768 None:intergenic 25.0%
! AATAAGCTATAAGCTCAAAA+AGG - chr4_1:77438776-77438795 Msa0574060:intron 25.0%
! TTAAGTGAAAACAAAACAGT+AGG - chr4_1:77438846-77438865 Msa0574060:intron 25.0%
!!! GATTTTAAGGTTAGACATTT+GGG + chr4_1:77438876-77438895 None:intergenic 25.0%
!!! TGATTTTAAGGTTAGACATT+TGG + chr4_1:77438877-77438896 None:intergenic 25.0%
! AAGCATGAGTTAATAACAAA+AGG + chr4_1:77439088-77439107 None:intergenic 25.0%
! CTCAGAGTTAATATATTTGA+TGG - chr4_1:77439187-77439206 Msa0574060:intron 25.0%
! CTGACATGATATTATATTAG+TGG + chr4_1:77439665-77439684 None:intergenic 25.0%
! ATTTGAATGAACTCAGAATT+GGG + chr4_1:77439729-77439748 None:intergenic 25.0%
! AATTTGAATGAACTCAGAAT+TGG + chr4_1:77439730-77439749 None:intergenic 25.0%
!! TTAGTGGACAAGATTATAAT+AGG - chr4_1:77439897-77439916 Msa0574060:intron 25.0%
! ATTATAATAGGTCCTTTCAA+TGG - chr4_1:77439909-77439928 Msa0574060:intron 25.0%
!!! ATGTAGATTTTAGGTCAATA+TGG - chr4_1:77439975-77439994 Msa0574060:intron 25.0%
! TATTTAATGTTCTCATCTTG+CGG + chr4_1:77440019-77440038 None:intergenic 25.0%
! GTAAAATAACATACTTGACA+TGG + chr4_1:77440118-77440137 None:intergenic 25.0%
! GTGTGATAGTAATACAAATA+TGG + chr4_1:77440435-77440454 None:intergenic 25.0%
! TTAGATGACATAGTTGAAAT+GGG + chr4_1:77440465-77440484 None:intergenic 25.0%
! GATAGTTTCATTCAATGATT+GGG - chr4_1:77440907-77440926 Msa0574060:intron 25.0%
!!! TCAATTATTTGGTGTTTTCT+TGG + chr4_1:77441073-77441092 None:intergenic 25.0%
! TTAATGTGTACAATGAACTA+TGG + chr4_1:77441392-77441411 None:intergenic 25.0%
TGCTATCTGACAAAAAAAAG+GGG + chr4_1:77434187-77434206 None:intergenic 30.0%
AAAATTGGACCTTAGTTTCA+GGG + chr4_1:77434523-77434542 None:intergenic 30.0%
TAAAATTGGACCTTAGTTTC+AGG + chr4_1:77434524-77434543 None:intergenic 30.0%
TACTAAATCCAGAGATAGAT+TGG + chr4_1:77434817-77434836 None:intergenic 30.0%
TATCTCTGGATTTAGTACTT+GGG - chr4_1:77434820-77434839 Msa0574060:intron 30.0%
! GGTTGTGTGTTATTATTGTT+TGG - chr4_1:77434902-77434921 Msa0574060:intron 30.0%
!! ATTATTGTTTGGTAATGGGA+TGG - chr4_1:77434913-77434932 Msa0574060:intron 30.0%
!! TTATTGTTTGGTAATGGGAT+GGG - chr4_1:77434914-77434933 Msa0574060:intron 30.0%
!! GTTCTGAGAAGACAAAAAAA+TGG + chr4_1:77435348-77435367 None:intergenic 30.0%
TTGTCTTCTCAGAACTTAAA+AGG - chr4_1:77435353-77435372 Msa0574060:intron 30.0%
! GAATTTGTTTGGTGGTATAA+TGG - chr4_1:77435392-77435411 Msa0574060:intron 30.0%
ATTGATACAGCTGTAATTCT+TGG - chr4_1:77435455-77435474 Msa0574060:intron 30.0%
TCAAATCCTAACCTATTAGA+TGG - chr4_1:77435738-77435757 Msa0574060:CDS 30.0%
ATATGTGTAAGCCATCTAAT+AGG + chr4_1:77435752-77435771 None:intergenic 30.0%
ATAGGTTAGGATTTGAATTG+TGG + chr4_1:77435791-77435810 None:intergenic 30.0%
TGTAAGTCATCTAATAGGTT+AGG + chr4_1:77435804-77435823 None:intergenic 30.0%
ATACTACAGGGTAGTTTATT+TGG - chr4_1:77436063-77436082 Msa0574060:intron 30.0%
TATGCATCAGAAAACTGAAT+GGG + chr4_1:77436187-77436206 None:intergenic 30.0%
ATATGCATCAGAAAACTGAA+TGG + chr4_1:77436188-77436207 None:intergenic 30.0%
TTCTATGAAATTGTTTGGCA+AGG - chr4_1:77436231-77436250 Msa0574060:CDS 30.0%
TCTATGAAATTGTTTGGCAA+GGG - chr4_1:77436232-77436251 Msa0574060:CDS 30.0%
ATGGATGTTTCCTTTGTAAA+CGG - chr4_1:77436303-77436322 Msa0574060:CDS 30.0%
ACTGAAATCATGGAAATCAA+TGG + chr4_1:77436382-77436401 None:intergenic 30.0%
ACTGTTTGAACTGAATAATG+GGG - chr4_1:77436453-77436472 Msa0574060:intron 30.0%
TACCACCTGATATATTAGAT+CGG - chr4_1:77436497-77436516 Msa0574060:intron 30.0%
AGAAACCGATCTAATATATC+AGG + chr4_1:77436505-77436524 None:intergenic 30.0%
ATTTACTTGCCATATACTGT+AGG - chr4_1:77436562-77436581 Msa0574060:intron 30.0%
AGGCTTCATCATTTATTTAC+AGG - chr4_1:77436615-77436634 Msa0574060:intron 30.0%
TCAATTTATACCTCATCAGT+TGG + chr4_1:77436690-77436709 None:intergenic 30.0%
CACAAAAACATCTAGATTCT+GGG + chr4_1:77436780-77436799 None:intergenic 30.0%
ACACAAAAACATCTAGATTC+TGG + chr4_1:77436781-77436800 None:intergenic 30.0%
!!! AATTTTTGAGTTGCTATCCA+AGG - chr4_1:77436915-77436934 Msa0574060:intron 30.0%
TTTGAGAAGACAGTTCTTAA+AGG - chr4_1:77437060-77437079 Msa0574060:intron 30.0%
!!! ACATGCTTTAGTATTTTTGG+AGG - chr4_1:77437281-77437300 Msa0574060:intron 30.0%
TTCACTCACACTCATAAAAT+AGG + chr4_1:77437326-77437345 None:intergenic 30.0%
TATAATGATACCGGAAGAAA+AGG + chr4_1:77437764-77437783 None:intergenic 30.0%
CTCTTTACTTTATACAGGAT+AGG + chr4_1:77437814-77437833 None:intergenic 30.0%
! AGAAAAGATTTTGTGGCAAA+TGG + chr4_1:77437917-77437936 None:intergenic 30.0%
! TACCAGTAGAAAAGATTTTG+TGG + chr4_1:77437924-77437943 None:intergenic 30.0%
ACAGGAATAAATATCTGTTG+AGG + chr4_1:77437971-77437990 None:intergenic 30.0%
! CATTGGTTATAAATCAGTAC+CGG - chr4_1:77438070-77438089 Msa0574060:intron 30.0%
TCACCTTTCTTATGATCAAA+AGG + chr4_1:77438107-77438126 None:intergenic 30.0%
!!! AAAACCATGTTTTGGGAAAA+TGG - chr4_1:77438203-77438222 Msa0574060:intron 30.0%
AAATTAGGGAAAATGGTATC+CGG - chr4_1:77438252-77438271 Msa0574060:intron 30.0%
ATCCTAATTTACAGTTAACC+CGG + chr4_1:77438322-77438341 None:intergenic 30.0%
!!! GTATTCAGCATTTTTTTACC+AGG - chr4_1:77438409-77438428 Msa0574060:intron 30.0%
! GCTGATAATCTAGTTTATAG+TGG - chr4_1:77438495-77438514 Msa0574060:intron 30.0%
CTGATTGAATTTGTAGTGTT+TGG - chr4_1:77438527-77438546 Msa0574060:CDS 30.0%
!!! GTGTTTTTTTCACTGTATGT+AGG - chr4_1:77438930-77438949 Msa0574060:CDS 30.0%
ATTTACAAGTCCTATCTACA+TGG + chr4_1:77438957-77438976 None:intergenic 30.0%
ATGTAGATAGGACTTGTAAA+TGG - chr4_1:77438956-77438975 Msa0574060:intron 30.0%
! ATAGGACTTGTAAATGGATT+TGG - chr4_1:77438962-77438981 Msa0574060:intron 30.0%
CTCTGTTCATTGTAGATTAA+CGG - chr4_1:77439025-77439044 Msa0574060:intron 30.0%
TCTGTTCATTGTAGATTAAC+GGG - chr4_1:77439026-77439045 Msa0574060:intron 30.0%
GGTATAGTTCCAAATGATAA+AGG - chr4_1:77439220-77439239 Msa0574060:intron 30.0%
GGGATAATACGAATAGAAAA+GGG + chr4_1:77439379-77439398 None:intergenic 30.0%
AGGGATAATACGAATAGAAA+AGG + chr4_1:77439380-77439399 None:intergenic 30.0%
CTGTCAGTTTAACTGTTATA+GGG + chr4_1:77439399-77439418 None:intergenic 30.0%
TCTGTCAGTTTAACTGTTAT+AGG + chr4_1:77439400-77439419 None:intergenic 30.0%
AAGGTTCGTAATATACACAT+AGG + chr4_1:77439612-77439631 None:intergenic 30.0%
TTAACTAGCATTAATGCTGA+AGG + chr4_1:77439631-77439650 None:intergenic 30.0%
AATTGGGAATCGAGAAATAA+GGG + chr4_1:77439713-77439732 None:intergenic 30.0%
!! ATTTTAGGTCAATATGGAAG+AGG - chr4_1:77439981-77440000 Msa0574060:intron 30.0%
!! TTTTAGGTCAATATGGAAGA+GGG - chr4_1:77439982-77440001 Msa0574060:intron 30.0%
! TAGAAGTATAGAACTACAAG+TGG + chr4_1:77440241-77440260 None:intergenic 30.0%
CATAGTTGAAATGGGAAATT+TGG + chr4_1:77440457-77440476 None:intergenic 30.0%
CTTAGATGACATAGTTGAAA+TGG + chr4_1:77440466-77440485 None:intergenic 30.0%
CATCATACATAGACTATGAT+TGG - chr4_1:77440542-77440561 Msa0574060:CDS 30.0%
!!! CAGGTTTTTTATATGCATGA+TGG + chr4_1:77440653-77440672 None:intergenic 30.0%
ATATTAGAAGACCTTGAGAA+AGG - chr4_1:77440806-77440825 Msa0574060:intron 30.0%
TTCTATCATGCAAAAGATTG+AGG + chr4_1:77440880-77440899 None:intergenic 30.0%
! TTTTGCATGATAGAAACGTT+AGG - chr4_1:77440885-77440904 Msa0574060:intron 30.0%
GGATAGTTTCATTCAATGAT+TGG - chr4_1:77440906-77440925 Msa0574060:intron 30.0%
AGAAAATGTAATGTATCACG+TGG + chr4_1:77441044-77441063 None:intergenic 30.0%
GCTATCTGACAAAAAAAAGG+GGG + chr4_1:77434186-77434205 None:intergenic 35.0%
TATGTTGTGTCAGATGTTGA+AGG - chr4_1:77434415-77434434 Msa0574060:three_prime_UTR 35.0%
CTTTCTAATTTAGTCTCGGT+CGG - chr4_1:77434598-77434617 Msa0574060:CDS 35.0%
GTGGTCATAATAAGAGATAG+AGG - chr4_1:77434741-77434760 Msa0574060:CDS 35.0%
CTATCTCTGGATTTAGTACT+TGG - chr4_1:77434819-77434838 Msa0574060:intron 35.0%
!! TATTGTTTGGTAATGGGATG+GGG - chr4_1:77434915-77434934 Msa0574060:intron 35.0%
! GGGTTATCCATGTTTTTCTT+TGG - chr4_1:77434935-77434954 Msa0574060:intron 35.0%
ACTCTCACCAAAGAAAAACA+TGG + chr4_1:77434945-77434964 None:intergenic 35.0%
! ACAATCTGTTGCAAGTTTTC+TGG + chr4_1:77434989-77435008 None:intergenic 35.0%
! TTGTCGTCAACCAATTTTCA+AGG - chr4_1:77435005-77435024 Msa0574060:intron 35.0%
! TGTCGTCAACCAATTTTCAA+GGG - chr4_1:77435006-77435025 Msa0574060:intron 35.0%
!!! CATGAACGATGCTCATTTTT+TGG - chr4_1:77435037-77435056 Msa0574060:intron 35.0%
!!! TTTTTTGGAAATGTGACGCT+TGG - chr4_1:77435052-77435071 Msa0574060:intron 35.0%
TGCACGAATTATCGAAAAGA+TGG + chr4_1:77435188-77435207 None:intergenic 35.0%
TAGATCAAACATACTTCTCC+AGG + chr4_1:77435269-77435288 None:intergenic 35.0%
! TATCAGCCAGAGAATTTGTT+TGG - chr4_1:77435381-77435400 Msa0574060:intron 35.0%
ATACCACCAAACAAATTCTC+TGG + chr4_1:77435390-77435409 None:intergenic 35.0%
GCTTATAACATAGCCACAAT+GGG + chr4_1:77435687-77435706 None:intergenic 35.0%
TGCTTATAACATAGCCACAA+TGG + chr4_1:77435688-77435707 None:intergenic 35.0%
!! ATAGGTTAGGATTTGAGTTG+TGG + chr4_1:77435734-77435753 None:intergenic 35.0%
TGTAAGCCATCTAATAGGTT+AGG + chr4_1:77435747-77435766 None:intergenic 35.0%
GGCTTACACATATTTGTAAG+AGG - chr4_1:77435759-77435778 Msa0574060:CDS 35.0%
TAAAGTAGACAAAGCATGAC+TGG + chr4_1:77435957-77435976 None:intergenic 35.0%
TACAGGGTAGTTTATTTGGT+TGG - chr4_1:77436067-77436086 Msa0574060:intron 35.0%
GGGTAAAATAAACTCGCTAT+AGG + chr4_1:77436167-77436186 None:intergenic 35.0%
TGGATGTTTCCTTTGTAAAC+GGG - chr4_1:77436304-77436323 Msa0574060:CDS 35.0%
! GCTAGTTTACACTATCAAGT+TGG - chr4_1:77436345-77436364 Msa0574060:CDS 35.0%
CCAATAAGAGACTGAAATCA+TGG + chr4_1:77436392-77436411 None:intergenic 35.0%
CCATGATTTCAGTCTCTTAT+TGG - chr4_1:77436389-77436408 Msa0574060:intron 35.0%
! TTACTTACTGGTGCTAGTAA+AGG - chr4_1:77436428-77436447 Msa0574060:intron 35.0%
!!! GGGGTCTTGATCATTTTTTT+TGG - chr4_1:77436472-77436491 Msa0574060:intron 35.0%
AACCGATCTAATATATCAGG+TGG + chr4_1:77436502-77436521 None:intergenic 35.0%
TTTCTCATCCTAAGCTGTAT+TGG - chr4_1:77436520-77436539 Msa0574060:intron 35.0%
AACTATCACCAATACAGCTT+AGG + chr4_1:77436531-77436550 None:intergenic 35.0%
GATGTAAGACCTACAGTATA+TGG + chr4_1:77436574-77436593 None:intergenic 35.0%
! TTTTCTCACAACACTAACTG+AGG - chr4_1:77436595-77436614 Msa0574060:intron 35.0%
GAATCTTGATGTTTCCATAC+AGG - chr4_1:77436644-77436663 Msa0574060:intron 35.0%
ATGTAGATCAGATTCCTGTA+TGG + chr4_1:77436661-77436680 None:intergenic 35.0%
! TTGATGTTGTCATTTGGCAA+AGG - chr4_1:77436861-77436880 Msa0574060:intron 35.0%
! CTTGAAAACTATCTGGCTTA+CGG + chr4_1:77437002-77437021 None:intergenic 35.0%
CAAGAATCAAAAGACAGTAC+TGG - chr4_1:77437018-77437037 Msa0574060:intron 35.0%
TGTATGTACGTCGTACATTT+GGG + chr4_1:77437483-77437502 None:intergenic 35.0%
!! AATGTGCTAGTCTTTAGCAA+AGG + chr4_1:77437552-77437571 None:intergenic 35.0%
GACTAGCACATTTATGCATA+TGG - chr4_1:77437560-77437579 Msa0574060:intron 35.0%
TTCAAATTCTCCAGTACCAA+CGG + chr4_1:77437658-77437677 None:intergenic 35.0%
!! AGAAAAGGTTTTGTGCCAAA+GGG + chr4_1:77437749-77437768 None:intergenic 35.0%
!! AAGAAAAGGTTTTGTGCCAA+AGG + chr4_1:77437750-77437769 None:intergenic 35.0%
! TGCCACAAAATCTTTTCTAC+TGG - chr4_1:77437919-77437938 Msa0574060:CDS 35.0%
!! TATAAATCAGTACCGGTAGA+TGG - chr4_1:77438077-77438096 Msa0574060:intron 35.0%
CTTTCTTATGATCAAAAGGC+AGG + chr4_1:77438103-77438122 None:intergenic 35.0%
! CTGCCTTTTGATCATAAGAA+AGG - chr4_1:77438101-77438120 Msa0574060:intron 35.0%
! ACTGTGACAAAACCATGTTT+TGG - chr4_1:77438195-77438214 Msa0574060:intron 35.0%
! CTGTGACAAAACCATGTTTT+GGG - chr4_1:77438196-77438215 Msa0574060:intron 35.0%
! GATACCATTTTCCCAAAACA+TGG + chr4_1:77438210-77438229 None:intergenic 35.0%
!!! TGTTTTGGGAAAATGGTATC+CGG - chr4_1:77438210-77438229 Msa0574060:intron 35.0%
ATTACAGGCTTGGGAAATTA+GGG - chr4_1:77438238-77438257 Msa0574060:intron 35.0%
!! ATGATGTTTTGTTGATCCTC+CGG - chr4_1:77438300-77438319 Msa0574060:intron 35.0%
!!! AGCATTTTTTTACCAGGATG+TGG - chr4_1:77438415-77438434 Msa0574060:intron 35.0%
TAGTCAATAAAACCACATCC+TGG + chr4_1:77438430-77438449 None:intergenic 35.0%
ATAAGCTCGTGAGAAAATGA+TGG - chr4_1:77438713-77438732 Msa0574060:intron 35.0%
AATCTCTGATCAACTGCTAA+GGG + chr4_1:77438817-77438836 None:intergenic 35.0%
AAATCTCTGATCAACTGCTA+AGG + chr4_1:77438818-77438837 None:intergenic 35.0%
GTGAAAACAAAACAGTAGGA+TGG - chr4_1:77438850-77438869 Msa0574060:intron 35.0%
CGTTAATCTACAATGAACAG+AGG + chr4_1:77439027-77439046 None:intergenic 35.0%
TCATTGTAGATTAACGGGAT+TGG - chr4_1:77439031-77439050 Msa0574060:intron 35.0%
! GCATCATGCTTGTTAATTCT+AGG + chr4_1:77439134-77439153 None:intergenic 35.0%
! ATATTTGATGGGTACCTTTC+AGG - chr4_1:77439199-77439218 Msa0574060:intron 35.0%
! CATTTGGAACTATACCTGAA+AGG + chr4_1:77439216-77439235 None:intergenic 35.0%
AACACTCGACCTTTATCATT+TGG + chr4_1:77439232-77439251 None:intergenic 35.0%
CAGTTTCTTCAGCACAATAT+AGG + chr4_1:77439345-77439364 None:intergenic 35.0%
GAACAATGAAGAAGAACTTC+AGG + chr4_1:77439590-77439609 None:intergenic 35.0%
TCGAGAAATAAGGGTTTAAG+AGG + chr4_1:77439704-77439723 None:intergenic 35.0%
GAATTGGGAATCGAGAAATA+AGG + chr4_1:77439714-77439733 None:intergenic 35.0%
GAGAAAACAAGAGTTTGACT+AGG + chr4_1:77439777-77439796 None:intergenic 35.0%
TCCTTTCAATGGCAATTACA+TGG - chr4_1:77439920-77439939 Msa0574060:intron 35.0%
TATTTCAGCAGCATGCATAT+TGG - chr4_1:77440259-77440278 Msa0574060:intron 35.0%
ATGCATATTGGATGCGATAT+TGG - chr4_1:77440271-77440290 Msa0574060:intron 35.0%
TGCATATTGGATGCGATATT+GGG - chr4_1:77440272-77440291 Msa0574060:intron 35.0%
TATGGTCTCTATGAAAACTG+TGG + chr4_1:77440417-77440436 None:intergenic 35.0%
! TGCGTTTAGAAGTGTGAAAT+AGG + chr4_1:77440512-77440531 None:intergenic 35.0%
CACTTCTAAACGCATTATTC+AGG - chr4_1:77440518-77440537 Msa0574060:CDS 35.0%
CTAATACTAATGCTGCATAC+AGG + chr4_1:77440672-77440691 None:intergenic 35.0%
! TTCGCTCAACTTTTAACAAC+AGG - chr4_1:77440701-77440720 Msa0574060:intron 35.0%
! TCGCTCAACTTTTAACAACA+GGG - chr4_1:77440702-77440721 Msa0574060:intron 35.0%
! AACTTTTAACAACAGGGAAG+AGG - chr4_1:77440708-77440727 Msa0574060:intron 35.0%
! ACTTTTAACAACAGGGAAGA+GGG - chr4_1:77440709-77440728 Msa0574060:intron 35.0%
! TTTTCTGCTGACAATTGACA+TGG - chr4_1:77440771-77440790 Msa0574060:intron 35.0%
AAATCAAACCACCTTTCTCA+AGG + chr4_1:77440820-77440839 None:intergenic 35.0%
! AGATAGACTCTGAAGAAAAG+AGG - chr4_1:77440933-77440952 Msa0574060:intron 35.0%
! AAAAGAGGCTTGGTAGTTTA+AGG - chr4_1:77440948-77440967 Msa0574060:intron 35.0%
TAGTTTAAGGAACAAGCCTA+GGG - chr4_1:77440961-77440980 Msa0574060:intron 35.0%
CTTTCACATTACACACTCAT+TGG - chr4_1:77441100-77441119 Msa0574060:CDS 35.0%
ACATTTCAGAAGAGAACACT+TGG + chr4_1:77441152-77441171 None:intergenic 35.0%
!! GCAGAAAGAAGCATGATTTT+TGG - chr4_1:77441195-77441214 Msa0574060:intron 35.0%
GTTGAGCAATGATATTTGCA+TGG - chr4_1:77441247-77441266 Msa0574060:intron 35.0%
TAGTCTCGGTCGGTATAAAT+TGG - chr4_1:77434608-77434627 Msa0574060:CDS 40.0%
TGTAGAAGCAATCACCAGTA+AGG - chr4_1:77434696-77434715 Msa0574060:CDS 40.0%
GAATAAACAACCCTCCTTAC+TGG + chr4_1:77434713-77434732 None:intergenic 40.0%
AAGGAGGGTTGTTTATTCAG+AGG - chr4_1:77434715-77434734 Msa0574060:CDS 40.0%
AGGGTTGTTTATTCAGAGGA+TGG - chr4_1:77434719-77434738 Msa0574060:CDS 40.0%
GTTGTTTATTCAGAGGATGG+TGG - chr4_1:77434722-77434741 Msa0574060:CDS 40.0%
TAAGAGATAGAGGAACACCA+AGG - chr4_1:77434751-77434770 Msa0574060:CDS 40.0%
GGTGTTAACCAATCTATCTC+TGG - chr4_1:77434806-77434825 Msa0574060:intron 40.0%
TTACGTGGCGTCAAGTAAAT+GGG + chr4_1:77434867-77434886 None:intergenic 40.0%
ATTACGTGGCGTCAAGTAAA+TGG + chr4_1:77434868-77434887 None:intergenic 40.0%
ATTTACTTGACGCCACGTAA+TGG - chr4_1:77434867-77434886 Msa0574060:intron 40.0%
TTTACTTGACGCCACGTAAT+GGG - chr4_1:77434868-77434887 Msa0574060:intron 40.0%
! AAAGCCTTTTTCCCATTACG+TGG + chr4_1:77434882-77434901 None:intergenic 40.0%
! ACGTAATGGGAAAAAGGCTT+TGG - chr4_1:77434881-77434900 Msa0574060:intron 40.0%
CAATTCAGCAAGAGATACGT+TGG + chr4_1:77435080-77435099 None:intergenic 40.0%
GATCAAGATTTCGTCCATCT+GGG + chr4_1:77435421-77435440 None:intergenic 40.0%
TACAGCTGTAATTCTTGGTC+AGG - chr4_1:77435460-77435479 Msa0574060:intron 40.0%
! AGGCACTGTAAGAATACATG+AGG + chr4_1:77435494-77435513 None:intergenic 40.0%
TATTAAACTCCCGCCATGAT+GGG - chr4_1:77435644-77435663 Msa0574060:CDS 40.0%
TAATATGTACCCCATCATGG+CGG + chr4_1:77435657-77435676 None:intergenic 40.0%
! CCATGATGGGGTACATATTA+GGG - chr4_1:77435657-77435676 Msa0574060:CDS 40.0%
TAAGCAGTCTTACCTGTAAG+AGG - chr4_1:77435702-77435721 Msa0574060:CDS 40.0%
TTGTGGAATCAACCTCTTAC+AGG + chr4_1:77435717-77435736 None:intergenic 40.0%
TTTACGACCTACTACAGAGT+TGG - chr4_1:77435916-77435935 Msa0574060:intron 40.0%
! CTTTAGAAGAGAGCTCTATC+AGG - chr4_1:77435972-77435991 Msa0574060:intron 40.0%
GGGTAGTTTATTTGGTTGGA+AGG - chr4_1:77436071-77436090 Msa0574060:intron 40.0%
AAAGAGCTACGTGAAGTTCT+AGG - chr4_1:77436124-77436143 Msa0574060:intron 40.0%
!! TGAGAAGTACCCGTTTACAA+AGG + chr4_1:77436316-77436335 None:intergenic 40.0%
ACATCTAACTCCAACTGATG+AGG - chr4_1:77436677-77436696 Msa0574060:intron 40.0%
AGAAAAGTAGGGATGACGAT+TGG + chr4_1:77436742-77436761 None:intergenic 40.0%
TGGTTCAAACCAGCATGTAT+TGG + chr4_1:77436955-77436974 None:intergenic 40.0%
AGACAAAACGAAGTTGACGT+TGG + chr4_1:77436975-77436994 None:intergenic 40.0%
GAAGAGGTCGTATCATTGTT+CGG + chr4_1:77437180-77437199 None:intergenic 40.0%
GAAGACGAATAAAAGTGGGA+AGG + chr4_1:77437220-77437239 None:intergenic 40.0%
GCGAGAAGACGAATAAAAGT+GGG + chr4_1:77437224-77437243 None:intergenic 40.0%
AGCGAGAAGACGAATAAAAG+TGG + chr4_1:77437225-77437244 None:intergenic 40.0%
CTGTATGTACGTCGTACATT+TGG + chr4_1:77437484-77437503 None:intergenic 40.0%
!! CAACGGCAATTTGTTTTCCA+GGG + chr4_1:77437641-77437660 None:intergenic 40.0%
AAACAAATTGCCGTTGGTAC+TGG - chr4_1:77437645-77437664 Msa0574060:intron 40.0%
! TGGCACAAAACCTTTTCTTC+CGG - chr4_1:77437751-77437770 Msa0574060:intron 40.0%
! AGGATGGTTCTTAAGAGCAT+TGG - chr4_1:77438053-77438072 Msa0574060:intron 40.0%
TGGTATCCGGTAAAGATTAC+AGG - chr4_1:77438223-77438242 Msa0574060:intron 40.0%
GATTACAGGCTTGGGAAATT+AGG - chr4_1:77438237-77438256 Msa0574060:intron 40.0%
GCTTGGGAAATTAGGGAAAA+TGG - chr4_1:77438245-77438264 Msa0574060:intron 40.0%
TGGTATCCGGTAAAGATTAC+AGG - chr4_1:77438223-77438242 Msa0574060:intron 40.0%
!! TGATGTTTTGTTGATCCTCC+GGG - chr4_1:77438301-77438320 Msa0574060:intron 40.0%
CTAATTTACAGTTAACCCGG+AGG + chr4_1:77438319-77438338 None:intergenic 40.0%
CTCCGGGTTAACTGTAAATT+AGG - chr4_1:77438317-77438336 Msa0574060:intron 40.0%
ACTATGACCATATCCGACTT+AGG - chr4_1:77438446-77438465 Msa0574060:intron 40.0%
TTACCAAACAGAGCCTAAGT+CGG + chr4_1:77438462-77438481 None:intergenic 40.0%
GTATGTAGGTCCATGTAGAT+AGG - chr4_1:77438944-77438963 Msa0574060:intron 40.0%
AAAAGGAGAGACTACAAAGC+AGG + chr4_1:77439071-77439090 None:intergenic 40.0%
AGATACTGCAGTTCTTGAAG+AGG - chr4_1:77439264-77439283 Msa0574060:intron 40.0%
GATACTGCAGTTCTTGAAGA+GGG - chr4_1:77439265-77439284 Msa0574060:intron 40.0%
ATATTGTGGAGAATCTACCC+CGG + chr4_1:77439823-77439842 None:intergenic 40.0%
GATTCTCCACAATATGTCCT+AGG - chr4_1:77439828-77439847 Msa0574060:intron 40.0%
AACACACCTAGGACATATTG+TGG + chr4_1:77439837-77439856 None:intergenic 40.0%
! TCCTTTCCTTGCTAGTTTAG+TGG - chr4_1:77439881-77439900 Msa0574060:intron 40.0%
TCCACTAAACTAGCAAGGAA+AGG + chr4_1:77439885-77439904 None:intergenic 40.0%
TCTTGTCCACTAAACTAGCA+AGG + chr4_1:77439890-77439909 None:intergenic 40.0%
GCCATGTAATTGCCATTGAA+AGG + chr4_1:77439924-77439943 None:intergenic 40.0%
! GGAGGTAGCATGTAGATTTT+AGG - chr4_1:77439966-77439985 Msa0574060:intron 40.0%
! AGTGGGATTTGGTCAACATT+TGG + chr4_1:77440196-77440215 None:intergenic 40.0%
AGAATGTTTCCTCGTGAAGT+GGG + chr4_1:77440213-77440232 None:intergenic 40.0%
GCATATTGGATGCGATATTG+GGG - chr4_1:77440273-77440292 Msa0574060:intron 40.0%
TTAGAAGACCTTGAGAAAGG+TGG - chr4_1:77440809-77440828 Msa0574060:intron 40.0%
GTAGTTTAAGGAACAAGCCT+AGG - chr4_1:77440960-77440979 Msa0574060:intron 40.0%
CATTGGTGAGCATATCAACA+AGG - chr4_1:77441117-77441136 Msa0574060:CDS 40.0%
TTCAGAAGAGAACACTTGGA+TGG + chr4_1:77441148-77441167 None:intergenic 40.0%
! ACAAAAAAAAGGGGGCGTAC+CGG + chr4_1:77434178-77434197 None:intergenic 45.0%
! AAGCTAGCTCTCTGAACTTG+AGG - chr4_1:77434343-77434362 Msa0574060:three_prime_UTR 45.0%
GATAGATTGCCTACGCCTTT+CGG - chr4_1:77434467-77434486 Msa0574060:three_prime_UTR 45.0%
ATAGATTGCCTACGCCTTTC+GGG - chr4_1:77434468-77434487 Msa0574060:three_prime_UTR 45.0%
ACCTTAGTTTCAGGGTGATC+GGG + chr4_1:77434515-77434534 None:intergenic 45.0%
GACCTTAGTTTCAGGGTGAT+CGG + chr4_1:77434516-77434535 None:intergenic 45.0%
AGAAGCAATCACCAGTAAGG+AGG - chr4_1:77434699-77434718 Msa0574060:CDS 45.0%
GAAGCAATCACCAGTAAGGA+GGG - chr4_1:77434700-77434719 Msa0574060:CDS 45.0%
CTCTGGATTTAGTACTTGGG+AGG - chr4_1:77434823-77434842 Msa0574060:intron 45.0%
!! CGTCAACCAATTTTCAAGGG+TGG - chr4_1:77435009-77435028 Msa0574060:intron 45.0%
ATTGCGCAAGCTGTATCATG+TGG - chr4_1:77435096-77435115 Msa0574060:intron 45.0%
CACTTTCAGCACCATATGCA+AGG + chr4_1:77435229-77435248 None:intergenic 45.0%
GCTGAAAGTGACAGAAGTCT+TGG - chr4_1:77435239-77435258 Msa0574060:intron 45.0%
GACAGAAGTCTTGGAATTCC+TGG - chr4_1:77435248-77435267 Msa0574060:intron 45.0%
! CAGCCAGAGAATTTGTTTGG+TGG - chr4_1:77435384-77435403 Msa0574060:intron 45.0%
GGATCAAGATTTCGTCCATC+TGG + chr4_1:77435422-77435441 None:intergenic 45.0%
GTATCAATGCTCTTCAGGTC+TGG + chr4_1:77435443-77435462 None:intergenic 45.0%
CAGCTGTATCAATGCTCTTC+AGG + chr4_1:77435448-77435467 None:intergenic 45.0%
CTATTAAACTCCCGCCATGA+TGG - chr4_1:77435643-77435662 Msa0574060:CDS 45.0%
ATTAAACTCCCGCCATGATG+GGG - chr4_1:77435645-77435664 Msa0574060:CDS 45.0%
AATATGTACCCCATCATGGC+GGG + chr4_1:77435656-77435675 None:intergenic 45.0%
! GCCATGATGGGGTACATATT+AGG - chr4_1:77435656-77435675 Msa0574060:CDS 45.0%
CCCTAATATGTACCCCATCA+TGG + chr4_1:77435660-77435679 None:intergenic 45.0%
ATATTAGGGTCGACCCATTG+TGG - chr4_1:77435671-77435690 Msa0574060:CDS 45.0%
GTTGTTGCCAACTCTGTAGT+AGG + chr4_1:77435926-77435945 None:intergenic 45.0%
GTTTATTTGGTTGGAAGGCG+AGG - chr4_1:77436076-77436095 Msa0574060:intron 45.0%
! TTTTGCAGTGCAAGCTGCTT+GGG + chr4_1:77436107-77436126 None:intergenic 45.0%
ACCTCAAGACCAATACATGC+TGG - chr4_1:77436943-77436962 Msa0574060:intron 45.0%
!! ACCAGCATGTATTGGTCTTG+AGG + chr4_1:77436947-77436966 None:intergenic 45.0%
!!! GATTTTATAGGTGTTGGCCC+TGG - chr4_1:77437621-77437640 Msa0574060:intron 45.0%
!! CCAACGGCAATTTGTTTTCC+AGG + chr4_1:77437642-77437661 None:intergenic 45.0%
CCTGGAAAACAAATTGCCGT+TGG - chr4_1:77437639-77437658 Msa0574060:intron 45.0%
! CTGATTACATTGCCACTTGC+TGG - chr4_1:77438021-77438040 Msa0574060:intron 45.0%
!! TTGCTGGCTTGTTTGTAGGA+TGG - chr4_1:77438037-77438056 Msa0574060:intron 45.0%
TCCGGTAAAGATTACAGGCT+TGG - chr4_1:77438228-77438247 Msa0574060:intron 45.0%
CCCAAGCCTGTAATCTTTAC+CGG + chr4_1:77438232-77438251 None:intergenic 45.0%
CCGGTAAAGATTACAGGCTT+GGG - chr4_1:77438229-77438248 Msa0574060:intron 45.0%
TCCGGTAAAGATTACAGGCT+TGG - chr4_1:77438228-77438247 Msa0574060:intron 45.0%
CCCAAGCCTGTAATCTTTAC+CGG + chr4_1:77438232-77438251 None:intergenic 45.0%
CCGGTAAAGATTACAGGCTT+GGG - chr4_1:77438229-77438248 Msa0574060:intron 45.0%
AACAGAGCCTAAGTCGGATA+TGG + chr4_1:77438456-77438475 None:intergenic 45.0%
TATCCGACTTAGGCTCTGTT+TGG - chr4_1:77438456-77438475 Msa0574060:intron 45.0%
CACGAATACACAAGTGCAAG+TGG + chr4_1:77438913-77438932 None:intergenic 45.0%
GAAGAGGGCTTGTATGTATG+CGG - chr4_1:77439280-77439299 Msa0574060:intron 45.0%
TAGGTTTGTCGCAACAATCC+CGG + chr4_1:77439326-77439345 None:intergenic 45.0%
ACTTCTTGACGAACACACCT+AGG + chr4_1:77439848-77439867 None:intergenic 45.0%
TTTCCTCGTGAAGTGGGATT+TGG + chr4_1:77440207-77440226 None:intergenic 45.0%
CAGAATGTTTCCTCGTGAAG+TGG + chr4_1:77440214-77440233 None:intergenic 45.0%
CTGCTGACAATTGACATGGT+AGG - chr4_1:77440775-77440794 Msa0574060:intron 45.0%
! GACTCTGAAGAAAAGAGGCT+TGG - chr4_1:77440938-77440957 Msa0574060:intron 45.0%
TGTCAGTAGTTCATTCCAGG+TGG + chr4_1:77440996-77441015 None:intergenic 45.0%
AGCTGTCAGTAGTTCATTCC+AGG + chr4_1:77440999-77441018 None:intergenic 45.0%
GGAATGATCAGTTCCTTCTG+AGG + chr4_1:77441023-77441042 None:intergenic 45.0%
!!! ACTATTTAATAAATAATTTT+AGG - chr4_1:77440038-77440057 Msa0574060:intron 5.0%
!!! CTATTTAATAAATAATTTTA+GGG - chr4_1:77440039-77440058 Msa0574060:intron 5.0%
CCAACAACACACACTCGCAA+AGG + chr4_1:77434287-77434306 None:intergenic 50.0%
CCTTTGCGAGTGTGTGTTGT+TGG - chr4_1:77434284-77434303 Msa0574060:three_prime_UTR 50.0%
! CGAGTGTGTGTTGTTGGAAG+TGG - chr4_1:77434290-77434309 Msa0574060:three_prime_UTR 50.0%
! AGAGAGCTAGCTTGCCTTCT+CGG + chr4_1:77434336-77434355 None:intergenic 50.0%
ACCCGATCACCCTGAAACTA+AGG - chr4_1:77434511-77434530 Msa0574060:three_prime_UTR 50.0%
! GACGCCACGTAATGGGAAAA+AGG - chr4_1:77434875-77434894 Msa0574060:intron 50.0%
GTTGCGCCACCCTTGAAAAT+TGG + chr4_1:77435018-77435037 None:intergenic 50.0%
GAGCAGGTTGTCCTTGCATA+TGG - chr4_1:77435215-77435234 Msa0574060:intron 50.0%
!! TGGTATAATGGGCACCCAGA+TGG - chr4_1:77435404-77435423 Msa0574060:intron 50.0%
! CTTTTGCAGTGCAAGCTGCT+TGG + chr4_1:77436108-77436127 None:intergenic 50.0%
TGTTTGGCAAGGGACTACGT+TGG - chr4_1:77436242-77436261 Msa0574060:CDS 50.0%
CCTACAAACAAGCCAGCAAG+TGG + chr4_1:77438036-77438055 None:intergenic 50.0%
!! CCACTTGCTGGCTTGTTTGT+AGG - chr4_1:77438033-77438052 Msa0574060:intron 50.0%
TCAAAAGGCAGGCCATCTAC+CGG + chr4_1:77438092-77438111 None:intergenic 50.0%
ACTGCTAAGGGTCTGTTTGC+AGG + chr4_1:77438805-77438824 None:intergenic 50.0%
AGGGCTTGTATGTATGCGGT+TGG - chr4_1:77439284-77439303 Msa0574060:intron 50.0%
TTTGTCGCAACAATCCCGGT+TGG + chr4_1:77439322-77439341 None:intergenic 50.0%
ATGGCTGAAAAATCCCCTCG+AGG - chr4_1:77439939-77439958 Msa0574060:intron 50.0%
TGACCAAATCCCACTTCACG+AGG - chr4_1:77440201-77440220 Msa0574060:CDS 50.0%
TAACAACAGGGAAGAGGGAG+AGG - chr4_1:77440714-77440733 Msa0574060:intron 50.0%
!!! CAGGTGGCTAGTTTTTCCCT+AGG + chr4_1:77440980-77440999 None:intergenic 50.0%
CTAGGGAAAAACTAGCCACC+TGG - chr4_1:77440978-77440997 Msa0574060:intron 50.0%
CTACTGACAGCTACCTCAGA+AGG - chr4_1:77441007-77441026 Msa0574060:intron 50.0%
GTTGTTGGAAGTGGACCTGC+CGG - chr4_1:77434299-77434318 Msa0574060:three_prime_UTR 55.0%
CTTCTCGGCAGTGTAGCAAC+CGG + chr4_1:77434321-77434340 None:intergenic 55.0%
! ATTGCCTACGCCTTTCGGGT+TGG - chr4_1:77434472-77434491 Msa0574060:three_prime_UTR 55.0%
ATTCGTGCATGCCTTCGAGC+AGG - chr4_1:77435199-77435218 Msa0574060:intron 55.0%
TGCAAGGACAACCTGCTCGA+AGG + chr4_1:77435213-77435232 None:intergenic 55.0%
! TGGTCTTGAGGTAGCTGCCT+TGG + chr4_1:77436935-77436954 None:intergenic 55.0%
!! GACAGTACTGGCCACGTATC+TGG - chr4_1:77437030-77437049 Msa0574060:intron 55.0%
! GTATGCGGTTGGCTGAAGAG+AGG - chr4_1:77439295-77439314 Msa0574060:intron 55.0%
TGGCTGAAGAGAGGACCAAC+CGG - chr4_1:77439304-77439323 Msa0574060:intron 55.0%
TCAGTTCCGTGTCCCAGATC+CGG - chr4_1:77439801-77439820 Msa0574060:intron 55.0%
GGAGAATCTACCCCGGATCT+GGG + chr4_1:77439816-77439835 None:intergenic 55.0%
TGGAGAATCTACCCCGGATC+TGG + chr4_1:77439817-77439836 None:intergenic 55.0%
GAAAAATCCCCTCGAGGCAG+AGG - chr4_1:77439945-77439964 Msa0574060:intron 55.0%
TCAACAGCCGCACCAAAACC+AGG - chr4_1:77440842-77440861 Msa0574060:intron 55.0%
CGGTTGCTACACTGCCGAGA+AGG - chr4_1:77434319-77434338 Msa0574060:three_prime_UTR 60.0%
! CGAACCAACCCGAAAGGCGT+AGG + chr4_1:77434479-77434498 None:intergenic 60.0%
!! CCTTTCGGGTTGGTTCGCTC+CGG - chr4_1:77434482-77434501 Msa0574060:three_prime_UTR 60.0%
AGGGTGATCGGGTGCAACAC+CGG + chr4_1:77434504-77434523 None:intergenic 60.0%
CAAAGCGCACGCCAGATACG+TGG + chr4_1:77437044-77437063 None:intergenic 60.0%
GGCTGAAGAGAGGACCAACC+GGG - chr4_1:77439305-77439324 Msa0574060:intron 60.0%
CAGTTCCGTGTCCCAGATCC+GGG - chr4_1:77439802-77439821 Msa0574060:intron 60.0%
AGTTCCGTGTCCCAGATCCG+GGG - chr4_1:77439803-77439822 Msa0574060:intron 60.0%
! TCTACCCCGGATCTGGGACA+CGG + chr4_1:77439810-77439829 None:intergenic 60.0%
AAATCCCCTCGAGGCAGAGG+AGG - chr4_1:77439948-77439967 Msa0574060:intron 60.0%
TGCTACCTCCTCTGCCTCGA+GGG + chr4_1:77439956-77439975 None:intergenic 60.0%
ATGCTACCTCCTCTGCCTCG+AGG + chr4_1:77439957-77439976 None:intergenic 60.0%
AGCCGCACCAAAACCAGGCA+GGG - chr4_1:77440847-77440866 Msa0574060:intron 60.0%
!!! GTCCCTGCCTGGTTTTGGTG+CGG + chr4_1:77440852-77440871 None:intergenic 60.0%
GCACCAAAACCAGGCAGGGA+CGG - chr4_1:77440851-77440870 Msa0574060:intron 60.0%
! AGACCGTCCCTGCCTGGTTT+TGG + chr4_1:77440857-77440876 None:intergenic 60.0%
TCCTCGCGCCGTCGTTTCTC+CGG - chr4_1:77434156-77434175 Msa0574060:three_prime_UTR 65.0%
GGGGCGTACCGGAGAAACGA+CGG + chr4_1:77434167-77434186 None:intergenic 65.0%
TCGGCAGTGTAGCAACCGGC+AGG + chr4_1:77434317-77434336 None:intergenic 65.0%
CCGGAGCGAACCAACCCGAA+AGG + chr4_1:77434485-77434504 None:intergenic 65.0%
GCAGTGCAAGCTGCTTGGGC+TGG + chr4_1:77436103-77436122 None:intergenic 65.0%
GCTACCTCCTCTGCCTCGAG+GGG + chr4_1:77439955-77439974 None:intergenic 65.0%
CAGCCGCACCAAAACCAGGC+AGG - chr4_1:77440846-77440865 Msa0574060:intron 65.0%
TTGAGGAGACCGTCCCTGCC+TGG + chr4_1:77440863-77440882 None:intergenic 65.0%
ACCGGAGAAACGACGGCGCG+AGG + chr4_1:77434160-77434179 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 77434156 77441438 77434156 ID=Msa0574060;Name=Msa0574060
chr4_1 mRNA 77434156 77441438 77434156 ID=Msa0574060-mRNA-1;Parent=Msa0574060;Name=Msa0574060-mRNA-1;_AED=0.19;_eAED=0.19;_QI=53|0.68|0.76|0.94|1|1|17|390|640
chr4_1 exon 77434156 77434797 77434156 ID=Msa0574060-mRNA-1:exon:27315;Parent=Msa0574060-mRNA-1
chr4_1 exon 77435290 77435346 77435290 ID=Msa0574060-mRNA-1:exon:27314;Parent=Msa0574060-mRNA-1
chr4_1 exon 77435471 77435498 77435471 ID=Msa0574060-mRNA-1:exon:27313;Parent=Msa0574060-mRNA-1
chr4_1 exon 77435618 77435893 77435618 ID=Msa0574060-mRNA-1:exon:27312;Parent=Msa0574060-mRNA-1
chr4_1 exon 77435979 77436049 77435979 ID=Msa0574060-mRNA-1:exon:27311;Parent=Msa0574060-mRNA-1
chr4_1 exon 77436231 77436373 77436231 ID=Msa0574060-mRNA-1:exon:27310;Parent=Msa0574060-mRNA-1
chr4_1 exon 77437472 77437539 77437472 ID=Msa0574060-mRNA-1:exon:27309;Parent=Msa0574060-mRNA-1
chr4_1 exon 77437903 77437963 77437903 ID=Msa0574060-mRNA-1:exon:27308;Parent=Msa0574060-mRNA-1
chr4_1 exon 77438513 77438711 77438513 ID=Msa0574060-mRNA-1:exon:27307;Parent=Msa0574060-mRNA-1
chr4_1 exon 77438896 77438957 77438896 ID=Msa0574060-mRNA-1:exon:27306;Parent=Msa0574060-mRNA-1
chr4_1 exon 77439449 77439522 77439449 ID=Msa0574060-mRNA-1:exon:27305;Parent=Msa0574060-mRNA-1
chr4_1 exon 77439601 77439710 77439601 ID=Msa0574060-mRNA-1:exon:27304;Parent=Msa0574060-mRNA-1
chr4_1 exon 77440113 77440229 77440113 ID=Msa0574060-mRNA-1:exon:27303;Parent=Msa0574060-mRNA-1
chr4_1 exon 77440320 77440373 77440320 ID=Msa0574060-mRNA-1:exon:27302;Parent=Msa0574060-mRNA-1
chr4_1 exon 77440477 77440590 77440477 ID=Msa0574060-mRNA-1:exon:27301;Parent=Msa0574060-mRNA-1
chr4_1 exon 77441062 77441166 77441062 ID=Msa0574060-mRNA-1:exon:27300;Parent=Msa0574060-mRNA-1
chr4_1 exon 77441254 77441438 77441254 ID=Msa0574060-mRNA-1:exon:27299;Parent=Msa0574060-mRNA-1
chr4_1 five_prime_UTR 77441386 77441438 77441386 ID=Msa0574060-mRNA-1:five_prime_utr;Parent=Msa0574060-mRNA-1
chr4_1 CDS 77441254 77441385 77441254 ID=Msa0574060-mRNA-1:cds;Parent=Msa0574060-mRNA-1
chr4_1 CDS 77441062 77441166 77441062 ID=Msa0574060-mRNA-1:cds;Parent=Msa0574060-mRNA-1
chr4_1 CDS 77440477 77440590 77440477 ID=Msa0574060-mRNA-1:cds;Parent=Msa0574060-mRNA-1
chr4_1 CDS 77440320 77440373 77440320 ID=Msa0574060-mRNA-1:cds;Parent=Msa0574060-mRNA-1
chr4_1 CDS 77440113 77440229 77440113 ID=Msa0574060-mRNA-1:cds;Parent=Msa0574060-mRNA-1
chr4_1 CDS 77439601 77439710 77439601 ID=Msa0574060-mRNA-1:cds;Parent=Msa0574060-mRNA-1
chr4_1 CDS 77439449 77439522 77439449 ID=Msa0574060-mRNA-1:cds;Parent=Msa0574060-mRNA-1
chr4_1 CDS 77438896 77438957 77438896 ID=Msa0574060-mRNA-1:cds;Parent=Msa0574060-mRNA-1
chr4_1 CDS 77438513 77438711 77438513 ID=Msa0574060-mRNA-1:cds;Parent=Msa0574060-mRNA-1
chr4_1 CDS 77437903 77437963 77437903 ID=Msa0574060-mRNA-1:cds;Parent=Msa0574060-mRNA-1
chr4_1 CDS 77437472 77437539 77437472 ID=Msa0574060-mRNA-1:cds;Parent=Msa0574060-mRNA-1
chr4_1 CDS 77436231 77436373 77436231 ID=Msa0574060-mRNA-1:cds;Parent=Msa0574060-mRNA-1
chr4_1 CDS 77435979 77436049 77435979 ID=Msa0574060-mRNA-1:cds;Parent=Msa0574060-mRNA-1
chr4_1 CDS 77435618 77435893 77435618 ID=Msa0574060-mRNA-1:cds;Parent=Msa0574060-mRNA-1
chr4_1 CDS 77435471 77435498 77435471 ID=Msa0574060-mRNA-1:cds;Parent=Msa0574060-mRNA-1
chr4_1 CDS 77435290 77435346 77435290 ID=Msa0574060-mRNA-1:cds;Parent=Msa0574060-mRNA-1
chr4_1 CDS 77434546 77434797 77434546 ID=Msa0574060-mRNA-1:cds;Parent=Msa0574060-mRNA-1
chr4_1 three_prime_UTR 77434156 77434545 77434156 ID=Msa0574060-mRNA-1:three_prime_utr;Parent=Msa0574060-mRNA-1
Gene Sequence

>Msa0574060

ATGCTAAAAACGAGAATTTTCCAATCAAGAAAGTTTCTTTGTAGAAGCTTCTCGAACATTCTTCTTCATTCAGAGCCTTTGCGAGTGTGTGTTGTTGGAAGTGGACCTGCCGGTTGCTACACTGCCGAGAAGATGTTGAAGGCGCGTCAACAAGCACAAGTTGATATCATTGATAGATTGCCTACGCCTTTCGGGTTGGTTCGCTCCGGTGTTGCACCCGATCACCCTGAAACTAAGATTGTCGTCAACCAATTTTCAAGGGTGGCGCAACATGAACGATGCTCATTTTTTGGAAATGTGACGCTTGGATCCAACGTATCTCTTGCTGAATTGCGCAAGCTGTATCATGTGGTTGTCCTTGCATATGGTGCTGAAAGTGACAGAAGTCTTGGAATTCCTGGAGAAAACTTAAAAGGAATACTATCAGCCAGAGAATTTGTTTGGTGGTATAATGGGCACCCAGATGGACGAAATCTTGATCCAGACCTGAAGAGCATTGATACAGCTGTAATTCTTGGTCAGGGGAATGTTGCTTTAGATGTTGCGCGTATTCTTTTACGACCTACTACAGAGTTGGCAACAACTGATATTGCCAGTCATGCTTTGTCTACTTTAGAAGAGAGCTCTATCAGGGTAGTTTATTTGGTTGGAAGGCGAGGTCCAGCCCAAGCAGCTTGCACTGCAAAAGAGCTACGTGAAGTTCTAGGTATTAAGAATCTTGATGTTTCCATACAGGAATCTGATCTACATCTAACTCCAACTGATGAGGAAGAGCTTAAGAGCAACCGAATACACAGAAGAATTTTTGAGTTGCTATCCAAGGCAGCTACCTCAAGACCAATACATGCTGGTTTGAACCAACGTCAACTTCGTTTTGTCTTCTTCCGTAAGCCAGATAGTTTTCAAGAATCAAAAGACAGTACTGGCCACGTATCTGGCGTGCGCTTTGAGAAGACAGTTCTTAAAGGTGTTGGCCCTGGAAAACAAATTGCCGTTGGTACTGGAGAATTTGAAGATTTAAAATGCGGGATGGTTCTTAAGAGCATTGGTTATAAATCAGTACCGGTAGATGGCCTGCCTTTTGATCATAAGAAAGGTATAGTTCCAAATGATAAAGGTCGAGTGTTGAGTGACACTTCAGATACTGCAGTTCTTGAAGAGGGCTTGTATGTATGCGGTTGGCTGAAGAGAGGACCAACCGGGATTGTTGCGACAAACCTATATTGTGCTGAAGAAACTGTTCAACTTCAAACATATAATGCATTTTTCTCATGTTATGTACCTGAAGTTCTTCTTCATTGTTCCTATGTCCTCTTAAACCCTTATTTCTCGATTCCCAATTCTGAGTTCATTCAAATTCTTCGACTTTCTAATTGCTTTGATCCTAGTCAAACTCTTGTTTTCTCATTTTCAGTTCCGTGTCCCAGATCCGGGGTAGATTCTCCACAATATGTCCTAGGTGTGTTCGTCAAGAAGTCATTTACACTAGATCCTTTCCTTGCTAGTTTAGTGGACAAGATTATAATAGGTCCTTTCAATGGCAATTACATGGCTGAAAAATCCCCTCGAGGCAGAGGAGGTAGCATGGAGTTTGCTAAAATACAGCCATGTCAATTCTATACTTCTATTTCAGCAGCATGCATATTGGATGCGATATTGGGGACACTGATTGTTTCGAGCATATTAGAAGACCTTGAGAAAGGTGGTTTGATTTCTTCAACAGCCGCACCAAAACCAGGCAGGGACGGTCTCCTCAATCTTTTGCATGATAGAAACGTTAGGATAGTTTCATTCAATGATTGGGAAAAGATAGACTCTGAAGAAAAGAGGCTTGGTAGTTTAAGGAACAAGCCTAGGGAAAAACTAGCCACCTGGAATGAACTACTGACAGCTACCTCAGAAGGAACTGATCATTCCACGTGA

Protein sequence

>Msa0574060

MLKTRIFQSRKFLCRSFSNILLHSEPLRVCVVGSGPAGCYTAEKMLKARQQAQVDIIDRLPTPFGLVRSGVAPDHPETKIVVNQFSRVAQHERCSFFGNVTLGSNVSLAELRKLYHVVVLAYGAESDRSLGIPGENLKGILSAREFVWWYNGHPDGRNLDPDLKSIDTAVILGQGNVALDVARILLRPTTELATTDIASHALSTLEESSIRVVYLVGRRGPAQAACTAKELREVLGIKNLDVSIQESDLHLTPTDEEELKSNRIHRRIFELLSKAATSRPIHAGLNQRQLRFVFFRKPDSFQESKDSTGHVSGVRFEKTVLKGVGPGKQIAVGTGEFEDLKCGMVLKSIGYKSVPVDGLPFDHKKGIVPNDKGRVLSDTSDTAVLEEGLYVCGWLKRGPTGIVATNLYCAEETVQLQTYNAFFSCYVPEVLLHCSYVLLNPYFSIPNSEFIQILRLSNCFDPSQTLVFSFSVPCPRSGVDSPQYVLGVFVKKSFTLDPFLASLVDKIIIGPFNGNYMAEKSPRGRGGSMEFAKIQPCQFYTSISAACILDAILGTLIVSSILEDLEKGGLISSTAAPKPGRDGLLNLLHDRNVRIVSFNDWEKIDSEEKRLGSLRNKPREKLATWNELLTATSEGTDHST*