Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0574060 | KEH21347.1 | 90.949 | 453 | 35 | 3 | 1 | 453 | 1 | 447 | 0.0 | 830 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0574060 | sp|Q8W3L1|MFDR_ARATH | 72.439 | 410 | 109 | 3 | 7 | 414 | 4 | 411 | 0.0 | 601 |
Msa0574060 | sp|Q8W3L1|MFDR_ARATH | 52.632 | 76 | 32 | 1 | 558 | 633 | 411 | 482 | 9.62e-14 | 77.8 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0574060 | A0A072TV98 | 90.949 | 453 | 35 | 3 | 1 | 453 | 1 | 447 | 0.0 | 830 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0140510 | Msa0574060 | 0.804012 | 2.649391e-49 | -8.615850e-47 |
Msa0190120 | Msa0574060 | -0.813379 | 2.637533e-51 | -8.615850e-47 |
Msa0380100 | Msa0574060 | -0.802190 | 6.310996e-49 | -8.615850e-47 |
Msa0457510 | Msa0574060 | -0.815549 | 8.734479e-52 | -8.615850e-47 |
Msa0271890 | Msa0574060 | -0.801793 | 7.614402e-49 | -8.615850e-47 |
Msa0284450 | Msa0574060 | -0.803440 | 3.482102e-49 | -8.615850e-47 |
Msa0310860 | Msa0574060 | -0.802279 | 6.049144e-49 | -8.615850e-47 |
Msa0574060 | Msa0643320 | -0.810566 | 1.081382e-50 | -8.615850e-47 |
Msa0574060 | Msa0668460 | 0.803520 | 3.352694e-49 | -8.615850e-47 |
Msa0574060 | Msa0683140 | -0.803618 | 3.199041e-49 | -8.615850e-47 |
Msa0574060 | Msa0683600 | -0.827660 | 1.384064e-54 | -8.615850e-47 |
Msa0574060 | Msa0924150 | 0.809961 | 1.460951e-50 | -8.615850e-47 |
Msa0574060 | Msa0963090 | 0.821580 | 3.743284e-53 | -8.615850e-47 |
Msa0574060 | Msa0980020 | -0.816409 | 5.613371e-52 | -8.615850e-47 |
Msa0574060 | Msa0994370 | -0.814531 | 1.469185e-51 | -8.615850e-47 |
Msa0574060 | Msa1029080 | 0.802772 | 4.788209e-49 | -8.615850e-47 |
Msa0574060 | Msa1080330 | 0.803828 | 2.893074e-49 | -8.615850e-47 |
Msa0574060 | Msa1081790 | 0.812107 | 5.007719e-51 | -8.615850e-47 |
Msa0574060 | Msa1113230 | 0.837254 | 5.792649e-57 | -8.615850e-47 |
Msa0574060 | Msa1129060 | 0.803937 | 2.746978e-49 | -8.615850e-47 |
Msa0574060 | Msa1156150 | 0.805012 | 1.639136e-49 | -8.615850e-47 |
Msa0574060 | Msa1156170 | 0.800545 | 1.370739e-48 | -8.615850e-47 |
Msa0574060 | Msa1166090 | 0.820094 | 8.223784e-53 | -8.615850e-47 |
Msa0574060 | Msa1188600 | 0.819522 | 1.111081e-52 | -8.615850e-47 |
Msa0574060 | Msa1207350 | -0.805957 | 1.038753e-49 | -8.615850e-47 |
Msa0574060 | Msa1242580 | 0.814898 | 1.218753e-51 | -8.615850e-47 |
Msa0574060 | Msa1270660 | -0.807058 | 6.083796e-50 | -8.615850e-47 |
Msa0574060 | Msa1293480 | 0.802790 | 4.745399e-49 | -8.615850e-47 |
Msa0574060 | Msa1371090 | -0.803925 | 2.761919e-49 | -8.615850e-47 |
Msa0574060 | Msa1396400 | 0.819293 | 1.253142e-52 | -8.615850e-47 |
Msa0574060 | Msa1417810 | 0.801358 | 9.348183e-49 | -8.615850e-47 |
Msa0574060 | Msa1445400 | 0.801777 | 7.673560e-49 | -8.615850e-47 |
Msa0574060 | Msa1459760 | 0.824111 | 9.636451e-54 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0574060 | MtrunA17_Chr8g0390291 | 97.826 | 414 | 8 | 1 | 1 | 414 | 1 | 413 | 0.0 | 830 |
Msa0574060 | MtrunA17_Chr8g0390291 | 98.795 | 83 | 1 | 0 | 558 | 640 | 413 | 495 | 1.55e-45 | 169 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0574060 | AT4G32360.1 | 72.439 | 410 | 109 | 3 | 7 | 414 | 4 | 411 | 0.0 | 601 |
Msa0574060 | AT4G32360.1 | 52.632 | 76 | 32 | 1 | 558 | 633 | 411 | 482 | 9.78e-15 | 77.8 |
Msa0574060 | AT4G32360.8 | 72.439 | 410 | 109 | 3 | 7 | 414 | 4 | 411 | 0.0 | 599 |
Msa0574060 | AT4G32360.2 | 72.022 | 361 | 98 | 2 | 7 | 366 | 4 | 362 | 0.0 | 526 |
Msa0574060 | AT4G32360.7 | 72.575 | 299 | 80 | 2 | 118 | 414 | 5 | 303 | 3.60e-149 | 436 |
Msa0574060 | AT4G32360.7 | 52.632 | 76 | 32 | 1 | 558 | 633 | 303 | 374 | 6.51e-15 | 77.4 |
Msa0574060 | AT4G32360.5 | 71.277 | 282 | 79 | 2 | 135 | 414 | 18 | 299 | 1.43e-137 | 404 |
Msa0574060 | AT4G32360.9 | 71.277 | 282 | 79 | 2 | 135 | 414 | 12 | 293 | 1.69e-137 | 406 |
Msa0574060 | AT4G32360.9 | 52.632 | 76 | 32 | 1 | 558 | 633 | 293 | 364 | 5.63e-15 | 77.4 |
Msa0574060 | AT4G32360.6 | 71.277 | 282 | 79 | 2 | 135 | 414 | 18 | 299 | 3.31e-137 | 406 |
Msa0574060 | AT4G32360.6 | 52.632 | 76 | 32 | 1 | 558 | 633 | 299 | 370 | 6.54e-15 | 77.4 |
Msa0574060 | AT4G32360.3 | 70.386 | 233 | 68 | 1 | 135 | 366 | 18 | 250 | 9.44e-110 | 331 |
Msa0574060 | AT4G32360.4 | 70.386 | 233 | 68 | 1 | 135 | 366 | 18 | 250 | 9.44e-110 | 331 |
Find 158 sgRNAs with CRISPR-Local
Find 458 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAGCTTTCTTTCAATTATT+TGG | 0.132478 | 4_1:+77434491 | None:intergenic |
AAAAGAGGCTTGGTAGTTTA+AGG | 0.175028 | 4_1:-77434624 | Msa0574060:CDS |
ATACTACAGGGTAGTTTATT+TGG | 0.186560 | 4_1:-77439509 | Msa0574060:intron |
ATAGATTGCCTACGCCTTTC+GGG | 0.204141 | 4_1:-77441104 | Msa0574060:CDS |
TTTGAGAAGACAGTTCTTAA+AGG | 0.222287 | 4_1:-77438512 | Msa0574060:intron |
TTGTCTTCTCAGAACTTAAA+AGG | 0.230978 | 4_1:-77440219 | Msa0574060:intron |
ATTGATACAGCTGTAATTCT+TGG | 0.257050 | 4_1:-77440117 | Msa0574060:CDS |
TGCATATTGGATGCGATATT+GGG | 0.259148 | 4_1:-77435300 | Msa0574060:CDS |
TAAAATTGGACCTTAGTTTC+AGG | 0.262640 | 4_1:+77441051 | None:intergenic |
GATAGATTGCCTACGCCTTT+CGG | 0.274019 | 4_1:-77441105 | Msa0574060:CDS |
ATGCATATTGGATGCGATAT+TGG | 0.279426 | 4_1:-77435301 | Msa0574060:CDS |
AGACCGTCCCTGCCTGGTTT+TGG | 0.292557 | 4_1:+77434718 | None:intergenic |
GAATTTGTTTGGTGGTATAA+TGG | 0.296116 | 4_1:-77440180 | Msa0574060:CDS |
GTTGCGCCACCCTTGAAAAT+TGG | 0.303565 | 4_1:+77440557 | None:intergenic |
TCCTTTCCTTGCTAGTTTAG+TGG | 0.310664 | 4_1:-77435691 | Msa0574060:CDS |
TACAAAGAAACTTTCTTGAT+TGG | 0.312498 | 4_1:+77441343 | None:intergenic |
GGATCAAGATTTCGTCCATC+TGG | 0.325395 | 4_1:+77440153 | None:intergenic |
TTTGATTCTTGAAAACTATC+TGG | 0.326046 | 4_1:+77438566 | None:intergenic |
AACACTCGACCTTTATCATT+TGG | 0.326962 | 4_1:+77436343 | None:intergenic |
AAAGAGCTACGTGAAGTTCT+AGG | 0.331388 | 4_1:-77439448 | Msa0574060:intron |
GCAGTGCAAGCTGCTTGGGC+TGG | 0.333847 | 4_1:+77439472 | None:intergenic |
CAGCTGTATCAATGCTCTTC+AGG | 0.339337 | 4_1:+77440127 | None:intergenic |
AATTTGAATGAACTCAGAAT+TGG | 0.345482 | 4_1:+77435845 | None:intergenic |
AGAGAGCTAGCTTGCCTTCT+CGG | 0.345567 | 4_1:+77441239 | None:intergenic |
AATTTGTTTGGTGGTATAAT+GGG | 0.352993 | 4_1:-77440179 | Msa0574060:CDS |
CTTTAGAAGAGAGCTCTATC+AGG | 0.354761 | 4_1:-77439600 | Msa0574060:intron |
CAGTTTCTTCAGCACAATAT+AGG | 0.355642 | 4_1:+77436230 | None:intergenic |
GAATTGGGAATCGAGAAATA+AGG | 0.356495 | 4_1:+77435861 | None:intergenic |
TGGAGAATCTACCCCGGATC+TGG | 0.356637 | 4_1:+77435758 | None:intergenic |
GACAGTACTGGCCACGTATC+TGG | 0.359280 | 4_1:-77438542 | Msa0574060:CDS |
GACAGAAGTCTTGGAATTCC+TGG | 0.360873 | 4_1:-77440324 | Msa0574060:CDS |
TATCAGCCAGAGAATTTGTT+TGG | 0.368879 | 4_1:-77440191 | Msa0574060:CDS |
CTTTCACATTACACACTCAT+TGG | 0.373306 | 4_1:-77434472 | Msa0574060:three_prime_UTR |
GGATAGTTTCATTCAATGAT+TGG | 0.375115 | 4_1:-77434666 | Msa0574060:CDS |
TTAGTGGACAAGATTATAAT+AGG | 0.375250 | 4_1:-77435675 | Msa0574060:CDS |
TCAGTTCCGTGTCCCAGATC+CGG | 0.382593 | 4_1:-77435771 | Msa0574060:CDS |
TTTAATACAAAACAGTATAC+AGG | 0.389841 | 4_1:+77434275 | None:intergenic |
CAGTTCCGTGTCCCAGATCC+GGG | 0.393062 | 4_1:-77435770 | Msa0574060:CDS |
TATTTCAGCAGCATGCATAT+TGG | 0.394078 | 4_1:-77435313 | Msa0574060:CDS |
GAGCAGGTTGTCCTTGCATA+TGG | 0.396211 | 4_1:-77440357 | Msa0574060:intron |
AAACAAATTGCCGTTGGTAC+TGG | 0.400619 | 4_1:-77437927 | Msa0574060:CDS |
AAAATTGGACCTTAGTTTCA+GGG | 0.410842 | 4_1:+77441052 | None:intergenic |
GAATCTTGATGTTTCCATAC+AGG | 0.417255 | 4_1:-77438928 | Msa0574060:CDS |
AATTGGGAATCGAGAAATAA+GGG | 0.421807 | 4_1:+77435862 | None:intergenic |
GTATCAATGCTCTTCAGGTC+TGG | 0.422431 | 4_1:+77440132 | None:intergenic |
CGAGTGTGTGTTGTTGGAAG+TGG | 0.422589 | 4_1:-77441282 | Msa0574060:CDS |
GACCTTAGTTTCAGGGTGAT+CGG | 0.425052 | 4_1:+77441059 | None:intergenic |
CCTTTGCGAGTGTGTGTTGT+TGG | 0.425734 | 4_1:-77441288 | Msa0574060:CDS |
TACAGCTGTAATTCTTGGTC+AGG | 0.426936 | 4_1:-77440112 | Msa0574060:intron |
GATAGTTTCATTCAATGATT+GGG | 0.431725 | 4_1:-77434665 | Msa0574060:CDS |
GAACAATGAAGAAGAACTTC+AGG | 0.433107 | 4_1:+77435985 | None:intergenic |
ACCTTAGTTTCAGGGTGATC+GGG | 0.435537 | 4_1:+77441060 | None:intergenic |
AGCTGTCAGTAGTTCATTCC+AGG | 0.435571 | 4_1:+77434576 | None:intergenic |
TCCTCGCGCCGTCGTTTCTC+CGG | 0.436614 | 4_1:-77441416 | Msa0574060:five_prime_UTR |
ACCCGATCACCCTGAAACTA+AGG | 0.439947 | 4_1:-77441061 | Msa0574060:intron |
GGTATAGTTCCAAATGATAA+AGG | 0.441163 | 4_1:-77436352 | Msa0574060:CDS |
CTTGAAAACTATCTGGCTTA+CGG | 0.447487 | 4_1:+77438573 | None:intergenic |
ATTTGAATGAACTCAGAATT+GGG | 0.448999 | 4_1:+77435846 | None:intergenic |
TATAAATCAGTACCGGTAGA+TGG | 0.453019 | 4_1:-77437495 | Msa0574060:CDS |
TCACCTTTCTTATGATCAAA+AGG | 0.456555 | 4_1:+77437468 | None:intergenic |
TGGTTCAAACCAGCATGTAT+TGG | 0.466762 | 4_1:+77438620 | None:intergenic |
ATACCACCAAACAAATTCTC+TGG | 0.469276 | 4_1:+77440185 | None:intergenic |
TGCTACCTCCTCTGCCTCGA+GGG | 0.469655 | 4_1:+77435619 | None:intergenic |
TGGTCTTGAGGTAGCTGCCT+TGG | 0.470004 | 4_1:+77438640 | None:intergenic |
TGGCTGAAGAGAGGACCAAC+CGG | 0.471966 | 4_1:-77436268 | Msa0574060:CDS |
TTAATGTGTACAATGAACTA+TGG | 0.473727 | 4_1:+77434183 | None:intergenic |
TTCTATCATGCAAAAGATTG+AGG | 0.477423 | 4_1:+77434695 | None:intergenic |
TACAGGGTAGTTTATTTGGT+TGG | 0.478498 | 4_1:-77439505 | Msa0574060:intron |
CAGCCGCACCAAAACCAGGC+AGG | 0.483499 | 4_1:-77434726 | Msa0574060:CDS |
TAAAGTAGACAAAGCATGAC+TGG | 0.484133 | 4_1:+77439618 | None:intergenic |
TCCTTTCAATGGCAATTACA+TGG | 0.484316 | 4_1:-77435652 | Msa0574060:CDS |
ATTATAATAGGTCCTTTCAA+TGG | 0.488591 | 4_1:-77435663 | Msa0574060:CDS |
TCGAGAAATAAGGGTTTAAG+AGG | 0.489851 | 4_1:+77435871 | None:intergenic |
TCAATTTATACCTCATCAGT+TGG | 0.496085 | 4_1:+77438885 | None:intergenic |
TTGAGGAGACCGTCCCTGCC+TGG | 0.497823 | 4_1:+77434712 | None:intergenic |
CTTCTCGGCAGTGTAGCAAC+CGG | 0.498236 | 4_1:+77441254 | None:intergenic |
CAAGAATCAAAAGACAGTAC+TGG | 0.501673 | 4_1:-77438554 | Msa0574060:CDS |
GTAGTTTAAGGAACAAGCCT+AGG | 0.504331 | 4_1:-77434612 | Msa0574060:CDS |
GACTCTGAAGAAAAGAGGCT+TGG | 0.504824 | 4_1:-77434634 | Msa0574060:CDS |
AGGATGGTTCTTAAGAGCAT+TGG | 0.510487 | 4_1:-77437519 | Msa0574060:CDS |
GGGTAGTTTATTTGGTTGGA+AGG | 0.513038 | 4_1:-77439501 | Msa0574060:CDS |
TTTACGACCTACTACAGAGT+TGG | 0.513413 | 4_1:-77439656 | Msa0574060:CDS |
TAGATCAAACATACTTCTCC+AGG | 0.516315 | 4_1:+77440306 | None:intergenic |
GATTCTCCACAATATGTCCT+AGG | 0.518690 | 4_1:-77435744 | Msa0574060:CDS |
TCGGCAGTGTAGCAACCGGC+AGG | 0.519508 | 4_1:+77441258 | None:intergenic |
AGATAGACTCTGAAGAAAAG+AGG | 0.524905 | 4_1:-77434639 | Msa0574060:CDS |
GGAGAATCTACCCCGGATCT+GGG | 0.527904 | 4_1:+77435759 | None:intergenic |
AGGGTGATCGGGTGCAACAC+CGG | 0.530755 | 4_1:+77441071 | None:intergenic |
GATACTGCAGTTCTTGAAGA+GGG | 0.531819 | 4_1:-77436307 | Msa0574060:CDS |
GTTTATTTGGTTGGAAGGCG+AGG | 0.532816 | 4_1:-77439496 | Msa0574060:CDS |
GATCAAGATTTCGTCCATCT+GGG | 0.534002 | 4_1:+77440154 | None:intergenic |
TAGGTTTGTCGCAACAATCC+CGG | 0.534968 | 4_1:+77436249 | None:intergenic |
CCTTTCGGGTTGGTTCGCTC+CGG | 0.535515 | 4_1:-77441090 | Msa0574060:CDS |
GCTGAAAGTGACAGAAGTCT+TGG | 0.535620 | 4_1:-77440333 | Msa0574060:CDS |
ATGTAGATCAGATTCCTGTA+TGG | 0.538195 | 4_1:+77438914 | None:intergenic |
GCCATGTAATTGCCATTGAA+AGG | 0.538232 | 4_1:+77435651 | None:intergenic |
CTTTCTTATGATCAAAAGGC+AGG | 0.538569 | 4_1:+77437472 | None:intergenic |
CAGCCAGAGAATTTGTTTGG+TGG | 0.538936 | 4_1:-77440188 | Msa0574060:CDS |
AGCCGCACCAAAACCAGGCA+GGG | 0.541976 | 4_1:-77434725 | Msa0574060:CDS |
TGGTATAATGGGCACCCAGA+TGG | 0.543975 | 4_1:-77440168 | Msa0574060:CDS |
GAATTTGAAGATTTAAAATG+CGG | 0.548701 | 4_1:-77437903 | Msa0574060:CDS |
ATTGCCTACGCCTTTCGGGT+TGG | 0.554138 | 4_1:-77441100 | Msa0574060:CDS |
ACCAGCATGTATTGGTCTTG+AGG | 0.556950 | 4_1:+77438628 | None:intergenic |
GTTGTTGGAAGTGGACCTGC+CGG | 0.556998 | 4_1:-77441273 | Msa0574060:CDS |
ACCGGAGAAACGACGGCGCG+AGG | 0.560045 | 4_1:+77441415 | None:intergenic |
AATTTGAAGATTTAAAATGC+GGG | 0.562542 | 4_1:-77437902 | Msa0574060:intron |
AAATCAAACCACCTTTCTCA+AGG | 0.563280 | 4_1:+77434755 | None:intergenic |
CGGTTGCTACACTGCCGAGA+AGG | 0.568299 | 4_1:-77441253 | Msa0574060:intron |
TTCAGAAGAGAACACTTGGA+TGG | 0.571205 | 4_1:+77434427 | None:intergenic |
GGCTGAAGAGAGGACCAACC+GGG | 0.573110 | 4_1:-77436267 | Msa0574060:CDS |
TTCAAATTCTCCAGTACCAA+CGG | 0.574191 | 4_1:+77437917 | None:intergenic |
ACATTTCAGAAGAGAACACT+TGG | 0.574938 | 4_1:+77434423 | None:intergenic |
GCACCAAAACCAGGCAGGGA+CGG | 0.578336 | 4_1:-77434721 | Msa0574060:CDS |
TCCACTAAACTAGCAAGGAA+AGG | 0.579584 | 4_1:+77435690 | None:intergenic |
CACTTTCAGCACCATATGCA+AGG | 0.580894 | 4_1:+77440346 | None:intergenic |
CGAACCAACCCGAAAGGCGT+AGG | 0.581574 | 4_1:+77441096 | None:intergenic |
ACCTCAAGACCAATACATGC+TGG | 0.583916 | 4_1:-77438629 | Msa0574060:CDS |
AGATACTGCAGTTCTTGAAG+AGG | 0.587424 | 4_1:-77436308 | Msa0574060:CDS |
CTACTGACAGCTACCTCAGA+AGG | 0.588494 | 4_1:-77434565 | Msa0574060:CDS |
ATATTAGAAGACCTTGAGAA+AGG | 0.589957 | 4_1:-77434766 | Msa0574060:CDS |
CAATTCAGCAAGAGATACGT+TGG | 0.593711 | 4_1:+77440495 | None:intergenic |
TATGTTGTGTCAGATGTTGA+AGG | 0.594344 | 4_1:-77441157 | Msa0574060:intron |
TTAGAAGACCTTGAGAAAGG+TGG | 0.599900 | 4_1:-77434763 | Msa0574060:CDS |
CCTGGAAAACAAATTGCCGT+TGG | 0.600357 | 4_1:-77437933 | Msa0574060:CDS |
TCAAAAGGCAGGCCATCTAC+CGG | 0.600860 | 4_1:+77437483 | None:intergenic |
TCTTGTCCACTAAACTAGCA+AGG | 0.602505 | 4_1:+77435685 | None:intergenic |
ATGCTACCTCCTCTGCCTCG+AGG | 0.603211 | 4_1:+77435618 | None:intergenic |
CCAACAACACACACTCGCAA+AGG | 0.603781 | 4_1:+77441288 | None:intergenic |
GCATATTGGATGCGATATTG+GGG | 0.607019 | 4_1:-77435299 | Msa0574060:CDS |
AACACACCTAGGACATATTG+TGG | 0.607300 | 4_1:+77435738 | None:intergenic |
GTTGTTGCCAACTCTGTAGT+AGG | 0.610643 | 4_1:+77439649 | None:intergenic |
CCGGAGCGAACCAACCCGAA+AGG | 0.611629 | 4_1:+77441090 | None:intergenic |
TAGTTTAAGGAACAAGCCTA+GGG | 0.611707 | 4_1:-77434611 | Msa0574060:CDS |
ACTTCTTGACGAACACACCT+AGG | 0.611726 | 4_1:+77435727 | None:intergenic |
AGGGCTTGTATGTATGCGGT+TGG | 0.614579 | 4_1:-77436288 | Msa0574060:CDS |
AAATCCCCTCGAGGCAGAGG+AGG | 0.615958 | 4_1:-77435624 | Msa0574060:CDS |
GTTGAGCAATGATATTTGCA+TGG | 0.616551 | 4_1:-77434325 | Msa0574060:three_prime_UTR |
CAAAGCGCACGCCAGATACG+TGG | 0.621087 | 4_1:+77438531 | None:intergenic |
CATTGGTTATAAATCAGTAC+CGG | 0.623266 | 4_1:-77437502 | Msa0574060:CDS |
TTAATACAAAACAGTATACA+GGG | 0.625733 | 4_1:+77434276 | None:intergenic |
TTTGTCGCAACAATCCCGGT+TGG | 0.625777 | 4_1:+77436253 | None:intergenic |
GGGGCGTACCGGAGAAACGA+CGG | 0.626173 | 4_1:+77441408 | None:intergenic |
GCTACCTCCTCTGCCTCGAG+GGG | 0.627739 | 4_1:+77435620 | None:intergenic |
TCAACAGCCGCACCAAAACC+AGG | 0.631949 | 4_1:-77434730 | Msa0574060:CDS |
TCTACCCCGGATCTGGGACA+CGG | 0.634006 | 4_1:+77435765 | None:intergenic |
GGAATGATCAGTTCCTTCTG+AGG | 0.638115 | 4_1:+77434552 | None:intergenic |
ACATCTAACTCCAACTGATG+AGG | 0.640202 | 4_1:-77438895 | Msa0574060:intron |
CATTGGTGAGCATATCAACA+AGG | 0.644002 | 4_1:-77434455 | Msa0574060:three_prime_UTR |
AGTTCCGTGTCCCAGATCCG+GGG | 0.648960 | 4_1:-77435769 | Msa0574060:CDS |
GTAAAATAACATACTTGACA+TGG | 0.653275 | 4_1:+77435457 | None:intergenic |
GAAGAGGGCTTGTATGTATG+CGG | 0.661642 | 4_1:-77436292 | Msa0574060:CDS |
GAGAAAACAAGAGTTTGACT+AGG | 0.662678 | 4_1:+77435798 | None:intergenic |
AGACAAAACGAAGTTGACGT+TGG | 0.668905 | 4_1:+77438600 | None:intergenic |
AGAAAATGTAATGTATCACG+TGG | 0.669954 | 4_1:+77434531 | None:intergenic |
GTATGCGGTTGGCTGAAGAG+AGG | 0.679399 | 4_1:-77436277 | Msa0574060:CDS |
TGTCAGTAGTTCATTCCAGG+TGG | 0.718117 | 4_1:+77434579 | None:intergenic |
ATATTGTGGAGAATCTACCC+CGG | 0.730645 | 4_1:+77435752 | None:intergenic |
ATTGCGCAAGCTGTATCATG+TGG | 0.777509 | 4_1:-77440476 | Msa0574060:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGTAATGATAATAATAAAAT+TGG | + | chr4_1:77434538-77434557 | None:intergenic | 10.0% |
!!! | TATCATTACTATTTTATTTT+TGG | - | chr4_1:77434548-77434567 | Msa0574060:CDS | 10.0% |
!!! | GATGTTTTTATAATTAAAAA+AGG | - | chr4_1:77436802-77436821 | Msa0574060:intron | 10.0% |
!! | AAAATCTTTGTAATTTAATA+TGG | + | chr4_1:77437873-77437892 | None:intergenic | 10.0% |
!!! | AGTTATTATTTTAACAATTA+AGG | + | chr4_1:77440600-77440619 | None:intergenic | 10.0% |
!! | TTAATTGTTAAAATAATAAC+TGG | - | chr4_1:77440599-77440618 | Msa0574060:intron | 10.0% |
!! | TAAAAGTCTCTATAAAATTA+AGG | + | chr4_1:77435514-77435533 | None:intergenic | 15.0% |
!!! | ATTAATGTTTTCTAGTTAAA+TGG | - | chr4_1:77435845-77435864 | Msa0574060:CDS | 15.0% |
!!! | AAATGGTTTTATTTAATTTC+AGG | - | chr4_1:77435862-77435881 | Msa0574060:CDS | 15.0% |
!!! | AATGGTTTTATTTAATTTCA+GGG | - | chr4_1:77435863-77435882 | Msa0574060:CDS | 15.0% |
!! | TGAATATCAATAAGAATATT+TGG | + | chr4_1:77436023-77436042 | None:intergenic | 15.0% |
!!! | GAATTTAATTTATTAGAACA+TGG | - | chr4_1:77437101-77437120 | Msa0574060:intron | 15.0% |
!! | TGTTAAAAAAGAAAATTAGA+AGG | + | chr4_1:77437398-77437417 | None:intergenic | 15.0% |
!!! | ATTACTCAAATTGATTTTAT+AGG | - | chr4_1:77437609-77437628 | Msa0574060:intron | 15.0% |
!!! | ATCTACAAATTTTGATTTTA+AGG | + | chr4_1:77438889-77438908 | None:intergenic | 15.0% |
!! | CTTATTTATAAACTATTCTA+GGG | - | chr4_1:77440075-77440094 | Msa0574060:intron | 15.0% |
!!! | TGTTATTATTGTTTGGTAAT+GGG | - | chr4_1:77434909-77434928 | Msa0574060:intron | 20.0% |
!!! | ATGGTTTTATTTAATTTCAG+GGG | - | chr4_1:77435864-77435883 | Msa0574060:CDS | 20.0% |
!! | ATTTATCAGTAATATACTAC+AGG | - | chr4_1:77436050-77436069 | Msa0574060:intron | 20.0% |
!! | TTTATCAGTAATATACTACA+GGG | - | chr4_1:77436051-77436070 | Msa0574060:intron | 20.0% |
!!! | CATATTTGCTTGATTATTTT+TGG | - | chr4_1:77436203-77436222 | Msa0574060:intron | 20.0% |
!!! | TTTTTGCTAATATTACTTAC+TGG | - | chr4_1:77436416-77436435 | Msa0574060:intron | 20.0% |
!! | GAAATGTTAATAAATTGAAG+AGG | + | chr4_1:77437196-77437215 | None:intergenic | 20.0% |
!! | AGTTTGGCATAAATTTATTT+CGG | - | chr4_1:77437447-77437466 | Msa0574060:intron | 20.0% |
!!! | GAATTTGAAGATTTAAAATG+CGG | - | chr4_1:77437669-77437688 | Msa0574060:intron | 20.0% |
!!! | AATTTGAAGATTTAAAATGC+GGG | - | chr4_1:77437670-77437689 | Msa0574060:intron | 20.0% |
!! | AAAATCTCTGTGATTTAATA+TGG | + | chr4_1:77437709-77437728 | None:intergenic | 20.0% |
!! | ATCTTTGATTATAATGATAC+CGG | + | chr4_1:77437773-77437792 | None:intergenic | 20.0% |
!! | TTAATCTCTTTACTTTATAC+AGG | + | chr4_1:77437819-77437838 | None:intergenic | 20.0% |
!! | GAACATAAACTTCATATAAA+AGG | + | chr4_1:77438379-77438398 | None:intergenic | 20.0% |
!!! | TTTTTTCAAATTGAGATTAC+AGG | - | chr4_1:77438607-77438626 | Msa0574060:CDS | 20.0% |
!!! | TTTTTCAAATTGAGATTACA+GGG | - | chr4_1:77438608-77438627 | Msa0574060:CDS | 20.0% |
!! | TCAGAGTTAATATATTTGAT+GGG | - | chr4_1:77439188-77439207 | Msa0574060:intron | 20.0% |
!! | AAATACAGATCAAGTTAAAT+GGG | + | chr4_1:77439520-77439539 | None:intergenic | 20.0% |
!! | AAAATACAGATCAAGTTAAA+TGG | + | chr4_1:77439521-77439540 | None:intergenic | 20.0% |
!!! | TAACTTGATCTGTATTTTAA+AGG | - | chr4_1:77439523-77439542 | Msa0574060:intron | 20.0% |
!! | GCTTATTTATAAACTATTCT+AGG | - | chr4_1:77440074-77440093 | Msa0574060:intron | 20.0% |
!!! | TTATAAGATTAGTCTAGATA+AGG | - | chr4_1:77440166-77440185 | Msa0574060:CDS | 20.0% |
!! | AAAGCTTTCTTTCAATTATT+TGG | + | chr4_1:77441084-77441103 | None:intergenic | 20.0% |
!! | TTAATACAAAACAGTATACA+GGG | + | chr4_1:77441299-77441318 | None:intergenic | 20.0% |
!! | TTTAATACAAAACAGTATAC+AGG | + | chr4_1:77441300-77441319 | None:intergenic | 20.0% |
! | TTGCTATCTGACAAAAAAAA+GGG | + | chr4_1:77434188-77434207 | None:intergenic | 25.0% |
!! | TTTGCTATCTGACAAAAAAA+AGG | + | chr4_1:77434189-77434208 | None:intergenic | 25.0% |
! | TACAAAGAAACTTTCTTGAT+TGG | + | chr4_1:77434232-77434251 | None:intergenic | 25.0% |
! | GAGTAATGAAATTGTGTAAT+TGG | - | chr4_1:77434382-77434401 | Msa0574060:three_prime_UTR | 25.0% |
! | ACTTCTTTCTAATTTAGTCT+CGG | - | chr4_1:77434594-77434613 | Msa0574060:CDS | 25.0% |
!! | ATTTGACATATAGTTTTCCT+TGG | + | chr4_1:77434771-77434790 | None:intergenic | 25.0% |
! | TCAAATTATTAATCGAGACT+TGG | - | chr4_1:77434785-77434804 | Msa0574060:intron | 25.0% |
!! | GTGTTATTATTGTTTGGTAA+TGG | - | chr4_1:77434908-77434927 | Msa0574060:intron | 25.0% |
!!! | CTTTGATTCTGAATTTGTTA+TGG | - | chr4_1:77435124-77435143 | Msa0574060:intron | 25.0% |
!!! | TTCTGAATTTGTTATGGTAA+TGG | - | chr4_1:77435130-77435149 | Msa0574060:intron | 25.0% |
!!! | TTGTTATGGTAATGGTAAAA+TGG | - | chr4_1:77435138-77435157 | Msa0574060:intron | 25.0% |
! | CAGACTATAAGTTATAATTC+AGG | + | chr4_1:77435307-77435326 | None:intergenic | 25.0% |
!! | TTCTGAGAAGACAAAAAAAT+GGG | + | chr4_1:77435347-77435366 | None:intergenic | 25.0% |
!! | AATTTGTTTGGTGGTATAAT+GGG | - | chr4_1:77435393-77435412 | Msa0574060:intron | 25.0% |
! | AATTAACATTCACTTACTAC+AGG | + | chr4_1:77435576-77435595 | None:intergenic | 25.0% |
! | GAATGTTAATTACATACTTG+TGG | - | chr4_1:77435585-77435604 | Msa0574060:intron | 25.0% |
!!! | CCAACTTACTTTTTGTATTT+TGG | + | chr4_1:77435621-77435640 | None:intergenic | 25.0% |
! | CCAAAATACAAAAAGTAAGT+TGG | - | chr4_1:77435618-77435637 | Msa0574060:CDS | 25.0% |
! | ATATGTGTAAGTCATCTAAT+AGG | + | chr4_1:77435809-77435828 | None:intergenic | 25.0% |
! | TGTTGTTCTATGAAATTGTT+TGG | - | chr4_1:77436226-77436245 | Msa0574060:intron | 25.0% |
!! | ATGATTTTCTTTGTTAGACA+TGG | - | chr4_1:77436284-77436303 | Msa0574060:CDS | 25.0% |
! | AAACTGTTTGAACTGAATAA+TGG | - | chr4_1:77436451-77436470 | Msa0574060:intron | 25.0% |
! | AACTGTTTGAACTGAATAAT+GGG | - | chr4_1:77436452-77436471 | Msa0574060:intron | 25.0% |
! | AGATGCAAAATAGAAAAGTA+GGG | + | chr4_1:77436753-77436772 | None:intergenic | 25.0% |
! | AAGATGCAAAATAGAAAAGT+AGG | + | chr4_1:77436754-77436773 | None:intergenic | 25.0% |
!! | TATGTATTGATGTTGTCATT+TGG | - | chr4_1:77436855-77436874 | Msa0574060:intron | 25.0% |
! | CAAAAATTCTTCTGTGTATT+CGG | + | chr4_1:77436903-77436922 | None:intergenic | 25.0% |
! | TTTGATTCTTGAAAACTATC+TGG | + | chr4_1:77437009-77437028 | None:intergenic | 25.0% |
!! | TGAACATGCTTTAGTATTTT+TGG | - | chr4_1:77437278-77437297 | Msa0574060:intron | 25.0% |
!!! | GATAGTTTTGAAAATCACAA+GGG | + | chr4_1:77437359-77437378 | None:intergenic | 25.0% |
!!! | TGATAGTTTTGAAAATCACA+AGG | + | chr4_1:77437360-77437379 | None:intergenic | 25.0% |
!! | GTGATTTTCAAAACTATCAA+TGG | - | chr4_1:77437361-77437380 | Msa0574060:intron | 25.0% |
! | TACGTTCAATAGTTAAAGTT+TGG | - | chr4_1:77437431-77437450 | Msa0574060:intron | 25.0% |
! | CATAAATTTATTTCGGTAAC+TGG | - | chr4_1:77437454-77437473 | Msa0574060:intron | 25.0% |
!!! | CAAATTGATTTTATAGGTGT+TGG | - | chr4_1:77437615-77437634 | Msa0574060:intron | 25.0% |
! | GTGATTTAATATGGTTTCTT+GGG | + | chr4_1:77437700-77437719 | None:intergenic | 25.0% |
! | TGTGATTTAATATGGTTTCT+TGG | + | chr4_1:77437701-77437720 | None:intergenic | 25.0% |
! | TTGTAAAAAATCTTACCCTT+TGG | - | chr4_1:77437731-77437750 | Msa0574060:intron | 25.0% |
!! | ACATTTTGTGATAATATCAC+AGG | + | chr4_1:77437989-77438008 | None:intergenic | 25.0% |
! | GCACGAAAAGTAATTAAATT+AGG | + | chr4_1:77438146-77438165 | None:intergenic | 25.0% |
!! | TTTTCAAATTGAGATTACAG+GGG | - | chr4_1:77438609-77438628 | Msa0574060:CDS | 25.0% |
!! | AAAAAGAGTCATTTGGTAAT+TGG | + | chr4_1:77438742-77438761 | None:intergenic | 25.0% |
! | ATGACTAAAAAAGAGTCATT+TGG | + | chr4_1:77438749-77438768 | None:intergenic | 25.0% |
! | AATAAGCTATAAGCTCAAAA+AGG | - | chr4_1:77438776-77438795 | Msa0574060:intron | 25.0% |
! | TTAAGTGAAAACAAAACAGT+AGG | - | chr4_1:77438846-77438865 | Msa0574060:intron | 25.0% |
!!! | GATTTTAAGGTTAGACATTT+GGG | + | chr4_1:77438876-77438895 | None:intergenic | 25.0% |
!!! | TGATTTTAAGGTTAGACATT+TGG | + | chr4_1:77438877-77438896 | None:intergenic | 25.0% |
! | AAGCATGAGTTAATAACAAA+AGG | + | chr4_1:77439088-77439107 | None:intergenic | 25.0% |
! | CTCAGAGTTAATATATTTGA+TGG | - | chr4_1:77439187-77439206 | Msa0574060:intron | 25.0% |
! | CTGACATGATATTATATTAG+TGG | + | chr4_1:77439665-77439684 | None:intergenic | 25.0% |
! | ATTTGAATGAACTCAGAATT+GGG | + | chr4_1:77439729-77439748 | None:intergenic | 25.0% |
! | AATTTGAATGAACTCAGAAT+TGG | + | chr4_1:77439730-77439749 | None:intergenic | 25.0% |
!! | TTAGTGGACAAGATTATAAT+AGG | - | chr4_1:77439897-77439916 | Msa0574060:intron | 25.0% |
! | ATTATAATAGGTCCTTTCAA+TGG | - | chr4_1:77439909-77439928 | Msa0574060:intron | 25.0% |
!!! | ATGTAGATTTTAGGTCAATA+TGG | - | chr4_1:77439975-77439994 | Msa0574060:intron | 25.0% |
! | TATTTAATGTTCTCATCTTG+CGG | + | chr4_1:77440019-77440038 | None:intergenic | 25.0% |
! | GTAAAATAACATACTTGACA+TGG | + | chr4_1:77440118-77440137 | None:intergenic | 25.0% |
! | GTGTGATAGTAATACAAATA+TGG | + | chr4_1:77440435-77440454 | None:intergenic | 25.0% |
! | TTAGATGACATAGTTGAAAT+GGG | + | chr4_1:77440465-77440484 | None:intergenic | 25.0% |
! | GATAGTTTCATTCAATGATT+GGG | - | chr4_1:77440907-77440926 | Msa0574060:intron | 25.0% |
!!! | TCAATTATTTGGTGTTTTCT+TGG | + | chr4_1:77441073-77441092 | None:intergenic | 25.0% |
! | TTAATGTGTACAATGAACTA+TGG | + | chr4_1:77441392-77441411 | None:intergenic | 25.0% |
TGCTATCTGACAAAAAAAAG+GGG | + | chr4_1:77434187-77434206 | None:intergenic | 30.0% | |
AAAATTGGACCTTAGTTTCA+GGG | + | chr4_1:77434523-77434542 | None:intergenic | 30.0% | |
TAAAATTGGACCTTAGTTTC+AGG | + | chr4_1:77434524-77434543 | None:intergenic | 30.0% | |
TACTAAATCCAGAGATAGAT+TGG | + | chr4_1:77434817-77434836 | None:intergenic | 30.0% | |
TATCTCTGGATTTAGTACTT+GGG | - | chr4_1:77434820-77434839 | Msa0574060:intron | 30.0% | |
! | GGTTGTGTGTTATTATTGTT+TGG | - | chr4_1:77434902-77434921 | Msa0574060:intron | 30.0% |
!! | ATTATTGTTTGGTAATGGGA+TGG | - | chr4_1:77434913-77434932 | Msa0574060:intron | 30.0% |
!! | TTATTGTTTGGTAATGGGAT+GGG | - | chr4_1:77434914-77434933 | Msa0574060:intron | 30.0% |
!! | GTTCTGAGAAGACAAAAAAA+TGG | + | chr4_1:77435348-77435367 | None:intergenic | 30.0% |
TTGTCTTCTCAGAACTTAAA+AGG | - | chr4_1:77435353-77435372 | Msa0574060:intron | 30.0% | |
! | GAATTTGTTTGGTGGTATAA+TGG | - | chr4_1:77435392-77435411 | Msa0574060:intron | 30.0% |
ATTGATACAGCTGTAATTCT+TGG | - | chr4_1:77435455-77435474 | Msa0574060:intron | 30.0% | |
TCAAATCCTAACCTATTAGA+TGG | - | chr4_1:77435738-77435757 | Msa0574060:CDS | 30.0% | |
ATATGTGTAAGCCATCTAAT+AGG | + | chr4_1:77435752-77435771 | None:intergenic | 30.0% | |
ATAGGTTAGGATTTGAATTG+TGG | + | chr4_1:77435791-77435810 | None:intergenic | 30.0% | |
TGTAAGTCATCTAATAGGTT+AGG | + | chr4_1:77435804-77435823 | None:intergenic | 30.0% | |
ATACTACAGGGTAGTTTATT+TGG | - | chr4_1:77436063-77436082 | Msa0574060:intron | 30.0% | |
TATGCATCAGAAAACTGAAT+GGG | + | chr4_1:77436187-77436206 | None:intergenic | 30.0% | |
ATATGCATCAGAAAACTGAA+TGG | + | chr4_1:77436188-77436207 | None:intergenic | 30.0% | |
TTCTATGAAATTGTTTGGCA+AGG | - | chr4_1:77436231-77436250 | Msa0574060:CDS | 30.0% | |
TCTATGAAATTGTTTGGCAA+GGG | - | chr4_1:77436232-77436251 | Msa0574060:CDS | 30.0% | |
ATGGATGTTTCCTTTGTAAA+CGG | - | chr4_1:77436303-77436322 | Msa0574060:CDS | 30.0% | |
ACTGAAATCATGGAAATCAA+TGG | + | chr4_1:77436382-77436401 | None:intergenic | 30.0% | |
ACTGTTTGAACTGAATAATG+GGG | - | chr4_1:77436453-77436472 | Msa0574060:intron | 30.0% | |
TACCACCTGATATATTAGAT+CGG | - | chr4_1:77436497-77436516 | Msa0574060:intron | 30.0% | |
AGAAACCGATCTAATATATC+AGG | + | chr4_1:77436505-77436524 | None:intergenic | 30.0% | |
ATTTACTTGCCATATACTGT+AGG | - | chr4_1:77436562-77436581 | Msa0574060:intron | 30.0% | |
AGGCTTCATCATTTATTTAC+AGG | - | chr4_1:77436615-77436634 | Msa0574060:intron | 30.0% | |
TCAATTTATACCTCATCAGT+TGG | + | chr4_1:77436690-77436709 | None:intergenic | 30.0% | |
CACAAAAACATCTAGATTCT+GGG | + | chr4_1:77436780-77436799 | None:intergenic | 30.0% | |
ACACAAAAACATCTAGATTC+TGG | + | chr4_1:77436781-77436800 | None:intergenic | 30.0% | |
!!! | AATTTTTGAGTTGCTATCCA+AGG | - | chr4_1:77436915-77436934 | Msa0574060:intron | 30.0% |
TTTGAGAAGACAGTTCTTAA+AGG | - | chr4_1:77437060-77437079 | Msa0574060:intron | 30.0% | |
!!! | ACATGCTTTAGTATTTTTGG+AGG | - | chr4_1:77437281-77437300 | Msa0574060:intron | 30.0% |
TTCACTCACACTCATAAAAT+AGG | + | chr4_1:77437326-77437345 | None:intergenic | 30.0% | |
TATAATGATACCGGAAGAAA+AGG | + | chr4_1:77437764-77437783 | None:intergenic | 30.0% | |
CTCTTTACTTTATACAGGAT+AGG | + | chr4_1:77437814-77437833 | None:intergenic | 30.0% | |
! | AGAAAAGATTTTGTGGCAAA+TGG | + | chr4_1:77437917-77437936 | None:intergenic | 30.0% |
! | TACCAGTAGAAAAGATTTTG+TGG | + | chr4_1:77437924-77437943 | None:intergenic | 30.0% |
ACAGGAATAAATATCTGTTG+AGG | + | chr4_1:77437971-77437990 | None:intergenic | 30.0% | |
! | CATTGGTTATAAATCAGTAC+CGG | - | chr4_1:77438070-77438089 | Msa0574060:intron | 30.0% |
TCACCTTTCTTATGATCAAA+AGG | + | chr4_1:77438107-77438126 | None:intergenic | 30.0% | |
!!! | AAAACCATGTTTTGGGAAAA+TGG | - | chr4_1:77438203-77438222 | Msa0574060:intron | 30.0% |
AAATTAGGGAAAATGGTATC+CGG | - | chr4_1:77438252-77438271 | Msa0574060:intron | 30.0% | |
ATCCTAATTTACAGTTAACC+CGG | + | chr4_1:77438322-77438341 | None:intergenic | 30.0% | |
!!! | GTATTCAGCATTTTTTTACC+AGG | - | chr4_1:77438409-77438428 | Msa0574060:intron | 30.0% |
! | GCTGATAATCTAGTTTATAG+TGG | - | chr4_1:77438495-77438514 | Msa0574060:intron | 30.0% |
CTGATTGAATTTGTAGTGTT+TGG | - | chr4_1:77438527-77438546 | Msa0574060:CDS | 30.0% | |
!!! | GTGTTTTTTTCACTGTATGT+AGG | - | chr4_1:77438930-77438949 | Msa0574060:CDS | 30.0% |
ATTTACAAGTCCTATCTACA+TGG | + | chr4_1:77438957-77438976 | None:intergenic | 30.0% | |
ATGTAGATAGGACTTGTAAA+TGG | - | chr4_1:77438956-77438975 | Msa0574060:intron | 30.0% | |
! | ATAGGACTTGTAAATGGATT+TGG | - | chr4_1:77438962-77438981 | Msa0574060:intron | 30.0% |
CTCTGTTCATTGTAGATTAA+CGG | - | chr4_1:77439025-77439044 | Msa0574060:intron | 30.0% | |
TCTGTTCATTGTAGATTAAC+GGG | - | chr4_1:77439026-77439045 | Msa0574060:intron | 30.0% | |
GGTATAGTTCCAAATGATAA+AGG | - | chr4_1:77439220-77439239 | Msa0574060:intron | 30.0% | |
GGGATAATACGAATAGAAAA+GGG | + | chr4_1:77439379-77439398 | None:intergenic | 30.0% | |
AGGGATAATACGAATAGAAA+AGG | + | chr4_1:77439380-77439399 | None:intergenic | 30.0% | |
CTGTCAGTTTAACTGTTATA+GGG | + | chr4_1:77439399-77439418 | None:intergenic | 30.0% | |
TCTGTCAGTTTAACTGTTAT+AGG | + | chr4_1:77439400-77439419 | None:intergenic | 30.0% | |
AAGGTTCGTAATATACACAT+AGG | + | chr4_1:77439612-77439631 | None:intergenic | 30.0% | |
TTAACTAGCATTAATGCTGA+AGG | + | chr4_1:77439631-77439650 | None:intergenic | 30.0% | |
AATTGGGAATCGAGAAATAA+GGG | + | chr4_1:77439713-77439732 | None:intergenic | 30.0% | |
!! | ATTTTAGGTCAATATGGAAG+AGG | - | chr4_1:77439981-77440000 | Msa0574060:intron | 30.0% |
!! | TTTTAGGTCAATATGGAAGA+GGG | - | chr4_1:77439982-77440001 | Msa0574060:intron | 30.0% |
! | TAGAAGTATAGAACTACAAG+TGG | + | chr4_1:77440241-77440260 | None:intergenic | 30.0% |
CATAGTTGAAATGGGAAATT+TGG | + | chr4_1:77440457-77440476 | None:intergenic | 30.0% | |
CTTAGATGACATAGTTGAAA+TGG | + | chr4_1:77440466-77440485 | None:intergenic | 30.0% | |
CATCATACATAGACTATGAT+TGG | - | chr4_1:77440542-77440561 | Msa0574060:CDS | 30.0% | |
!!! | CAGGTTTTTTATATGCATGA+TGG | + | chr4_1:77440653-77440672 | None:intergenic | 30.0% |
ATATTAGAAGACCTTGAGAA+AGG | - | chr4_1:77440806-77440825 | Msa0574060:intron | 30.0% | |
TTCTATCATGCAAAAGATTG+AGG | + | chr4_1:77440880-77440899 | None:intergenic | 30.0% | |
! | TTTTGCATGATAGAAACGTT+AGG | - | chr4_1:77440885-77440904 | Msa0574060:intron | 30.0% |
GGATAGTTTCATTCAATGAT+TGG | - | chr4_1:77440906-77440925 | Msa0574060:intron | 30.0% | |
AGAAAATGTAATGTATCACG+TGG | + | chr4_1:77441044-77441063 | None:intergenic | 30.0% | |
GCTATCTGACAAAAAAAAGG+GGG | + | chr4_1:77434186-77434205 | None:intergenic | 35.0% | |
TATGTTGTGTCAGATGTTGA+AGG | - | chr4_1:77434415-77434434 | Msa0574060:three_prime_UTR | 35.0% | |
CTTTCTAATTTAGTCTCGGT+CGG | - | chr4_1:77434598-77434617 | Msa0574060:CDS | 35.0% | |
GTGGTCATAATAAGAGATAG+AGG | - | chr4_1:77434741-77434760 | Msa0574060:CDS | 35.0% | |
CTATCTCTGGATTTAGTACT+TGG | - | chr4_1:77434819-77434838 | Msa0574060:intron | 35.0% | |
!! | TATTGTTTGGTAATGGGATG+GGG | - | chr4_1:77434915-77434934 | Msa0574060:intron | 35.0% |
! | GGGTTATCCATGTTTTTCTT+TGG | - | chr4_1:77434935-77434954 | Msa0574060:intron | 35.0% |
ACTCTCACCAAAGAAAAACA+TGG | + | chr4_1:77434945-77434964 | None:intergenic | 35.0% | |
! | ACAATCTGTTGCAAGTTTTC+TGG | + | chr4_1:77434989-77435008 | None:intergenic | 35.0% |
! | TTGTCGTCAACCAATTTTCA+AGG | - | chr4_1:77435005-77435024 | Msa0574060:intron | 35.0% |
! | TGTCGTCAACCAATTTTCAA+GGG | - | chr4_1:77435006-77435025 | Msa0574060:intron | 35.0% |
!!! | CATGAACGATGCTCATTTTT+TGG | - | chr4_1:77435037-77435056 | Msa0574060:intron | 35.0% |
!!! | TTTTTTGGAAATGTGACGCT+TGG | - | chr4_1:77435052-77435071 | Msa0574060:intron | 35.0% |
TGCACGAATTATCGAAAAGA+TGG | + | chr4_1:77435188-77435207 | None:intergenic | 35.0% | |
TAGATCAAACATACTTCTCC+AGG | + | chr4_1:77435269-77435288 | None:intergenic | 35.0% | |
! | TATCAGCCAGAGAATTTGTT+TGG | - | chr4_1:77435381-77435400 | Msa0574060:intron | 35.0% |
ATACCACCAAACAAATTCTC+TGG | + | chr4_1:77435390-77435409 | None:intergenic | 35.0% | |
GCTTATAACATAGCCACAAT+GGG | + | chr4_1:77435687-77435706 | None:intergenic | 35.0% | |
TGCTTATAACATAGCCACAA+TGG | + | chr4_1:77435688-77435707 | None:intergenic | 35.0% | |
!! | ATAGGTTAGGATTTGAGTTG+TGG | + | chr4_1:77435734-77435753 | None:intergenic | 35.0% |
TGTAAGCCATCTAATAGGTT+AGG | + | chr4_1:77435747-77435766 | None:intergenic | 35.0% | |
GGCTTACACATATTTGTAAG+AGG | - | chr4_1:77435759-77435778 | Msa0574060:CDS | 35.0% | |
TAAAGTAGACAAAGCATGAC+TGG | + | chr4_1:77435957-77435976 | None:intergenic | 35.0% | |
TACAGGGTAGTTTATTTGGT+TGG | - | chr4_1:77436067-77436086 | Msa0574060:intron | 35.0% | |
GGGTAAAATAAACTCGCTAT+AGG | + | chr4_1:77436167-77436186 | None:intergenic | 35.0% | |
TGGATGTTTCCTTTGTAAAC+GGG | - | chr4_1:77436304-77436323 | Msa0574060:CDS | 35.0% | |
! | GCTAGTTTACACTATCAAGT+TGG | - | chr4_1:77436345-77436364 | Msa0574060:CDS | 35.0% |
CCAATAAGAGACTGAAATCA+TGG | + | chr4_1:77436392-77436411 | None:intergenic | 35.0% | |
CCATGATTTCAGTCTCTTAT+TGG | - | chr4_1:77436389-77436408 | Msa0574060:intron | 35.0% | |
! | TTACTTACTGGTGCTAGTAA+AGG | - | chr4_1:77436428-77436447 | Msa0574060:intron | 35.0% |
!!! | GGGGTCTTGATCATTTTTTT+TGG | - | chr4_1:77436472-77436491 | Msa0574060:intron | 35.0% |
AACCGATCTAATATATCAGG+TGG | + | chr4_1:77436502-77436521 | None:intergenic | 35.0% | |
TTTCTCATCCTAAGCTGTAT+TGG | - | chr4_1:77436520-77436539 | Msa0574060:intron | 35.0% | |
AACTATCACCAATACAGCTT+AGG | + | chr4_1:77436531-77436550 | None:intergenic | 35.0% | |
GATGTAAGACCTACAGTATA+TGG | + | chr4_1:77436574-77436593 | None:intergenic | 35.0% | |
! | TTTTCTCACAACACTAACTG+AGG | - | chr4_1:77436595-77436614 | Msa0574060:intron | 35.0% |
GAATCTTGATGTTTCCATAC+AGG | - | chr4_1:77436644-77436663 | Msa0574060:intron | 35.0% | |
ATGTAGATCAGATTCCTGTA+TGG | + | chr4_1:77436661-77436680 | None:intergenic | 35.0% | |
! | TTGATGTTGTCATTTGGCAA+AGG | - | chr4_1:77436861-77436880 | Msa0574060:intron | 35.0% |
! | CTTGAAAACTATCTGGCTTA+CGG | + | chr4_1:77437002-77437021 | None:intergenic | 35.0% |
CAAGAATCAAAAGACAGTAC+TGG | - | chr4_1:77437018-77437037 | Msa0574060:intron | 35.0% | |
TGTATGTACGTCGTACATTT+GGG | + | chr4_1:77437483-77437502 | None:intergenic | 35.0% | |
!! | AATGTGCTAGTCTTTAGCAA+AGG | + | chr4_1:77437552-77437571 | None:intergenic | 35.0% |
GACTAGCACATTTATGCATA+TGG | - | chr4_1:77437560-77437579 | Msa0574060:intron | 35.0% | |
TTCAAATTCTCCAGTACCAA+CGG | + | chr4_1:77437658-77437677 | None:intergenic | 35.0% | |
!! | AGAAAAGGTTTTGTGCCAAA+GGG | + | chr4_1:77437749-77437768 | None:intergenic | 35.0% |
!! | AAGAAAAGGTTTTGTGCCAA+AGG | + | chr4_1:77437750-77437769 | None:intergenic | 35.0% |
! | TGCCACAAAATCTTTTCTAC+TGG | - | chr4_1:77437919-77437938 | Msa0574060:CDS | 35.0% |
!! | TATAAATCAGTACCGGTAGA+TGG | - | chr4_1:77438077-77438096 | Msa0574060:intron | 35.0% |
CTTTCTTATGATCAAAAGGC+AGG | + | chr4_1:77438103-77438122 | None:intergenic | 35.0% | |
! | CTGCCTTTTGATCATAAGAA+AGG | - | chr4_1:77438101-77438120 | Msa0574060:intron | 35.0% |
! | ACTGTGACAAAACCATGTTT+TGG | - | chr4_1:77438195-77438214 | Msa0574060:intron | 35.0% |
! | CTGTGACAAAACCATGTTTT+GGG | - | chr4_1:77438196-77438215 | Msa0574060:intron | 35.0% |
! | GATACCATTTTCCCAAAACA+TGG | + | chr4_1:77438210-77438229 | None:intergenic | 35.0% |
!!! | TGTTTTGGGAAAATGGTATC+CGG | - | chr4_1:77438210-77438229 | Msa0574060:intron | 35.0% |
ATTACAGGCTTGGGAAATTA+GGG | - | chr4_1:77438238-77438257 | Msa0574060:intron | 35.0% | |
!! | ATGATGTTTTGTTGATCCTC+CGG | - | chr4_1:77438300-77438319 | Msa0574060:intron | 35.0% |
!!! | AGCATTTTTTTACCAGGATG+TGG | - | chr4_1:77438415-77438434 | Msa0574060:intron | 35.0% |
TAGTCAATAAAACCACATCC+TGG | + | chr4_1:77438430-77438449 | None:intergenic | 35.0% | |
ATAAGCTCGTGAGAAAATGA+TGG | - | chr4_1:77438713-77438732 | Msa0574060:intron | 35.0% | |
AATCTCTGATCAACTGCTAA+GGG | + | chr4_1:77438817-77438836 | None:intergenic | 35.0% | |
AAATCTCTGATCAACTGCTA+AGG | + | chr4_1:77438818-77438837 | None:intergenic | 35.0% | |
GTGAAAACAAAACAGTAGGA+TGG | - | chr4_1:77438850-77438869 | Msa0574060:intron | 35.0% | |
CGTTAATCTACAATGAACAG+AGG | + | chr4_1:77439027-77439046 | None:intergenic | 35.0% | |
TCATTGTAGATTAACGGGAT+TGG | - | chr4_1:77439031-77439050 | Msa0574060:intron | 35.0% | |
! | GCATCATGCTTGTTAATTCT+AGG | + | chr4_1:77439134-77439153 | None:intergenic | 35.0% |
! | ATATTTGATGGGTACCTTTC+AGG | - | chr4_1:77439199-77439218 | Msa0574060:intron | 35.0% |
! | CATTTGGAACTATACCTGAA+AGG | + | chr4_1:77439216-77439235 | None:intergenic | 35.0% |
AACACTCGACCTTTATCATT+TGG | + | chr4_1:77439232-77439251 | None:intergenic | 35.0% | |
CAGTTTCTTCAGCACAATAT+AGG | + | chr4_1:77439345-77439364 | None:intergenic | 35.0% | |
GAACAATGAAGAAGAACTTC+AGG | + | chr4_1:77439590-77439609 | None:intergenic | 35.0% | |
TCGAGAAATAAGGGTTTAAG+AGG | + | chr4_1:77439704-77439723 | None:intergenic | 35.0% | |
GAATTGGGAATCGAGAAATA+AGG | + | chr4_1:77439714-77439733 | None:intergenic | 35.0% | |
GAGAAAACAAGAGTTTGACT+AGG | + | chr4_1:77439777-77439796 | None:intergenic | 35.0% | |
TCCTTTCAATGGCAATTACA+TGG | - | chr4_1:77439920-77439939 | Msa0574060:intron | 35.0% | |
TATTTCAGCAGCATGCATAT+TGG | - | chr4_1:77440259-77440278 | Msa0574060:intron | 35.0% | |
ATGCATATTGGATGCGATAT+TGG | - | chr4_1:77440271-77440290 | Msa0574060:intron | 35.0% | |
TGCATATTGGATGCGATATT+GGG | - | chr4_1:77440272-77440291 | Msa0574060:intron | 35.0% | |
TATGGTCTCTATGAAAACTG+TGG | + | chr4_1:77440417-77440436 | None:intergenic | 35.0% | |
! | TGCGTTTAGAAGTGTGAAAT+AGG | + | chr4_1:77440512-77440531 | None:intergenic | 35.0% |
CACTTCTAAACGCATTATTC+AGG | - | chr4_1:77440518-77440537 | Msa0574060:CDS | 35.0% | |
CTAATACTAATGCTGCATAC+AGG | + | chr4_1:77440672-77440691 | None:intergenic | 35.0% | |
! | TTCGCTCAACTTTTAACAAC+AGG | - | chr4_1:77440701-77440720 | Msa0574060:intron | 35.0% |
! | TCGCTCAACTTTTAACAACA+GGG | - | chr4_1:77440702-77440721 | Msa0574060:intron | 35.0% |
! | AACTTTTAACAACAGGGAAG+AGG | - | chr4_1:77440708-77440727 | Msa0574060:intron | 35.0% |
! | ACTTTTAACAACAGGGAAGA+GGG | - | chr4_1:77440709-77440728 | Msa0574060:intron | 35.0% |
! | TTTTCTGCTGACAATTGACA+TGG | - | chr4_1:77440771-77440790 | Msa0574060:intron | 35.0% |
AAATCAAACCACCTTTCTCA+AGG | + | chr4_1:77440820-77440839 | None:intergenic | 35.0% | |
! | AGATAGACTCTGAAGAAAAG+AGG | - | chr4_1:77440933-77440952 | Msa0574060:intron | 35.0% |
! | AAAAGAGGCTTGGTAGTTTA+AGG | - | chr4_1:77440948-77440967 | Msa0574060:intron | 35.0% |
TAGTTTAAGGAACAAGCCTA+GGG | - | chr4_1:77440961-77440980 | Msa0574060:intron | 35.0% | |
CTTTCACATTACACACTCAT+TGG | - | chr4_1:77441100-77441119 | Msa0574060:CDS | 35.0% | |
ACATTTCAGAAGAGAACACT+TGG | + | chr4_1:77441152-77441171 | None:intergenic | 35.0% | |
!! | GCAGAAAGAAGCATGATTTT+TGG | - | chr4_1:77441195-77441214 | Msa0574060:intron | 35.0% |
GTTGAGCAATGATATTTGCA+TGG | - | chr4_1:77441247-77441266 | Msa0574060:intron | 35.0% | |
TAGTCTCGGTCGGTATAAAT+TGG | - | chr4_1:77434608-77434627 | Msa0574060:CDS | 40.0% | |
TGTAGAAGCAATCACCAGTA+AGG | - | chr4_1:77434696-77434715 | Msa0574060:CDS | 40.0% | |
GAATAAACAACCCTCCTTAC+TGG | + | chr4_1:77434713-77434732 | None:intergenic | 40.0% | |
AAGGAGGGTTGTTTATTCAG+AGG | - | chr4_1:77434715-77434734 | Msa0574060:CDS | 40.0% | |
AGGGTTGTTTATTCAGAGGA+TGG | - | chr4_1:77434719-77434738 | Msa0574060:CDS | 40.0% | |
GTTGTTTATTCAGAGGATGG+TGG | - | chr4_1:77434722-77434741 | Msa0574060:CDS | 40.0% | |
TAAGAGATAGAGGAACACCA+AGG | - | chr4_1:77434751-77434770 | Msa0574060:CDS | 40.0% | |
GGTGTTAACCAATCTATCTC+TGG | - | chr4_1:77434806-77434825 | Msa0574060:intron | 40.0% | |
TTACGTGGCGTCAAGTAAAT+GGG | + | chr4_1:77434867-77434886 | None:intergenic | 40.0% | |
ATTACGTGGCGTCAAGTAAA+TGG | + | chr4_1:77434868-77434887 | None:intergenic | 40.0% | |
ATTTACTTGACGCCACGTAA+TGG | - | chr4_1:77434867-77434886 | Msa0574060:intron | 40.0% | |
TTTACTTGACGCCACGTAAT+GGG | - | chr4_1:77434868-77434887 | Msa0574060:intron | 40.0% | |
! | AAAGCCTTTTTCCCATTACG+TGG | + | chr4_1:77434882-77434901 | None:intergenic | 40.0% |
! | ACGTAATGGGAAAAAGGCTT+TGG | - | chr4_1:77434881-77434900 | Msa0574060:intron | 40.0% |
CAATTCAGCAAGAGATACGT+TGG | + | chr4_1:77435080-77435099 | None:intergenic | 40.0% | |
GATCAAGATTTCGTCCATCT+GGG | + | chr4_1:77435421-77435440 | None:intergenic | 40.0% | |
TACAGCTGTAATTCTTGGTC+AGG | - | chr4_1:77435460-77435479 | Msa0574060:intron | 40.0% | |
! | AGGCACTGTAAGAATACATG+AGG | + | chr4_1:77435494-77435513 | None:intergenic | 40.0% |
TATTAAACTCCCGCCATGAT+GGG | - | chr4_1:77435644-77435663 | Msa0574060:CDS | 40.0% | |
TAATATGTACCCCATCATGG+CGG | + | chr4_1:77435657-77435676 | None:intergenic | 40.0% | |
! | CCATGATGGGGTACATATTA+GGG | - | chr4_1:77435657-77435676 | Msa0574060:CDS | 40.0% |
TAAGCAGTCTTACCTGTAAG+AGG | - | chr4_1:77435702-77435721 | Msa0574060:CDS | 40.0% | |
TTGTGGAATCAACCTCTTAC+AGG | + | chr4_1:77435717-77435736 | None:intergenic | 40.0% | |
TTTACGACCTACTACAGAGT+TGG | - | chr4_1:77435916-77435935 | Msa0574060:intron | 40.0% | |
! | CTTTAGAAGAGAGCTCTATC+AGG | - | chr4_1:77435972-77435991 | Msa0574060:intron | 40.0% |
GGGTAGTTTATTTGGTTGGA+AGG | - | chr4_1:77436071-77436090 | Msa0574060:intron | 40.0% | |
AAAGAGCTACGTGAAGTTCT+AGG | - | chr4_1:77436124-77436143 | Msa0574060:intron | 40.0% | |
!! | TGAGAAGTACCCGTTTACAA+AGG | + | chr4_1:77436316-77436335 | None:intergenic | 40.0% |
ACATCTAACTCCAACTGATG+AGG | - | chr4_1:77436677-77436696 | Msa0574060:intron | 40.0% | |
AGAAAAGTAGGGATGACGAT+TGG | + | chr4_1:77436742-77436761 | None:intergenic | 40.0% | |
TGGTTCAAACCAGCATGTAT+TGG | + | chr4_1:77436955-77436974 | None:intergenic | 40.0% | |
AGACAAAACGAAGTTGACGT+TGG | + | chr4_1:77436975-77436994 | None:intergenic | 40.0% | |
GAAGAGGTCGTATCATTGTT+CGG | + | chr4_1:77437180-77437199 | None:intergenic | 40.0% | |
GAAGACGAATAAAAGTGGGA+AGG | + | chr4_1:77437220-77437239 | None:intergenic | 40.0% | |
GCGAGAAGACGAATAAAAGT+GGG | + | chr4_1:77437224-77437243 | None:intergenic | 40.0% | |
AGCGAGAAGACGAATAAAAG+TGG | + | chr4_1:77437225-77437244 | None:intergenic | 40.0% | |
CTGTATGTACGTCGTACATT+TGG | + | chr4_1:77437484-77437503 | None:intergenic | 40.0% | |
!! | CAACGGCAATTTGTTTTCCA+GGG | + | chr4_1:77437641-77437660 | None:intergenic | 40.0% |
AAACAAATTGCCGTTGGTAC+TGG | - | chr4_1:77437645-77437664 | Msa0574060:intron | 40.0% | |
! | TGGCACAAAACCTTTTCTTC+CGG | - | chr4_1:77437751-77437770 | Msa0574060:intron | 40.0% |
! | AGGATGGTTCTTAAGAGCAT+TGG | - | chr4_1:77438053-77438072 | Msa0574060:intron | 40.0% |
TGGTATCCGGTAAAGATTAC+AGG | - | chr4_1:77438223-77438242 | Msa0574060:intron | 40.0% | |
GATTACAGGCTTGGGAAATT+AGG | - | chr4_1:77438237-77438256 | Msa0574060:intron | 40.0% | |
GCTTGGGAAATTAGGGAAAA+TGG | - | chr4_1:77438245-77438264 | Msa0574060:intron | 40.0% | |
TGGTATCCGGTAAAGATTAC+AGG | - | chr4_1:77438223-77438242 | Msa0574060:intron | 40.0% | |
!! | TGATGTTTTGTTGATCCTCC+GGG | - | chr4_1:77438301-77438320 | Msa0574060:intron | 40.0% |
CTAATTTACAGTTAACCCGG+AGG | + | chr4_1:77438319-77438338 | None:intergenic | 40.0% | |
CTCCGGGTTAACTGTAAATT+AGG | - | chr4_1:77438317-77438336 | Msa0574060:intron | 40.0% | |
ACTATGACCATATCCGACTT+AGG | - | chr4_1:77438446-77438465 | Msa0574060:intron | 40.0% | |
TTACCAAACAGAGCCTAAGT+CGG | + | chr4_1:77438462-77438481 | None:intergenic | 40.0% | |
GTATGTAGGTCCATGTAGAT+AGG | - | chr4_1:77438944-77438963 | Msa0574060:intron | 40.0% | |
AAAAGGAGAGACTACAAAGC+AGG | + | chr4_1:77439071-77439090 | None:intergenic | 40.0% | |
AGATACTGCAGTTCTTGAAG+AGG | - | chr4_1:77439264-77439283 | Msa0574060:intron | 40.0% | |
GATACTGCAGTTCTTGAAGA+GGG | - | chr4_1:77439265-77439284 | Msa0574060:intron | 40.0% | |
ATATTGTGGAGAATCTACCC+CGG | + | chr4_1:77439823-77439842 | None:intergenic | 40.0% | |
GATTCTCCACAATATGTCCT+AGG | - | chr4_1:77439828-77439847 | Msa0574060:intron | 40.0% | |
AACACACCTAGGACATATTG+TGG | + | chr4_1:77439837-77439856 | None:intergenic | 40.0% | |
! | TCCTTTCCTTGCTAGTTTAG+TGG | - | chr4_1:77439881-77439900 | Msa0574060:intron | 40.0% |
TCCACTAAACTAGCAAGGAA+AGG | + | chr4_1:77439885-77439904 | None:intergenic | 40.0% | |
TCTTGTCCACTAAACTAGCA+AGG | + | chr4_1:77439890-77439909 | None:intergenic | 40.0% | |
GCCATGTAATTGCCATTGAA+AGG | + | chr4_1:77439924-77439943 | None:intergenic | 40.0% | |
! | GGAGGTAGCATGTAGATTTT+AGG | - | chr4_1:77439966-77439985 | Msa0574060:intron | 40.0% |
! | AGTGGGATTTGGTCAACATT+TGG | + | chr4_1:77440196-77440215 | None:intergenic | 40.0% |
AGAATGTTTCCTCGTGAAGT+GGG | + | chr4_1:77440213-77440232 | None:intergenic | 40.0% | |
GCATATTGGATGCGATATTG+GGG | - | chr4_1:77440273-77440292 | Msa0574060:intron | 40.0% | |
TTAGAAGACCTTGAGAAAGG+TGG | - | chr4_1:77440809-77440828 | Msa0574060:intron | 40.0% | |
GTAGTTTAAGGAACAAGCCT+AGG | - | chr4_1:77440960-77440979 | Msa0574060:intron | 40.0% | |
CATTGGTGAGCATATCAACA+AGG | - | chr4_1:77441117-77441136 | Msa0574060:CDS | 40.0% | |
TTCAGAAGAGAACACTTGGA+TGG | + | chr4_1:77441148-77441167 | None:intergenic | 40.0% | |
! | ACAAAAAAAAGGGGGCGTAC+CGG | + | chr4_1:77434178-77434197 | None:intergenic | 45.0% |
! | AAGCTAGCTCTCTGAACTTG+AGG | - | chr4_1:77434343-77434362 | Msa0574060:three_prime_UTR | 45.0% |
GATAGATTGCCTACGCCTTT+CGG | - | chr4_1:77434467-77434486 | Msa0574060:three_prime_UTR | 45.0% | |
ATAGATTGCCTACGCCTTTC+GGG | - | chr4_1:77434468-77434487 | Msa0574060:three_prime_UTR | 45.0% | |
ACCTTAGTTTCAGGGTGATC+GGG | + | chr4_1:77434515-77434534 | None:intergenic | 45.0% | |
GACCTTAGTTTCAGGGTGAT+CGG | + | chr4_1:77434516-77434535 | None:intergenic | 45.0% | |
AGAAGCAATCACCAGTAAGG+AGG | - | chr4_1:77434699-77434718 | Msa0574060:CDS | 45.0% | |
GAAGCAATCACCAGTAAGGA+GGG | - | chr4_1:77434700-77434719 | Msa0574060:CDS | 45.0% | |
CTCTGGATTTAGTACTTGGG+AGG | - | chr4_1:77434823-77434842 | Msa0574060:intron | 45.0% | |
!! | CGTCAACCAATTTTCAAGGG+TGG | - | chr4_1:77435009-77435028 | Msa0574060:intron | 45.0% |
ATTGCGCAAGCTGTATCATG+TGG | - | chr4_1:77435096-77435115 | Msa0574060:intron | 45.0% | |
CACTTTCAGCACCATATGCA+AGG | + | chr4_1:77435229-77435248 | None:intergenic | 45.0% | |
GCTGAAAGTGACAGAAGTCT+TGG | - | chr4_1:77435239-77435258 | Msa0574060:intron | 45.0% | |
GACAGAAGTCTTGGAATTCC+TGG | - | chr4_1:77435248-77435267 | Msa0574060:intron | 45.0% | |
! | CAGCCAGAGAATTTGTTTGG+TGG | - | chr4_1:77435384-77435403 | Msa0574060:intron | 45.0% |
GGATCAAGATTTCGTCCATC+TGG | + | chr4_1:77435422-77435441 | None:intergenic | 45.0% | |
GTATCAATGCTCTTCAGGTC+TGG | + | chr4_1:77435443-77435462 | None:intergenic | 45.0% | |
CAGCTGTATCAATGCTCTTC+AGG | + | chr4_1:77435448-77435467 | None:intergenic | 45.0% | |
CTATTAAACTCCCGCCATGA+TGG | - | chr4_1:77435643-77435662 | Msa0574060:CDS | 45.0% | |
ATTAAACTCCCGCCATGATG+GGG | - | chr4_1:77435645-77435664 | Msa0574060:CDS | 45.0% | |
AATATGTACCCCATCATGGC+GGG | + | chr4_1:77435656-77435675 | None:intergenic | 45.0% | |
! | GCCATGATGGGGTACATATT+AGG | - | chr4_1:77435656-77435675 | Msa0574060:CDS | 45.0% |
CCCTAATATGTACCCCATCA+TGG | + | chr4_1:77435660-77435679 | None:intergenic | 45.0% | |
ATATTAGGGTCGACCCATTG+TGG | - | chr4_1:77435671-77435690 | Msa0574060:CDS | 45.0% | |
GTTGTTGCCAACTCTGTAGT+AGG | + | chr4_1:77435926-77435945 | None:intergenic | 45.0% | |
GTTTATTTGGTTGGAAGGCG+AGG | - | chr4_1:77436076-77436095 | Msa0574060:intron | 45.0% | |
! | TTTTGCAGTGCAAGCTGCTT+GGG | + | chr4_1:77436107-77436126 | None:intergenic | 45.0% |
ACCTCAAGACCAATACATGC+TGG | - | chr4_1:77436943-77436962 | Msa0574060:intron | 45.0% | |
!! | ACCAGCATGTATTGGTCTTG+AGG | + | chr4_1:77436947-77436966 | None:intergenic | 45.0% |
!!! | GATTTTATAGGTGTTGGCCC+TGG | - | chr4_1:77437621-77437640 | Msa0574060:intron | 45.0% |
!! | CCAACGGCAATTTGTTTTCC+AGG | + | chr4_1:77437642-77437661 | None:intergenic | 45.0% |
CCTGGAAAACAAATTGCCGT+TGG | - | chr4_1:77437639-77437658 | Msa0574060:intron | 45.0% | |
! | CTGATTACATTGCCACTTGC+TGG | - | chr4_1:77438021-77438040 | Msa0574060:intron | 45.0% |
!! | TTGCTGGCTTGTTTGTAGGA+TGG | - | chr4_1:77438037-77438056 | Msa0574060:intron | 45.0% |
TCCGGTAAAGATTACAGGCT+TGG | - | chr4_1:77438228-77438247 | Msa0574060:intron | 45.0% | |
CCCAAGCCTGTAATCTTTAC+CGG | + | chr4_1:77438232-77438251 | None:intergenic | 45.0% | |
CCGGTAAAGATTACAGGCTT+GGG | - | chr4_1:77438229-77438248 | Msa0574060:intron | 45.0% | |
TCCGGTAAAGATTACAGGCT+TGG | - | chr4_1:77438228-77438247 | Msa0574060:intron | 45.0% | |
CCCAAGCCTGTAATCTTTAC+CGG | + | chr4_1:77438232-77438251 | None:intergenic | 45.0% | |
CCGGTAAAGATTACAGGCTT+GGG | - | chr4_1:77438229-77438248 | Msa0574060:intron | 45.0% | |
AACAGAGCCTAAGTCGGATA+TGG | + | chr4_1:77438456-77438475 | None:intergenic | 45.0% | |
TATCCGACTTAGGCTCTGTT+TGG | - | chr4_1:77438456-77438475 | Msa0574060:intron | 45.0% | |
CACGAATACACAAGTGCAAG+TGG | + | chr4_1:77438913-77438932 | None:intergenic | 45.0% | |
GAAGAGGGCTTGTATGTATG+CGG | - | chr4_1:77439280-77439299 | Msa0574060:intron | 45.0% | |
TAGGTTTGTCGCAACAATCC+CGG | + | chr4_1:77439326-77439345 | None:intergenic | 45.0% | |
ACTTCTTGACGAACACACCT+AGG | + | chr4_1:77439848-77439867 | None:intergenic | 45.0% | |
TTTCCTCGTGAAGTGGGATT+TGG | + | chr4_1:77440207-77440226 | None:intergenic | 45.0% | |
CAGAATGTTTCCTCGTGAAG+TGG | + | chr4_1:77440214-77440233 | None:intergenic | 45.0% | |
CTGCTGACAATTGACATGGT+AGG | - | chr4_1:77440775-77440794 | Msa0574060:intron | 45.0% | |
! | GACTCTGAAGAAAAGAGGCT+TGG | - | chr4_1:77440938-77440957 | Msa0574060:intron | 45.0% |
TGTCAGTAGTTCATTCCAGG+TGG | + | chr4_1:77440996-77441015 | None:intergenic | 45.0% | |
AGCTGTCAGTAGTTCATTCC+AGG | + | chr4_1:77440999-77441018 | None:intergenic | 45.0% | |
GGAATGATCAGTTCCTTCTG+AGG | + | chr4_1:77441023-77441042 | None:intergenic | 45.0% | |
!!! | ACTATTTAATAAATAATTTT+AGG | - | chr4_1:77440038-77440057 | Msa0574060:intron | 5.0% |
!!! | CTATTTAATAAATAATTTTA+GGG | - | chr4_1:77440039-77440058 | Msa0574060:intron | 5.0% |
CCAACAACACACACTCGCAA+AGG | + | chr4_1:77434287-77434306 | None:intergenic | 50.0% | |
CCTTTGCGAGTGTGTGTTGT+TGG | - | chr4_1:77434284-77434303 | Msa0574060:three_prime_UTR | 50.0% | |
! | CGAGTGTGTGTTGTTGGAAG+TGG | - | chr4_1:77434290-77434309 | Msa0574060:three_prime_UTR | 50.0% |
! | AGAGAGCTAGCTTGCCTTCT+CGG | + | chr4_1:77434336-77434355 | None:intergenic | 50.0% |
ACCCGATCACCCTGAAACTA+AGG | - | chr4_1:77434511-77434530 | Msa0574060:three_prime_UTR | 50.0% | |
! | GACGCCACGTAATGGGAAAA+AGG | - | chr4_1:77434875-77434894 | Msa0574060:intron | 50.0% |
GTTGCGCCACCCTTGAAAAT+TGG | + | chr4_1:77435018-77435037 | None:intergenic | 50.0% | |
GAGCAGGTTGTCCTTGCATA+TGG | - | chr4_1:77435215-77435234 | Msa0574060:intron | 50.0% | |
!! | TGGTATAATGGGCACCCAGA+TGG | - | chr4_1:77435404-77435423 | Msa0574060:intron | 50.0% |
! | CTTTTGCAGTGCAAGCTGCT+TGG | + | chr4_1:77436108-77436127 | None:intergenic | 50.0% |
TGTTTGGCAAGGGACTACGT+TGG | - | chr4_1:77436242-77436261 | Msa0574060:CDS | 50.0% | |
CCTACAAACAAGCCAGCAAG+TGG | + | chr4_1:77438036-77438055 | None:intergenic | 50.0% | |
!! | CCACTTGCTGGCTTGTTTGT+AGG | - | chr4_1:77438033-77438052 | Msa0574060:intron | 50.0% |
TCAAAAGGCAGGCCATCTAC+CGG | + | chr4_1:77438092-77438111 | None:intergenic | 50.0% | |
ACTGCTAAGGGTCTGTTTGC+AGG | + | chr4_1:77438805-77438824 | None:intergenic | 50.0% | |
AGGGCTTGTATGTATGCGGT+TGG | - | chr4_1:77439284-77439303 | Msa0574060:intron | 50.0% | |
TTTGTCGCAACAATCCCGGT+TGG | + | chr4_1:77439322-77439341 | None:intergenic | 50.0% | |
ATGGCTGAAAAATCCCCTCG+AGG | - | chr4_1:77439939-77439958 | Msa0574060:intron | 50.0% | |
TGACCAAATCCCACTTCACG+AGG | - | chr4_1:77440201-77440220 | Msa0574060:CDS | 50.0% | |
TAACAACAGGGAAGAGGGAG+AGG | - | chr4_1:77440714-77440733 | Msa0574060:intron | 50.0% | |
!!! | CAGGTGGCTAGTTTTTCCCT+AGG | + | chr4_1:77440980-77440999 | None:intergenic | 50.0% |
CTAGGGAAAAACTAGCCACC+TGG | - | chr4_1:77440978-77440997 | Msa0574060:intron | 50.0% | |
CTACTGACAGCTACCTCAGA+AGG | - | chr4_1:77441007-77441026 | Msa0574060:intron | 50.0% | |
GTTGTTGGAAGTGGACCTGC+CGG | - | chr4_1:77434299-77434318 | Msa0574060:three_prime_UTR | 55.0% | |
CTTCTCGGCAGTGTAGCAAC+CGG | + | chr4_1:77434321-77434340 | None:intergenic | 55.0% | |
! | ATTGCCTACGCCTTTCGGGT+TGG | - | chr4_1:77434472-77434491 | Msa0574060:three_prime_UTR | 55.0% |
ATTCGTGCATGCCTTCGAGC+AGG | - | chr4_1:77435199-77435218 | Msa0574060:intron | 55.0% | |
TGCAAGGACAACCTGCTCGA+AGG | + | chr4_1:77435213-77435232 | None:intergenic | 55.0% | |
! | TGGTCTTGAGGTAGCTGCCT+TGG | + | chr4_1:77436935-77436954 | None:intergenic | 55.0% |
!! | GACAGTACTGGCCACGTATC+TGG | - | chr4_1:77437030-77437049 | Msa0574060:intron | 55.0% |
! | GTATGCGGTTGGCTGAAGAG+AGG | - | chr4_1:77439295-77439314 | Msa0574060:intron | 55.0% |
TGGCTGAAGAGAGGACCAAC+CGG | - | chr4_1:77439304-77439323 | Msa0574060:intron | 55.0% | |
TCAGTTCCGTGTCCCAGATC+CGG | - | chr4_1:77439801-77439820 | Msa0574060:intron | 55.0% | |
GGAGAATCTACCCCGGATCT+GGG | + | chr4_1:77439816-77439835 | None:intergenic | 55.0% | |
TGGAGAATCTACCCCGGATC+TGG | + | chr4_1:77439817-77439836 | None:intergenic | 55.0% | |
GAAAAATCCCCTCGAGGCAG+AGG | - | chr4_1:77439945-77439964 | Msa0574060:intron | 55.0% | |
TCAACAGCCGCACCAAAACC+AGG | - | chr4_1:77440842-77440861 | Msa0574060:intron | 55.0% | |
CGGTTGCTACACTGCCGAGA+AGG | - | chr4_1:77434319-77434338 | Msa0574060:three_prime_UTR | 60.0% | |
! | CGAACCAACCCGAAAGGCGT+AGG | + | chr4_1:77434479-77434498 | None:intergenic | 60.0% |
!! | CCTTTCGGGTTGGTTCGCTC+CGG | - | chr4_1:77434482-77434501 | Msa0574060:three_prime_UTR | 60.0% |
AGGGTGATCGGGTGCAACAC+CGG | + | chr4_1:77434504-77434523 | None:intergenic | 60.0% | |
CAAAGCGCACGCCAGATACG+TGG | + | chr4_1:77437044-77437063 | None:intergenic | 60.0% | |
GGCTGAAGAGAGGACCAACC+GGG | - | chr4_1:77439305-77439324 | Msa0574060:intron | 60.0% | |
CAGTTCCGTGTCCCAGATCC+GGG | - | chr4_1:77439802-77439821 | Msa0574060:intron | 60.0% | |
AGTTCCGTGTCCCAGATCCG+GGG | - | chr4_1:77439803-77439822 | Msa0574060:intron | 60.0% | |
! | TCTACCCCGGATCTGGGACA+CGG | + | chr4_1:77439810-77439829 | None:intergenic | 60.0% |
AAATCCCCTCGAGGCAGAGG+AGG | - | chr4_1:77439948-77439967 | Msa0574060:intron | 60.0% | |
TGCTACCTCCTCTGCCTCGA+GGG | + | chr4_1:77439956-77439975 | None:intergenic | 60.0% | |
ATGCTACCTCCTCTGCCTCG+AGG | + | chr4_1:77439957-77439976 | None:intergenic | 60.0% | |
AGCCGCACCAAAACCAGGCA+GGG | - | chr4_1:77440847-77440866 | Msa0574060:intron | 60.0% | |
!!! | GTCCCTGCCTGGTTTTGGTG+CGG | + | chr4_1:77440852-77440871 | None:intergenic | 60.0% |
GCACCAAAACCAGGCAGGGA+CGG | - | chr4_1:77440851-77440870 | Msa0574060:intron | 60.0% | |
! | AGACCGTCCCTGCCTGGTTT+TGG | + | chr4_1:77440857-77440876 | None:intergenic | 60.0% |
TCCTCGCGCCGTCGTTTCTC+CGG | - | chr4_1:77434156-77434175 | Msa0574060:three_prime_UTR | 65.0% | |
GGGGCGTACCGGAGAAACGA+CGG | + | chr4_1:77434167-77434186 | None:intergenic | 65.0% | |
TCGGCAGTGTAGCAACCGGC+AGG | + | chr4_1:77434317-77434336 | None:intergenic | 65.0% | |
CCGGAGCGAACCAACCCGAA+AGG | + | chr4_1:77434485-77434504 | None:intergenic | 65.0% | |
GCAGTGCAAGCTGCTTGGGC+TGG | + | chr4_1:77436103-77436122 | None:intergenic | 65.0% | |
GCTACCTCCTCTGCCTCGAG+GGG | + | chr4_1:77439955-77439974 | None:intergenic | 65.0% | |
CAGCCGCACCAAAACCAGGC+AGG | - | chr4_1:77440846-77440865 | Msa0574060:intron | 65.0% | |
TTGAGGAGACCGTCCCTGCC+TGG | + | chr4_1:77440863-77440882 | None:intergenic | 65.0% | |
ACCGGAGAAACGACGGCGCG+AGG | + | chr4_1:77434160-77434179 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_1 | gene | 77434156 | 77441438 | 77434156 | ID=Msa0574060;Name=Msa0574060 |
chr4_1 | mRNA | 77434156 | 77441438 | 77434156 | ID=Msa0574060-mRNA-1;Parent=Msa0574060;Name=Msa0574060-mRNA-1;_AED=0.19;_eAED=0.19;_QI=53|0.68|0.76|0.94|1|1|17|390|640 |
chr4_1 | exon | 77434156 | 77434797 | 77434156 | ID=Msa0574060-mRNA-1:exon:27315;Parent=Msa0574060-mRNA-1 |
chr4_1 | exon | 77435290 | 77435346 | 77435290 | ID=Msa0574060-mRNA-1:exon:27314;Parent=Msa0574060-mRNA-1 |
chr4_1 | exon | 77435471 | 77435498 | 77435471 | ID=Msa0574060-mRNA-1:exon:27313;Parent=Msa0574060-mRNA-1 |
chr4_1 | exon | 77435618 | 77435893 | 77435618 | ID=Msa0574060-mRNA-1:exon:27312;Parent=Msa0574060-mRNA-1 |
chr4_1 | exon | 77435979 | 77436049 | 77435979 | ID=Msa0574060-mRNA-1:exon:27311;Parent=Msa0574060-mRNA-1 |
chr4_1 | exon | 77436231 | 77436373 | 77436231 | ID=Msa0574060-mRNA-1:exon:27310;Parent=Msa0574060-mRNA-1 |
chr4_1 | exon | 77437472 | 77437539 | 77437472 | ID=Msa0574060-mRNA-1:exon:27309;Parent=Msa0574060-mRNA-1 |
chr4_1 | exon | 77437903 | 77437963 | 77437903 | ID=Msa0574060-mRNA-1:exon:27308;Parent=Msa0574060-mRNA-1 |
chr4_1 | exon | 77438513 | 77438711 | 77438513 | ID=Msa0574060-mRNA-1:exon:27307;Parent=Msa0574060-mRNA-1 |
chr4_1 | exon | 77438896 | 77438957 | 77438896 | ID=Msa0574060-mRNA-1:exon:27306;Parent=Msa0574060-mRNA-1 |
chr4_1 | exon | 77439449 | 77439522 | 77439449 | ID=Msa0574060-mRNA-1:exon:27305;Parent=Msa0574060-mRNA-1 |
chr4_1 | exon | 77439601 | 77439710 | 77439601 | ID=Msa0574060-mRNA-1:exon:27304;Parent=Msa0574060-mRNA-1 |
chr4_1 | exon | 77440113 | 77440229 | 77440113 | ID=Msa0574060-mRNA-1:exon:27303;Parent=Msa0574060-mRNA-1 |
chr4_1 | exon | 77440320 | 77440373 | 77440320 | ID=Msa0574060-mRNA-1:exon:27302;Parent=Msa0574060-mRNA-1 |
chr4_1 | exon | 77440477 | 77440590 | 77440477 | ID=Msa0574060-mRNA-1:exon:27301;Parent=Msa0574060-mRNA-1 |
chr4_1 | exon | 77441062 | 77441166 | 77441062 | ID=Msa0574060-mRNA-1:exon:27300;Parent=Msa0574060-mRNA-1 |
chr4_1 | exon | 77441254 | 77441438 | 77441254 | ID=Msa0574060-mRNA-1:exon:27299;Parent=Msa0574060-mRNA-1 |
chr4_1 | five_prime_UTR | 77441386 | 77441438 | 77441386 | ID=Msa0574060-mRNA-1:five_prime_utr;Parent=Msa0574060-mRNA-1 |
chr4_1 | CDS | 77441254 | 77441385 | 77441254 | ID=Msa0574060-mRNA-1:cds;Parent=Msa0574060-mRNA-1 |
chr4_1 | CDS | 77441062 | 77441166 | 77441062 | ID=Msa0574060-mRNA-1:cds;Parent=Msa0574060-mRNA-1 |
chr4_1 | CDS | 77440477 | 77440590 | 77440477 | ID=Msa0574060-mRNA-1:cds;Parent=Msa0574060-mRNA-1 |
chr4_1 | CDS | 77440320 | 77440373 | 77440320 | ID=Msa0574060-mRNA-1:cds;Parent=Msa0574060-mRNA-1 |
chr4_1 | CDS | 77440113 | 77440229 | 77440113 | ID=Msa0574060-mRNA-1:cds;Parent=Msa0574060-mRNA-1 |
chr4_1 | CDS | 77439601 | 77439710 | 77439601 | ID=Msa0574060-mRNA-1:cds;Parent=Msa0574060-mRNA-1 |
chr4_1 | CDS | 77439449 | 77439522 | 77439449 | ID=Msa0574060-mRNA-1:cds;Parent=Msa0574060-mRNA-1 |
chr4_1 | CDS | 77438896 | 77438957 | 77438896 | ID=Msa0574060-mRNA-1:cds;Parent=Msa0574060-mRNA-1 |
chr4_1 | CDS | 77438513 | 77438711 | 77438513 | ID=Msa0574060-mRNA-1:cds;Parent=Msa0574060-mRNA-1 |
chr4_1 | CDS | 77437903 | 77437963 | 77437903 | ID=Msa0574060-mRNA-1:cds;Parent=Msa0574060-mRNA-1 |
chr4_1 | CDS | 77437472 | 77437539 | 77437472 | ID=Msa0574060-mRNA-1:cds;Parent=Msa0574060-mRNA-1 |
chr4_1 | CDS | 77436231 | 77436373 | 77436231 | ID=Msa0574060-mRNA-1:cds;Parent=Msa0574060-mRNA-1 |
chr4_1 | CDS | 77435979 | 77436049 | 77435979 | ID=Msa0574060-mRNA-1:cds;Parent=Msa0574060-mRNA-1 |
chr4_1 | CDS | 77435618 | 77435893 | 77435618 | ID=Msa0574060-mRNA-1:cds;Parent=Msa0574060-mRNA-1 |
chr4_1 | CDS | 77435471 | 77435498 | 77435471 | ID=Msa0574060-mRNA-1:cds;Parent=Msa0574060-mRNA-1 |
chr4_1 | CDS | 77435290 | 77435346 | 77435290 | ID=Msa0574060-mRNA-1:cds;Parent=Msa0574060-mRNA-1 |
chr4_1 | CDS | 77434546 | 77434797 | 77434546 | ID=Msa0574060-mRNA-1:cds;Parent=Msa0574060-mRNA-1 |
chr4_1 | three_prime_UTR | 77434156 | 77434545 | 77434156 | ID=Msa0574060-mRNA-1:three_prime_utr;Parent=Msa0574060-mRNA-1 |
Gene Sequence |
Protein sequence |