Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0963090 | sp|P0DO23|CP2_ARATH | 67.688 | 359 | 115 | 1 | 4 | 362 | 29 | 386 | 0.0 | 536 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0963090 | G7KM53 | 98.922 | 371 | 4 | 0 | 1 | 371 | 1 | 371 | 0.0 | 773 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006880 | Msa0963090 | -0.821079 | 4.884711e-53 | -8.615850e-47 |
| Msa0020390 | Msa0963090 | -0.810967 | 8.856970e-51 | -8.615850e-47 |
| Msa0029260 | Msa0963090 | -0.800824 | 1.202035e-48 | -8.615850e-47 |
| Msa0038870 | Msa0963090 | -0.804717 | 1.888847e-49 | -8.615850e-47 |
| Msa0055150 | Msa0963090 | -0.833657 | 4.701666e-56 | -8.615850e-47 |
| Msa0073460 | Msa0963090 | -0.817211 | 3.709501e-52 | -8.615850e-47 |
| Msa0090030 | Msa0963090 | -0.810924 | 9.049271e-51 | -8.615850e-47 |
| Msa0092170 | Msa0963090 | -0.827903 | 1.209399e-54 | -8.615850e-47 |
| Msa0093420 | Msa0963090 | -0.817288 | 3.564093e-52 | -8.615850e-47 |
| Msa0103790 | Msa0963090 | -0.805836 | 1.101393e-49 | -8.615850e-47 |
| Msa0112300 | Msa0963090 | 0.812240 | 4.682923e-51 | -8.615850e-47 |
| Msa0118540 | Msa0963090 | -0.807937 | 3.960722e-50 | -8.615850e-47 |
| Msa0120370 | Msa0963090 | 0.804420 | 2.178705e-49 | -8.615850e-47 |
| Msa0614990 | Msa0963090 | -0.814176 | 1.760227e-51 | -8.615850e-47 |
| Msa0618200 | Msa0963090 | 0.803274 | 3.769457e-49 | -8.615850e-47 |
| Msa0620330 | Msa0963090 | -0.804185 | 2.439222e-49 | -8.615850e-47 |
| Msa0628290 | Msa0963090 | -0.826284 | 2.951842e-54 | -8.615850e-47 |
| Msa0630950 | Msa0963090 | -0.819290 | 1.255407e-52 | -8.615850e-47 |
| Msa0662630 | Msa0963090 | -0.812399 | 4.324089e-51 | -8.615850e-47 |
| Msa0669190 | Msa0963090 | -0.809928 | 1.484696e-50 | -8.615850e-47 |
| Msa0693790 | Msa0963090 | -0.848727 | 5.098574e-60 | -8.615850e-47 |
| Msa0716420 | Msa0963090 | 0.800226 | 1.591647e-48 | -8.615850e-47 |
| Msa0726080 | Msa0963090 | -0.802068 | 6.686920e-49 | -8.615850e-47 |
| Msa0799010 | Msa0963090 | 0.801823 | 7.506369e-49 | -8.615850e-47 |
| Msa0820530 | Msa0963090 | 0.801525 | 8.643033e-49 | -8.615850e-47 |
| Msa0140110 | Msa0963090 | -0.805103 | 1.569082e-49 | -8.615850e-47 |
| Msa0150260 | Msa0963090 | -0.812639 | 3.830749e-51 | -8.615850e-47 |
| Msa0165970 | Msa0963090 | -0.803879 | 2.824192e-49 | -8.615850e-47 |
| Msa0169300 | Msa0963090 | -0.800088 | 1.698338e-48 | -8.615850e-47 |
| Msa0175290 | Msa0963090 | 0.813949 | 1.975236e-51 | -8.615850e-47 |
| Msa0180510 | Msa0963090 | 0.806235 | 9.077117e-50 | -8.615850e-47 |
| Msa0183460 | Msa0963090 | -0.811974 | 5.351373e-51 | -8.615850e-47 |
| Msa0189520 | Msa0963090 | -0.842614 | 2.322677e-58 | -8.615850e-47 |
| Msa0190120 | Msa0963090 | -0.820243 | 7.603823e-53 | -8.615850e-47 |
| Msa0209080 | Msa0963090 | -0.813356 | 2.667958e-51 | -8.615850e-47 |
| Msa0225340 | Msa0963090 | -0.813845 | 2.082861e-51 | -8.615850e-47 |
| Msa0375980 | Msa0963090 | -0.822786 | 1.966479e-53 | -8.615850e-47 |
| Msa0386040 | Msa0963090 | -0.812575 | 3.956692e-51 | -8.615850e-47 |
| Msa0415430 | Msa0963090 | -0.801811 | 7.551197e-49 | -8.615850e-47 |
| Msa0467260 | Msa0963090 | 0.806763 | 7.024682e-50 | -8.615850e-47 |
| Msa0266360 | Msa0963090 | -0.816010 | 6.893945e-52 | -8.615850e-47 |
| Msa0271360 | Msa0963090 | -0.818707 | 1.702877e-52 | -8.615850e-47 |
| Msa0271890 | Msa0963090 | -0.811478 | 6.861606e-51 | -8.615850e-47 |
| Msa0309880 | Msa0963090 | -0.812538 | 4.032029e-51 | -8.615850e-47 |
| Msa0310860 | Msa0963090 | -0.808031 | 3.781587e-50 | -8.615850e-47 |
| Msa0320610 | Msa0963090 | -0.815658 | 8.257230e-52 | -8.615850e-47 |
| Msa0342290 | Msa0963090 | -0.811550 | 6.619526e-51 | -8.615850e-47 |
| Msa0489610 | Msa0963090 | -0.800091 | 1.695336e-48 | -8.615850e-47 |
| Msa0524600 | Msa0963090 | -0.832041 | 1.184999e-55 | -8.615850e-47 |
| Msa0527740 | Msa0963090 | -0.829530 | 4.889325e-55 | -8.615850e-47 |
| Msa0534410 | Msa0963090 | -0.824429 | 8.110409e-54 | -8.615850e-47 |
| Msa0544840 | Msa0963090 | -0.807011 | 6.225416e-50 | -8.615850e-47 |
| Msa0565620 | Msa0963090 | 0.811171 | 8.000634e-51 | -8.615850e-47 |
| Msa0574060 | Msa0963090 | 0.821580 | 3.743284e-53 | -8.615850e-47 |
| Msa0590650 | Msa0963090 | -0.823147 | 1.619711e-53 | -8.615850e-47 |
| Msa0846230 | Msa0963090 | -0.808894 | 2.474994e-50 | -8.615850e-47 |
| Msa0860900 | Msa0963090 | 0.813877 | 2.048539e-51 | -8.615850e-47 |
| Msa0861570 | Msa0963090 | -0.801749 | 7.774709e-49 | -8.615850e-47 |
| Msa0866010 | Msa0963090 | 0.818087 | 2.354177e-52 | -8.615850e-47 |
| Msa0879860 | Msa0963090 | -0.841240 | 5.356105e-58 | -8.615850e-47 |
| Msa0924150 | Msa0963090 | 0.950030 | 3.813843e-108 | -8.615850e-47 |
| Msa0947800 | Msa0963090 | -0.801919 | 7.174156e-49 | -8.615850e-47 |
| Msa0963090 | Msa0993240 | -0.818580 | 1.820492e-52 | -8.615850e-47 |
| Msa0963090 | Msa0994370 | -0.840665 | 7.582767e-58 | -8.615850e-47 |
| Msa0963090 | Msa1002600 | 0.810403 | 1.173108e-50 | -8.615850e-47 |
| Msa0963090 | Msa1010460 | -0.807152 | 5.811797e-50 | -8.615850e-47 |
| Msa0963090 | Msa1016000 | -0.800213 | 1.601807e-48 | -8.615850e-47 |
| Msa0963090 | Msa1028760 | 0.807710 | 4.425572e-50 | -8.615850e-47 |
| Msa0963090 | Msa1029080 | 0.837181 | 6.047347e-57 | -8.615850e-47 |
| Msa0963090 | Msa1043050 | -0.800629 | 1.317499e-48 | -8.615850e-47 |
| Msa0963090 | Msa1048760 | 0.800512 | 1.391967e-48 | -8.615850e-47 |
| Msa0963090 | Msa1067890 | 0.808825 | 2.560887e-50 | -8.615850e-47 |
| Msa0963090 | Msa1071320 | -0.803691 | 3.089317e-49 | -8.615850e-47 |
| Msa0963090 | Msa1081790 | 0.827677 | 1.370633e-54 | -8.615850e-47 |
| Msa0963090 | Msa1088250 | 0.810634 | 1.045397e-50 | -8.615850e-47 |
| Msa0963090 | Msa1089840 | -0.818951 | 1.499538e-52 | -8.615850e-47 |
| Msa0963090 | Msa1100530 | 0.818706 | 1.703956e-52 | -8.615850e-47 |
| Msa0963090 | Msa1103660 | 0.816728 | 4.762569e-52 | -8.615850e-47 |
| Msa0963090 | Msa1113230 | 0.839801 | 1.275091e-57 | -8.615850e-47 |
| Msa0963090 | Msa1129060 | 0.822253 | 2.615285e-53 | -8.615850e-47 |
| Msa0963090 | Msa1156170 | 0.836485 | 9.104980e-57 | -8.615850e-47 |
| Msa0963090 | Msa1166090 | 0.834397 | 3.069951e-56 | -8.615850e-47 |
| Msa0963090 | Msa1172130 | 0.812299 | 4.545656e-51 | -8.615850e-47 |
| Msa0963090 | Msa1188600 | 0.806987 | 6.298413e-50 | -8.615850e-47 |
| Msa0963090 | Msa1196540 | 0.824357 | 8.431708e-54 | -8.615850e-47 |
| Msa0963090 | Msa1200320 | -0.824109 | 9.643014e-54 | -8.615850e-47 |
| Msa0963090 | Msa1203880 | -0.806191 | 9.273236e-50 | -8.615850e-47 |
| Msa0963090 | Msa1242920 | 0.802555 | 5.307222e-49 | -8.615850e-47 |
| Msa0963090 | Msa1269300 | -0.814555 | 1.451456e-51 | -8.615850e-47 |
| Msa0963090 | Msa1296830 | -0.801848 | 7.417499e-49 | -8.615850e-47 |
| Msa0963090 | Msa1298550 | 0.806428 | 8.266813e-50 | -8.615850e-47 |
| Msa0963090 | Msa1299820 | 0.803157 | 3.985856e-49 | -8.615850e-47 |
| Msa0963090 | Msa1330890 | 0.805876 | 1.080120e-49 | -8.615850e-47 |
| Msa0963090 | Msa1331280 | -0.826543 | 2.561250e-54 | -8.615850e-47 |
| Msa0963090 | Msa1339190 | -0.804444 | 2.153812e-49 | -8.615850e-47 |
| Msa0963090 | Msa1363700 | -0.819060 | 1.415926e-52 | -8.615850e-47 |
| Msa0963090 | Msa1365860 | -0.824566 | 7.528713e-54 | -8.615850e-47 |
| Msa0963090 | Msa1371090 | -0.841108 | 5.802429e-58 | -8.615850e-47 |
| Msa0963090 | Msa1395600 | 0.835341 | 1.775302e-56 | -8.615850e-47 |
| Msa0963090 | Msa1396400 | 0.833354 | 5.597472e-56 | -8.615850e-47 |
| Msa0963090 | Msa1419640 | -0.814623 | 1.402008e-51 | -8.615850e-47 |
| Msa0963090 | Msa1436520 | -0.805871 | 1.082757e-49 | -8.615850e-47 |
| Msa0963090 | Msa1448630 | -0.807950 | 3.933933e-50 | -8.615850e-47 |
| Msa0963090 | Msa1465610 | 0.816554 | 5.209480e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0963090 | MtrunA17_Chr6g0483421 | 98.922 | 371 | 4 | 0 | 1 | 371 | 1 | 371 | 0.0 | 773 |
| Msa0963090 | MtrunA17_Chr1g0208991 | 62.634 | 372 | 133 | 2 | 6 | 371 | 24 | 395 | 1.49e-180 | 506 |
| Msa0963090 | MtrunA17_Chr8g0392571 | 61.756 | 353 | 130 | 3 | 23 | 371 | 3 | 354 | 4.54e-158 | 447 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0963090 | AT3G18210.2 | 67.688 | 359 | 115 | 1 | 4 | 362 | 29 | 386 | 0.0 | 536 |
| Msa0963090 | AT3G18210.1 | 67.688 | 359 | 115 | 1 | 4 | 362 | 29 | 386 | 0.0 | 536 |
| Msa0963090 | AT1G22950.1 | 59.834 | 361 | 142 | 1 | 10 | 370 | 29 | 386 | 2.18e-169 | 478 |
| Msa0963090 | AT1G48740.4 | 52.066 | 363 | 170 | 2 | 5 | 363 | 11 | 373 | 5.77e-133 | 385 |
| Msa0963090 | AT1G48740.2 | 52.368 | 359 | 167 | 2 | 5 | 359 | 11 | 369 | 2.84e-132 | 385 |
| Msa0963090 | AT5G43660.2 | 50.585 | 342 | 168 | 1 | 23 | 363 | 5 | 346 | 1.51e-131 | 380 |
| Msa0963090 | AT5G43660.4 | 50.585 | 342 | 168 | 1 | 23 | 363 | 54 | 395 | 5.83e-131 | 381 |
| Msa0963090 | AT5G43660.5 | 50.595 | 336 | 165 | 1 | 23 | 357 | 5 | 340 | 2.10e-129 | 375 |
| Msa0963090 | AT1G48740.1 | 50.400 | 375 | 170 | 3 | 5 | 363 | 11 | 385 | 2.14e-129 | 377 |
| Msa0963090 | AT5G43660.1 | 50.595 | 336 | 165 | 1 | 23 | 357 | 54 | 389 | 1.64e-128 | 375 |
| Msa0963090 | AT1G48700.4 | 53.548 | 310 | 144 | 0 | 60 | 369 | 1 | 310 | 8.30e-126 | 365 |
| Msa0963090 | AT1G48700.1 | 54.064 | 283 | 130 | 0 | 87 | 369 | 3 | 285 | 2.28e-117 | 342 |
| Msa0963090 | AT5G43660.3 | 52.000 | 300 | 143 | 1 | 23 | 321 | 5 | 304 | 7.99e-117 | 342 |
| Msa0963090 | AT1G48700.3 | 54.682 | 267 | 121 | 0 | 103 | 369 | 8 | 274 | 1.92e-111 | 327 |
| Msa0963090 | AT1G48700.2 | 54.682 | 267 | 121 | 0 | 103 | 369 | 8 | 274 | 1.92e-111 | 327 |
| Msa0963090 | AT1G48700.6 | 57.627 | 236 | 100 | 0 | 87 | 322 | 3 | 238 | 1.15e-103 | 305 |
| Msa0963090 | AT1G48740.3 | 54.580 | 262 | 118 | 1 | 103 | 363 | 27 | 288 | 7.15e-102 | 303 |
| Msa0963090 | AT1G48700.5 | 51.394 | 251 | 91 | 1 | 103 | 322 | 8 | 258 | 9.36e-91 | 273 |
| Msa0963090 | AT1G47940.1 | 34.615 | 208 | 80 | 10 | 122 | 317 | 87 | 250 | 4.29e-20 | 89.7 |
Find 108 sgRNAs with CRISPR-Local
Find 451 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCCTATTTATCGTCTTTC+AGG | 0.112447 | 6_3:-87443577 | Msa0963090:three_prime_UTR |
| TTATGGTGGTTTCATGAAAT+TGG | 0.135238 | 6_3:+87450253 | None:intergenic |
| ATTCGCCATTGTTCCGTTTC+CGG | 0.138062 | 6_3:+87450176 | None:intergenic |
| TATTGCTAGCATTGTTATTA+TGG | 0.162546 | 6_3:+87443485 | None:intergenic |
| TGGGGAAATTGAAGGAAATT+AGG | 0.172533 | 6_3:+87450273 | None:intergenic |
| CGGAATTGGGGATGAAATTA+TGG | 0.203004 | 6_3:+87450236 | None:intergenic |
| ACCATATTTATTCATTCTAT+TGG | 0.203059 | 6_3:+87445648 | None:intergenic |
| TCTGGTTTGTGATCCTTGTT+AGG | 0.230593 | 6_3:+87450129 | None:intergenic |
| CATGGATTTGTTGTTGAATA+TGG | 0.249598 | 6_3:-87445380 | Msa0963090:CDS |
| GTTTGATTTGGAAATGAAAA+TGG | 0.277981 | 6_3:+87450307 | None:intergenic |
| TATGGTGGTTTCATGAAATT+GGG | 0.288123 | 6_3:+87450254 | None:intergenic |
| CCCAATAGAATGAATAAATA+TGG | 0.307192 | 6_3:-87445649 | Msa0963090:CDS |
| GAAGATAAATTCACATTATC+AGG | 0.308517 | 6_3:-87447585 | Msa0963090:intron |
| TTTCTCCAACGAGCTGAAAA+TGG | 0.312093 | 6_3:+87450071 | None:intergenic |
| ACCAATGCTTGACAAGCTTA+TGG | 0.316587 | 6_3:-87445599 | Msa0963090:CDS |
| CCATATTTATTCATTCTATT+GGG | 0.324572 | 6_3:+87445649 | None:intergenic |
| GGGGAAATTGAAGGAAATTA+GGG | 0.329059 | 6_3:+87450274 | None:intergenic |
| CCTTACCCAAGCAAACATTC+AGG | 0.332217 | 6_3:+87444992 | None:intergenic |
| TCAAGATCATCGTAACCTTC+TGG | 0.336936 | 6_3:+87450111 | None:intergenic |
| TCCGTTTCCGGTTGCGGTGG+TGG | 0.340270 | 6_3:+87450188 | None:intergenic |
| GGCGATTCCACCACCGCAAC+CGG | 0.344813 | 6_3:-87450195 | Msa0963090:CDS |
| GGTGCTAGAGCGACAACATC+TGG | 0.351213 | 6_3:-87444390 | Msa0963090:CDS |
| TTGCTTAAGTATCTTCCTAA+TGG | 0.354170 | 6_3:-87449985 | Msa0963090:CDS |
| ACCCCTGAAAGACGATAAAT+AGG | 0.360352 | 6_3:+87443574 | None:intergenic |
| TGAATGCAACCGCATGAAAA+TGG | 0.364737 | 6_3:-87444174 | Msa0963090:CDS |
| CATGAAATTGGGGAAATTGA+AGG | 0.365046 | 6_3:+87450265 | None:intergenic |
| AAGGTTGCTCCTCCAACTTC+TGG | 0.375206 | 6_3:+87445413 | None:intergenic |
| TACAGCTTATTTAAATCATA+AGG | 0.379175 | 6_3:+87443632 | None:intergenic |
| CATTGTTCCGTTTCCGGTTG+CGG | 0.379724 | 6_3:+87450182 | None:intergenic |
| CGATGAACCTGAGAAACTTC+AGG | 0.387684 | 6_3:+87443438 | None:intergenic |
| TTTGAAGAGATGAATGTGTT+AGG | 0.390772 | 6_3:+87450337 | None:intergenic |
| TTGGAAATGAAAATGGTGTT+TGG | 0.419463 | 6_3:+87450314 | None:intergenic |
| TCAGTCTTCTATCCAGAAGT+TGG | 0.420333 | 6_3:-87445425 | Msa0963090:intron |
| ACTCTGTGACGTTCACCATT+AGG | 0.423325 | 6_3:+87449970 | None:intergenic |
| AATTGAAGGAAATTAGGGTT+AGG | 0.423846 | 6_3:+87450279 | None:intergenic |
| TGGTGGAATCGCCACCGTGT+GGG | 0.423882 | 6_3:+87450205 | None:intergenic |
| AGGTTACGATGATCTTGAAT+TGG | 0.426210 | 6_3:-87450106 | Msa0963090:CDS |
| TAACATTTACCTCTAGATAA+AGG | 0.428788 | 6_3:+87445562 | None:intergenic |
| ATCACCTTCTGCACCACATA+AGG | 0.432966 | 6_3:+87444352 | None:intergenic |
| CTGGTTTGTGATCCTTGTTA+GGG | 0.433763 | 6_3:+87450130 | None:intergenic |
| TCCACCACCGCAACCGGAAA+CGG | 0.434107 | 6_3:-87450189 | Msa0963090:CDS |
| GGGTGGCTGAAGCAAAATTT+CGG | 0.437545 | 6_3:-87445681 | Msa0963090:CDS |
| GCTTGTCAAGCATTGGTTCA+AGG | 0.441758 | 6_3:+87445605 | None:intergenic |
| AGAGATGAAACTGCATCAAA+AGG | 0.449552 | 6_3:-87444216 | Msa0963090:CDS |
| ATTGAAGGAAATTAGGGTTA+GGG | 0.450107 | 6_3:+87450280 | None:intergenic |
| TGTGAGAAACATGTAAATAC+AGG | 0.457323 | 6_3:-87444931 | Msa0963090:CDS |
| AGCCTATTTATCGTCTTTCA+GGG | 0.459641 | 6_3:-87443576 | Msa0963090:three_prime_UTR |
| ATTTGAAATACATAAATGTC+TGG | 0.461793 | 6_3:+87445883 | None:intergenic |
| GGTGGAATCGCCACCGTGTG+GGG | 0.465327 | 6_3:+87450206 | None:intergenic |
| GTTGCATTCACCACACCAAC+TGG | 0.467384 | 6_3:+87444187 | None:intergenic |
| CCTGAATGTTTGCTTGGGTA+AGG | 0.471548 | 6_3:-87444992 | Msa0963090:CDS |
| GCAACCTTGGATTCACATCA+TGG | 0.477939 | 6_3:-87445398 | Msa0963090:CDS |
| TATTTCCTAAAACATTGTAA+TGG | 0.478027 | 6_3:-87443608 | Msa0963090:three_prime_UTR |
| AGTAACCCTGAATGTTTGCT+TGG | 0.482387 | 6_3:-87444998 | Msa0963090:CDS |
| TCCATAAGCTTGTCAAGCAT+TGG | 0.489565 | 6_3:+87445598 | None:intergenic |
| TTTGATTATTCCCATGTCCC+TGG | 0.490719 | 6_3:-87444447 | Msa0963090:CDS |
| CACATGTGCTGCTACCAGAT+TGG | 0.494360 | 6_3:-87444138 | Msa0963090:intron |
| TTTCAGGGGTGTATGTAAGT+TGG | 0.497948 | 6_3:-87443561 | Msa0963090:three_prime_UTR |
| AGAAGTTGGAGGAGCAACCT+TGG | 0.500873 | 6_3:-87445411 | Msa0963090:CDS |
| CTTACCCAAGCAAACATTCA+GGG | 0.502083 | 6_3:+87444993 | None:intergenic |
| GTGTACAACTCGTGATGTAA+AGG | 0.503012 | 6_3:+87446000 | None:intergenic |
| GTAACCCTGAATGTTTGCTT+GGG | 0.506246 | 6_3:-87444997 | Msa0963090:CDS |
| TTGAAGAGATGAATGTGTTA+GGG | 0.508501 | 6_3:+87450338 | None:intergenic |
| ATTATTCCCATGTCCCTGGA+CGG | 0.509661 | 6_3:-87444443 | Msa0963090:CDS |
| TTTATTGCTTTCAGAAATGA+CGG | 0.523548 | 6_3:+87445952 | None:intergenic |
| CGCAACCGGAAACGGAACAA+TGG | 0.525816 | 6_3:-87450181 | Msa0963090:CDS |
| TTATTCCCATGTCCCTGGAC+GGG | 0.530246 | 6_3:-87444442 | Msa0963090:CDS |
| TTTGTTCGTCCTTTATCTAG+AGG | 0.531550 | 6_3:-87445571 | Msa0963090:intron |
| GGTGCTGTACTTGATGACTT+TGG | 0.533879 | 6_3:-87445628 | Msa0963090:CDS |
| GTCTTCTATCCAGAAGTTGG+AGG | 0.536705 | 6_3:-87445422 | Msa0963090:CDS |
| GTGGAATCGCCACCGTGTGG+GGG | 0.538052 | 6_3:+87450207 | None:intergenic |
| CACAGCCCGTCCAGGGACAT+GGG | 0.544918 | 6_3:+87444437 | None:intergenic |
| GTGGTGGAATCGCCACCGTG+TGG | 0.549336 | 6_3:+87450204 | None:intergenic |
| TGCAACAACTCACAAAACTC+TGG | 0.549644 | 6_3:+87445853 | None:intergenic |
| ATGGTGGTTTCATGAAATTG+GGG | 0.560699 | 6_3:+87450255 | None:intergenic |
| ATCGAATGAACTTCCTTATG+TGG | 0.565167 | 6_3:-87444365 | Msa0963090:CDS |
| CAATGGCGAATTCGAGAATG+AGG | 0.567057 | 6_3:-87450164 | Msa0963090:CDS |
| AAATCCATGATGTGAATCCA+AGG | 0.568992 | 6_3:+87445394 | None:intergenic |
| CAATCTGGTAGCAGCACATG+TGG | 0.570893 | 6_3:+87444139 | None:intergenic |
| TGTTCCGTTTCCGGTTGCGG+TGG | 0.583469 | 6_3:+87450185 | None:intergenic |
| ATCAAAAGGATTTCTCCAGT+TGG | 0.586414 | 6_3:-87444202 | Msa0963090:CDS |
| TACTTCTGTAGGTTTCCATG+TGG | 0.589079 | 6_3:-87445031 | Msa0963090:intron |
| GAAGATAAAGATCTTGACTT+GGG | 0.589228 | 6_3:-87445356 | Msa0963090:intron |
| CATCGTGGTCGACACCGTCA+TGG | 0.589595 | 6_3:-87444411 | Msa0963090:CDS |
| GCCTATTTATCGTCTTTCAG+GGG | 0.591238 | 6_3:-87443575 | Msa0963090:three_prime_UTR |
| CGCAAAGGAAGGTGAATCCA+CGG | 0.591559 | 6_3:-87443717 | Msa0963090:CDS |
| AATTGGGGATGAAATTATGG+TGG | 0.593199 | 6_3:+87450239 | None:intergenic |
| TCCAACGAGCTGAAAATGGA+AGG | 0.598397 | 6_3:+87450075 | None:intergenic |
| GTGCTAGAGCGACAACATCT+GGG | 0.600956 | 6_3:-87444389 | Msa0963090:CDS |
| AAGGATTTCTCCAGTTGGTG+TGG | 0.601245 | 6_3:-87444197 | Msa0963090:CDS |
| AGGTTTCCATGTGGATGACT+CGG | 0.601410 | 6_3:-87445022 | Msa0963090:CDS |
| TTGTGAGTTGTTGCAAGCTG+AGG | 0.602832 | 6_3:-87445845 | Msa0963090:intron |
| TGAAGATAAAGATCTTGACT+TGG | 0.605076 | 6_3:-87445357 | Msa0963090:CDS |
| CAGGAGTTGATCGCAAAGGA+AGG | 0.612319 | 6_3:-87443728 | Msa0963090:CDS |
| GATGGAGCACAGCCCGTCCA+GGG | 0.614903 | 6_3:+87444430 | None:intergenic |
| AATACATAAATGTCTGGAGA+GGG | 0.618356 | 6_3:+87445889 | None:intergenic |
| AACAAGGATCACAAACCAGA+AGG | 0.623650 | 6_3:-87450126 | Msa0963090:CDS |
| GCTGAGATTGAACCCTAACA+AGG | 0.623983 | 6_3:-87450142 | Msa0963090:CDS |
| TTGTCGCTCTAGCACCATGA+CGG | 0.640968 | 6_3:+87444397 | None:intergenic |
| GACGGCACAAAGAATGCAGT+AGG | 0.640971 | 6_3:+87445970 | None:intergenic |
| ACTTCCTTATGTGGTGCAGA+AGG | 0.651748 | 6_3:-87444356 | Msa0963090:intron |
| AAATACATAAATGTCTGGAG+AGG | 0.660927 | 6_3:+87445888 | None:intergenic |
| ATTACAGGAGTTGATCGCAA+AGG | 0.661240 | 6_3:-87443732 | Msa0963090:intron |
| GGACGGGCTGTGCTCCATCG+TGG | 0.679067 | 6_3:-87444426 | Msa0963090:CDS |
| TTACTTCCGAGTCATCCACA+TGG | 0.714166 | 6_3:+87445016 | None:intergenic |
| GAGCAAAAGAAACTACGCCG+TGG | 0.719034 | 6_3:+87443700 | None:intergenic |
| AAATACAGGAAGTCAACCAG+AGG | 0.719088 | 6_3:-87444917 | Msa0963090:intron |
| CATGACGGTGTCGACCACGA+TGG | 0.727033 | 6_3:+87444412 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATTTTTTTAAAATTT+TGG | - | chr6_3:87444835-87444854 | Msa0963090:intron | 0.0% |
| !! | AAAAAAAAAAAAAAAAAAAA+AGG | + | chr6_3:87449949-87449968 | None:intergenic | 0.0% |
| !!! | GATCTTTATTTTTTAAATTT+TGG | - | chr6_3:87445372-87445391 | Msa0963090:CDS | 10.0% |
| !!! | TCTTTATTTTTTAAATTTTG+GGG | - | chr6_3:87445374-87445393 | Msa0963090:CDS | 10.0% |
| !! | ATGGTATAAAAATATATATT+TGG | + | chr6_3:87446278-87446297 | None:intergenic | 10.0% |
| !! | GATAATAAAACATAATTTAA+TGG | - | chr6_3:87446979-87446998 | Msa0963090:intron | 10.0% |
| !! | TTATTCTATTAAAATGATTT+AGG | - | chr6_3:87448314-87448333 | Msa0963090:intron | 10.0% |
| !! | TATTCTATTAAAATGATTTA+GGG | - | chr6_3:87448315-87448334 | Msa0963090:intron | 10.0% |
| !!! | ATTTTACTAGCTTTTTTTTT+TGG | - | chr6_3:87444192-87444211 | Msa0963090:CDS | 15.0% |
| !!! | TTTTACTAGCTTTTTTTTTT+GGG | - | chr6_3:87444193-87444212 | Msa0963090:CDS | 15.0% |
| !! | AAAAAAAGTGAAATTTAACA+AGG | - | chr6_3:87445311-87445330 | Msa0963090:intron | 15.0% |
| !!! | ATTAATGAAAGATTTTTCAA+AGG | + | chr6_3:87446070-87446089 | None:intergenic | 15.0% |
| !!! | AATATCATTGATAATGATTA+TGG | + | chr6_3:87446127-87446146 | None:intergenic | 15.0% |
| !!! | TATTTTTATACCATTATTTC+TGG | - | chr6_3:87446284-87446303 | Msa0963090:intron | 15.0% |
| !! | ATATATATATATAGACAAGT+AGG | - | chr6_3:87446452-87446471 | Msa0963090:intron | 15.0% |
| !! | TATAATATGAATTCTCTTAA+AGG | - | chr6_3:87447491-87447510 | Msa0963090:intron | 15.0% |
| !! | ATAATATGAATTCTCTTAAA+GGG | - | chr6_3:87447492-87447511 | Msa0963090:intron | 15.0% |
| !!! | AATGAAGAAAAAAACTATTT+TGG | + | chr6_3:87447740-87447759 | None:intergenic | 15.0% |
| !! | ATTCTATTAAAATGATTTAG+GGG | - | chr6_3:87448316-87448335 | Msa0963090:intron | 15.0% |
| !!! | TATATATTCTACTTTTATCT+AGG | + | chr6_3:87448997-87449016 | None:intergenic | 15.0% |
| !! | GAATATATATGTATAGAAAA+AGG | - | chr6_3:87449008-87449027 | Msa0963090:intron | 15.0% |
| !!! | ATATAATATTATTTTGTACC+AGG | + | chr6_3:87449819-87449838 | None:intergenic | 15.0% |
| !! | GTAATATCATAGAAATTATA+TGG | + | chr6_3:87450080-87450099 | None:intergenic | 15.0% |
| !! | TATAATTTCTATGATATTAC+AGG | - | chr6_3:87450080-87450099 | Msa0963090:CDS | 15.0% |
| !! | ATTTACAGTTTATAGTACAA+TGG | - | chr6_3:87444084-87444103 | Msa0963090:intron | 20.0% |
| !! | ATCAAAACATAAACATACTA+CGG | + | chr6_3:87444420-87444439 | None:intergenic | 20.0% |
| !!! | TTTTATTTTACAGTTCGAAT+CGG | + | chr6_3:87445013-87445032 | None:intergenic | 20.0% |
| !! | ACTGTTAGTAATTTAAGAAA+AGG | - | chr6_3:87445179-87445198 | Msa0963090:intron | 20.0% |
| !!! | TTGTACGATGAAAATTTTAT+TGG | - | chr6_3:87445903-87445922 | Msa0963090:CDS | 20.0% |
| !! | ATTTATGGTGAAATGTTATT+TGG | - | chr6_3:87445972-87445991 | Msa0963090:CDS | 20.0% |
| !!! | TATTTAAAACCATAAAAGTG+AGG | + | chr6_3:87446154-87446173 | None:intergenic | 20.0% |
| !! | GAAACATCTTAAAATTATGT+TGG | + | chr6_3:87446181-87446200 | None:intergenic | 20.0% |
| !!! | TTTTGTTTTAGTTTTGTTGT+TGG | + | chr6_3:87446667-87446686 | None:intergenic | 20.0% |
| !! | TACTGTATATATACATAATC+AGG | - | chr6_3:87447002-87447021 | Msa0963090:intron | 20.0% |
| !! | GAGAATTCATATTATACTAA+AGG | + | chr6_3:87447487-87447506 | None:intergenic | 20.0% |
| !!! | AAATATGTTGATTGTTACTT+TGG | - | chr6_3:87447695-87447714 | Msa0963090:intron | 20.0% |
| !!! | ATTTGAAATACATAAATGTC+TGG | + | chr6_3:87447947-87447966 | None:intergenic | 20.0% |
| !! | ATCATTATCAATAGTATATG+CGG | - | chr6_3:87448022-87448041 | Msa0963090:intron | 20.0% |
| !!! | AGATTGAAAATTTTGAGAAA+TGG | - | chr6_3:87448125-87448144 | Msa0963090:intron | 20.0% |
| !!! | GATTGAAAATTTTGAGAAAT+GGG | - | chr6_3:87448126-87448145 | Msa0963090:intron | 20.0% |
| !! | CCATATTTATTCATTCTATT+GGG | + | chr6_3:87448181-87448200 | None:intergenic | 20.0% |
| !! | ACCATATTTATTCATTCTAT+TGG | + | chr6_3:87448182-87448201 | None:intergenic | 20.0% |
| !! | TTCTATTAAAATGATTTAGG+GGG | - | chr6_3:87448317-87448336 | Msa0963090:intron | 20.0% |
| !! | TAATCAGAAATATTAACATC+AGG | + | chr6_3:87448759-87448778 | None:intergenic | 20.0% |
| !! | TTATAGACAAAAGTAGTTAA+TGG | + | chr6_3:87448965-87448984 | None:intergenic | 20.0% |
| !!! | ACTTTTGTCTATAAACTTAT+TGG | - | chr6_3:87448971-87448990 | Msa0963090:intron | 20.0% |
| !!! | ATTTTTGCATGATTTTACAA+GGG | + | chr6_3:87449108-87449127 | None:intergenic | 20.0% |
| !!! | TATTTTTGCATGATTTTACA+AGG | + | chr6_3:87449109-87449128 | None:intergenic | 20.0% |
| !! | TACAGCTTATTTAAATCATA+AGG | + | chr6_3:87450198-87450217 | None:intergenic | 20.0% |
| !! | TATTTCCTAAAACATTGTAA+TGG | - | chr6_3:87450219-87450238 | Msa0963090:exon | 20.0% |
| !!! | GTTTGATTTGGAAATGAAAA+TGG | + | chr6_3:87443523-87443542 | None:intergenic | 25.0% |
| !! | TCATTTTCTTAAATCACTAC+CGG | + | chr6_3:87443979-87443998 | None:intergenic | 25.0% |
| ! | AATTCGATGAACATAACATA+GGG | - | chr6_3:87444041-87444060 | Msa0963090:intron | 25.0% |
| !!! | GCTGTTTTTATTAGCTATAT+TGG | - | chr6_3:87444228-87444247 | Msa0963090:CDS | 25.0% |
| ! | TCAAAACATAAACATACTAC+GGG | + | chr6_3:87444419-87444438 | None:intergenic | 25.0% |
| !! | TTTGTGAAGTGTTTATGTTA+TGG | - | chr6_3:87444502-87444521 | Msa0963090:intron | 25.0% |
| !! | TTGTGAAGTGTTTATGTTAT+GGG | - | chr6_3:87444503-87444522 | Msa0963090:intron | 25.0% |
| ! | TAAAATAAGTCAATCCAAAC+AGG | + | chr6_3:87444551-87444570 | None:intergenic | 25.0% |
| !!! | TCAGCTTATTTTAATTTCTC+AGG | - | chr6_3:87444633-87444652 | Msa0963090:intron | 25.0% |
| !!! | TCAGCTATTTCTATAACAAA+AGG | + | chr6_3:87444716-87444735 | None:intergenic | 25.0% |
| ! | CGTATATATGATAAGTTCTT+AGG | - | chr6_3:87444745-87444764 | Msa0963090:intron | 25.0% |
| ! | TAAATTAAAACCTTTCACCT+TGG | + | chr6_3:87444796-87444815 | None:intergenic | 25.0% |
| !!! | AAGAATGTTGTTAACTTGTT+AGG | - | chr6_3:87444971-87444990 | Msa0963090:CDS | 25.0% |
| ! | AATGAACTCAATAATTAGAG+TGG | - | chr6_3:87445123-87445142 | Msa0963090:intron | 25.0% |
| !!! | AATTTTGGGGATAAATTTGA+TGG | - | chr6_3:87445387-87445406 | Msa0963090:CDS | 25.0% |
| !!! | ATTTTGGGGATAAATTTGAT+GGG | - | chr6_3:87445388-87445407 | Msa0963090:CDS | 25.0% |
| !!! | TTTTGAGTAAACTAAGCATT+TGG | - | chr6_3:87445714-87445733 | Msa0963090:intron | 25.0% |
| !!! | ATTTGGATTTTGAGTAAACT+AGG | - | chr6_3:87445731-87445750 | Msa0963090:intron | 25.0% |
| !!! | TTTGGATTTTGAGTAAACTA+GGG | - | chr6_3:87445732-87445751 | Msa0963090:intron | 25.0% |
| ! | TGAAAACTGAAAACGTTATT+GGG | - | chr6_3:87445808-87445827 | Msa0963090:intron | 25.0% |
| ! | ATTCAAAAAGAAAAGGCAAA+GGG | + | chr6_3:87446023-87446042 | None:intergenic | 25.0% |
| !!! | ATATTATTGCCTCACTTTTA+TGG | - | chr6_3:87446142-87446161 | Msa0963090:intron | 25.0% |
| ! | GAAGATAAATTCACATTATC+AGG | - | chr6_3:87446242-87446261 | Msa0963090:intron | 25.0% |
| !! | TAATACTTTTACGGTTTAAC+CGG | - | chr6_3:87446492-87446511 | Msa0963090:intron | 25.0% |
| ! | AGTGATATACAATTAGAGAA+AGG | - | chr6_3:87446702-87446721 | Msa0963090:intron | 25.0% |
| ! | GTGATATACAATTAGAGAAA+GGG | - | chr6_3:87446703-87446722 | Msa0963090:intron | 25.0% |
| !! | CAAAAGTGAAAAAGTAGTTT+TGG | - | chr6_3:87446928-87446947 | Msa0963090:intron | 25.0% |
| ! | CTAATTCAAAGCTTAAGAAA+GGG | - | chr6_3:87447171-87447190 | Msa0963090:intron | 25.0% |
| ! | AGTAACAATCAACATATTTC+TGG | + | chr6_3:87447694-87447713 | None:intergenic | 25.0% |
| ! | ATAAGAATTCTTGTAAGTCT+TGG | + | chr6_3:87447796-87447815 | None:intergenic | 25.0% |
| ! | TTTATTGCTTTCAGAAATGA+CGG | + | chr6_3:87447878-87447897 | None:intergenic | 25.0% |
| ! | CCCAATAGAATGAATAAATA+TGG | - | chr6_3:87448178-87448197 | Msa0963090:intron | 25.0% |
| ! | TAACATTTACCTCTAGATAA+AGG | + | chr6_3:87448268-87448287 | None:intergenic | 25.0% |
| ! | TAGAGGTAAATGTTATGTAA+TGG | - | chr6_3:87448273-87448292 | Msa0963090:intron | 25.0% |
| !! | CTTTTCTAATAATTCCCATA+GGG | - | chr6_3:87448514-87448533 | Msa0963090:intron | 25.0% |
| ! | TGGTTATATGAATATAGCTA+TGG | + | chr6_3:87448540-87448559 | None:intergenic | 25.0% |
| ! | AATAACAATGCAATGTTGTA+TGG | + | chr6_3:87448599-87448618 | None:intergenic | 25.0% |
| !!! | TAAATGCTTACTTTTGATTG+AGG | - | chr6_3:87448657-87448676 | Msa0963090:intron | 25.0% |
| ! | ATTTGAGCTTAATGAAATGT+TGG | - | chr6_3:87449059-87449078 | Msa0963090:intron | 25.0% |
| ! | AAAATAAAATAATGCTCCTC+AGG | - | chr6_3:87449123-87449142 | Msa0963090:intron | 25.0% |
| ! | CATCTTTAATTAGCTACTAA+AGG | + | chr6_3:87449556-87449575 | None:intergenic | 25.0% |
| ! | AACTACAAATACTAATCACA+AGG | + | chr6_3:87449795-87449814 | None:intergenic | 25.0% |
| ! | AAAACTGAAATTTCAGTATC+TGG | + | chr6_3:87450006-87450025 | None:intergenic | 25.0% |
| ! | AAATCGAACCTATTTATTCA+CGG | - | chr6_3:87450039-87450058 | Msa0963090:CDS | 25.0% |
| !! | AGAAACCATTACAATGTTTT+AGG | + | chr6_3:87450227-87450246 | None:intergenic | 25.0% |
| !! | TATTGCTAGCATTGTTATTA+TGG | + | chr6_3:87450345-87450364 | None:intergenic | 25.0% |
| !!! | TGTTAGGGTTTTGTTGAAAT+TGG | + | chr6_3:87443477-87443496 | None:intergenic | 30.0% |
| TTGAAGAGATGAATGTGTTA+GGG | + | chr6_3:87443492-87443511 | None:intergenic | 30.0% | |
| TTTGAAGAGATGAATGTGTT+AGG | + | chr6_3:87443493-87443512 | None:intergenic | 30.0% | |
| TTGGAAATGAAAATGGTGTT+TGG | + | chr6_3:87443516-87443535 | None:intergenic | 30.0% | |
| ATTGAAGGAAATTAGGGTTA+GGG | + | chr6_3:87443550-87443569 | None:intergenic | 30.0% | |
| AATTGAAGGAAATTAGGGTT+AGG | + | chr6_3:87443551-87443570 | None:intergenic | 30.0% | |
| TATGGTGGTTTCATGAAATT+GGG | + | chr6_3:87443576-87443595 | None:intergenic | 30.0% | |
| TTATGGTGGTTTCATGAAAT+TGG | + | chr6_3:87443577-87443596 | None:intergenic | 30.0% | |
| TTGCTTAAGTATCTTCCTAA+TGG | - | chr6_3:87443842-87443861 | Msa0963090:intron | 30.0% | |
| GAATTCGATGAACATAACAT+AGG | - | chr6_3:87444040-87444059 | Msa0963090:intron | 30.0% | |
| AAATAAGCTGTTATCCAAAG+AGG | - | chr6_3:87444393-87444412 | Msa0963090:CDS | 30.0% | |
| ! | TGTGAAGTGTTTATGTTATG+GGG | - | chr6_3:87444504-87444523 | Msa0963090:intron | 30.0% |
| GGGAAAAGGAAATTAAACAA+GGG | - | chr6_3:87444524-87444543 | Msa0963090:intron | 30.0% | |
| TATAAGCTGTTTATCCAAAC+AGG | - | chr6_3:87444769-87444788 | Msa0963090:intron | 30.0% | |
| ATAAGCTGTTTATCCAAACA+GGG | - | chr6_3:87444770-87444789 | Msa0963090:intron | 30.0% | |
| ! | ATGAGTTGTGTTTTATGCAT+AGG | - | chr6_3:87444867-87444886 | Msa0963090:intron | 30.0% |
| !! | TGTTTTATTCATTGCACAAG+TGG | - | chr6_3:87444948-87444967 | Msa0963090:CDS | 30.0% |
| GTAGAGCATGTTTATGAATT+TGG | - | chr6_3:87445502-87445521 | Msa0963090:intron | 30.0% | |
| AACACAACAATCTCACAATT+GGG | + | chr6_3:87445625-87445644 | None:intergenic | 30.0% | |
| ! | CTGAATGGACTTGATAATTT+AGG | - | chr6_3:87445670-87445689 | Msa0963090:CDS | 30.0% |
| AACTTTGCTAAGCATCAAAT+GGG | + | chr6_3:87445784-87445803 | None:intergenic | 30.0% | |
| TAACTTTGCTAAGCATCAAA+TGG | + | chr6_3:87445785-87445804 | None:intergenic | 30.0% | |
| GTGAAAACTGAAAACGTTAT+TGG | - | chr6_3:87445807-87445826 | Msa0963090:intron | 30.0% | |
| AAATTTGTGAAGCAACAACT+GGG | + | chr6_3:87445956-87445975 | None:intergenic | 30.0% | |
| TAAATTTGTGAAGCAACAAC+TGG | + | chr6_3:87445957-87445976 | None:intergenic | 30.0% | |
| ! | GTTGTTGCTTCACAAATTTA+TGG | - | chr6_3:87445957-87445976 | Msa0963090:CDS | 30.0% |
| !! | GTTATTTGGTGTTGATGTAT+TGG | - | chr6_3:87445986-87446005 | Msa0963090:CDS | 30.0% |
| CATTCAAAAAGAAAAGGCAA+AGG | + | chr6_3:87446024-87446043 | None:intergenic | 30.0% | |
| ! | CTTTGCCTTTTCTTTTTGAA+TGG | - | chr6_3:87446022-87446041 | Msa0963090:intron | 30.0% |
| ACCATCCATTCAAAAAGAAA+AGG | + | chr6_3:87446030-87446049 | None:intergenic | 30.0% | |
| ! | TTTTCTTTTTGAATGGATGG+TGG | - | chr6_3:87446029-87446048 | Msa0963090:intron | 30.0% |
| ! | TTTCTTTTTGAATGGATGGT+GGG | - | chr6_3:87446030-87446049 | Msa0963090:intron | 30.0% |
| TTAATGCTTGAAAGTTGCTA+TGG | - | chr6_3:87446085-87446104 | Msa0963090:intron | 30.0% | |
| !! | ACAAAAGCATCCAGAAATAA+TGG | + | chr6_3:87446297-87446316 | None:intergenic | 30.0% |
| CATAAAGTTCTGTGTGTTAA+TGG | - | chr6_3:87446582-87446601 | Msa0963090:intron | 30.0% | |
| AGATGGAGAGAAAATGAAAA+GGG | - | chr6_3:87446605-87446624 | Msa0963090:intron | 30.0% | |
| GAATATTTAATCACACGAGA+GGG | + | chr6_3:87446958-87446977 | None:intergenic | 30.0% | |
| TGAATATTTAATCACACGAG+AGG | + | chr6_3:87446959-87446978 | None:intergenic | 30.0% | |
| !! | TGAAAATTACAGGTTGATAC+GGG | + | chr6_3:87447067-87447086 | None:intergenic | 30.0% |
| !! | GTGAAAATTACAGGTTGATA+CGG | + | chr6_3:87447068-87447087 | None:intergenic | 30.0% |
| ! | GATTTTTCTCCAGTTTTTTG+CGG | - | chr6_3:87447117-87447136 | Msa0963090:intron | 30.0% |
| ! | ATTTTTCTCCAGTTTTTTGC+GGG | - | chr6_3:87447118-87447137 | Msa0963090:intron | 30.0% |
| !! | CCTTTCTTAAGCTTTGAATT+AGG | + | chr6_3:87447173-87447192 | None:intergenic | 30.0% |
| CCTAATTCAAAGCTTAAGAA+AGG | - | chr6_3:87447170-87447189 | Msa0963090:intron | 30.0% | |
| AGGAAGTAGGATTCATTATT+AGG | + | chr6_3:87447329-87447348 | None:intergenic | 30.0% | |
| AAATGTCAAAATCAGGAAGT+AGG | + | chr6_3:87447342-87447361 | None:intergenic | 30.0% | |
| ATTTGTCTAACCACAATATG+AGG | - | chr6_3:87447432-87447451 | Msa0963090:intron | 30.0% | |
| TACTCTTGTCACAATTACAT+GGG | - | chr6_3:87447579-87447598 | Msa0963090:intron | 30.0% | |
| ! | CTTTGGAGATATATTCAACT+TGG | - | chr6_3:87447712-87447731 | Msa0963090:intron | 30.0% |
| AATACATAAATGTCTGGAGA+GGG | + | chr6_3:87447941-87447960 | None:intergenic | 30.0% | |
| AAATACATAAATGTCTGGAG+AGG | + | chr6_3:87447942-87447961 | None:intergenic | 30.0% | |
| ! | AAGAGTACACTTACAACTTT+GGG | + | chr6_3:87448057-87448076 | None:intergenic | 30.0% |
| !! | TGAAAATTTTGAGAAATGGG+TGG | - | chr6_3:87448129-87448148 | Msa0963090:intron | 30.0% |
| !! | CATGGATTTGTTGTTGAATA+TGG | - | chr6_3:87448447-87448466 | Msa0963090:intron | 30.0% |
| TGAAGATAAAGATCTTGACT+TGG | - | chr6_3:87448470-87448489 | Msa0963090:intron | 30.0% | |
| GAAGATAAAGATCTTGACTT+GGG | - | chr6_3:87448471-87448490 | Msa0963090:intron | 30.0% | |
| ! | GCTTTTCTAATAATTCCCAT+AGG | - | chr6_3:87448513-87448532 | Msa0963090:intron | 30.0% |
| AATGTTGTATGGTTCATGTA+AGG | + | chr6_3:87448588-87448607 | None:intergenic | 30.0% | |
| !!! | GGCCATATGAGTTTTATTAT+CGG | - | chr6_3:87448678-87448697 | Msa0963090:intron | 30.0% |
| CACCGATAATAAAACTCATA+TGG | + | chr6_3:87448683-87448702 | None:intergenic | 30.0% | |
| ATCCAACAGCATCAAAATAT+TGG | + | chr6_3:87448707-87448726 | None:intergenic | 30.0% | |
| AATATTAACATCAGGAATGC+AGG | + | chr6_3:87448751-87448770 | None:intergenic | 30.0% | |
| TGTGAGAAACATGTAAATAC+AGG | - | chr6_3:87448896-87448915 | Msa0963090:intron | 30.0% | |
| ATTTCATTAAGCTCAAATGC+AGG | + | chr6_3:87449057-87449076 | None:intergenic | 30.0% | |
| TACAAACAGATACACAAACT+CGG | + | chr6_3:87449167-87449186 | None:intergenic | 30.0% | |
| GATTGAATAATTGCATCATG+TGG | + | chr6_3:87449216-87449235 | None:intergenic | 30.0% | |
| CATGATGCAATTATTCAATC+AGG | - | chr6_3:87449216-87449235 | Msa0963090:intron | 30.0% | |
| !!! | GTGGTTGTACACTTTTTTTA+CGG | - | chr6_3:87449331-87449350 | Msa0963090:intron | 30.0% |
| TAGAAAAAGACTTACCAATC+TGG | + | chr6_3:87449706-87449725 | None:intergenic | 30.0% | |
| GATTAGTATTTGTAGTTTCC+TGG | - | chr6_3:87449798-87449817 | Msa0963090:intron | 30.0% | |
| ACTTGAAGATTAAAGAACCT+TGG | - | chr6_3:87449847-87449866 | Msa0963090:intron | 30.0% | |
| !!! | GGTTTTGTTGAAATTGGAGA+TGG | + | chr6_3:87443471-87443490 | None:intergenic | 35.0% |
| !!! | GGTTAGGGTTTTGTTTGATT+TGG | + | chr6_3:87443535-87443554 | None:intergenic | 35.0% |
| GGGGAAATTGAAGGAAATTA+GGG | + | chr6_3:87443556-87443575 | None:intergenic | 35.0% | |
| TGGGGAAATTGAAGGAAATT+AGG | + | chr6_3:87443557-87443576 | None:intergenic | 35.0% | |
| CATGAAATTGGGGAAATTGA+AGG | + | chr6_3:87443565-87443584 | None:intergenic | 35.0% | |
| ATGGTGGTTTCATGAAATTG+GGG | + | chr6_3:87443575-87443594 | None:intergenic | 35.0% | |
| AATTGGGGATGAAATTATGG+TGG | + | chr6_3:87443591-87443610 | None:intergenic | 35.0% | |
| AGGTTACGATGATCTTGAAT+TGG | - | chr6_3:87443721-87443740 | Msa0963090:CDS | 35.0% | |
| AAGAAAATGACACAGCTGAA+TGG | - | chr6_3:87443989-87444008 | Msa0963090:intron | 35.0% | |
| AACATAACATAGGGCATGTT+TGG | - | chr6_3:87444050-87444069 | Msa0963090:intron | 35.0% | |
| TTGATTAAGTACCTTCCAAG+TGG | - | chr6_3:87444435-87444454 | Msa0963090:CDS | 35.0% | |
| GTGTTTATGTTATGGGGAAA+AGG | - | chr6_3:87444510-87444529 | Msa0963090:intron | 35.0% | |
| GGGGAAAAGGAAATTAAACA+AGG | - | chr6_3:87444523-87444542 | Msa0963090:intron | 35.0% | |
| AATTAAACAAGGGTCCTGTT+TGG | - | chr6_3:87444534-87444553 | Msa0963090:intron | 35.0% | |
| TCTCCTAAACAGTCTCATAA+GGG | + | chr6_3:87444593-87444612 | None:intergenic | 35.0% | |
| TTCTCCTAAACAGTCTCATA+AGG | + | chr6_3:87444594-87444613 | None:intergenic | 35.0% | |
| ACAACACAACAATCTTGCAA+TGG | + | chr6_3:87445050-87445069 | None:intergenic | 35.0% | |
| ! | TGCAAGATTGTTGTGTTGTT+TGG | - | chr6_3:87445051-87445070 | Msa0963090:intron | 35.0% |
| !! | AAGATTGTTGTGTTGTTTGG+TGG | - | chr6_3:87445054-87445073 | Msa0963090:intron | 35.0% |
| ! | CATGCAACTGACTTAATAGT+AGG | - | chr6_3:87445086-87445105 | Msa0963090:intron | 35.0% |
| TATCAGATGTTTCAGTGACA+CGG | - | chr6_3:87445216-87445235 | Msa0963090:intron | 35.0% | |
| ! | TGCCAGAGATGATTTTTCTT+AGG | - | chr6_3:87445264-87445283 | Msa0963090:intron | 35.0% |
| CACCTAAGAAAAATCATCTC+TGG | + | chr6_3:87445269-87445288 | None:intergenic | 35.0% | |
| TTGCCTAAGTATCTATCAAG+TGG | - | chr6_3:87445474-87445493 | Msa0963090:intron | 35.0% | |
| TCTCCACTTGATAGATACTT+AGG | + | chr6_3:87445480-87445499 | None:intergenic | 35.0% | |
| ACACAACAATCTCACAATTG+GGG | + | chr6_3:87445624-87445643 | None:intergenic | 35.0% | |
| CAACACAACAATCTCACAAT+TGG | + | chr6_3:87445626-87445645 | None:intergenic | 35.0% | |
| AGGTCAATTACGCAAGTATT+AGG | - | chr6_3:87445690-87445709 | Msa0963090:CDS | 35.0% | |
| ! | GCCTTTTCTTTTTGAATGGA+TGG | - | chr6_3:87446026-87446045 | Msa0963090:intron | 35.0% |
| TTTGTCCGTAATACAACTCT+AGG | - | chr6_3:87446316-87446335 | Msa0963090:intron | 35.0% | |
| TCCAACCTAGAGTTGTATTA+CGG | + | chr6_3:87446324-87446343 | None:intergenic | 35.0% | |
| ! | TGGAGCTGGTAATACTTTTA+CGG | - | chr6_3:87446483-87446502 | Msa0963090:intron | 35.0% |
| ! | TTGTATGCTGATTGTACAGA+GGG | - | chr6_3:87446539-87446558 | Msa0963090:intron | 35.0% |
| GAGATGGAGAGAAAATGAAA+AGG | - | chr6_3:87446604-87446623 | Msa0963090:intron | 35.0% | |
| AGGGATGAAATAGATCTGAA+TGG | - | chr6_3:87446722-87446741 | Msa0963090:intron | 35.0% | |
| ATCTATGACGAAATCTGAAG+AGG | - | chr6_3:87446784-87446803 | Msa0963090:intron | 35.0% | |
| ATGAAGGGAAGAAGAGAAAA+AGG | - | chr6_3:87446839-87446858 | Msa0963090:intron | 35.0% | |
| TATACATAATCAGGCGTGTA+CGG | - | chr6_3:87447011-87447030 | Msa0963090:intron | 35.0% | |
| !! | GTTCAAATTTTTGGACCCAA+TGG | + | chr6_3:87447040-87447059 | None:intergenic | 35.0% |
| !! | CTTAAGCTTTGAATTAGGTC+TGG | + | chr6_3:87447168-87447187 | None:intergenic | 35.0% |
| CTGGGTTAAATGTCAAAATC+AGG | + | chr6_3:87447349-87447368 | None:intergenic | 35.0% | |
| !!! | GCAGATGAAGGTTTTTAGTT+TGG | + | chr6_3:87447408-87447427 | None:intergenic | 35.0% |
| AGACAAATAACAGCAGATGA+AGG | + | chr6_3:87447420-87447439 | None:intergenic | 35.0% | |
| GAACTGTTAACCTCATATTG+TGG | + | chr6_3:87447445-87447464 | None:intergenic | 35.0% | |
| TATGAATTCTCTTAAAGGGC+AGG | - | chr6_3:87447496-87447515 | Msa0963090:intron | 35.0% | |
| ATGAATTCTCTTAAAGGGCA+GGG | - | chr6_3:87447497-87447516 | Msa0963090:intron | 35.0% | |
| CATGTAATTGTGACAAGAGT+AGG | + | chr6_3:87447580-87447599 | None:intergenic | 35.0% | |
| CTACTCTTGTCACAATTACA+TGG | - | chr6_3:87447578-87447597 | Msa0963090:intron | 35.0% | |
| TCCTTCATTGAGACAAAGTT+GGG | - | chr6_3:87447640-87447659 | Msa0963090:intron | 35.0% | |
| ! | CAAGAGTACACTTACAACTT+TGG | + | chr6_3:87448058-87448077 | None:intergenic | 35.0% |
| TTTGTTCGTCCTTTATCTAG+AGG | - | chr6_3:87448256-87448275 | Msa0963090:intron | 35.0% | |
| AAATCCATGATGTGAATCCA+AGG | + | chr6_3:87448436-87448455 | None:intergenic | 35.0% | |
| !!! | TCTTGACTTGGGTAAGATTT+TGG | - | chr6_3:87448482-87448501 | Msa0963090:intron | 35.0% |
| !!! | GACCAATATTTTGATGCTGT+TGG | - | chr6_3:87448702-87448721 | Msa0963090:intron | 35.0% |
| ATGCTGTTGGATTCATATAC+TGG | - | chr6_3:87448715-87448734 | Msa0963090:intron | 35.0% | |
| ! | ATCTAGAGTCTTACTTCTGT+AGG | - | chr6_3:87448785-87448804 | Msa0963090:intron | 35.0% |
| ! | AGCTTAATGAAATGTTGGCT+TGG | - | chr6_3:87449064-87449083 | Msa0963090:intron | 35.0% |
| TCAGGAAACATGTTCTGTTA+CGG | - | chr6_3:87449234-87449253 | Msa0963090:intron | 35.0% | |
| TGAGAAATAGCAAGAAGGAA+TGG | + | chr6_3:87449308-87449327 | None:intergenic | 35.0% | |
| !! | TCCTTCTTGCTATTTCTCAT+AGG | - | chr6_3:87449309-87449328 | Msa0963090:intron | 35.0% |
| ACCTATGAGAAATAGCAAGA+AGG | + | chr6_3:87449313-87449332 | None:intergenic | 35.0% | |
| !! | TTCTTGCTATTTCTCATAGG+TGG | - | chr6_3:87449312-87449331 | Msa0963090:intron | 35.0% |
| GACTTCCTGCTTTCAAATAA+TGG | + | chr6_3:87449360-87449379 | None:intergenic | 35.0% | |
| ATCGAATGAACTTCCTTATG+TGG | - | chr6_3:87449462-87449481 | Msa0963090:intron | 35.0% | |
| CAAACTGATGTAGCAATTGA+AGG | + | chr6_3:87449516-87449535 | None:intergenic | 35.0% | |
| AGAGATGAAACTGCATCAAA+AGG | - | chr6_3:87449611-87449630 | Msa0963090:intron | 35.0% | |
| ATCAAAAGGATTTCTCCAGT+TGG | - | chr6_3:87449625-87449644 | Msa0963090:intron | 35.0% | |
| ! | GTTGTCTTTCCATTTTCATG+CGG | + | chr6_3:87449665-87449684 | None:intergenic | 35.0% |
| AGTGAAAATGTAGATGGATG+AGG | + | chr6_3:87449738-87449757 | None:intergenic | 35.0% | |
| GAAAGCAGTGAAAATGTAGA+TGG | + | chr6_3:87449744-87449763 | None:intergenic | 35.0% | |
| AAGCCTATTTATCGTCTTTC+AGG | - | chr6_3:87450250-87450269 | Msa0963090:five_prime_UTR | 35.0% | |
| AGCCTATTTATCGTCTTTCA+GGG | - | chr6_3:87450251-87450270 | Msa0963090:five_prime_UTR | 35.0% | |
| ! | AACTTTTCCTGAAGTTTCTC+AGG | - | chr6_3:87450382-87450401 | Msa0963090:five_prime_UTR | 35.0% |
| CGGAATTGGGGATGAAATTA+TGG | + | chr6_3:87443594-87443613 | None:intergenic | 40.0% | |
| ! | CTGGTTTGTGATCCTTGTTA+GGG | + | chr6_3:87443700-87443719 | None:intergenic | 40.0% |
| ! | TCTGGTTTGTGATCCTTGTT+AGG | + | chr6_3:87443701-87443720 | None:intergenic | 40.0% |
| AACAAGGATCACAAACCAGA+AGG | - | chr6_3:87443701-87443720 | Msa0963090:exon | 40.0% | |
| TCAAGATCATCGTAACCTTC+TGG | + | chr6_3:87443719-87443738 | None:intergenic | 40.0% | |
| TTTCTCCAACGAGCTGAAAA+TGG | + | chr6_3:87443759-87443778 | None:intergenic | 40.0% | |
| GAAAAAACGAGCATATTCGG+AGG | + | chr6_3:87443788-87443807 | None:intergenic | 40.0% | |
| CGCGAAAAAACGAGCATATT+CGG | + | chr6_3:87443791-87443810 | None:intergenic | 40.0% | |
| CTGAATGGAATCACATGTCT+CGG | - | chr6_3:87444004-87444023 | Msa0963090:intron | 40.0% | |
| AAGCCCTTATGAGACTGTTT+AGG | - | chr6_3:87444587-87444606 | Msa0963090:intron | 40.0% | |
| ACACAACAATCTTGCAATGG+AGG | + | chr6_3:87445047-87445066 | None:intergenic | 40.0% | |
| !! | TTGTTGTGTTGTTTGGTGGA+TGG | - | chr6_3:87445058-87445077 | Msa0963090:intron | 40.0% |
| !! | TGTTGTGTTGTTTGGTGGAT+GGG | - | chr6_3:87445059-87445078 | Msa0963090:intron | 40.0% |
| CTTAATAGTAGGCATGCAAC+TGG | - | chr6_3:87445097-87445116 | Msa0963090:intron | 40.0% | |
| AATTAGAGTGGCACAAACAC+TGG | - | chr6_3:87445135-87445154 | Msa0963090:intron | 40.0% | |
| ! | GCATTGATACTTCTGACTGA+AGG | + | chr6_3:87445247-87445266 | None:intergenic | 40.0% |
| ATCAAGTCCATTCAGTTCCA+TGG | + | chr6_3:87445665-87445684 | None:intergenic | 40.0% | |
| ! | CTTTGCGAAGCATCAAATGA+GGG | + | chr6_3:87445859-87445878 | None:intergenic | 40.0% |
| ! | ACTTTGCGAAGCATCAAATG+AGG | + | chr6_3:87445860-87445879 | None:intergenic | 40.0% |
| TCTGAGTCTGCAAATAGCAT+TGG | + | chr6_3:87446203-87446222 | None:intergenic | 40.0% | |
| TCCGTAATACAACTCTAGGT+TGG | - | chr6_3:87446320-87446339 | Msa0963090:intron | 40.0% | |
| TAGACAAGTAGGTTACAGCA+TGG | - | chr6_3:87446463-87446482 | Msa0963090:intron | 40.0% | |
| AGTCAGCATTCTGTATGAAC+CGG | + | chr6_3:87446514-87446533 | None:intergenic | 40.0% | |
| ! | GTTGTATGCTGATTGTACAG+AGG | - | chr6_3:87446538-87446557 | Msa0963090:intron | 40.0% |
| GTTCTGTGTGTTAATGGAGA+TGG | - | chr6_3:87446588-87446607 | Msa0963090:intron | 40.0% | |
| TTGATACAGATCTGAGCTAG+TGG | + | chr6_3:87446641-87446660 | None:intergenic | 40.0% | |
| AGCTAAAAACTACACGATGG+CGG | + | chr6_3:87446761-87446780 | None:intergenic | 40.0% | |
| CGAAGCTAAAAACTACACGA+TGG | + | chr6_3:87446764-87446783 | None:intergenic | 40.0% | |
| GGGACATTGAAAGAGATGAA+GGG | - | chr6_3:87446824-87446843 | Msa0963090:intron | 40.0% | |
| ATACATAATCAGGCGTGTAC+GGG | - | chr6_3:87447012-87447031 | Msa0963090:intron | 40.0% | |
| AACTGGAGAAAAATCGAGCT+GGG | + | chr6_3:87447112-87447131 | None:intergenic | 40.0% | |
| AAACTGGAGAAAAATCGAGC+TGG | + | chr6_3:87447113-87447132 | None:intergenic | 40.0% | |
| TCTTGCAAACAGTATCTACC+AGG | + | chr6_3:87447242-87447261 | None:intergenic | 40.0% | |
| ATACTGTTTGCAAGACAGTG+AGG | - | chr6_3:87447247-87447266 | Msa0963090:intron | 40.0% | |
| TACTGTTTGCAAGACAGTGA+GGG | - | chr6_3:87447248-87447267 | Msa0963090:intron | 40.0% | |
| TTTGCATTCGAGATTTCGCT+GGG | + | chr6_3:87447367-87447386 | None:intergenic | 40.0% | |
| ATTTGCATTCGAGATTTCGC+TGG | + | chr6_3:87447368-87447387 | None:intergenic | 40.0% | |
| TGTGTACAAAAGGACCTTGA+AGG | + | chr6_3:87447616-87447635 | None:intergenic | 40.0% | |
| ACTTTGTCTCAATGAAGGAC+TGG | + | chr6_3:87447639-87447658 | None:intergenic | 40.0% | |
| GTCCTTCATTGAGACAAAGT+TGG | - | chr6_3:87447639-87447658 | Msa0963090:intron | 40.0% | |
| TCCCAACTTTGTCTCAATGA+AGG | + | chr6_3:87447644-87447663 | None:intergenic | 40.0% | |
| ATTGAGACAAAGTTGGGACT+TGG | - | chr6_3:87447646-87447665 | Msa0963090:intron | 40.0% | |
| TTGAGACAAAGTTGGGACTT+GGG | - | chr6_3:87447647-87447666 | Msa0963090:intron | 40.0% | |
| TTGGAAATGAGACAGACACA+AGG | + | chr6_3:87447777-87447796 | None:intergenic | 40.0% | |
| GTGTACAACTCGTGATGTAA+AGG | + | chr6_3:87447830-87447849 | None:intergenic | 40.0% | |
| TGCAACAACTCACAAAACTC+TGG | + | chr6_3:87447977-87447996 | None:intergenic | 40.0% | |
| ACCAATGCTTGACAAGCTTA+TGG | - | chr6_3:87448228-87448247 | Msa0963090:intron | 40.0% | |
| TCCATAAGCTTGTCAAGCAT+TGG | + | chr6_3:87448232-87448251 | None:intergenic | 40.0% | |
| TCAGTCTTCTATCCAGAAGT+TGG | - | chr6_3:87448402-87448421 | Msa0963090:intron | 40.0% | |
| GAATATAGCTATGGCCCTAT+GGG | + | chr6_3:87448531-87448550 | None:intergenic | 40.0% | |
| TGAATATAGCTATGGCCCTA+TGG | + | chr6_3:87448532-87448551 | None:intergenic | 40.0% | |
| TAACCAGATGTGTACAGAAG+AGG | - | chr6_3:87448554-87448573 | Msa0963090:intron | 40.0% | |
| AACCAGATGTGTACAGAAGA+GGG | - | chr6_3:87448555-87448574 | Msa0963090:intron | 40.0% | |
| TACTTCTGTAGGTTTCCATG+TGG | - | chr6_3:87448796-87448815 | Msa0963090:intron | 40.0% | |
| AGTAACCCTGAATGTTTGCT+TGG | - | chr6_3:87448829-87448848 | Msa0963090:intron | 40.0% | |
| GTAACCCTGAATGTTTGCTT+GGG | - | chr6_3:87448830-87448849 | Msa0963090:intron | 40.0% | |
| CTTACCCAAGCAAACATTCA+GGG | + | chr6_3:87448837-87448856 | None:intergenic | 40.0% | |
| ! | TGCTTGGGTAAGGAATTTTC+TGG | - | chr6_3:87448845-87448864 | Msa0963090:intron | 40.0% |
| ! | TTGGGTAAGGAATTTTCTGG+AGG | - | chr6_3:87448848-87448867 | Msa0963090:intron | 40.0% |
| ! | TGGGTAAGGAATTTTCTGGA+GGG | - | chr6_3:87448849-87448868 | Msa0963090:intron | 40.0% |
| AAATACAGGAAGTCAACCAG+AGG | - | chr6_3:87448910-87448929 | Msa0963090:intron | 40.0% | |
| TCATGGAGATCGGAACAATT+TGG | - | chr6_3:87448937-87448956 | Msa0963090:intron | 40.0% | |
| CAGGAAACATGTTCTGTTAC+GGG | - | chr6_3:87449235-87449254 | Msa0963090:intron | 40.0% | |
| AGGAAACATGTTCTGTTACG+GGG | - | chr6_3:87449236-87449255 | Msa0963090:intron | 40.0% | |
| GGAGTCCATTATTTGAAAGC+AGG | - | chr6_3:87449352-87449371 | Msa0963090:intron | 40.0% | |
| TTTGATTATTCCCATGTCCC+TGG | - | chr6_3:87449380-87449399 | Msa0963090:intron | 40.0% | |
| CAGAAGGTGATTTCATCTGT+TGG | - | chr6_3:87449487-87449506 | Msa0963090:intron | 40.0% | |
| TGAATGCAACCGCATGAAAA+TGG | - | chr6_3:87449653-87449672 | Msa0963090:intron | 40.0% | |
| ! | ATTCCAGCACAAGTTTTCCA+AGG | + | chr6_3:87449867-87449886 | None:intergenic | 40.0% |
| TGGAAAACTTGTGCTGGAAT+TGG | - | chr6_3:87449867-87449886 | Msa0963090:intron | 40.0% | |
| CTGAAACGCCGTGAATAAAT+AGG | + | chr6_3:87450050-87450069 | None:intergenic | 40.0% | |
| ! | ATTACAGGAGTTGATCGCAA+AGG | - | chr6_3:87450095-87450114 | Msa0963090:CDS | 40.0% |
| GCCTATTTATCGTCTTTCAG+GGG | - | chr6_3:87450252-87450271 | Msa0963090:five_prime_UTR | 40.0% | |
| ACCCCTGAAAGACGATAAAT+AGG | + | chr6_3:87450256-87450275 | None:intergenic | 40.0% | |
| ! | TTTCAGGGGTGTATGTAAGT+TGG | - | chr6_3:87450266-87450285 | Msa0963090:five_prime_UTR | 40.0% |
| ATTCGCCATTGTTCCGTTTC+CGG | + | chr6_3:87443654-87443673 | None:intergenic | 45.0% | |
| CAATGGCGAATTCGAGAATG+AGG | - | chr6_3:87443663-87443682 | Msa0963090:three_prime_UTR | 45.0% | |
| GCTGAGATTGAACCCTAACA+AGG | - | chr6_3:87443685-87443704 | Msa0963090:three_prime_UTR | 45.0% | |
| ! | TCCTTCCATTTTCAGCTCGT+TGG | - | chr6_3:87443751-87443770 | Msa0963090:intron | 45.0% |
| TCCAACGAGCTGAAAATGGA+AGG | + | chr6_3:87443755-87443774 | None:intergenic | 45.0% | |
| !!! | TATGCTCGTTTTTTCGCGTG+AGG | - | chr6_3:87443793-87443812 | Msa0963090:intron | 45.0% |
| ACTCTGTGACGTTCACCATT+AGG | + | chr6_3:87443860-87443879 | None:intergenic | 45.0% | |
| ATGGTGAACGTCACAGAGTA+TGG | - | chr6_3:87443861-87443880 | Msa0963090:intron | 45.0% | |
| AAACATACTACGGGCCTCTT+TGG | + | chr6_3:87444410-87444429 | None:intergenic | 45.0% | |
| ACTATGTTACACGCTCCACT+TGG | + | chr6_3:87444453-87444472 | None:intergenic | 45.0% | |
| TGTTTATCCAAACAGGGCCA+AGG | - | chr6_3:87444776-87444795 | Msa0963090:intron | 45.0% | |
| AAGCCTTACCCAACTAAGTG+GGG | + | chr6_3:87444916-87444935 | None:intergenic | 45.0% | |
| CAAGCCTTACCCAACTAAGT+GGG | + | chr6_3:87444917-87444936 | None:intergenic | 45.0% | |
| GAGATTGTTGTGTTGTGTCG+TGG | - | chr6_3:87445631-87445650 | Msa0963090:CDS | 45.0% | |
| ATTGTTGTGTTGTGTCGTGG+AGG | - | chr6_3:87445634-87445653 | Msa0963090:CDS | 45.0% | |
| ! | GGAGTATCCATGGAACTGAA+TGG | - | chr6_3:87445655-87445674 | Msa0963090:CDS | 45.0% |
| ! | GAAGCATCAAATGAGGGTGT+TGG | + | chr6_3:87445853-87445872 | None:intergenic | 45.0% |
| !!! | TTTTTGAATGGATGGTGGGC+TGG | - | chr6_3:87446034-87446053 | Msa0963090:intron | 45.0% |
| !!! | TTTTGAATGGATGGTGGGCT+GGG | - | chr6_3:87446035-87446054 | Msa0963090:intron | 45.0% |
| TGACGAAATCTGAAGAGGTG+AGG | - | chr6_3:87446789-87446808 | Msa0963090:intron | 45.0% | |
| CGGGACATTGAAAGAGATGA+AGG | - | chr6_3:87446823-87446842 | Msa0963090:intron | 45.0% | |
| ! | ACGGGTGCGGTTCAAATTTT+TGG | + | chr6_3:87447049-87447068 | None:intergenic | 45.0% |
| !! | ATTACAGGTTGATACGGGTG+CGG | + | chr6_3:87447062-87447081 | None:intergenic | 45.0% |
| GGACAACGGGTGAAAATTAC+AGG | + | chr6_3:87447077-87447096 | None:intergenic | 45.0% | |
| !!! | TTCTCCAGTTTTTTGCGGGT+TGG | - | chr6_3:87447122-87447141 | Msa0963090:intron | 45.0% |
| !!! | TCTCCAGTTTTTTGCGGGTT+GGG | - | chr6_3:87447123-87447142 | Msa0963090:intron | 45.0% |
| CCAGGTTCGTCATTAATGTC+AGG | + | chr6_3:87447224-87447243 | None:intergenic | 45.0% | |
| CCTGACATTAATGACGAACC+TGG | - | chr6_3:87447221-87447240 | Msa0963090:intron | 45.0% | |
| AAAAGGACCTTGAAGGAGAG+GGG | + | chr6_3:87447609-87447628 | None:intergenic | 45.0% | |
| CAAAAGGACCTTGAAGGAGA+GGG | + | chr6_3:87447610-87447629 | None:intergenic | 45.0% | |
| ACAAAAGGACCTTGAAGGAG+AGG | + | chr6_3:87447611-87447630 | None:intergenic | 45.0% | |
| ! | GAAGGACTGGTGTGTACAAA+AGG | + | chr6_3:87447626-87447645 | None:intergenic | 45.0% |
| TTGTGAGTTGTTGCAAGCTG+AGG | - | chr6_3:87447982-87448001 | Msa0963090:intron | 45.0% | |
| GGGTGGCTGAAGCAAAATTT+CGG | - | chr6_3:87448146-87448165 | Msa0963090:intron | 45.0% | |
| ! | GGTGCTGTACTTGATGACTT+TGG | - | chr6_3:87448199-87448218 | Msa0963090:intron | 45.0% |
| !! | GCTTGTCAAGCATTGGTTCA+AGG | + | chr6_3:87448225-87448244 | None:intergenic | 45.0% |
| GTCTTCTATCCAGAAGTTGG+AGG | - | chr6_3:87448405-87448424 | Msa0963090:intron | 45.0% | |
| GCAACCTTGGATTCACATCA+TGG | - | chr6_3:87448429-87448448 | Msa0963090:intron | 45.0% | |
| AGGTTTCCATGTGGATGACT+CGG | - | chr6_3:87448805-87448824 | Msa0963090:intron | 45.0% | |
| TTACTTCCGAGTCATCCACA+TGG | + | chr6_3:87448814-87448833 | None:intergenic | 45.0% | |
| CCTTACCCAAGCAAACATTC+AGG | + | chr6_3:87448838-87448857 | None:intergenic | 45.0% | |
| CCTGAATGTTTGCTTGGGTA+AGG | - | chr6_3:87448835-87448854 | Msa0963090:intron | 45.0% | |
| !! | GGGTAAGGAATTTTCTGGAG+GGG | - | chr6_3:87448850-87448869 | Msa0963090:intron | 45.0% |
| AGTCAACCAGAGGTAAGTCA+TGG | - | chr6_3:87448920-87448939 | Msa0963090:intron | 45.0% | |
| CAGAGGTAAGTCATGGAGAT+CGG | - | chr6_3:87448927-87448946 | Msa0963090:intron | 45.0% | |
| ! | GCATGATTTTACAAGGGCCT+GGG | + | chr6_3:87449102-87449121 | None:intergenic | 45.0% |
| ! | TGCATGATTTTACAAGGGCC+TGG | + | chr6_3:87449103-87449122 | None:intergenic | 45.0% |
| CAACTTGCAAAACACACCTG+AGG | + | chr6_3:87449142-87449161 | None:intergenic | 45.0% | |
| ! | CTCAGGTGTGTTTTGCAAGT+TGG | - | chr6_3:87449140-87449159 | Msa0963090:intron | 45.0% |
| GGAAACATGTTCTGTTACGG+GGG | - | chr6_3:87449237-87449256 | Msa0963090:intron | 45.0% | |
| ATTATTCCCATGTCCCTGGA+CGG | - | chr6_3:87449384-87449403 | Msa0963090:intron | 45.0% | |
| ACTTCCTTATGTGGTGCAGA+AGG | - | chr6_3:87449471-87449490 | Msa0963090:intron | 45.0% | |
| ATCACCTTCTGCACCACATA+AGG | + | chr6_3:87449478-87449497 | None:intergenic | 45.0% | |
| ! | AAGGATTTCTCCAGTTGGTG+TGG | - | chr6_3:87449630-87449649 | Msa0963090:intron | 45.0% |
| GAACCTTGGAAAACTTGTGC+TGG | - | chr6_3:87449861-87449880 | Msa0963090:intron | 45.0% | |
| ! | GCGTAGTTTCTTTTGCTCAG+TGG | - | chr6_3:87450132-87450151 | Msa0963090:CDS | 45.0% |
| CGATGAACCTGAGAAACTTC+AGG | + | chr6_3:87450392-87450411 | None:intergenic | 45.0% | |
| !!! | ATCTTTATTTTTTAAATTTT+GGG | - | chr6_3:87445373-87445392 | Msa0963090:CDS | 5.0% |
| !! | ATTAAATTCTTAAATAAAAA+AGG | - | chr6_3:87447295-87447314 | Msa0963090:intron | 5.0% |
| !!! | TGGGGGCATTTTCGGAATTG+GGG | + | chr6_3:87443606-87443625 | None:intergenic | 50.0% |
| !!! | GTGGGGGCATTTTCGGAATT+GGG | + | chr6_3:87443607-87443626 | None:intergenic | 50.0% |
| !!! | TGTGGGGGCATTTTCGGAAT+TGG | + | chr6_3:87443608-87443627 | None:intergenic | 50.0% |
| ATTCCGAAAATGCCCCCACA+CGG | - | chr6_3:87443608-87443627 | Msa0963090:three_prime_UTR | 50.0% | |
| CATTGTTCCGTTTCCGGTTG+CGG | + | chr6_3:87443648-87443667 | None:intergenic | 50.0% | |
| CGACACTGACACGTTGATAC+CGG | - | chr6_3:87443957-87443976 | Msa0963090:intron | 50.0% | |
| !! | ACATGTCTCGGTGTCGACAA+AGG | - | chr6_3:87444016-87444035 | Msa0963090:intron | 50.0% |
| TGTTACACGCTCCACTTGGA+AGG | + | chr6_3:87444449-87444468 | None:intergenic | 50.0% | |
| ACTAAGTGGGGTCAGCTACA+TGG | + | chr6_3:87444904-87444923 | None:intergenic | 50.0% | |
| TGTAGCTGACCCCACTTAGT+TGG | - | chr6_3:87444904-87444923 | Msa0963090:intron | 50.0% | |
| GTAGCTGACCCCACTTAGTT+GGG | - | chr6_3:87444905-87444924 | Msa0963090:intron | 50.0% | |
| TGACCCCACTTAGTTGGGTA+AGG | - | chr6_3:87444910-87444929 | Msa0963090:intron | 50.0% | |
| CCAAGCCTTACCCAACTAAG+TGG | + | chr6_3:87444918-87444937 | None:intergenic | 50.0% | |
| CCACTTAGTTGGGTAAGGCT+TGG | - | chr6_3:87444915-87444934 | Msa0963090:intron | 50.0% | |
| ATTGGATGTTGACGCGCGTT+TGG | - | chr6_3:87445921-87445940 | Msa0963090:CDS | 50.0% | |
| !! | TTTGAATGGATGGTGGGCTG+GGG | - | chr6_3:87446036-87446055 | Msa0963090:intron | 50.0% |
| AGTAGGTTACAGCATGGAGC+TGG | - | chr6_3:87446469-87446488 | Msa0963090:intron | 50.0% | |
| GCTGATTGTACAGAGGGCTA+AGG | - | chr6_3:87446545-87446564 | Msa0963090:intron | 50.0% | |
| TCTGAAGAGGTGAGGAGATG+AGG | - | chr6_3:87446797-87446816 | Msa0963090:intron | 50.0% | |
| TGGAGAAAAATCGAGCTGGG+CGG | + | chr6_3:87447109-87447128 | None:intergenic | 50.0% | |
| TTGCAAGACAGTGAGGGATG+AGG | - | chr6_3:87447254-87447273 | Msa0963090:intron | 50.0% | |
| TGCAAGACAGTGAGGGATGA+GGG | - | chr6_3:87447255-87447274 | Msa0963090:intron | 50.0% | |
| TGAGACAGACACAAGGACAG+CGG | + | chr6_3:87447770-87447789 | None:intergenic | 50.0% | |
| GACGGCACAAAGAATGCAGT+AGG | + | chr6_3:87447860-87447879 | None:intergenic | 50.0% | |
| AAGGTTGCTCCTCCAACTTC+TGG | + | chr6_3:87448417-87448436 | None:intergenic | 50.0% | |
| AGAAGTTGGAGGAGCAACCT+TGG | - | chr6_3:87448416-87448435 | Msa0963090:intron | 50.0% | |
| AGCCCTCTTCTGTACACATC+TGG | + | chr6_3:87448560-87448579 | None:intergenic | 50.0% | |
| !!! | GGAGGGGAGTTGTTTTTTCG+AGG | - | chr6_3:87448866-87448885 | Msa0963090:intron | 50.0% |
| CGATCTCCATGACTTACCTC+TGG | + | chr6_3:87448929-87448948 | None:intergenic | 50.0% | |
| ! | CTTGGCTTGATTACCAACCC+AGG | - | chr6_3:87449082-87449101 | Msa0963090:intron | 50.0% |
| ! | GATTTTACAAGGGCCTGGGT+TGG | + | chr6_3:87449098-87449117 | None:intergenic | 50.0% |
| TTATTCCCATGTCCCTGGAC+GGG | - | chr6_3:87449385-87449404 | Msa0963090:intron | 50.0% | |
| TTGTCGCTCTAGCACCATGA+CGG | + | chr6_3:87449433-87449452 | None:intergenic | 50.0% | |
| GTGCTAGAGCGACAACATCT+GGG | - | chr6_3:87449438-87449457 | Msa0963090:intron | 50.0% | |
| GTTGCATTCACCACACCAAC+TGG | + | chr6_3:87449643-87449662 | None:intergenic | 50.0% | |
| CAATCTGGTAGCAGCACATG+TGG | + | chr6_3:87449691-87449710 | None:intergenic | 50.0% | |
| ! | CACATGTGCTGCTACCAGAT+TGG | - | chr6_3:87449689-87449708 | Msa0963090:intron | 50.0% |
| ! | CAGGAGTTGATCGCAAAGGA+AGG | - | chr6_3:87450099-87450118 | Msa0963090:CDS | 50.0% |
| CGCAAAGGAAGGTGAATCCA+CGG | - | chr6_3:87450110-87450129 | Msa0963090:CDS | 50.0% | |
| GAGCAAAAGAAACTACGCCG+TGG | + | chr6_3:87450130-87450149 | None:intergenic | 50.0% | |
| CGCAACCGGAAACGGAACAA+TGG | - | chr6_3:87443646-87443665 | Msa0963090:three_prime_UTR | 55.0% | |
| CCTTTCACCTTGGCCCTGTT+TGG | + | chr6_3:87444786-87444805 | None:intergenic | 55.0% | |
| CCAAACAGGGCCAAGGTGAA+AGG | - | chr6_3:87444783-87444802 | Msa0963090:intron | 55.0% | |
| !! | GTGTCGTGGAGGAGTATCCA+TGG | - | chr6_3:87445645-87445664 | Msa0963090:CDS | 55.0% |
| GAGGTGAGGAGATGAGGAGT+CGG | - | chr6_3:87446803-87446822 | Msa0963090:intron | 55.0% | |
| AGGTGAGGAGATGAGGAGTC+GGG | - | chr6_3:87446804-87446823 | Msa0963090:intron | 55.0% | |
| AGGCGTGTACGGGTACCATT+GGG | - | chr6_3:87447022-87447041 | Msa0963090:intron | 55.0% | |
| GGAGAAAAATCGAGCTGGGC+GGG | + | chr6_3:87447108-87447127 | None:intergenic | 55.0% | |
| !!! | CAGTTTTTTGCGGGTTGGGC+CGG | - | chr6_3:87447127-87447146 | Msa0963090:intron | 55.0% |
| CTGGACAAGAACCCGTGATC+CGG | + | chr6_3:87447149-87447168 | None:intergenic | 55.0% | |
| GGGTTATCCCCTCTCCTTCA+AGG | - | chr6_3:87447599-87447618 | Msa0963090:CDS | 55.0% | |
| GGTGCTAGAGCGACAACATC+TGG | - | chr6_3:87449437-87449456 | Msa0963090:intron | 55.0% | |
| !!! | CCACCGTGTGGGGGCATTTT+CGG | + | chr6_3:87443614-87443633 | None:intergenic | 60.0% |
| TGGTGGAATCGCCACCGTGT+GGG | + | chr6_3:87443625-87443644 | None:intergenic | 60.0% | |
| TCCACCACCGCAACCGGAAA+CGG | - | chr6_3:87443638-87443657 | Msa0963090:three_prime_UTR | 60.0% | |
| TGTTCCGTTTCCGGTTGCGG+TGG | + | chr6_3:87443645-87443664 | None:intergenic | 60.0% | |
| CAGGCGTGTACGGGTACCAT+TGG | - | chr6_3:87447021-87447040 | Msa0963090:intron | 60.0% | |
| !! | GCGGGTTTTAGCGGGACAAC+GGG | + | chr6_3:87447090-87447109 | None:intergenic | 60.0% |
| !! | GGCGGGTTTTAGCGGGACAA+CGG | + | chr6_3:87447091-87447110 | None:intergenic | 60.0% |
| !! | TCGAGCTGGGCGGGTTTTAG+CGG | + | chr6_3:87447099-87447118 | None:intergenic | 60.0% |
| CGGCCCAACCCGCAAAAAAC+TGG | + | chr6_3:87447129-87447148 | None:intergenic | 60.0% | |
| !! | CATGACGGTGTCGACCACGA+TGG | + | chr6_3:87449418-87449437 | None:intergenic | 60.0% |
| CATCGTGGTCGACACCGTCA+TGG | - | chr6_3:87449416-87449435 | Msa0963090:intron | 60.0% | |
| CCGAAAATGCCCCCACACGG+TGG | - | chr6_3:87443611-87443630 | Msa0963090:three_prime_UTR | 65.0% | |
| GTGGAATCGCCACCGTGTGG+GGG | + | chr6_3:87443623-87443642 | None:intergenic | 65.0% | |
| GGTGGAATCGCCACCGTGTG+GGG | + | chr6_3:87443624-87443643 | None:intergenic | 65.0% | |
| ! | GTGGTGGAATCGCCACCGTG+TGG | + | chr6_3:87443626-87443645 | None:intergenic | 65.0% |
| GGCGATTCCACCACCGCAAC+CGG | - | chr6_3:87443632-87443651 | Msa0963090:three_prime_UTR | 65.0% | |
| TCCGTTTCCGGTTGCGGTGG+TGG | + | chr6_3:87443642-87443661 | None:intergenic | 65.0% | |
| !! | CGAGCTGGGCGGGTTTTAGC+GGG | + | chr6_3:87447098-87447117 | None:intergenic | 65.0% |
| !! | TTGCGGGTTGGGCCGGATCA+CGG | - | chr6_3:87447134-87447153 | Msa0963090:intron | 65.0% |
| CACAGCCCGTCCAGGGACAT+GGG | + | chr6_3:87449393-87449412 | None:intergenic | 65.0% | |
| GATGGAGCACAGCCCGTCCA+GGG | + | chr6_3:87449400-87449419 | None:intergenic | 65.0% | |
| !! | TGCGGGTTGGGCCGGATCAC+GGG | - | chr6_3:87447135-87447154 | Msa0963090:intron | 70.0% |
| GCACAGCCCGTCCAGGGACA+TGG | + | chr6_3:87449394-87449413 | None:intergenic | 70.0% | |
| CGATGGAGCACAGCCCGTCC+AGG | + | chr6_3:87449401-87449420 | None:intergenic | 70.0% | |
| !! | GGACGGGCTGTGCTCCATCG+TGG | - | chr6_3:87449401-87449420 | Msa0963090:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 87443403 | 87450446 | 87443403 | ID=Msa0963090;Name=Msa0963090 |
| chr6_3 | mRNA | 87443403 | 87450446 | 87443403 | ID=Msa0963090-mRNA-1;Parent=Msa0963090;Name=Msa0963090-mRNA-1;_AED=0.08;_eAED=0.08;_QI=214|1|1|1|1|1|9|309|371 |
| chr6_3 | exon | 87443403 | 87443747 | 87443403 | ID=Msa0963090-mRNA-1:exon:15846;Parent=Msa0963090-mRNA-1 |
| chr6_3 | exon | 87444139 | 87444250 | 87444139 | ID=Msa0963090-mRNA-1:exon:15845;Parent=Msa0963090-mRNA-1 |
| chr6_3 | exon | 87444357 | 87444475 | 87444357 | ID=Msa0963090-mRNA-1:exon:15844;Parent=Msa0963090-mRNA-1 |
| chr6_3 | exon | 87444918 | 87445042 | 87444918 | ID=Msa0963090-mRNA-1:exon:15843;Parent=Msa0963090-mRNA-1 |
| chr6_3 | exon | 87445357 | 87445443 | 87445357 | ID=Msa0963090-mRNA-1:exon:15842;Parent=Msa0963090-mRNA-1 |
| chr6_3 | exon | 87445572 | 87445722 | 87445572 | ID=Msa0963090-mRNA-1:exon:15841;Parent=Msa0963090-mRNA-1 |
| chr6_3 | exon | 87445846 | 87446022 | 87445846 | ID=Msa0963090-mRNA-1:exon:15840;Parent=Msa0963090-mRNA-1 |
| chr6_3 | exon | 87447586 | 87447633 | 87447586 | ID=Msa0963090-mRNA-1:exon:15839;Parent=Msa0963090-mRNA-1 |
| chr6_3 | exon | 87449972 | 87450446 | 87449972 | ID=Msa0963090-mRNA-1:exon:15838;Parent=Msa0963090-mRNA-1 |
| chr6_3 | five_prime_UTR | 87450233 | 87450446 | 87450233 | ID=Msa0963090-mRNA-1:five_prime_utr;Parent=Msa0963090-mRNA-1 |
| chr6_3 | CDS | 87449972 | 87450232 | 87449972 | ID=Msa0963090-mRNA-1:cds;Parent=Msa0963090-mRNA-1 |
| chr6_3 | CDS | 87447586 | 87447633 | 87447586 | ID=Msa0963090-mRNA-1:cds;Parent=Msa0963090-mRNA-1 |
| chr6_3 | CDS | 87445846 | 87446022 | 87445846 | ID=Msa0963090-mRNA-1:cds;Parent=Msa0963090-mRNA-1 |
| chr6_3 | CDS | 87445572 | 87445722 | 87445572 | ID=Msa0963090-mRNA-1:cds;Parent=Msa0963090-mRNA-1 |
| chr6_3 | CDS | 87445357 | 87445443 | 87445357 | ID=Msa0963090-mRNA-1:cds;Parent=Msa0963090-mRNA-1 |
| chr6_3 | CDS | 87444918 | 87445042 | 87444918 | ID=Msa0963090-mRNA-1:cds;Parent=Msa0963090-mRNA-1 |
| chr6_3 | CDS | 87444357 | 87444475 | 87444357 | ID=Msa0963090-mRNA-1:cds;Parent=Msa0963090-mRNA-1 |
| chr6_3 | CDS | 87444139 | 87444250 | 87444139 | ID=Msa0963090-mRNA-1:cds;Parent=Msa0963090-mRNA-1 |
| chr6_3 | CDS | 87443712 | 87443747 | 87443712 | ID=Msa0963090-mRNA-1:cds;Parent=Msa0963090-mRNA-1 |
| chr6_3 | three_prime_UTR | 87443403 | 87443711 | 87443403 | ID=Msa0963090-mRNA-1:three_prime_utr;Parent=Msa0963090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
