AlfalfaGEDB | Msa1293480

M. sativa cultivar zhongmu-4 / Msa1293480

KEGG: -
GO: -
PFAM: PF16719.8

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1293480	sp\|Q8RWJ7\|SHH2_ARATH	69.637	303	76	5	1	287	1	303	3.92e-151	433

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1293480	G7LDQ2	99.467	375	2	0	1	375	1	375	0.0	780

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TFs/TRs:

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Gene ID	Type	Classification
Msa1293480	TF	HB-other

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005000	Msa1293480	0.830912	2.248371e-55	-8.615850e-47
Msa0032320	Msa1293480	-0.825652	4.170702e-54	-8.615850e-47
Msa0053050	Msa1293480	0.822195	2.697491e-53	-8.615850e-47
Msa0098390	Msa1293480	0.830623	2.645748e-55	-8.615850e-47
Msa0140510	Msa1293480	0.832439	9.445736e-56	-8.615850e-47
Msa0140520	Msa1293480	0.850068	2.156275e-60	-8.615850e-47
Msa0212750	Msa1293480	0.814017	1.908185e-51	-8.615850e-47
Msa0295000	Msa1293480	0.817281	3.578074e-52	-8.615850e-47
Msa0308200	Msa1293480	-0.808869	2.505893e-50	-8.615850e-47
Msa0436280	Msa1293480	0.800287	1.547192e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1293480	MtrunA17_Chr8g0360221	99.467	375	2	0	1	375	1	375	0.0	780
Msa1293480	MtrunA17_Chr3g0140441	40.076	262	125	4	1	260	1	232	4.62e-65	206
Msa1293480	MtrunA17_Chr8g0340501	38.760	258	147	3	1	258	1	247	4.50e-50	169

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1293480	AT3G18380.1	69.637	303	76	5	1	287	1	303	3.98e-152	433
Msa1293480	AT3G18380.2	69.408	304	76	6	1	287	1	304	2.83e-150	428
Msa1293480	AT3G18380.3	69.435	301	78	6	1	287	1	301	7.43e-150	427
Msa1293480	AT1G15215.2	43.725	247	135	2	14	259	14	257	1.29e-63	204
Msa1293480	AT1G15215.4	42.979	235	128	3	14	246	14	244	7.84e-57	187
Msa1293480	AT1G15215.3	42.979	235	128	3	14	246	14	244	1.10e-56	186
Msa1293480	AT1G15215.1	35.256	156	92	4	14	167	14	162	7.04e-19	83.6

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Find 106 sgRNAs with CRISPR-Local

Find 669 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAAGCGATATGCTATA+AGG	0.259455	8_3:+50662175	Msa1293480:CDS
AAACAAAGTATGAGATCACC+AGG	0.544394	8_3:-50665645	None:intergenic
AAATAAGCGATATGCTATAA+GGG	0.442347	8_3:+50662176	Msa1293480:CDS
AACAAAGTATGAGATCACCA+GGG	0.773298	8_3:-50665644	None:intergenic
AACATTCTACCTGAAGCTGA+AGG	0.631227	8_3:-50662306	None:intergenic
AACTATTTAGAAGTTTGAAA+AGG	0.473981	8_3:-50667507	None:intergenic
AACTTGAATATATTTGTTTA+AGG	0.167227	8_3:+50667433	Msa1293480:exon
AAGCACTTGCAGACAAGTTT+AGG	0.288349	8_3:+50661916	Msa1293480:CDS
AATCTGGAAGAGATGGAGCA+TGG	0.658527	8_3:+50664880	Msa1293480:CDS
AATGATTCCAGTGAATGCGG+CGG	0.736741	8_3:-50667358	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAGTGGAATTTAAATACCT+CGG	-	chr8_3:50658892-50658911	None:intergenic	30.0%
AAAAAGAAGAAGAAGAAGAG+TGG	-	chr8_3:50658908-50658927	None:intergenic	30.0%
CATAGTAAAAATCATGCAGA+GGG	-	chr8_3:50658942-50658961	None:intergenic	30.0%
TCATAGTAAAAATCATGCAG+AGG	-	chr8_3:50658943-50658962	None:intergenic	30.0%
CCTCATTATTCAAAATTCCA+TGG	-	chr8_3:50659197-50659216	None:intergenic	30.0%
AGAAAGAGATGATCATATGT+GGG	+	chr8_3:50659320-50659339	Msa1293480:intron	30.0%
TGGATAAGTGTTTAAAAGTG+GGG	-	chr8_3:50659386-50659405	None:intergenic	30.0%
CATGGATAAGTGTTTAAAAG+TGG	-	chr8_3:50659388-50659407	None:intergenic	30.0%
TACTATGGTACATTCAAGAT+TGG	-	chr8_3:50659578-50659597	None:intergenic	30.0%
AAAGACAAATGAAATTCGAC+TGG	+	chr8_3:50659617-50659636	Msa1293480:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	50658707	50667675	50658707	ID=Msa1293480;Name=Msa1293480
chr8_3	mRNA	50658707	50667675	50658707	ID=Msa1293480-mRNA-1;Parent=Msa1293480;Name=Msa1293480-mRNA-1;_AED=0.06;_eAED=0.06;_QI=133\|1\|1\|1\|0.87\|1\|9\|241\|375
chr8_3	exon	50658707	50658893	50658707	ID=Msa1293480-mRNA-1:exon:14094;Parent=Msa1293480-mRNA-1
chr8_3	exon	50661852	50661937	50661852	ID=Msa1293480-mRNA-1:exon:14095;Parent=Msa1293480-mRNA-1
chr8_3	exon	50662040	50662085	50662040	ID=Msa1293480-mRNA-1:exon:14096;Parent=Msa1293480-mRNA-1
chr8_3	exon	50662159	50662318	50662159	ID=Msa1293480-mRNA-1:exon:14097;Parent=Msa1293480-mRNA-1
chr8_3	exon	50664826	50664901	50664826	ID=Msa1293480-mRNA-1:exon:14098;Parent=Msa1293480-mRNA-1
chr8_3	exon	50664994	50665045	50664994	ID=Msa1293480-mRNA-1:exon:14099;Parent=Msa1293480-mRNA-1
chr8_3	exon	50665528	50665671	50665528	ID=Msa1293480-mRNA-1:exon:14100;Parent=Msa1293480-mRNA-1
chr8_3	exon	50665793	50665912	50665793	ID=Msa1293480-mRNA-1:exon:14101;Parent=Msa1293480-mRNA-1
chr8_3	exon	50667045	50667675	50667045	ID=Msa1293480-mRNA-1:exon:14102;Parent=Msa1293480-mRNA-1
chr8_3	five_prime_UTR	50658707	50658839	50658707	ID=Msa1293480-mRNA-1:five_prime_utr;Parent=Msa1293480-mRNA-1
chr8_3	CDS	50658840	50658893	50658840	ID=Msa1293480-mRNA-1:cds;Parent=Msa1293480-mRNA-1
chr8_3	CDS	50661852	50661937	50661852	ID=Msa1293480-mRNA-1:cds;Parent=Msa1293480-mRNA-1
chr8_3	CDS	50662040	50662085	50662040	ID=Msa1293480-mRNA-1:cds;Parent=Msa1293480-mRNA-1
chr8_3	CDS	50662159	50662318	50662159	ID=Msa1293480-mRNA-1:cds;Parent=Msa1293480-mRNA-1
chr8_3	CDS	50664826	50664901	50664826	ID=Msa1293480-mRNA-1:cds;Parent=Msa1293480-mRNA-1
chr8_3	CDS	50664994	50665045	50664994	ID=Msa1293480-mRNA-1:cds;Parent=Msa1293480-mRNA-1
chr8_3	CDS	50665528	50665671	50665528	ID=Msa1293480-mRNA-1:cds;Parent=Msa1293480-mRNA-1
chr8_3	CDS	50665793	50665912	50665793	ID=Msa1293480-mRNA-1:cds;Parent=Msa1293480-mRNA-1
chr8_3	CDS	50667045	50667434	50667045	ID=Msa1293480-mRNA-1:cds;Parent=Msa1293480-mRNA-1
chr8_3	three_prime_UTR	50667435	50667675	50667435	ID=Msa1293480-mRNA-1:three_prime_utr;Parent=Msa1293480-mRNA-1

Gene Sequence

>Msa1293480

ATGGGTCGCCCACCCAGTAACGGAGGCCCCGCCTTCCGTTTCACTCAGCCCGAGGTAACAGAAATGGAAGCTATTCTATCAGAACACAACAATGCAATGCCAGCACGAGATGTTCTTCAAGCACTTGCAGACAAGTTTAGTGAATCACCTGACCGTAAAGGCAAGATCACAGTACAGATGAAACAGGTATGGAATTGGTTTCAAAATAAGCGATATGCTATAAGGGCTAAATCTAGTAAGACTCCTGCAAAGTTAAATATCACGCCCATGCCTCGGACTGATTTGACCCCAGGAAGGATAATGACTCAACCAACAGCTTCTCCTATTCCCGCTCCTTCAGCTTCAGTTCAAACAACAGCAAAGGCGGCTCCTGAAAATTCAGTTATGGAATTTGAAGCTAAATCTGGAAGAGATGGAGCATGGTATGATGTGGCTACCTTTCTATCATACAGACATTTGGAGAGCAGTGATCCGGAAGTGCTAGTGCGTTTTGCTGGTTTTGGATCCGAGGAAGATGAGTGGATTAATGTGCGAAAAAATGTCAGGCCGCGCTCTCTGCCATGTGAATCATCAGAATGTGTCGCAGTGCTCCCTGGTGATCTCATACTTTGTTTTCAGGAGGGTAAAGAGCAAGCCCTTTACTTTGATGCCCATGTCCTTGATGCTCAAAGACGGAGGCATGATGTAAGAGGTTGTCGCTGTAGATTTTTGGTTCGCTATGATCACGATCAATCTGAGGAAATCGTGCCGCTTAGGAAGATTTGTCGGAGACCTGAAACTGATTACAGATTACATCAACTTCATGCTGTGAATGATGCAGCACCCACGGATCAGCAGAAGATTGCGTTGGATCATCCAGCAAATGTTCATGGTGCGAGGGTTACTAATCCTTCTGAAATGGTGCAAAAGCAGCAGCAGATTGCAAATATTCATATAGTAACACCTGTTTTGCAAACAAATGTTTCTATACCACCACAAAGTATGAATGTGGATCCAACGAAAGCTGAAACAAAAGCTGATGTTCAAGCTGGAAATTCTGTCACTCCAAGCACCGCCGCATTCACTGGAATCATTGCCACTAGCAGTGTTCCTGAAGTCTCTACTCAAAACCTGGCCGAAGGGAAGTAA

Protein sequence

>Msa1293480

MGRPPSNGGPAFRFTQPEVTEMEAILSEHNNAMPARDVLQALADKFSESPDRKGKITVQMKQVWNWFQNKRYAIRAKSSKTPAKLNITPMPRTDLTPGRIMTQPTASPIPAPSASVQTTAKAAPENSVMEFEAKSGRDGAWYDVATFLSYRHLESSDPEVLVRFAGFGSEEDEWINVRKNVRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKICRRPETDYRLHQLHAVNDAAPTDQQKIALDHPANVHGARVTNPSEMVQKQQQIANIHIVTPVLQTNVSIPPQSMNVDPTKAETKADVQAGNSVTPSTAAFTGIIATSSVPEVSTQNLAEGK*