AlfalfaGEDB | Msa1371090

M. sativa cultivar zhongmu-4 / Msa1371090

KEGG: -
GO: GO:0005575 GO:0016020
PFAM: PF07851.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1371090	XP_003592828.1	92.417	211	0	1	1	195	151	361	1.42e-135	394

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1371090	sp\|Q54IK2\|TM120_DICDI	32.386	176	76	5	16	161	178	340	7.78e-20	89.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1371090	G7IAZ3	92.417	211	0	1	1	195	151	361	6.77e-136	394

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa1371090	-0.804078	2.567592e-49	-8.615850e-47
Msa0004060	Msa1371090	0.817419	3.330157e-52	-8.615850e-47
Msa0005270	Msa1371090	0.815553	8.714428e-52	-8.615850e-47
Msa0006880	Msa1371090	0.865060	7.766860e-65	-8.615850e-47
Msa0015140	Msa1371090	0.837806	4.182670e-57	-8.615850e-47
Msa0015460	Msa1371090	0.808354	3.227063e-50	-8.615850e-47
Msa0026870	Msa1371090	0.800439	1.440499e-48	-8.615850e-47
Msa0029260	Msa1371090	0.818628	1.774918e-52	-8.615850e-47
Msa0030300	Msa1371090	0.806455	8.156335e-50	-8.615850e-47
Msa0036370	Msa1371090	0.820417	6.937180e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1371090	MtrunA17_Chr1g0213491	92.417	211	0	1	1	195	151	361	1.30e-139	394

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1371090	AT4G10430.1	75.829	211	35	1	1	195	137	347	6.34e-115	331
Msa1371090	AT4G10430.3	75.829	211	35	1	1	195	137	347	6.34e-115	331
Msa1371090	AT1G33230.1	75.598	209	35	1	2	194	139	347	6.79e-114	328
Msa1371090	AT1G33230.2	75.598	209	35	1	2	194	146	354	1.96e-113	327
Msa1371090	AT4G10430.4	88.372	129	15	0	1	129	137	265	2.12e-83	249
Msa1371090	AT4G10430.6	88.372	129	15	0	1	129	137	265	2.12e-83	249
Msa1371090	AT4G10430.9	88.372	129	15	0	1	129	137	265	2.12e-83	249
Msa1371090	AT4G10430.5	88.372	129	15	0	1	129	137	265	2.12e-83	249
Msa1371090	AT4G10430.8	88.372	129	15	0	1	129	61	189	4.16e-83	246
Msa1371090	AT4G10430.7	88.372	129	15	0	1	129	137	265	4.72e-83	248

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Find 58 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAGATATCAACGGCAA+AGG	0.582391	tig0019144:-163899	Msa1371090:CDS
AAATACAGTTCAGACTCTGT+TGG	0.591274	tig0019144:-162478	Msa1371090:CDS
AAGAGGATGGATGTTGTATG+GGG	0.617879	tig0019144:-163552	Msa1371090:CDS
ACCTCTATTGTACACTCTTT+TGG	0.190214	tig0019144:-162226	Msa1371090:three_prime_UTR
ACTCACAAGGGCCATTATCA+TGG	0.523040	tig0019144:+164108	None:intergenic
ACTTCTCATTCTAAGATCTT+GGG	0.408886	tig0019144:-165274	Msa1371090:CDS
ACTTGTTCCGGTGACGTAGC+AGG	0.504376	tig0019144:-162195	Msa1371090:three_prime_UTR
AGGATGATGATTGAATATTT+CGG	0.442937	tig0019144:-162175	Msa1371090:three_prime_UTR
AGTACCTGGTAAATCTGTAC+TGG	0.468262	tig0019144:+165225	None:intergenic
AGTCTCACTTGGGAAATAAA+AGG	0.361860	tig0019144:-164088	Msa1371090:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACATGACATGAAACAAGAT+TGG	+	tig0019144:162161-162180	None:intergenic	30.0%
GAGAACATATTGAGAGTAAA+TGG	-	tig0019144:162284-162303	Msa1371090:three_prime_UTR	30.0%
TGATCCTTGTGAAACAATAA+TGG	-	tig0019144:162378-162397	Msa1371090:three_prime_UTR	30.0%
ATCAAGATGTGGAATTTGAA+TGG	+	tig0019144:162518-162537	None:intergenic	30.0%
TTATTTCAATTAGTTCGGAC+GGG	-	tig0019144:162564-162583	Msa1371090:intron	30.0%
AACTCAATAAGTTCAGAAAC+AGG	+	tig0019144:162891-162910	None:intergenic	30.0%
TTGCTATGCAAGATAGAAAA+AGG	+	tig0019144:162926-162945	None:intergenic	30.0%
TTACATGGGACAAAATTGTT+TGG	-	tig0019144:163170-163189	Msa1371090:intron	30.0%
TCATTATTGTGCCATGATAA+TGG	-	tig0019144:163231-163250	Msa1371090:intron	30.0%
AAAGAAAAAGCTAATGGTCA+GGG	+	tig0019144:163326-163345	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0019144	gene	162074	165298	162074	ID=Msa1371090;Name=Msa1371090
tig0019144	mRNA	162074	165298	162074	ID=Msa1371090-mRNA-1;Parent=Msa1371090;Name=Msa1371090-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0\|0.66\|0.57\|1\|0.83\|0.85\|7\|345\|195
tig0019144	exon	162074	162550	162074	ID=Msa1371090-mRNA-1:exon:2037;Parent=Msa1371090-mRNA-1
tig0019144	exon	162691	162759	162691	ID=Msa1371090-mRNA-1:exon:2036;Parent=Msa1371090-mRNA-1
tig0019144	exon	163539	163577	163539	ID=Msa1371090-mRNA-1:exon:2035;Parent=Msa1371090-mRNA-1
tig0019144	exon	163872	163979	163872	ID=Msa1371090-mRNA-1:exon:2034;Parent=Msa1371090-mRNA-1
tig0019144	exon	164063	164153	164063	ID=Msa1371090-mRNA-1:exon:2033;Parent=Msa1371090-mRNA-1
tig0019144	exon	165048	165127	165048	ID=Msa1371090-mRNA-1:exon:2032;Parent=Msa1371090-mRNA-1
tig0019144	exon	165230	165298	165230	ID=Msa1371090-mRNA-1:exon:2031;Parent=Msa1371090-mRNA-1
tig0019144	CDS	165230	165298	165230	ID=Msa1371090-mRNA-1:cds;Parent=Msa1371090-mRNA-1
tig0019144	CDS	165048	165127	165048	ID=Msa1371090-mRNA-1:cds;Parent=Msa1371090-mRNA-1
tig0019144	CDS	164063	164153	164063	ID=Msa1371090-mRNA-1:cds;Parent=Msa1371090-mRNA-1
tig0019144	CDS	163872	163979	163872	ID=Msa1371090-mRNA-1:cds;Parent=Msa1371090-mRNA-1
tig0019144	CDS	163539	163577	163539	ID=Msa1371090-mRNA-1:cds;Parent=Msa1371090-mRNA-1
tig0019144	CDS	162691	162759	162691	ID=Msa1371090-mRNA-1:cds;Parent=Msa1371090-mRNA-1
tig0019144	CDS	162419	162550	162419	ID=Msa1371090-mRNA-1:cds;Parent=Msa1371090-mRNA-1
tig0019144	three_prime_UTR	162074	162418	162074	ID=Msa1371090-mRNA-1:three_prime_utr;Parent=Msa1371090-mRNA-1

Gene Sequence

>Msa1371090

GCACTTCTCATTCTAAGATCTTGGGTTTGGGAGGGTTGTTTGCCAGCTTTTCCAGTACAGATTTACCAGGCCTGGCTGCTATTTCTTTACACTGGTTTGGCGTTGCGAGAGAACATATTGAGAGTAAATGGAAGTGATATTCGTCCATGGTGGATATATCATCATTATTGTGCCATGATAATGGCCCTTGTGAGTCTCACTTGGGAAATAAAAGGACAACCAGACTGCGCAAAAAAGCAGAGAGGTGTACAACTTTTCCTACAGTGGGCTATGATGCAAGGAGTTGCAATGCTTTTGCAAAATAGATATCAACGGCAAAGGCTTTATACTCGTATTGCGTTGGGAAAGGCTAAGAGGATGGATGTTGTATGGGGAGAAACAGCTGGTGGATTTGAGGCATATGTCGGACTATTGTTGCTCAGAACTGCATTTGTTGGGGTGGCTTCTGAATGGCAGGTAATATTTTGCGGTCTCCTGTTGGTTGTCATGGCCATTGGGAACTTTCAAAATACAGTTCAGACTCTGTTGGTAAAGTCAAGATTTAAGGCGAAGATGAAAAGAACCAAGAGCAAGCAGAGACTGAATTAG

Protein sequence

>Msa1371090

ALLILRSWVWEGCLPAFPVQIYQAWLLFLYTGLALRENILRVNGSDIRPWWIYHHYCAMIMALVSLTWEIKGQPDCAKKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGGFEAYVGLLLLRTAFVGVASEWQVIFCGLLLVVMAIGNFQNTVQTLLVKSRFKAKMKRTKSKQRLN*