AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1371090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1371090 MtrunA17_Chr1g0213491 92.417 211 0 1 1 195 151 361 1.30e-139 394
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1371090 AT4G10430.1 75.829 211 35 1 1 195 137 347 6.34e-115 331
Msa1371090 AT4G10430.3 75.829 211 35 1 1 195 137 347 6.34e-115 331
Msa1371090 AT1G33230.1 75.598 209 35 1 2 194 139 347 6.79e-114 328
Msa1371090 AT1G33230.2 75.598 209 35 1 2 194 146 354 1.96e-113 327
Msa1371090 AT4G10430.4 88.372 129 15 0 1 129 137 265 2.12e-83 249
Msa1371090 AT4G10430.6 88.372 129 15 0 1 129 137 265 2.12e-83 249
Msa1371090 AT4G10430.9 88.372 129 15 0 1 129 137 265 2.12e-83 249
Msa1371090 AT4G10430.5 88.372 129 15 0 1 129 137 265 2.12e-83 249
Msa1371090 AT4G10430.8 88.372 129 15 0 1 129 61 189 4.16e-83 246
Msa1371090 AT4G10430.7 88.372 129 15 0 1 129 137 265 4.72e-83 248
Msa1371090 AT4G10430.2 88.372 129 15 0 1 129 61 189 8.64e-83 246

Find 58 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCATCTAAAGAGTAAATT+TGG 0.164928 tig0019144:-162282 Msa1371090:three_prime_UTR
ACCTCTATTGTACACTCTTT+TGG 0.190214 tig0019144:-162226 Msa1371090:three_prime_UTR
GTTGGTAAAGTCAAGATTTA+AGG 0.208316 tig0019144:-162460 Msa1371090:CDS
CACTTCTCATTCTAAGATCT+TGG 0.270929 tig0019144:-165275 Msa1371090:CDS
TCATTCTAAGATCTTGGGTT+TGG 0.289517 tig0019144:-165269 Msa1371090:CDS
GAGAACATATTGAGAGTAAA+TGG 0.297201 tig0019144:-165066 Msa1371090:CDS
CATTCTAAGATCTTGGGTTT+GGG 0.313165 tig0019144:-165268 Msa1371090:CDS
TGCTCAGAACTGCATTTGTT+GGG 0.327140 tig0019144:-162709 Msa1371090:CDS
TGCATGTCTAGTGATTATTT+TGG 0.334914 tig0019144:-162329 Msa1371090:three_prime_UTR
TTGGGTCGCCATACTTGTTC+CGG 0.348631 tig0019144:-162207 Msa1371090:three_prime_UTR
TCATTATTGTGCCATGATAA+TGG 0.352720 tig0019144:-164119 Msa1371090:CDS
GCTATTTCTTTACACTGGTT+TGG 0.353138 tig0019144:-165097 Msa1371090:CDS
AGTCTCACTTGGGAAATAAA+AGG 0.361860 tig0019144:-164088 Msa1371090:CDS
ATTCAGTCTCTGCTTGCTCT+TGG 0.362711 tig0019144:+162422 None:intergenic
CTACGTCACCGGAACAAGTA+TGG 0.383151 tig0019144:+162199 None:intergenic
TTGCTCAGAACTGCATTTGT+TGG 0.406680 tig0019144:-162710 Msa1371090:CDS
ACTTCTCATTCTAAGATCTT+GGG 0.408886 tig0019144:-165274 Msa1371090:CDS
CGGTCTCCTGTTGGTTGTCA+TGG 0.422234 tig0019144:-162517 Msa1371090:CDS
CTAAGAGGATGGATGTTGTA+TGG 0.431027 tig0019144:-163554 Msa1371090:CDS
CTGTTGGTTGTCATGGCCAT+TGG 0.440508 tig0019144:-162510 Msa1371090:CDS
AGGATGATGATTGAATATTT+CGG 0.442937 tig0019144:-162175 Msa1371090:three_prime_UTR
CTTTATACTCGTATTGCGTT+GGG 0.451111 tig0019144:-163876 Msa1371090:CDS
TGTTGGTTGTCATGGCCATT+GGG 0.457433 tig0019144:-162509 Msa1371090:CDS
CAGAACTGCATTTGTTGGGG+TGG 0.458831 tig0019144:-162705 Msa1371090:CDS
AGTACCTGGTAAATCTGTAC+TGG 0.468262 tig0019144:+165225 None:intergenic
GCTTTATACTCGTATTGCGT+TGG 0.475449 tig0019144:-163877 Msa1371090:CDS
TCTTTGAATTATAGGCTAAG+AGG 0.476272 tig0019144:-163569 Msa1371090:intron
TGGGGTGGCTTCTGAATGGC+AGG 0.477673 tig0019144:-162690 Msa1371090:intron
TGGCCCTTGTGAGTCTCACT+TGG 0.486035 tig0019144:-164099 Msa1371090:CDS
TGGCTGCTATTTCTTTACAC+TGG 0.488932 tig0019144:-165102 Msa1371090:CDS
TCTAAGATCTTGGGTTTGGG+AGG 0.490954 tig0019144:-165265 Msa1371090:CDS
CTAAGATCTTGGGTTTGGGA+GGG 0.495096 tig0019144:-165264 Msa1371090:CDS
GCTTACTTGAATGAATGTAA+AGG 0.495493 tig0019144:-162107 Msa1371090:three_prime_UTR
TTGTTGGGGTGGCTTCTGAA+TGG 0.501334 tig0019144:-162694 Msa1371090:CDS
TAAGAGGATGGATGTTGTAT+GGG 0.503535 tig0019144:-163553 Msa1371090:CDS
ACTTGTTCCGGTGACGTAGC+AGG 0.504376 tig0019144:-162195 Msa1371090:three_prime_UTR
TACTCGTATTGCGTTGGGAA+AGG 0.514448 tig0019144:-163871 Msa1371090:intron
CAATGGCCATGACAACCAAC+AGG 0.515846 tig0019144:+162511 None:intergenic
TATATTGGTTCAGGGATTTG+AGG 0.518924 tig0019144:-162750 Msa1371090:intron
ACTCACAAGGGCCATTATCA+TGG 0.523040 tig0019144:+164108 None:intergenic
TAAATCTGTACTGGAAAAGC+TGG 0.542899 tig0019144:+165234 None:intergenic
TCATCATCCTGCTACGTCAC+CGG 0.545961 tig0019144:+162188 None:intergenic
CCCAAAAGAGTGTACAATAG+AGG 0.546830 tig0019144:+162225 None:intergenic
GCTCAGAACTGCATTTGTTG+GGG 0.574408 tig0019144:-162708 Msa1371090:CDS
CAGGGATTTGAGGCATATGT+CGG 0.578726 tig0019144:-162740 Msa1371090:CDS
AAAATAGATATCAACGGCAA+AGG 0.582391 tig0019144:-163899 Msa1371090:CDS
CTACAGTGGGCTATGATGCA+AGG 0.587397 tig0019144:-163939 Msa1371090:CDS
AAATACAGTTCAGACTCTGT+TGG 0.591274 tig0019144:-162478 Msa1371090:CDS
TTTCCCAAGTGAGACTCACA+AGG 0.597093 tig0019144:+164095 None:intergenic
TGAATTATAGGCTAAGAGGA+TGG 0.614666 tig0019144:-163565 Msa1371090:intron
CTTGCATCATAGCCCACTGT+AGG 0.615039 tig0019144:+163940 None:intergenic
AAGAGGATGGATGTTGTATG+GGG 0.617879 tig0019144:-163552 Msa1371090:CDS
GTTGTATGGGGAGAAACAGC+TGG 0.623308 tig0019144:-163540 Msa1371090:CDS
GGCCCTTGTGAGTCTCACTT+GGG 0.623892 tig0019144:-164098 Msa1371090:CDS
ATGGAAGTGATATTCGTCCA+TGG 0.625077 tig0019144:-165047 Msa1371090:intron
AGTGTAAAGAAATAGCAGCC+AGG 0.633016 tig0019144:+165104 None:intergenic
TTCCCAAGTGAGACTCACAA+GGG 0.703885 tig0019144:+164096 None:intergenic
TAATCACTAGACATGCACAG+TGG 0.795914 tig0019144:+162335 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATATCAAAATTTGAAT+AGG - tig0019144:164718-164737 Msa1371090:intron 10.0%
!! ACCATAAAATTAATATCATA+GGG + tig0019144:163706-163725 None:intergenic 15.0%
!! AACCATAAAATTAATATCAT+AGG + tig0019144:163707-163726 None:intergenic 15.0%
!!! CTTTTCTTTTCTAAAAATTA+AGG + tig0019144:164063-164082 None:intergenic 15.0%
!! AATAATCTTAAAAAAGATCA+TGG + tig0019144:165212-165231 None:intergenic 15.0%
!! AGACATTATTTCAATTAGTT+CGG - tig0019144:162559-162578 Msa1371090:intron 20.0%
!!! TTCTCTTTTACGATAATAAA+GGG + tig0019144:163008-163027 None:intergenic 20.0%
!!! ATTCTCTTTTACGATAATAA+AGG + tig0019144:163009-163028 None:intergenic 20.0%
!!! TTTTGCAAAATAGATATCAA+CGG - tig0019144:163445-163464 Msa1371090:intron 20.0%
!! TAAAATATACTATTTAGCAG+TGG + tig0019144:163507-163526 None:intergenic 20.0%
!!! TCCCTATGATATTAATTTTA+TGG - tig0019144:163702-163721 Msa1371090:intron 20.0%
!!! TCTCATTTTCTTTGAATTAT+AGG - tig0019144:163773-163792 Msa1371090:intron 20.0%
!!! TTATTAAGTCCAAGTTTTTT+TGG - tig0019144:164238-164257 Msa1371090:intron 20.0%
!!! TTATTTTTTGATAAGCTGTT+TGG - tig0019144:164327-164346 Msa1371090:intron 20.0%
!! GAAGAGTTAATATCATTATA+AGG + tig0019144:164796-164815 None:intergenic 20.0%
! ATTATTTCAATTAGTTCGGA+CGG - tig0019144:162563-162582 Msa1371090:intron 25.0%
! AAACAAACAGTTTCAAACAA+AGG + tig0019144:162804-162823 None:intergenic 25.0%
!!! TTTGAAACTGTTTGTTTTTG+AGG - tig0019144:162807-162826 Msa1371090:intron 25.0%
! TCTTTCATAATTGCTTAAAG+AGG - tig0019144:162975-162994 Msa1371090:intron 25.0%
! CTTTGTACTCAATCTAATAT+GGG + tig0019144:163052-163071 None:intergenic 25.0%
! TCTTTGTACTCAATCTAATA+TGG + tig0019144:163053-163072 None:intergenic 25.0%
! ATTAGATTGAGTACAAAGAA+TGG - tig0019144:163054-163073 Msa1371090:intron 25.0%
! TTAGATTGAGTACAAAGAAT+GGG - tig0019144:163055-163074 Msa1371090:intron 25.0%
!!! ATTTTCATTCCTTGTTTACA+TGG - tig0019144:163155-163174 Msa1371090:intron 25.0%
!!! TTTTCATTCCTTGTTTACAT+GGG - tig0019144:163156-163175 Msa1371090:intron 25.0%
! CATCAAAAAGAAAAAGCTAA+TGG + tig0019144:163332-163351 None:intergenic 25.0%
! CTATTTCCAATCAATATGTT+TGG + tig0019144:163738-163757 None:intergenic 25.0%
! TTATTCCAAAAACATAAGGA+TGG + tig0019144:164109-164128 None:intergenic 25.0%
! GCAATTATTCCAAAAACATA+AGG + tig0019144:164113-164132 None:intergenic 25.0%
!!! TTTTGGAATAATTGCACATT+TGG - tig0019144:164118-164137 Msa1371090:CDS 25.0%
! ATAATAGCACCAAAAAAACT+TGG + tig0019144:164250-164269 None:intergenic 25.0%
! GTAACTGTTTAACTCAATAT+AGG + tig0019144:164302-164321 None:intergenic 25.0%
! GCATATATCATGTGTTAATA+TGG - tig0019144:164409-164428 Msa1371090:intron 25.0%
! ATTCGCGAAAATTGAATTAT+CGG - tig0019144:164507-164526 Msa1371090:intron 25.0%
!! TATCGGATTTATTCATGTTT+TGG - tig0019144:164524-164543 Msa1371090:intron 25.0%
! CATTAAAATGATTCTGATTC+TGG - tig0019144:164745-164764 Msa1371090:intron 25.0%
! ATGCATCTAAAGAGTAAATT+TGG - tig0019144:165068-165087 Msa1371090:CDS 25.0%
! AGGATGATGATTGAATATTT+CGG - tig0019144:165175-165194 Msa1371090:intron 25.0%
! AATCTTAAAAAAGATCATGG+AGG + tig0019144:165209-165228 None:intergenic 25.0%
!! ACTTCTCATTCTAAGATCTT+GGG - tig0019144:162076-162095 Msa1371090:three_prime_UTR 30.0%
!! TTGGTTTAAAAGAAAGTACC+TGG + tig0019144:162142-162161 None:intergenic 30.0%
AACATGACATGAAACAAGAT+TGG + tig0019144:162161-162180 None:intergenic 30.0%
GAGAACATATTGAGAGTAAA+TGG - tig0019144:162284-162303 Msa1371090:three_prime_UTR 30.0%
TGATCCTTGTGAAACAATAA+TGG - tig0019144:162378-162397 Msa1371090:three_prime_UTR 30.0%
ATCAAGATGTGGAATTTGAA+TGG + tig0019144:162518-162537 None:intergenic 30.0%
TTATTTCAATTAGTTCGGAC+GGG - tig0019144:162564-162583 Msa1371090:intron 30.0%
! GCAATGTTTAAGCTTTATGA+TGG - tig0019144:162590-162609 Msa1371090:intron 30.0%
! ATGTTTAAGCTTTATGATGG+AGG - tig0019144:162593-162612 Msa1371090:intron 30.0%
! TGTTTAAGCTTTATGATGGA+GGG - tig0019144:162594-162613 Msa1371090:intron 30.0%
AACTCAATAAGTTCAGAAAC+AGG + tig0019144:162891-162910 None:intergenic 30.0%
!! GAACTTATTGAGTTTTTCAG+TGG - tig0019144:162897-162916 Msa1371090:intron 30.0%
TTGCTATGCAAGATAGAAAA+AGG + tig0019144:162926-162945 None:intergenic 30.0%
! AATTTTGTCCCATGTAAACA+AGG + tig0019144:163167-163186 None:intergenic 30.0%
TTACATGGGACAAAATTGTT+TGG - tig0019144:163170-163189 Msa1371090:intron 30.0%
TCATTATTGTGCCATGATAA+TGG - tig0019144:163231-163250 Msa1371090:intron 30.0%
AAAGAAAAAGCTAATGGTCA+GGG + tig0019144:163326-163345 None:intergenic 30.0%
AAAAGAAAAAGCTAATGGTC+AGG + tig0019144:163327-163346 None:intergenic 30.0%
AAAATAGATATCAACGGCAA+AGG - tig0019144:163451-163470 Msa1371090:intron 30.0%
AAATAGTGAGAAAAAGACTC+GGG + tig0019144:163608-163627 None:intergenic 30.0%
CAAATAGTGAGAAAAAGACT+CGG + tig0019144:163609-163628 None:intergenic 30.0%
CTTTCTCCAAACATATTGAT+TGG - tig0019144:163729-163748 Msa1371090:intron 30.0%
TCTTTGAATTATAGGCTAAG+AGG - tig0019144:163781-163800 Msa1371090:intron 30.0%
! ACCTGCAATATGAAAAGTAT+GGG + tig0019144:163864-163883 None:intergenic 30.0%
TACCTGCAATATGAAAAGTA+TGG + tig0019144:163865-163884 None:intergenic 30.0%
TCATAAGTAGCCATATAGTA+TGG + tig0019144:163889-163908 None:intergenic 30.0%
!! TATGTTTGGGAGTTTGATTT+TGG - tig0019144:163929-163948 Msa1371090:CDS 30.0%
TGCTTCGAAATTTATTGTTC+TGG - tig0019144:164462-164481 Msa1371090:intron 30.0%
!! TTTTGGAAATAACCTGAACT+TGG - tig0019144:164541-164560 Msa1371090:intron 30.0%
CTTTCTTTGTGATCCTATAT+TGG - tig0019144:164585-164604 Msa1371090:intron 30.0%
AATGAAGTAAAAAAGCAAGC+AGG + tig0019144:164698-164717 None:intergenic 30.0%
!! TGTATTTTGAAAGTTCCCAA+TGG + tig0019144:164859-164878 None:intergenic 30.0%
! GTTGGTAAAGTCAAGATTTA+AGG - tig0019144:164890-164909 Msa1371090:intron 30.0%
! TGCATGTCTAGTGATTATTT+TGG - tig0019144:165021-165040 Msa1371090:intron 30.0%
GCTTACTTGAATGAATGTAA+AGG - tig0019144:165243-165262 Msa1371090:CDS 30.0%
!! CACTTCTCATTCTAAGATCT+TGG - tig0019144:162075-162094 Msa1371090:three_prime_UTR 35.0%
!! TCATTCTAAGATCTTGGGTT+TGG - tig0019144:162081-162100 Msa1371090:three_prime_UTR 35.0%
!! CATTCTAAGATCTTGGGTTT+GGG - tig0019144:162082-162101 Msa1371090:three_prime_UTR 35.0%
TAAATCTGTACTGGAAAAGC+TGG + tig0019144:162119-162138 None:intergenic 35.0%
! TTTTCCAGTACAGATTTACC+AGG - tig0019144:162121-162140 Msa1371090:three_prime_UTR 35.0%
!! ATTGAGCGTGATCATTTTTC+AGG - tig0019144:162223-162242 Msa1371090:three_prime_UTR 35.0%
!! GCTATTTCTTTACACTGGTT+TGG - tig0019144:162253-162272 Msa1371090:three_prime_UTR 35.0%
! CTTCAAACCCTTTTTAATCC+AGG - tig0019144:162332-162351 Msa1371090:three_prime_UTR 35.0%
CAGAAAGCCTGGATTAAAAA+GGG + tig0019144:162342-162361 None:intergenic 35.0%
ATATAAACTACCAGAAAGCC+TGG + tig0019144:162353-162372 None:intergenic 35.0%
TGGTCCATTATTGTTTCACA+AGG + tig0019144:162385-162404 None:intergenic 35.0%
AATGGACCACAGTTCATTAA+CGG - tig0019144:162396-162415 Msa1371090:three_prime_UTR 35.0%
TATTACCCGTTAATGAACTG+TGG + tig0019144:162405-162424 None:intergenic 35.0%
AAAGACTGAGAACAGAATCT+AGG + tig0019144:162439-162458 None:intergenic 35.0%
CCAAAGCATAAATCAAGATG+TGG + tig0019144:162529-162548 None:intergenic 35.0%
CCACATCTTGATTTATGCTT+TGG - tig0019144:162526-162545 Msa1371090:CDS 35.0%
CATCTTGATTTATGCTTTGG+AGG - tig0019144:162529-162548 Msa1371090:CDS 35.0%
! TTTTCAGACACTTGATTGAG+TGG + tig0019144:162690-162709 None:intergenic 35.0%
CAGACATGCTAATGAAGTTT+GGG + tig0019144:162762-162781 None:intergenic 35.0%
TCAGACATGCTAATGAAGTT+TGG + tig0019144:162763-162782 None:intergenic 35.0%
!!! ACTGTTTGTTTTTGAGGCTT+TGG - tig0019144:162813-162832 Msa1371090:intron 35.0%
TCAATCTAATATGGGATCAC+GGG + tig0019144:163044-163063 None:intergenic 35.0%
CTCAATCTAATATGGGATCA+CGG + tig0019144:163045-163064 None:intergenic 35.0%
ACAAGAATGACAGTTTAAGC+TGG + tig0019144:163105-163124 None:intergenic 35.0%
TGGCAAATAAAGTTACTGTG+CGG - tig0019144:163190-163209 Msa1371090:intron 35.0%
AGTCTCACTTGGGAAATAAA+AGG - tig0019144:163262-163281 Msa1371090:intron 35.0%
! TGTACAACTTTTCCTACAGT+GGG - tig0019144:163398-163417 Msa1371090:intron 35.0%
CTTTATACTCGTATTGCGTT+GGG - tig0019144:163474-163493 Msa1371090:intron 35.0%
! ATGACGGAAAAATTATGCGT+GGG + tig0019144:163565-163584 None:intergenic 35.0%
TGAATTATAGGCTAAGAGGA+TGG - tig0019144:163785-163804 Msa1371090:intron 35.0%
TAAGAGGATGGATGTTGTAT+GGG - tig0019144:163797-163816 Msa1371090:intron 35.0%
! TCCCATACTTTTCATATTGC+AGG - tig0019144:163860-163879 Msa1371090:intron 35.0%
TTGCAGGTAACCATACTATA+TGG - tig0019144:163876-163895 Msa1371090:CDS 35.0%
TGATGTATGTTAGCCACTTA+TGG - tig0019144:163906-163925 Msa1371090:CDS 35.0%
TTAGCCACTTATGGTATGTT+TGG - tig0019144:163915-163934 Msa1371090:CDS 35.0%
TAGCCACTTATGGTATGTTT+GGG - tig0019144:163916-163935 Msa1371090:CDS 35.0%
!! TTTGGGAGTTTGATTTTGGA+GGG - tig0019144:163933-163952 Msa1371090:CDS 35.0%
! AACATAAGGATGGAGGATTT+TGG + tig0019144:164099-164118 None:intergenic 35.0%
! ATCCTCCATCCTTATGTTTT+TGG - tig0019144:164101-164120 Msa1371090:CDS 35.0%
TTCCAAAAACATAAGGATGG+AGG + tig0019144:164106-164125 None:intergenic 35.0%
GTTTGAGCTATGTACAACTT+TGG + tig0019144:164201-164220 None:intergenic 35.0%
ACGAATTAAGCACATCCAAA+TGG + tig0019144:164276-164295 None:intergenic 35.0%
!! GCATCTTTTGTTGTGAGTAA+CGG - tig0019144:164376-164395 Msa1371090:intron 35.0%
!! TTGTGATCCTATATTGGTTC+AGG - tig0019144:164591-164610 Msa1371090:intron 35.0%
!! TGTGATCCTATATTGGTTCA+GGG - tig0019144:164592-164611 Msa1371090:intron 35.0%
TCAAATCCCTGAACCAATAT+AGG + tig0019144:164601-164620 None:intergenic 35.0%
!! TATATTGGTTCAGGGATTTG+AGG - tig0019144:164600-164619 Msa1371090:intron 35.0%
ATGATATTAACTCTTCGAGC+AGG - tig0019144:164800-164819 Msa1371090:intron 35.0%
! TTCGAGCAGGTAATATTTTG+CGG - tig0019144:164813-164832 Msa1371090:intron 35.0%
AAATACAGTTCAGACTCTGT+TGG - tig0019144:164872-164891 Msa1371090:intron 35.0%
! CTGTGACTTAAGCTTTTGAT+AGG - tig0019144:164958-164977 Msa1371090:intron 35.0%
! CTTAAGCTTTTGATAGGATC+AGG - tig0019144:164964-164983 Msa1371090:intron 35.0%
! ACCTCTATTGTACACTCTTT+TGG - tig0019144:165124-165143 Msa1371090:intron 35.0%
! CCTCTATTGTACACTCTTTT+GGG - tig0019144:165125-165144 Msa1371090:intron 35.0%
AGTACCTGGTAAATCTGTAC+TGG + tig0019144:162128-162147 None:intergenic 40.0%
AGTGTAAAGAAATAGCAGCC+AGG + tig0019144:162249-162268 None:intergenic 40.0%
!! TGGCTGCTATTTCTTTACAC+TGG - tig0019144:162248-162267 Msa1371090:three_prime_UTR 40.0%
ATGGAAGTGATATTCGTCCA+TGG - tig0019144:162303-162322 Msa1371090:three_prime_UTR 40.0%
CCAGAAAGCCTGGATTAAAA+AGG + tig0019144:162343-162362 None:intergenic 40.0%
! CCTTTTTAATCCAGGCTTTC+TGG - tig0019144:162340-162359 Msa1371090:three_prime_UTR 40.0%
ATGGACCACAGTTCATTAAC+GGG - tig0019144:162397-162416 Msa1371090:three_prime_UTR 40.0%
! TTAAGCTTTATGATGGAGGG+AGG - tig0019144:162597-162616 Msa1371090:intron 40.0%
! TAAGCTTTATGATGGAGGGA+GGG - tig0019144:162598-162617 Msa1371090:intron 40.0%
AGTTTGGGAAGAAGGTTTCA+AGG + tig0019144:162747-162766 None:intergenic 40.0%
GCTAATGAAGTTTGGGAAGA+AGG + tig0019144:162755-162774 None:intergenic 40.0%
!!! GTTTGTTTTTGAGGCTTTGG+TGG - tig0019144:162816-162835 Msa1371090:intron 40.0%
GTGAGCAGAATATGGTGTTT+CGG - tig0019144:162838-162857 Msa1371090:intron 40.0%
! GTGTTTCGGAACTGTTTTCT+TGG - tig0019144:162852-162871 Msa1371090:intron 40.0%
! TTCGGAACTGTTTTCTTGGT+TGG - tig0019144:162856-162875 Msa1371090:intron 40.0%
!! GTTTTCTTGGTTGGTGTTTG+AGG - tig0019144:162865-162884 Msa1371090:intron 40.0%
CAATCTAATATGGGATCACG+GGG + tig0019144:163043-163062 None:intergenic 40.0%
GATTGAGTACAAAGAATGGG+AGG - tig0019144:163058-163077 Msa1371090:intron 40.0%
GTCATTCTTGTAAAGCATGC+CGG - tig0019144:163114-163133 Msa1371090:intron 40.0%
TCATTCTTGTAAAGCATGCC+GGG - tig0019144:163115-163134 Msa1371090:intron 40.0%
TAAAGTTACTGTGCGGTTAC+AGG - tig0019144:163197-163216 Msa1371090:intron 40.0%
TCTCAATTATGTGTGCAGAG+AGG - tig0019144:163375-163394 Msa1371090:intron 40.0%
! GTGTACAACTTTTCCTACAG+TGG - tig0019144:163397-163416 Msa1371090:intron 40.0%
GCTTTATACTCGTATTGCGT+TGG - tig0019144:163473-163492 Msa1371090:intron 40.0%
!! GATGACGGAAAAATTATGCG+TGG + tig0019144:163566-163585 None:intergenic 40.0%
AAACAGACAAAGCAGGATGA+CGG + tig0019144:163581-163600 None:intergenic 40.0%
CTAAGAGGATGGATGTTGTA+TGG - tig0019144:163796-163815 Msa1371090:intron 40.0%
AAGAGGATGGATGTTGTATG+GGG - tig0019144:163798-163817 Msa1371090:intron 40.0%
ACTCCCAAACATACCATAAG+TGG + tig0019144:163922-163941 None:intergenic 40.0%
!! GTTTGGGAGTTTGATTTTGG+AGG - tig0019144:163932-163951 Msa1371090:CDS 40.0%
! TAAGGATGGAGGATTTTGGA+GGG + tig0019144:164095-164114 None:intergenic 40.0%
! ATAAGGATGGAGGATTTTGG+AGG + tig0019144:164096-164115 None:intergenic 40.0%
TGTACATAGCTCAAACTCGA+TGG - tig0019144:164205-164224 Msa1371090:intron 40.0%
!! TGGTGCTATTATGAGCCATT+TGG - tig0019144:164258-164277 Msa1371090:intron 40.0%
AACCTGAACTTGGAAAAGCT+TGG - tig0019144:164551-164570 Msa1371090:intron 40.0%
TTGCTCAGAACTGCATTTGT+TGG - tig0019144:164640-164659 Msa1371090:intron 40.0%
TGCTCAGAACTGCATTTGTT+GGG - tig0019144:164641-164660 Msa1371090:intron 40.0%
! GATTCTGATTCTGGTGATGT+TGG - tig0019144:164754-164773 Msa1371090:intron 40.0%
! AATATTTTGCGGTCTCCTGT+TGG - tig0019144:164824-164843 Msa1371090:intron 40.0%
TAATCACTAGACATGCACAG+TGG + tig0019144:165018-165037 None:intergenic 40.0%
! CCCAAAAGAGTGTACAATAG+AGG + tig0019144:165128-165147 None:intergenic 40.0%
TAAAAAAGATCATGGAGGCG+AGG + tig0019144:165204-165223 None:intergenic 40.0%
! TCTAAGATCTTGGGTTTGGG+AGG - tig0019144:162085-162104 Msa1371090:three_prime_UTR 45.0%
CTAAGATCTTGGGTTTGGGA+GGG - tig0019144:162086-162105 Msa1371090:three_prime_UTR 45.0%
AGGGTTTGAAGACTGTACCA+TGG + tig0019144:162323-162342 None:intergenic 45.0%
! TTTATGATGGAGGGAGGGTT+GGG - tig0019144:162603-162622 Msa1371090:intron 45.0%
TGGGTGCTCAAGAGCAATTA+TGG - tig0019144:162622-162641 Msa1371090:intron 45.0%
!! CTTTGGTGGTGAGCAGAATA+TGG - tig0019144:162830-162849 Msa1371090:intron 45.0%
TTGTAAAGCATGCCGGGATA+GGG - tig0019144:163121-163140 Msa1371090:intron 45.0%
ACTCACAAGGGCCATTATCA+TGG + tig0019144:163245-163264 None:intergenic 45.0%
TTCCCAAGTGAGACTCACAA+GGG + tig0019144:163257-163276 None:intergenic 45.0%
TTTCCCAAGTGAGACTCACA+AGG + tig0019144:163258-163277 None:intergenic 45.0%
TACTCGTATTGCGTTGGGAA+AGG - tig0019144:163479-163498 Msa1371090:intron 45.0%
GGGTGTTAAACAGACAAAGC+AGG + tig0019144:163588-163607 None:intergenic 45.0%
!! AAGGATGGAGGATTTTGGAG+GGG + tig0019144:164094-164113 None:intergenic 45.0%
CCAATAGTTTGAGCTATGCG+CGG - tig0019144:164143-164162 Msa1371090:intron 45.0%
CAATAGTTTGAGCTATGCGC+GGG - tig0019144:164144-164163 Msa1371090:intron 45.0%
TGCGCGGGACTAAAATCATT+TGG - tig0019144:164159-164178 Msa1371090:intron 45.0%
TGTGAGTAACGGTAGTTGAG+AGG - tig0019144:164387-164406 Msa1371090:intron 45.0%
! GTCCAAGCTTTTCCAAGTTC+AGG + tig0019144:164556-164575 None:intergenic 45.0%
! CAGGGATTTGAGGCATATGT+CGG - tig0019144:164610-164629 Msa1371090:intron 45.0%
! GCTCAGAACTGCATTTGTTG+GGG - tig0019144:164642-164661 Msa1371090:intron 45.0%
! TGTTGGTTGTCATGGCCATT+GGG - tig0019144:164841-164860 Msa1371090:intron 45.0%
ATTCAGTCTCTGCTTGCTCT+TGG + tig0019144:164931-164950 None:intergenic 45.0%
!!! GCGTGATCATTTTTCAGGCC+TGG - tig0019144:162228-162247 Msa1371090:three_prime_UTR 50.0%
! CTTTATGATGGAGGGAGGGT+TGG - tig0019144:162602-162621 Msa1371090:intron 50.0%
CTTGTAAAGCATGCCGGGAT+AGG - tig0019144:163120-163139 Msa1371090:intron 50.0%
TGTAAAGCATGCCGGGATAG+GGG - tig0019144:163122-163141 Msa1371090:intron 50.0%
AGTTACTGTGCGGTTACAGG+TGG - tig0019144:163200-163219 Msa1371090:intron 50.0%
ACCAGACTGCGCAAAAAAGC+AGG - tig0019144:163288-163307 Msa1371090:intron 50.0%
!!! ACCTGCTTTTTTGCGCAGTC+TGG + tig0019144:163292-163311 None:intergenic 50.0%
CTTGCATCATAGCCCACTGT+AGG + tig0019144:163413-163432 None:intergenic 50.0%
!! CTACAGTGGGCTATGATGCA+AGG - tig0019144:163411-163430 Msa1371090:intron 50.0%
GTTGTATGGGGAGAAACAGC+TGG - tig0019144:163810-163829 Msa1371090:intron 50.0%
!! ATGGAGGATTTTGGAGGGGA+GGG + tig0019144:164090-164109 None:intergenic 50.0%
CCGCGCATAGCTCAAACTAT+TGG + tig0019144:164146-164165 None:intergenic 50.0%
! CAGAACTGCATTTGTTGGGG+TGG - tig0019144:164645-164664 Msa1371090:intron 50.0%
TTGTTGGGGTGGCTTCTGAA+TGG - tig0019144:164656-164675 Msa1371090:intron 50.0%
CAATGGCCATGACAACCAAC+AGG + tig0019144:164842-164861 None:intergenic 50.0%
! CTGTTGGTTGTCATGGCCAT+TGG - tig0019144:164840-164859 Msa1371090:intron 50.0%
TTGGGTCGCCATACTTGTTC+CGG - tig0019144:165143-165162 Msa1371090:intron 50.0%
CTACGTCACCGGAACAAGTA+TGG + tig0019144:165154-165173 None:intergenic 50.0%
TCATCATCCTGCTACGTCAC+CGG + tig0019144:165165-165184 None:intergenic 50.0%
GTAAAGCATGCCGGGATAGG+GGG - tig0019144:163123-163142 Msa1371090:intron 55.0%
TGGCCCTTGTGAGTCTCACT+TGG - tig0019144:163251-163270 Msa1371090:intron 55.0%
GGCCCTTGTGAGTCTCACTT+GGG - tig0019144:163252-163271 Msa1371090:intron 55.0%
ATGGGGAGAAACAGCTGGTG+TGG - tig0019144:163815-163834 Msa1371090:intron 55.0%
GGAGAAACAGCTGGTGTGGA+TGG - tig0019144:163819-163838 Msa1371090:intron 55.0%
TGGGACACAGCAACCACAGT+TGG + tig0019144:163845-163864 None:intergenic 55.0%
!! GATGGAGGATTTTGGAGGGG+AGG + tig0019144:164091-164110 None:intergenic 55.0%
! CGGTCTCCTGTTGGTTGTCA+TGG - tig0019144:164833-164852 Msa1371090:intron 55.0%
ACTTGTTCCGGTGACGTAGC+AGG - tig0019144:165155-165174 Msa1371090:intron 55.0%
CTGGTGTGGATGGCCAACTG+TGG - tig0019144:163829-163848 Msa1371090:intron 60.0%
TGGGGTGGCTTCTGAATGGC+AGG - tig0019144:164660-164679 Msa1371090:intron 60.0%
ATGCCGGGATAGGGGGAGAG+CGG - tig0019144:163130-163149 Msa1371090:intron 65.0%
TCTCCGCTCTCCCCCTATCC+CGG + tig0019144:163136-163155 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0019144 gene 162074 165298 162074 ID=Msa1371090;Name=Msa1371090
tig0019144 mRNA 162074 165298 162074 ID=Msa1371090-mRNA-1;Parent=Msa1371090;Name=Msa1371090-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.66|0.57|1|0.83|0.85|7|345|195
tig0019144 exon 162074 162550 162074 ID=Msa1371090-mRNA-1:exon:2037;Parent=Msa1371090-mRNA-1
tig0019144 exon 162691 162759 162691 ID=Msa1371090-mRNA-1:exon:2036;Parent=Msa1371090-mRNA-1
tig0019144 exon 163539 163577 163539 ID=Msa1371090-mRNA-1:exon:2035;Parent=Msa1371090-mRNA-1
tig0019144 exon 163872 163979 163872 ID=Msa1371090-mRNA-1:exon:2034;Parent=Msa1371090-mRNA-1
tig0019144 exon 164063 164153 164063 ID=Msa1371090-mRNA-1:exon:2033;Parent=Msa1371090-mRNA-1
tig0019144 exon 165048 165127 165048 ID=Msa1371090-mRNA-1:exon:2032;Parent=Msa1371090-mRNA-1
tig0019144 exon 165230 165298 165230 ID=Msa1371090-mRNA-1:exon:2031;Parent=Msa1371090-mRNA-1
tig0019144 CDS 165230 165298 165230 ID=Msa1371090-mRNA-1:cds;Parent=Msa1371090-mRNA-1
tig0019144 CDS 165048 165127 165048 ID=Msa1371090-mRNA-1:cds;Parent=Msa1371090-mRNA-1
tig0019144 CDS 164063 164153 164063 ID=Msa1371090-mRNA-1:cds;Parent=Msa1371090-mRNA-1
tig0019144 CDS 163872 163979 163872 ID=Msa1371090-mRNA-1:cds;Parent=Msa1371090-mRNA-1
tig0019144 CDS 163539 163577 163539 ID=Msa1371090-mRNA-1:cds;Parent=Msa1371090-mRNA-1
tig0019144 CDS 162691 162759 162691 ID=Msa1371090-mRNA-1:cds;Parent=Msa1371090-mRNA-1
tig0019144 CDS 162419 162550 162419 ID=Msa1371090-mRNA-1:cds;Parent=Msa1371090-mRNA-1
tig0019144 three_prime_UTR 162074 162418 162074 ID=Msa1371090-mRNA-1:three_prime_utr;Parent=Msa1371090-mRNA-1
Gene Sequence

>Msa1371090

GCACTTCTCATTCTAAGATCTTGGGTTTGGGAGGGTTGTTTGCCAGCTTTTCCAGTACAGATTTACCAGGCCTGGCTGCTATTTCTTTACACTGGTTTGGCGTTGCGAGAGAACATATTGAGAGTAAATGGAAGTGATATTCGTCCATGGTGGATATATCATCATTATTGTGCCATGATAATGGCCCTTGTGAGTCTCACTTGGGAAATAAAAGGACAACCAGACTGCGCAAAAAAGCAGAGAGGTGTACAACTTTTCCTACAGTGGGCTATGATGCAAGGAGTTGCAATGCTTTTGCAAAATAGATATCAACGGCAAAGGCTTTATACTCGTATTGCGTTGGGAAAGGCTAAGAGGATGGATGTTGTATGGGGAGAAACAGCTGGTGGATTTGAGGCATATGTCGGACTATTGTTGCTCAGAACTGCATTTGTTGGGGTGGCTTCTGAATGGCAGGTAATATTTTGCGGTCTCCTGTTGGTTGTCATGGCCATTGGGAACTTTCAAAATACAGTTCAGACTCTGTTGGTAAAGTCAAGATTTAAGGCGAAGATGAAAAGAACCAAGAGCAAGCAGAGACTGAATTAG

Protein sequence

>Msa1371090

ALLILRSWVWEGCLPAFPVQIYQAWLLFLYTGLALRENILRVNGSDIRPWWIYHHYCAMIMALVSLTWEIKGQPDCAKKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGGFEAYVGLLLLRTAFVGVASEWQVIFCGLLLVVMAIGNFQNTVQTLLVKSRFKAKMKRTKSKQRLN*