Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0623040 | XP_013466413.1 | 97.179 | 390 | 9 | 1 | 1 | 388 | 1 | 390 | 0.0 | 790 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0623040 | sp|Q84VY3|STAD6_ARATH | 77.654 | 358 | 76 | 3 | 33 | 386 | 32 | 389 | 0.0 | 587 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010210 | Msa0623040 | 0.871823 | 5.092910e-67 | -8.615850e-47 |
| Msa0016440 | Msa0623040 | 0.829263 | 5.678033e-55 | -8.615850e-47 |
| Msa0104740 | Msa0623040 | 0.972609 | 4.789564e-135 | -8.615850e-47 |
| Msa0623040 | Msa0876230 | 0.805270 | 1.447500e-49 | -8.615850e-47 |
| Msa0623040 | Msa0902270 | 0.868576 | 5.892807e-66 | -8.615850e-47 |
| Msa0623040 | Msa0970040 | 0.816136 | 6.459171e-52 | -8.615850e-47 |
| Msa0623040 | Msa0970100 | 0.811223 | 7.794606e-51 | -8.615850e-47 |
| Msa0623040 | Msa0978530 | 0.821394 | 4.133868e-53 | -8.615850e-47 |
| Msa0623040 | Msa1026710 | 0.830262 | 3.243176e-55 | -8.615850e-47 |
| Msa0623040 | Msa1130770 | 0.809165 | 2.164756e-50 | -8.615850e-47 |
| Msa0623040 | Msa1134740 | 0.801025 | 1.093805e-48 | -8.615850e-47 |
| Msa0623040 | Msa1134770 | 0.806317 | 8.725324e-50 | -8.615850e-47 |
| Msa0623040 | Msa1253270 | 0.801088 | 1.061672e-48 | -8.615850e-47 |
| Msa0623040 | Msa1263000 | 0.823125 | 1.639347e-53 | -8.615850e-47 |
| Msa0623040 | Msa1347610 | 0.829488 | 5.004942e-55 | -8.615850e-47 |
| Msa0623040 | Msa1356450 | 0.810362 | 1.196953e-50 | -8.615850e-47 |
| Msa0623040 | Msa1417950 | 0.800793 | 1.219845e-48 | -8.615850e-47 |
| Msa0623040 | Msa1447900 | 0.803595 | 3.234431e-49 | -8.615850e-47 |
| Msa0128340 | Msa0623040 | 0.816941 | 4.265283e-52 | -8.615850e-47 |
| Msa0128740 | Msa0623040 | 0.812106 | 5.009066e-51 | -8.615850e-47 |
| Msa0228690 | Msa0623040 | 0.972525 | 6.585292e-135 | -8.615850e-47 |
| Msa0244820 | Msa0623040 | -0.803850 | 2.863104e-49 | -8.615850e-47 |
| Msa0300670 | Msa0623040 | -0.804988 | 1.658214e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0623040 | MtrunA17_Chr1g0159321 | 97.179 | 390 | 9 | 1 | 1 | 388 | 1 | 390 | 0.0 | 790 |
| Msa0623040 | MtrunA17_Chr3g0126011 | 75.291 | 344 | 82 | 1 | 45 | 388 | 26 | 366 | 0.0 | 551 |
| Msa0623040 | MtrunA17_Chr3g0125981 | 71.745 | 361 | 92 | 2 | 26 | 386 | 18 | 368 | 0.0 | 539 |
| Msa0623040 | MtrunA17_Chr3g0125991 | 71.788 | 358 | 96 | 2 | 33 | 388 | 12 | 366 | 0.0 | 538 |
| Msa0623040 | MtrunA17_Chr3g0125781 | 71.429 | 350 | 97 | 1 | 39 | 388 | 23 | 369 | 0.0 | 534 |
| Msa0623040 | MtrunA17_Chr5g0406961 | 70.487 | 349 | 99 | 2 | 40 | 388 | 100 | 444 | 0.0 | 530 |
| Msa0623040 | MtrunA17_Chr4g0045661 | 70.487 | 349 | 99 | 2 | 40 | 388 | 49 | 393 | 0.0 | 528 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0623040 | AT1G43800.1 | 77.654 | 358 | 76 | 3 | 33 | 386 | 32 | 389 | 0.0 | 587 |
| Msa0623040 | AT3G02630.1 | 69.855 | 345 | 101 | 2 | 42 | 386 | 53 | 394 | 0.0 | 520 |
| Msa0623040 | AT2G43710.2 | 69.054 | 349 | 104 | 2 | 40 | 388 | 57 | 401 | 0.0 | 515 |
| Msa0623040 | AT2G43710.1 | 69.054 | 349 | 104 | 2 | 40 | 388 | 57 | 401 | 0.0 | 515 |
| Msa0623040 | AT5G16240.1 | 67.246 | 345 | 110 | 2 | 42 | 386 | 51 | 392 | 6.36e-178 | 501 |
| Msa0623040 | AT5G16230.1 | 67.353 | 340 | 109 | 2 | 50 | 388 | 63 | 401 | 5.36e-174 | 491 |
| Msa0623040 | AT3G02610.2 | 68.222 | 343 | 103 | 4 | 50 | 388 | 73 | 413 | 5.07e-173 | 489 |
| Msa0623040 | AT3G02610.1 | 68.222 | 343 | 103 | 4 | 50 | 388 | 71 | 411 | 5.95e-173 | 489 |
| Msa0623040 | AT3G02620.1 | 63.904 | 374 | 119 | 7 | 26 | 388 | 35 | 403 | 1.72e-170 | 482 |
| Msa0623040 | AT3G02620.2 | 63.904 | 374 | 119 | 7 | 26 | 388 | 38 | 406 | 1.97e-170 | 482 |
| Msa0623040 | AT5G16230.2 | 66.871 | 326 | 106 | 2 | 64 | 388 | 1 | 325 | 1.60e-165 | 466 |
| Msa0623040 | AT3G02620.3 | 66.869 | 329 | 103 | 4 | 64 | 388 | 1 | 327 | 1.99e-162 | 459 |
Find 117 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGACTTATTTGTATCTTTC+TGG | 0.182339 | 4_3:-222577 | Msa0623040:CDS |
| CAATGATTACGCTGATATTT+TGG | 0.196546 | 4_3:-221174 | Msa0623040:CDS |
| AAAACTGTTCAGTATCTTAT+TGG | 0.203529 | 4_3:-222529 | Msa0623040:CDS |
| GTGTATACAAATCCCAAGTA+TGG | 0.240289 | 4_3:+221503 | None:intergenic |
| GATTAACGGGTGAGGGAAAA+AGG | 0.240677 | 4_3:-221112 | Msa0623040:CDS |
| TGTTGTGTTGGTTGGTGATA+TGG | 0.248245 | 4_3:-222743 | Msa0623040:CDS |
| GTGGTGGTGATGGTGGATTT+TGG | 0.262583 | 4_3:+222997 | None:intergenic |
| TTTGGAATGTTCCATGTTAA+TGG | 0.266021 | 4_3:+223060 | None:intergenic |
| TGGTGGCATTGAGTGGGTTT+TGG | 0.304471 | 4_3:+222954 | None:intergenic |
| AGTTTGAATATGCATTGTTT+TGG | 0.317713 | 4_3:+223104 | None:intergenic |
| CTCTAATGTTGGAGAGGATA+TGG | 0.327487 | 4_3:-220805 | Msa0623040:three_prime_UTR |
| GTCCAAGCCCGTGGGCCGTT+TGG | 0.332806 | 4_3:-222645 | Msa0623040:CDS |
| TCTTTCTGGAAGGGTTGATA+TGG | 0.335225 | 4_3:-222563 | Msa0623040:CDS |
| GACACTAAACAAGGAACTTT+GGG | 0.344459 | 4_3:-220879 | Msa0623040:three_prime_UTR |
| GTCCAAACGGCCCACGGGCT+TGG | 0.353727 | 4_3:+222643 | None:intergenic |
| GCGGTGTGGTCGGTGGTTGA+TGG | 0.380740 | 4_3:+223035 | None:intergenic |
| GGCTGCCAGCATTGTTCCAC+TGG | 0.386228 | 4_3:+222865 | None:intergenic |
| TGACACTAAACAAGGAACTT+TGG | 0.388024 | 4_3:-220880 | Msa0623040:three_prime_UTR |
| AACGGCCCACGGGCTTGGAC+TGG | 0.398332 | 4_3:+222648 | None:intergenic |
| CACATGGGGTCAAGTTTAGT+TGG | 0.400607 | 4_3:-221007 | Msa0623040:CDS |
| TTTAATCGAACGGTGGAGAT+TGG | 0.401193 | 4_3:-221147 | Msa0623040:CDS |
| ATACAAATGTTGCTCGCTCT+TGG | 0.405320 | 4_3:+221474 | None:intergenic |
| GACAGAAAACAACCCATACT+TGG | 0.410965 | 4_3:-221516 | Msa0623040:CDS |
| GGTTAGCACCTAGGATTAGA+AGG | 0.411387 | 4_3:-221070 | Msa0623040:CDS |
| ATTTGATGAATTTACTGATC+AGG | 0.419139 | 4_3:-222812 | Msa0623040:CDS |
| TCAAATGGCAATGAAGGATC+AGG | 0.420107 | 4_3:+222829 | None:intergenic |
| CCACATATGCGCGCAAGCAC+TGG | 0.427060 | 4_3:+221410 | None:intergenic |
| GCGAAGTGCTCGAATAGCTT+AGG | 0.427800 | 4_3:+221230 | None:intergenic |
| CAAAATATCAGCGTAATCAT+TGG | 0.433099 | 4_3:+221175 | None:intergenic |
| GTAATAGGTGGCGGTGTGGT+CGG | 0.450987 | 4_3:+223025 | None:intergenic |
| GAAAAGCTTGAAGGATTAAC+GGG | 0.453295 | 4_3:-221125 | Msa0623040:CDS |
| TTTGCATTGGACAGGACCCC+GGG | 0.454311 | 4_3:-221538 | Msa0623040:intron |
| CGACGGTGGTGTGGTGGTGA+TGG | 0.457737 | 4_3:+222987 | None:intergenic |
| TGATCAGTAAATTCATCAAA+TGG | 0.459663 | 4_3:+222814 | None:intergenic |
| ATAGACATGGGGATTTGCTT+AGG | 0.460553 | 4_3:-222597 | Msa0623040:CDS |
| GGAAAAGCTTGAAGGATTAA+CGG | 0.464892 | 4_3:-221126 | Msa0623040:CDS |
| GGGCCGTTTGGACACGAGCT+TGG | 0.467549 | 4_3:-222633 | Msa0623040:CDS |
| ATTCGAGCACTTCGCGGCCG+TGG | 0.474737 | 4_3:-221222 | Msa0623040:CDS |
| GTTCAGTATCTTATTGGAGC+TGG | 0.477043 | 4_3:-222523 | Msa0623040:CDS |
| AATTCATCAAATGGCAATGA+AGG | 0.478762 | 4_3:+222823 | None:intergenic |
| CGAAGTGCTCGAATAGCTTA+GGG | 0.481594 | 4_3:+221231 | None:intergenic |
| TTGTGTGTGGGTTAGCACCT+AGG | 0.482074 | 4_3:-221079 | Msa0623040:CDS |
| AACAAGGAACTTTGGGTGAT+GGG | 0.486012 | 4_3:-220872 | Msa0623040:three_prime_UTR |
| TCTTGCAACCTTCTAATCCT+AGG | 0.486803 | 4_3:+221062 | None:intergenic |
| AATGGCTAGCATTGCTCCTG+TGG | 0.488560 | 4_3:+221313 | None:intergenic |
| AACACAACAAAATACTCATC+AGG | 0.489365 | 4_3:+222757 | None:intergenic |
| CCGGCACACCTTATGTATGA+TGG | 0.493314 | 4_3:-221260 | Msa0623040:CDS |
| GGTCTTGTCCATCATACATA+AGG | 0.494290 | 4_3:+221252 | None:intergenic |
| AGACTAGAGATTAAGAGCTA+AGG | 0.494866 | 4_3:-220928 | Msa0623040:three_prime_UTR |
| TTATTTGTATCTTTCTGGAA+GGG | 0.495330 | 4_3:-222572 | Msa0623040:CDS |
| GACTAGAGATTAAGAGCTAA+GGG | 0.495595 | 4_3:-220927 | Msa0623040:three_prime_UTR |
| CGGTGGTGTGGTGGTGATGG+TGG | 0.503987 | 4_3:+222990 | None:intergenic |
| GATGGTGTTGGTGATGAGGT+TGG | 0.504177 | 4_3:-222673 | Msa0623040:CDS |
| GCGGCCGTGGCACAGCGCAC+CGG | 0.504431 | 4_3:-221209 | Msa0623040:CDS |
| TGGAGATTGGAAAAGCTTGA+AGG | 0.504527 | 4_3:-221134 | Msa0623040:CDS |
| CCAGTGCTTGCGCGCATATG+TGG | 0.504826 | 4_3:-221410 | Msa0623040:CDS |
| ATGGCTAGCATTGCTCCTGT+GGG | 0.506752 | 4_3:+221314 | None:intergenic |
| GGAACTTTGGGTGATGGGAG+TGG | 0.519583 | 4_3:-220867 | Msa0623040:three_prime_UTR |
| AACTCCGGTGCGCTGTGCCA+CGG | 0.520106 | 4_3:+221205 | None:intergenic |
| TCTTGATGGTGTTGGTGATG+AGG | 0.523044 | 4_3:-222677 | Msa0623040:CDS |
| TAAAGCCAGTGGAACAATGC+TGG | 0.530542 | 4_3:-222870 | Msa0623040:CDS |
| GCTCGTGTCCAAACGGCCCA+CGG | 0.531927 | 4_3:+222637 | None:intergenic |
| TTTCTCCATCATATCACCAA+TGG | 0.532359 | 4_3:+221295 | None:intergenic |
| GTATCTTATTGGAGCTGGCA+TGG | 0.533582 | 4_3:-222518 | Msa0623040:intron |
| TTGGTTCCAGTCCAAGCCCG+TGG | 0.534499 | 4_3:-222654 | Msa0623040:CDS |
| TTGGTGGTGGTAATAGGTGG+CGG | 0.534962 | 4_3:+223016 | None:intergenic |
| TAAGCTATTCGAGCACTTCG+CGG | 0.535770 | 4_3:-221228 | Msa0623040:CDS |
| AGTCCAAGCTCGTGTCCAAA+CGG | 0.536753 | 4_3:+222630 | None:intergenic |
| GTTTGCATTGGACAGGACCC+CGG | 0.538725 | 4_3:-221539 | Msa0623040:intron |
| GGATTAGAAGGTTGCAAGAG+AGG | 0.539517 | 4_3:-221058 | Msa0623040:CDS |
| AGTATGATCAATGGTCTTGA+TGG | 0.539669 | 4_3:-222691 | Msa0623040:CDS |
| GCTAGCCATTGGTGATATGA+TGG | 0.539965 | 4_3:-221300 | Msa0623040:CDS |
| CTTATTTGTATCTTTCTGGA+AGG | 0.544191 | 4_3:-222573 | Msa0623040:CDS |
| CCATCATACATAAGGTGTGC+CGG | 0.547215 | 4_3:+221260 | None:intergenic |
| ATAGGTGGCGGTGTGGTCGG+TGG | 0.548279 | 4_3:+223028 | None:intergenic |
| AAACAAGGAACTTTGGGTGA+TGG | 0.549981 | 4_3:-220873 | Msa0623040:three_prime_UTR |
| TTTCAAATCACTAGAAAACT+GGG | 0.554024 | 4_3:-222917 | Msa0623040:CDS |
| CGTCGAGAAGCTTCTAGAAG+TGG | 0.554197 | 4_3:-221339 | Msa0623040:CDS |
| TGTTCCACTGGCTTTAGTAG+TGG | 0.556461 | 4_3:+222877 | None:intergenic |
| CTCGTGTCCAAACGGCCCAC+GGG | 0.556802 | 4_3:+222638 | None:intergenic |
| ACGGCTCGCTTAGCGAAAGA+AGG | 0.562132 | 4_3:-221440 | Msa0623040:CDS |
| ACAGGAGCAATGCTAGCCAT+TGG | 0.563098 | 4_3:-221311 | Msa0623040:CDS |
| CTTGAAGGATTAACGGGTGA+GGG | 0.586052 | 4_3:-221119 | Msa0623040:CDS |
| TGTATACAAATCCCAAGTAT+GGG | 0.587703 | 4_3:+221504 | None:intergenic |
| ACGTATCAGAGTATGATCAA+TGG | 0.591704 | 4_3:-222700 | Msa0623040:CDS |
| ACAGCGCACCGGAGTTTACA+CGG | 0.592150 | 4_3:-221198 | Msa0623040:CDS |
| ATCATTGGCCGTGTAAACTC+CGG | 0.595715 | 4_3:+221190 | None:intergenic |
| GATGTTGTTACTTGTTTGCG+TGG | 0.596003 | 4_3:-220771 | Msa0623040:three_prime_UTR |
| TTAAGACACTTCCATTAACA+TGG | 0.596362 | 4_3:-223071 | Msa0623040:CDS |
| GATTAGAAGGTTGCAAGAGA+GGG | 0.596681 | 4_3:-221057 | Msa0623040:CDS |
| ACAGAAAACAACCCATACTT+GGG | 0.596760 | 4_3:-221515 | Msa0623040:CDS |
| CTTCTAGAAGTGGACCCCAC+AGG | 0.596989 | 4_3:-221329 | Msa0623040:CDS |
| ATCAATGGTCTTGATGGTGT+TGG | 0.597547 | 4_3:-222685 | Msa0623040:CDS |
| CAACTAAACTTGACCCCATG+TGG | 0.598754 | 4_3:+221008 | None:intergenic |
| TGAATTTACTGATCAGGTGA+AGG | 0.600944 | 4_3:-222806 | Msa0623040:CDS |
| GTTGGTTGGTGATATGGTGA+CGG | 0.602166 | 4_3:-222737 | Msa0623040:CDS |
| GCTTGAAGGATTAACGGGTG+AGG | 0.603070 | 4_3:-221120 | Msa0623040:CDS |
| TGGTTCCAGTCCAAGCCCGT+GGG | 0.608947 | 4_3:-222653 | Msa0623040:CDS |
| CGAGCAACATTTGTATCACA+CGG | 0.621285 | 4_3:-221467 | Msa0623040:CDS |
| ATTTGTATCACACGGAAACA+CGG | 0.623224 | 4_3:-221459 | Msa0623040:CDS |
| TTGATCATACTCTGATACGT+CGG | 0.624523 | 4_3:+222703 | None:intergenic |
| CAAATGGCAATGAAGGATCA+GGG | 0.626451 | 4_3:+222830 | None:intergenic |
| CAACAAAATACTCATCAGGA+AGG | 0.632422 | 4_3:+222761 | None:intergenic |
| GGTGGTAATAGGTGGCGGTG+TGG | 0.634289 | 4_3:+223021 | None:intergenic |
| TGGCTAGCATTGCTCCTGTG+GGG | 0.636911 | 4_3:+221315 | None:intergenic |
| CTCGTAAGATGAAACCACAT+GGG | 0.643536 | 4_3:-221022 | Msa0623040:CDS |
| CTGCTGAAGAAAATAGACAT+GGG | 0.645814 | 4_3:-222609 | Msa0623040:CDS |
| GCTCGTAAGATGAAACCACA+TGG | 0.658763 | 4_3:-221023 | Msa0623040:CDS |
| TGCTGAAGAAAATAGACATG+GGG | 0.668352 | 4_3:-222608 | Msa0623040:CDS |
| ACTGCTGAAGAAAATAGACA+TGG | 0.671679 | 4_3:-222610 | Msa0623040:CDS |
| TTTACCACTACTAAAGCCAG+TGG | 0.671826 | 4_3:-222881 | Msa0623040:CDS |
| ACTAATCTTGACACTAAACA+AGG | 0.675822 | 4_3:-220888 | Msa0623040:three_prime_UTR |
| GCTCGCTTAGCGAAAGAAGG+CGG | 0.694123 | 4_3:-221437 | Msa0623040:CDS |
| GGTCCTTCGTGCGATCACGA+AGG | 0.703598 | 4_3:+222782 | None:intergenic |
| GGATCAGGGAGAAAATTCTG+TGG | 0.710660 | 4_3:+222844 | None:intergenic |
| GGTCCTTCGTGATCGCACGA+AGG | 0.710721 | 4_3:-222785 | Msa0623040:CDS |
| TCGTAAGATGAAACCACATG+GGG | 0.759922 | 4_3:-221021 | Msa0623040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAATAATTAGATAAAT+TGG | - | chr4_3:221373-221392 | Msa0623040:CDS | 10.0% |
| !! | ATTAAAAATAAATCTATGAT+AGG | - | chr4_3:221727-221746 | Msa0623040:intron | 10.0% |
| !! | TTAAAAATAAATCTATGATA+GGG | - | chr4_3:221728-221747 | Msa0623040:intron | 10.0% |
| !! | CATATTATTAATTAAAGTGA+TGG | - | chr4_3:221410-221429 | Msa0623040:CDS | 15.0% |
| !! | AAAAAAAAAAAAAAAAACCG+AGG | + | chr4_3:221786-221805 | None:intergenic | 15.0% |
| !!! | TTTTTTACTTTCTAACTAAA+TGG | - | chr4_3:222184-222203 | Msa0623040:intron | 15.0% |
| !! | ATATGATCTATACTAGTTAA+TGG | + | chr4_3:221651-221670 | None:intergenic | 20.0% |
| !! | TTGAAAAAATATAGAATCCT+CGG | - | chr4_3:221804-221823 | Msa0623040:intron | 20.0% |
| !!! | AATGCTCTGTTTTTTTTTTT+TGG | - | chr4_3:221858-221877 | Msa0623040:intron | 20.0% |
| !!! | AATTGATTTTTCATGTGTTA+CGG | - | chr4_3:222146-222165 | Msa0623040:intron | 20.0% |
| !!! | TAGTTGGATTTTTAATAATG+AGG | - | chr4_3:222794-222813 | Msa0623040:CDS | 20.0% |
| !! | AGTTTGAATATGCATTGTTT+TGG | + | chr4_3:220684-220703 | None:intergenic | 25.0% |
| !!! | TTGAAAATTTCTAGCTTTTC+TGG | + | chr4_3:220854-220873 | None:intergenic | 25.0% |
| !! | TTTTCAAATCACTAGAAAAC+TGG | - | chr4_3:220867-220886 | Msa0623040:three_prime_UTR | 25.0% |
| ! | TTTCAAATCACTAGAAAACT+GGG | - | chr4_3:220868-220887 | Msa0623040:three_prime_UTR | 25.0% |
| ! | TGATCAGTAAATTCATCAAA+TGG | + | chr4_3:220974-220993 | None:intergenic | 25.0% |
| ! | ATTTGATGAATTTACTGATC+AGG | - | chr4_3:220973-220992 | Msa0623040:exon | 25.0% |
| !! | TTATTTGTATCTTTCTGGAA+GGG | - | chr4_3:221213-221232 | Msa0623040:CDS | 25.0% |
| ! | AAAACTGTTCAGTATCTTAT+TGG | - | chr4_3:221256-221275 | Msa0623040:CDS | 25.0% |
| !! | TGTACATTTTATTGCAATCT+AGG | - | chr4_3:221344-221363 | Msa0623040:CDS | 25.0% |
| ! | ATCTATCTAAATAGAATCCT+CGG | - | chr4_3:221766-221785 | Msa0623040:intron | 25.0% |
| ! | CAAAACAGAACATTATGTTT+CGG | + | chr4_3:221885-221904 | None:intergenic | 25.0% |
| ! | TCATGTAACATAAAAGTGAT+GGG | + | chr4_3:221954-221973 | None:intergenic | 25.0% |
| ! | TTCATGTAACATAAAAGTGA+TGG | + | chr4_3:221955-221974 | None:intergenic | 25.0% |
| !! | ACTTTTATGTTACATGAATG+AGG | - | chr4_3:221957-221976 | Msa0623040:intron | 25.0% |
| ! | ACTACTTAGAAGAAAAGTTT+CGG | + | chr4_3:222066-222085 | None:intergenic | 25.0% |
| !!! | TAATTGATTTTTCACATGTG+TGG | - | chr4_3:222109-222128 | Msa0623040:intron | 25.0% |
| !!! | AATTGATTTTTCACATGTGT+GGG | - | chr4_3:222110-222129 | Msa0623040:intron | 25.0% |
| !! | GTAGACATTATTTTCAACTT+AGG | + | chr4_3:222216-222235 | None:intergenic | 25.0% |
| !!! | TTTTGGAGTTTTTAATCGAA+CGG | - | chr4_3:222628-222647 | Msa0623040:CDS | 25.0% |
| !!! | ATGTATTTTGACTCTAATGT+TGG | - | chr4_3:222969-222988 | Msa0623040:CDS | 25.0% |
| ! | TTTTGGATTTGATACTAGCT+AGG | + | chr4_3:220667-220686 | None:intergenic | 30.0% |
| TTAAGACACTTCCATTAACA+TGG | - | chr4_3:220714-220733 | Msa0623040:three_prime_UTR | 30.0% | |
| ! | TTTGGAATGTTCCATGTTAA+TGG | + | chr4_3:220728-220747 | None:intergenic | 30.0% |
| !!! | AAAATTTCTAGCTTTTCTGG+TGG | + | chr4_3:220851-220870 | None:intergenic | 30.0% |
| AATTCATCAAATGGCAATGA+AGG | + | chr4_3:220965-220984 | None:intergenic | 30.0% | |
| AACACAACAAAATACTCATC+AGG | + | chr4_3:221031-221050 | None:intergenic | 30.0% | |
| !! | TGATGAGTATTTTGTTGTGT+TGG | - | chr4_3:221030-221049 | Msa0623040:CDS | 30.0% |
| AGGACTTATTTGTATCTTTC+TGG | - | chr4_3:221208-221227 | Msa0623040:CDS | 30.0% | |
| CTTATTTGTATCTTTCTGGA+AGG | - | chr4_3:221212-221231 | Msa0623040:CDS | 30.0% | |
| !! | TTAAAGTGATGGATAGTAGT+AGG | - | chr4_3:221421-221440 | Msa0623040:CDS | 30.0% |
| ! | GCAACATTGTAATTTGTAAG+AGG | + | chr4_3:221625-221644 | None:intergenic | 30.0% |
| ATGTAACATAAAAGTGATGG+GGG | + | chr4_3:221952-221971 | None:intergenic | 30.0% | |
| CATGTAACATAAAAGTGATG+GGG | + | chr4_3:221953-221972 | None:intergenic | 30.0% | |
| !! | ACATTGCATTTTGTTTGCAT+TGG | - | chr4_3:222234-222253 | Msa0623040:intron | 30.0% |
| TGTATACAAATCCCAAGTAT+GGG | + | chr4_3:222284-222303 | None:intergenic | 30.0% | |
| CAAAATATCAGCGTAATCAT+TGG | + | chr4_3:222613-222632 | None:intergenic | 30.0% | |
| ! | CAATGATTACGCTGATATTT+TGG | - | chr4_3:222611-222630 | Msa0623040:CDS | 30.0% |
| ACTAATCTTGACACTAAACA+AGG | - | chr4_3:222897-222916 | Msa0623040:CDS | 30.0% | |
| ! | TGAAAAATAGTTGGGACTTT+TGG | - | chr4_3:223038-223057 | Msa0623040:CDS | 30.0% |
| !!! | GTTTTGGAGATTTTTAGCGA+CGG | + | chr4_3:220818-220837 | None:intergenic | 35.0% |
| TGAATTTACTGATCAGGTGA+AGG | - | chr4_3:220979-220998 | Msa0623040:exon | 35.0% | |
| CAACAAAATACTCATCAGGA+AGG | + | chr4_3:221027-221046 | None:intergenic | 35.0% | |
| !! | GAGTATTTTGTTGTGTTGGT+TGG | - | chr4_3:221034-221053 | Msa0623040:CDS | 35.0% |
| TTGATCATACTCTGATACGT+CGG | + | chr4_3:221085-221104 | None:intergenic | 35.0% | |
| ACGTATCAGAGTATGATCAA+TGG | - | chr4_3:221085-221104 | Msa0623040:CDS | 35.0% | |
| ! | AGTATGATCAATGGTCTTGA+TGG | - | chr4_3:221094-221113 | Msa0623040:CDS | 35.0% |
| ACTGCTGAAGAAAATAGACA+TGG | - | chr4_3:221175-221194 | Msa0623040:CDS | 35.0% | |
| CTGCTGAAGAAAATAGACAT+GGG | - | chr4_3:221176-221195 | Msa0623040:CDS | 35.0% | |
| TGCTGAAGAAAATAGACATG+GGG | - | chr4_3:221177-221196 | Msa0623040:CDS | 35.0% | |
| ACAGAAAACAACCCATACTT+GGG | - | chr4_3:222270-222289 | Msa0623040:intron | 35.0% | |
| GTGTATACAAATCCCAAGTA+TGG | + | chr4_3:222285-222304 | None:intergenic | 35.0% | |
| ATTTGTATCACACGGAAACA+CGG | - | chr4_3:222326-222345 | Msa0623040:intron | 35.0% | |
| TTTCTCCATCATATCACCAA+TGG | + | chr4_3:222493-222512 | None:intergenic | 35.0% | |
| GGAGAAAAAAATCACAATGC+CGG | - | chr4_3:222506-222525 | Msa0623040:intron | 35.0% | |
| GGAAAAGCTTGAAGGATTAA+CGG | - | chr4_3:222659-222678 | Msa0623040:CDS | 35.0% | |
| GAAAAGCTTGAAGGATTAAC+GGG | - | chr4_3:222660-222679 | Msa0623040:CDS | 35.0% | |
| AGACTAGAGATTAAGAGCTA+AGG | - | chr4_3:222857-222876 | Msa0623040:CDS | 35.0% | |
| GACTAGAGATTAAGAGCTAA+GGG | - | chr4_3:222858-222877 | Msa0623040:CDS | 35.0% | |
| TGACACTAAACAAGGAACTT+TGG | - | chr4_3:222905-222924 | Msa0623040:CDS | 35.0% | |
| GACACTAAACAAGGAACTTT+GGG | - | chr4_3:222906-222925 | Msa0623040:CDS | 35.0% | |
| !! | TTTTGACTCTAATGTTGGAG+AGG | - | chr4_3:222974-222993 | Msa0623040:CDS | 35.0% |
| TTGCGTGGATGAAAAATAGT+TGG | - | chr4_3:223029-223048 | Msa0623040:CDS | 35.0% | |
| TGCGTGGATGAAAAATAGTT+GGG | - | chr4_3:223030-223049 | Msa0623040:CDS | 35.0% | |
| !!! | ATTTTGGTGGTGGTAATAGG+TGG | + | chr4_3:220775-220794 | None:intergenic | 40.0% |
| !!! | TGGATTTTGGTGGTGGTAAT+AGG | + | chr4_3:220778-220797 | None:intergenic | 40.0% |
| TTTACCACTACTAAAGCCAG+TGG | - | chr4_3:220904-220923 | Msa0623040:three_prime_UTR | 40.0% | |
| CAAATGGCAATGAAGGATCA+GGG | + | chr4_3:220958-220977 | None:intergenic | 40.0% | |
| TCAAATGGCAATGAAGGATC+AGG | + | chr4_3:220959-220978 | None:intergenic | 40.0% | |
| !! | TGTTGTGTTGGTTGGTGATA+TGG | - | chr4_3:221042-221061 | Msa0623040:CDS | 40.0% |
| !! | ATCAATGGTCTTGATGGTGT+TGG | - | chr4_3:221100-221119 | Msa0623040:CDS | 40.0% |
| ! | ATAGACATGGGGATTTGCTT+AGG | - | chr4_3:221188-221207 | Msa0623040:CDS | 40.0% |
| !! | TCTTTCTGGAAGGGTTGATA+TGG | - | chr4_3:221222-221241 | Msa0623040:CDS | 40.0% |
| GTTCAGTATCTTATTGGAGC+TGG | - | chr4_3:221262-221281 | Msa0623040:CDS | 40.0% | |
| !! | GGATAGTAGTAGGAGTGTTT+AGG | - | chr4_3:221431-221450 | Msa0623040:CDS | 40.0% |
| !! | TAGTAGTAGGAGTGTTTAGG+TGG | - | chr4_3:221434-221453 | Msa0623040:CDS | 40.0% |
| !! | GCATTTTGTTTGCATTGGAC+AGG | - | chr4_3:222239-222258 | Msa0623040:intron | 40.0% |
| GACAGAAAACAACCCATACT+TGG | - | chr4_3:222269-222288 | Msa0623040:intron | 40.0% | |
| ATACAAATGTTGCTCGCTCT+TGG | + | chr4_3:222314-222333 | None:intergenic | 40.0% | |
| CGAGCAACATTTGTATCACA+CGG | - | chr4_3:222318-222337 | Msa0623040:intron | 40.0% | |
| ! | GTTCTCATGACGCTTTTCAT+CGG | + | chr4_3:222412-222431 | None:intergenic | 40.0% |
| ! | GGTCTTGTCCATCATACATA+AGG | + | chr4_3:222536-222555 | None:intergenic | 40.0% |
| ! | TGGAGTTTTTAATCGAACGG+TGG | - | chr4_3:222631-222650 | Msa0623040:CDS | 40.0% |
| TTTAATCGAACGGTGGAGAT+TGG | - | chr4_3:222638-222657 | Msa0623040:CDS | 40.0% | |
| TGGAGATTGGAAAAGCTTGA+AGG | - | chr4_3:222651-222670 | Msa0623040:CDS | 40.0% | |
| ! | ATTAACGGGTGAGGGAAAAA+GGG | - | chr4_3:222674-222693 | Msa0623040:CDS | 40.0% |
| TCTTGCAACCTTCTAATCCT+AGG | + | chr4_3:222726-222745 | None:intergenic | 40.0% | |
| GATTAGAAGGTTGCAAGAGA+GGG | - | chr4_3:222728-222747 | Msa0623040:CDS | 40.0% | |
| CTCGTAAGATGAAACCACAT+GGG | - | chr4_3:222763-222782 | Msa0623040:CDS | 40.0% | |
| TCGTAAGATGAAACCACATG+GGG | - | chr4_3:222764-222783 | Msa0623040:CDS | 40.0% | |
| AAACAAGGAACTTTGGGTGA+TGG | - | chr4_3:222912-222931 | Msa0623040:CDS | 40.0% | |
| AACAAGGAACTTTGGGTGAT+GGG | - | chr4_3:222913-222932 | Msa0623040:CDS | 40.0% | |
| CTCTAATGTTGGAGAGGATA+TGG | - | chr4_3:222980-222999 | Msa0623040:CDS | 40.0% | |
| ! | GATGTTGTTACTTGTTTGCG+TGG | - | chr4_3:223014-223033 | Msa0623040:CDS | 40.0% |
| !!! | TTGGAGATTTTTAGCGACGG+TGG | + | chr4_3:220815-220834 | None:intergenic | 45.0% |
| !! | CTTTTCTGGTGGCATTGAGT+GGG | + | chr4_3:220840-220859 | None:intergenic | 45.0% |
| !! | TGTTCCACTGGCTTTAGTAG+TGG | + | chr4_3:220911-220930 | None:intergenic | 45.0% |
| TAAAGCCAGTGGAACAATGC+TGG | - | chr4_3:220915-220934 | Msa0623040:three_prime_UTR | 45.0% | |
| GGATCAGGGAGAAAATTCTG+TGG | + | chr4_3:220944-220963 | None:intergenic | 45.0% | |
| !! | GTTGGTTGGTGATATGGTGA+CGG | - | chr4_3:221048-221067 | Msa0623040:CDS | 45.0% |
| !! | TCTTGATGGTGTTGGTGATG+AGG | - | chr4_3:221108-221127 | Msa0623040:CDS | 45.0% |
| GTATCTTATTGGAGCTGGCA+TGG | - | chr4_3:221267-221286 | Msa0623040:CDS | 45.0% | |
| CAACATATGCGATCAAACCG+AGG | + | chr4_3:221824-221843 | None:intergenic | 45.0% | |
| !! | TATGGGTTGTTTTCTGTCCC+GGG | + | chr4_3:222267-222286 | None:intergenic | 45.0% |
| !! | GTATGGGTTGTTTTCTGTCC+CGG | + | chr4_3:222268-222287 | None:intergenic | 45.0% |
| ! | GCTAGCCATTGGTGATATGA+TGG | - | chr4_3:222485-222504 | Msa0623040:intron | 45.0% |
| CCATCATACATAAGGTGTGC+CGG | + | chr4_3:222528-222547 | None:intergenic | 45.0% | |
| ! | CGAAGTGCTCGAATAGCTTA+GGG | + | chr4_3:222557-222576 | None:intergenic | 45.0% |
| TAAGCTATTCGAGCACTTCG+CGG | - | chr4_3:222557-222576 | Msa0623040:CDS | 45.0% | |
| ATCATTGGCCGTGTAAACTC+CGG | + | chr4_3:222598-222617 | None:intergenic | 45.0% | |
| ! | CTTGAAGGATTAACGGGTGA+GGG | - | chr4_3:222666-222685 | Msa0623040:CDS | 45.0% |
| ! | GATTAACGGGTGAGGGAAAA+AGG | - | chr4_3:222673-222692 | Msa0623040:CDS | 45.0% |
| GGTTAGCACCTAGGATTAGA+AGG | - | chr4_3:222715-222734 | Msa0623040:CDS | 45.0% | |
| GGATTAGAAGGTTGCAAGAG+AGG | - | chr4_3:222727-222746 | Msa0623040:CDS | 45.0% | |
| GCTCGTAAGATGAAACCACA+TGG | - | chr4_3:222762-222781 | Msa0623040:CDS | 45.0% | |
| CAACTAAACTTGACCCCATG+TGG | + | chr4_3:222780-222799 | None:intergenic | 45.0% | |
| CACATGGGGTCAAGTTTAGT+TGG | - | chr4_3:222778-222797 | Msa0623040:CDS | 45.0% | |
| !!! | TTTAATTTCATTTAATATTT+TGG | - | chr4_3:221310-221329 | Msa0623040:CDS | 5.0% |
| !!! | AAAAGATTTATTTTTTTTTA+GGG | + | chr4_3:221698-221717 | None:intergenic | 5.0% |
| !!! | AAAAAGATTTATTTTTTTTT+AGG | + | chr4_3:221699-221718 | None:intergenic | 5.0% |
| !!! | GGTCGGTGGTTGATGGTTTT+TGG | + | chr4_3:220746-220765 | None:intergenic | 50.0% |
| !! | TTGGTGGTGGTAATAGGTGG+CGG | + | chr4_3:220772-220791 | None:intergenic | 50.0% |
| !!! | GTGATGGTGGATTTTGGTGG+TGG | + | chr4_3:220785-220804 | None:intergenic | 50.0% |
| !!! | GTGGTGATGGTGGATTTTGG+TGG | + | chr4_3:220788-220807 | None:intergenic | 50.0% |
| !!! | GTGGTGGTGATGGTGGATTT+TGG | + | chr4_3:220791-220810 | None:intergenic | 50.0% |
| !!! | GATTTTTAGCGACGGTGGTG+TGG | + | chr4_3:220810-220829 | None:intergenic | 50.0% |
| !! | TGGTGGCATTGAGTGGGTTT+TGG | + | chr4_3:220834-220853 | None:intergenic | 50.0% |
| !! | GCTTTTCTGGTGGCATTGAG+TGG | + | chr4_3:220841-220860 | None:intergenic | 50.0% |
| !! | GATGGTGTTGGTGATGAGGT+TGG | - | chr4_3:221112-221131 | Msa0623040:CDS | 50.0% |
| AGTCCAAGCTCGTGTCCAAA+CGG | + | chr4_3:221158-221177 | None:intergenic | 50.0% | |
| !! | ATGGGTTGTTTTCTGTCCCG+GGG | + | chr4_3:222266-222285 | None:intergenic | 50.0% |
| ! | CGTCGAGAAGCTTCTAGAAG+TGG | - | chr4_3:222446-222465 | Msa0623040:intron | 50.0% |
| ATGGCTAGCATTGCTCCTGT+GGG | + | chr4_3:222474-222493 | None:intergenic | 50.0% | |
| AATGGCTAGCATTGCTCCTG+TGG | + | chr4_3:222475-222494 | None:intergenic | 50.0% | |
| ACAGGAGCAATGCTAGCCAT+TGG | - | chr4_3:222474-222493 | Msa0623040:intron | 50.0% | |
| CCGGCACACCTTATGTATGA+TGG | - | chr4_3:222525-222544 | Msa0623040:CDS | 50.0% | |
| ! | GCGAAGTGCTCGAATAGCTT+AGG | + | chr4_3:222558-222577 | None:intergenic | 50.0% |
| ! | GCTTGAAGGATTAACGGGTG+AGG | - | chr4_3:222665-222684 | Msa0623040:CDS | 50.0% |
| !! | TTGTGTGTGGGTTAGCACCT+AGG | - | chr4_3:222706-222725 | Msa0623040:CDS | 50.0% |
| ! | GTAATAGGTGGCGGTGTGGT+CGG | + | chr4_3:220763-220782 | None:intergenic | 55.0% |
| ! | TTTTAGCGACGGTGGTGTGG+TGG | + | chr4_3:220807-220826 | None:intergenic | 55.0% |
| GTTTGCATTGGACAGGACCC+CGG | - | chr4_3:222246-222265 | Msa0623040:intron | 55.0% | |
| TTTGCATTGGACAGGACCCC+GGG | - | chr4_3:222247-222266 | Msa0623040:intron | 55.0% | |
| ACGGCTCGCTTAGCGAAAGA+AGG | - | chr4_3:222345-222364 | Msa0623040:intron | 55.0% | |
| GCTCGCTTAGCGAAAGAAGG+CGG | - | chr4_3:222348-222367 | Msa0623040:intron | 55.0% | |
| !! | ACGCTTTTCATCGGCTGCGA+TGG | + | chr4_3:222403-222422 | None:intergenic | 55.0% |
| ! | CTTCTAGAAGTGGACCCCAC+AGG | - | chr4_3:222456-222475 | Msa0623040:intron | 55.0% |
| TGGCTAGCATTGCTCCTGTG+GGG | + | chr4_3:222473-222492 | None:intergenic | 55.0% | |
| ACAGCGCACCGGAGTTTACA+CGG | - | chr4_3:222587-222606 | Msa0623040:CDS | 55.0% | |
| ! | AGGGCGCAGGATTTTGTGTG+TGG | - | chr4_3:222693-222712 | Msa0623040:CDS | 55.0% |
| ! | GGGCGCAGGATTTTGTGTGT+GGG | - | chr4_3:222694-222713 | Msa0623040:CDS | 55.0% |
| !! | GGAACTTTGGGTGATGGGAG+TGG | - | chr4_3:222918-222937 | Msa0623040:CDS | 55.0% |
| ! | GGTGGTAATAGGTGGCGGTG+TGG | + | chr4_3:220767-220786 | None:intergenic | 60.0% |
| GGCTGCCAGCATTGTTCCAC+TGG | + | chr4_3:220923-220942 | None:intergenic | 60.0% | |
| GGTCCTTCGTGATCGCACGA+AGG | - | chr4_3:221000-221019 | Msa0623040:CDS | 60.0% | |
| GGTCCTTCGTGCGATCACGA+AGG | + | chr4_3:221006-221025 | None:intergenic | 60.0% | |
| TTGGTTCCAGTCCAAGCCCG+TGG | - | chr4_3:221131-221150 | Msa0623040:CDS | 60.0% | |
| TGGTTCCAGTCCAAGCCCGT+GGG | - | chr4_3:221132-221151 | Msa0623040:CDS | 60.0% | |
| CCACATATGCGCGCAAGCAC+TGG | + | chr4_3:222378-222397 | None:intergenic | 60.0% | |
| CCAGTGCTTGCGCGCATATG+TGG | - | chr4_3:222375-222394 | Msa0623040:intron | 60.0% | |
| GCGGTGTGGTCGGTGGTTGA+TGG | + | chr4_3:220753-220772 | None:intergenic | 65.0% | |
| ! | ATAGGTGGCGGTGTGGTCGG+TGG | + | chr4_3:220760-220779 | None:intergenic | 65.0% |
| !! | CGGTGGTGTGGTGGTGATGG+TGG | + | chr4_3:220798-220817 | None:intergenic | 65.0% |
| ! | CGACGGTGGTGTGGTGGTGA+TGG | + | chr4_3:220801-220820 | None:intergenic | 65.0% |
| CTCGTGTCCAAACGGCCCAC+GGG | + | chr4_3:221150-221169 | None:intergenic | 65.0% | |
| GCTCGTGTCCAAACGGCCCA+CGG | + | chr4_3:221151-221170 | None:intergenic | 65.0% | |
| GGGCCGTTTGGACACGAGCT+TGG | - | chr4_3:221152-221171 | Msa0623040:CDS | 65.0% | |
| ATTCGAGCACTTCGCGGCCG+TGG | - | chr4_3:222563-222582 | Msa0623040:CDS | 65.0% | |
| AACTCCGGTGCGCTGTGCCA+CGG | + | chr4_3:222583-222602 | None:intergenic | 65.0% | |
| ! | GGGTGAGGGAAAAAGGGCGC+AGG | - | chr4_3:222680-222699 | Msa0623040:CDS | 65.0% |
| AACGGCCCACGGGCTTGGAC+TGG | + | chr4_3:221140-221159 | None:intergenic | 70.0% | |
| GTCCAAGCCCGTGGGCCGTT+TGG | - | chr4_3:221140-221159 | Msa0623040:CDS | 70.0% | |
| GTCCAAACGGCCCACGGGCT+TGG | + | chr4_3:221145-221164 | None:intergenic | 70.0% | |
| ! | GCGGCCGTGGCACAGCGCAC+CGG | - | chr4_3:222576-222595 | Msa0623040:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 220649 | 223158 | 220649 | ID=Msa0623040;Name=Msa0623040 |
| chr4_3 | mRNA | 220649 | 223158 | 220649 | ID=Msa0623040-mRNA-1;Parent=Msa0623040;Name=Msa0623040-mRNA-1;_AED=0.03;_eAED=0.03;_QI=40|1|1|1|1|1|2|331|388 |
| chr4_3 | exon | 220649 | 221546 | 220649 | ID=Msa0623040-mRNA-1:exon:23;Parent=Msa0623040-mRNA-1 |
| chr4_3 | exon | 222519 | 223158 | 222519 | ID=Msa0623040-mRNA-1:exon:22;Parent=Msa0623040-mRNA-1 |
| chr4_3 | five_prime_UTR | 223119 | 223158 | 223119 | ID=Msa0623040-mRNA-1:five_prime_utr;Parent=Msa0623040-mRNA-1 |
| chr4_3 | CDS | 222519 | 223118 | 222519 | ID=Msa0623040-mRNA-1:cds;Parent=Msa0623040-mRNA-1 |
| chr4_3 | CDS | 220980 | 221546 | 220980 | ID=Msa0623040-mRNA-1:cds;Parent=Msa0623040-mRNA-1 |
| chr4_3 | three_prime_UTR | 220649 | 220979 | 220649 | ID=Msa0623040-mRNA-1:three_prime_utr;Parent=Msa0623040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
