AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0876230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0876230 MtrunA17_Chr6g0457431 92.949 156 11 0 1 156 1 156 6.35e-108 309
Msa0876230 MtrunA17_Chr7g0215281 60.000 310 83 9 1 278 1 301 1.45e-106 311
Msa0876230 MtrunA17_Chr6g0469271 48.018 227 94 8 1 208 1 222 2.35e-63 199
Msa0876230 MtrunA17_Chr6g0470651 44.493 227 102 8 1 208 1 222 1.69e-55 179
Msa0876230 MtrunA17_Chr4g0053911 53.472 144 64 1 3 146 1 141 1.16e-53 174
Msa0876230 MtrunA17_Chr6g0470631 44.690 226 95 10 1 204 1 218 1.76e-53 173
Msa0876230 MtrunA17_Chr5g0401401 53.623 138 54 1 3 140 1 128 1.57e-50 166
Msa0876230 MtrunA17_Chr1g0209841 46.632 193 78 7 1 182 1 179 7.10e-50 164
Msa0876230 MtrunA17_Chr1g0207471 60.000 105 42 0 3 107 1 105 2.96e-45 151
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0876230 AT3G02550.1 53.069 277 113 5 1 274 1 263 5.22e-91 271
Msa0876230 AT1G67100.1 74.510 153 30 3 1 150 1 147 7.77e-79 238
Msa0876230 AT1G68510.1 49.200 250 101 5 1 241 1 233 1.94e-71 219
Msa0876230 AT4G37540.1 63.964 111 40 0 3 113 1 111 1.82e-50 166
Msa0876230 AT3G49940.1 63.636 110 40 0 3 112 1 110 2.38e-50 166
Msa0876230 AT5G67420.2 60.909 110 43 0 3 112 1 110 8.03e-50 165
Msa0876230 AT5G67420.1 60.909 110 43 0 3 112 1 110 8.03e-50 165

Find 104 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGTGACGATTCATGGCTTT+TGG 0.177646 6_1:+14050923 None:intergenic
CGGCTTATATATGAGACTTT+TGG 0.201019 6_1:-14050592 Msa0876230:three_prime_UTR
TGGGTTAACCTTTGTGAATT+AGG 0.207889 6_1:-14050486 Msa0876230:three_prime_UTR
AGGATCGTGAACCCTATTTA+TGG 0.235139 6_1:-14051230 Msa0876230:CDS
GGGTTAACCTTTGTGAATTA+GGG 0.241553 6_1:-14050485 Msa0876230:three_prime_UTR
AGACCCACTGACCCATAAAT+AGG 0.242504 6_1:+14051218 None:intergenic
GCTTGACCTTTCAGCTTAAA+TGG 0.250077 6_1:-14050637 Msa0876230:exon
TTTGGACCGGTCCACTTCTT+TGG 0.257677 6_1:+14050941 None:intergenic
ATTGCTTGGCTTCGGCTTCA+TGG 0.277744 6_1:+14050995 None:intergenic
ACTCCGACTCATCGTGAAAA+AGG 0.289902 6_1:+14050850 None:intergenic
AATTAGGGGATGTACAAATT+TGG 0.292747 6_1:-14050470 Msa0876230:three_prime_UTR
CTCATCAACCTCATCAATTC+TGG 0.302253 6_1:-14052087 Msa0876230:CDS
GGATTGTAGTGTTTCTTCTA+AGG 0.303138 6_1:-14050670 Msa0876230:CDS
GTCCACTTCTTTGGCCGAAT+TGG 0.320719 6_1:+14050950 None:intergenic
AATGAAGTTGGGTCCGGTTC+AGG 0.340569 6_1:-14050975 Msa0876230:CDS
ATGGGGTTGGCTTGGAGCTT+AGG 0.342652 6_1:-14050761 Msa0876230:CDS
TTCCAAGAAAATTAAAATAA+AGG 0.346101 6_1:+14050526 None:intergenic
GCTGGCTCAGTGACGATTCA+TGG 0.360828 6_1:+14050916 None:intergenic
CCGGACCCAACTTCATTGCT+TGG 0.374581 6_1:+14050981 None:intergenic
TGACACGTGGCGTATGTCAT+AGG 0.376474 6_1:+14051076 None:intergenic
GTTTCTTCTAAGGTGGAGCT+TGG 0.384452 6_1:-14050660 Msa0876230:CDS
TTGTAACATAAGACCATGTT+TGG 0.384670 6_1:-14052181 Msa0876230:CDS
GAAGAGGAAAATTGTGTTGA+AGG 0.384836 6_1:-14050691 Msa0876230:CDS
GTTGGCTTGGAGCTTAGGCT+TGG 0.390460 6_1:-14050756 Msa0876230:CDS
GGCCGAATTGGACCCTGAAC+CGG 0.393613 6_1:+14050962 None:intergenic
TTTCTTCTAAGGTGGAGCTT+GGG 0.427968 6_1:-14050659 Msa0876230:CDS
CGGAGGAGACTAAGCAGGTT+AGG 0.436816 6_1:-14051040 Msa0876230:CDS
TGTGAGTGATGGGGTTGGCT+TGG 0.437221 6_1:-14050769 Msa0876230:CDS
TGAGCTGTTTGTGACTCAAT+CGG 0.437685 6_1:-14050612 Msa0876230:three_prime_UTR
CCAACTTCATTGCTTGGCTT+CGG 0.439036 6_1:+14050987 None:intergenic
GTAGCATTAGCTTGTGATTG+AGG 0.440070 6_1:+14052144 None:intergenic
GACCCACTGACCCATAAATA+GGG 0.448799 6_1:+14051219 None:intergenic
GGATCGTGAACCCTATTTAT+GGG 0.457021 6_1:-14051229 Msa0876230:CDS
CTTTCCTTAGCTTCTGACTC+AGG 0.457661 6_1:+14050822 None:intergenic
TGGTTGGTATGTAGAGGAAA+AGG 0.470899 6_1:-14050450 Msa0876230:three_prime_UTR
GTCCGGTTCAGGGTCCAATT+CGG 0.473428 6_1:-14050964 Msa0876230:CDS
CATTGCTCTATGAGGCTTGT+GGG 0.474610 6_1:-14051253 Msa0876230:CDS
CTGAGGAAGGTGTGAGTGAT+GGG 0.489690 6_1:-14050779 Msa0876230:CDS
AAATTCATAAACCAAAGAAA+AGG 0.497129 6_1:-14052268 Msa0876230:five_prime_UTR
ATGAAGTTGGGTCCGGTTCA+GGG 0.498200 6_1:-14050974 Msa0876230:CDS
CGAAGCCAAGCAATGAAGTT+GGG 0.505704 6_1:-14050986 Msa0876230:CDS
TTTCACTATCTTTACCCGGC+TGG 0.506084 6_1:+14050898 None:intergenic
AAAATGAGAATGAGTTGTAA+TGG 0.507722 6_1:-14052237 Msa0876230:CDS
GCTTCGGAGACTGCTGAAGA+TGG 0.507959 6_1:-14051119 Msa0876230:CDS
TTGTAGTGTTTCTTCTAAGG+TGG 0.513507 6_1:-14050667 Msa0876230:CDS
CGGAGACTGCTGAAGATGGA+AGG 0.513883 6_1:-14051115 Msa0876230:CDS
CCGAAGCCAAGCAATGAAGT+TGG 0.516761 6_1:-14050987 Msa0876230:CDS
AGGGGATGTACAAATTTGGT+TGG 0.517963 6_1:-14050466 Msa0876230:three_prime_UTR
CAAATTTGGTTGGTATGTAG+AGG 0.520083 6_1:-14050456 Msa0876230:three_prime_UTR
TGAGTCAGAAGCTAAGGAAA+GGG 0.520208 6_1:-14050820 Msa0876230:CDS
GGTTCTGAAAATCTTCGTCC+TGG 0.520270 6_1:-14052066 Msa0876230:intron
AATTCATAAACCAAAGAAAA+GGG 0.520527 6_1:-14052267 Msa0876230:five_prime_UTR
CCGGGTAAAGATAGTGAAAG+TGG 0.523543 6_1:-14050894 Msa0876230:CDS
CCACTTTCACTATCTTTACC+CGG 0.526515 6_1:+14050894 None:intergenic
TGAACCTGAGTCAGAAGCTA+AGG 0.528371 6_1:-14050826 Msa0876230:CDS
GCCGATCACTCCGATAGCTT+CGG 0.532895 6_1:-14051135 Msa0876230:CDS
GTCCAATTCGGCCAAAGAAG+TGG 0.535373 6_1:-14050952 Msa0876230:CDS
CCAAGCAATGAAGTTGGGTC+CGG 0.535760 6_1:-14050981 Msa0876230:CDS
AAGGAAAGGGGTCGAGCTGA+GGG 0.536234 6_1:-14050807 Msa0876230:CDS
GAATCGTCACTGAGCCAGCC+GGG 0.536288 6_1:-14050912 Msa0876230:CDS
GAAGGTGTGAGTGATGGGGT+TGG 0.537576 6_1:-14050774 Msa0876230:CDS
TCATTGCTCTATGAGGCTTG+TGG 0.539310 6_1:-14051254 Msa0876230:CDS
GCTTAGGCTTGGTATCGAAC+CGG 0.540510 6_1:-14050745 Msa0876230:CDS
TAGTGAAAGTGGGGTTTCTG+TGG 0.541364 6_1:-14050883 Msa0876230:CDS
CTCAAGCCATTTAAGCTGAA+AGG 0.544901 6_1:+14050631 None:intergenic
TGAATCGTCACTGAGCCAGC+CGG 0.545043 6_1:-14050913 Msa0876230:CDS
CTTCATGGCTCGTCTGACGC+GGG 0.552027 6_1:+14051010 None:intergenic
TAAGGAAAGGGGTCGAGCTG+AGG 0.555280 6_1:-14050808 Msa0876230:CDS
CACTTGATCCATTCCAAACA+TGG 0.555522 6_1:+14052168 None:intergenic
GGAGACTGCTGAAGATGGAA+GGG 0.557606 6_1:-14051114 Msa0876230:CDS
ACATAAGACCATGTTTGGAA+TGG 0.560066 6_1:-14052176 Msa0876230:CDS
AACCCTATTTATGGGTCAGT+GGG 0.560507 6_1:-14051221 Msa0876230:CDS
CACTCACACCTTCCTCAGCT+CGG 0.561092 6_1:+14050784 None:intergenic
GCACCTCTGTCAAGCCGCTG+TGG 0.565125 6_1:-14051177 Msa0876230:CDS
CGGGTAAAGATAGTGAAAGT+GGG 0.566796 6_1:-14050893 Msa0876230:CDS
GCTTCATGGCTCGTCTGACG+CGG 0.567475 6_1:+14051009 None:intergenic
GCTGAGGAAGGTGTGAGTGA+TGG 0.567541 6_1:-14050780 Msa0876230:CDS
TCAGCAGTCTCCGAAGCTAT+CGG 0.568387 6_1:+14051125 None:intergenic
GCTGAGGGCCGAGCTGAGGA+AGG 0.571074 6_1:-14050792 Msa0876230:CDS
GAACCCTATTTATGGGTCAG+TGG 0.571330 6_1:-14051222 Msa0876230:CDS
TCGAGCTGAGGGCCGAGCTG+AGG 0.573810 6_1:-14050796 Msa0876230:CDS
CGTGTCAAAAGATGAGAACT+CGG 0.575305 6_1:-14051060 Msa0876230:CDS
TGCTCTATGAGGCTTGTGGG+AGG 0.581729 6_1:-14051250 Msa0876230:CDS
TTTCAGAACCAGAATTGATG+AGG 0.582737 6_1:+14052079 None:intergenic
GGTTAACCTTTGTGAATTAG+GGG 0.583589 6_1:-14050484 Msa0876230:three_prime_UTR
ATTCGGCCAAAGAAGTGGAC+CGG 0.592102 6_1:-14050947 Msa0876230:CDS
ATGTCATAGGACTTGAATGG+TGG 0.596079 6_1:+14051089 None:intergenic
CTGAGTCAGAAGCTAAGGAA+AGG 0.603785 6_1:-14050821 Msa0876230:CDS
CTTCCACAGCGGCTTGACAG+AGG 0.605443 6_1:+14051174 None:intergenic
GAGACTGCTGAAGATGGAAG+GGG 0.608390 6_1:-14051113 Msa0876230:CDS
ACATGGTTCCTATAAAGAAG+AGG 0.610391 6_1:-14050707 Msa0876230:CDS
GAACTCGGAGGAGACTAAGC+AGG 0.613697 6_1:-14051045 Msa0876230:CDS
GGTGTCACATGAGGAGTACA+TGG 0.616138 6_1:-14050724 Msa0876230:CDS
AGACTAAGCAGGTTAGGACT+CGG 0.616984 6_1:-14051034 Msa0876230:CDS
TATCGAACCGGTGTCACATG+AGG 0.633807 6_1:-14050733 Msa0876230:CDS
TGTCATAGGACTTGAATGGT+GGG 0.635932 6_1:+14051090 None:intergenic
ATGTACTCCTCATGTGACAC+CGG 0.646012 6_1:+14050726 None:intergenic
GAGTCAGAAGCTAAGGAAAG+GGG 0.646357 6_1:-14050819 Msa0876230:CDS
TGAGGAAGGTGTGAGTGATG+GGG 0.650116 6_1:-14050778 Msa0876230:CDS
CGTATGTCATAGGACTTGAA+TGG 0.652327 6_1:+14051086 None:intergenic
GTACATCCCCTAATTCACAA+AGG 0.666636 6_1:+14050478 None:intergenic
GGGTAAAGATAGTGAAAGTG+GGG 0.688058 6_1:-14050892 Msa0876230:CDS
CTTCAAAATGGCTTCCACAG+CGG 0.730689 6_1:+14051163 None:intergenic
GTCAAAAGATGAGAACTCGG+AGG 0.748310 6_1:-14051057 Msa0876230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTAAAAGAAAATTACA+AGG + chr6_1:14050885-14050904 None:intergenic 10.0%
!! TTACAATTAAAAACTATTAA+AGG + chr6_1:14050966-14050985 None:intergenic 10.0%
!!! AAAAAAATCTTAATTTTTCA+TGG + chr6_1:14051157-14051176 None:intergenic 10.0%
!! AAATTTAAAAGAAAATTACA+AGG + chr6_1:14050885-14050904 None:intergenic 10.0%
!! TTACAATTAAAAACTATTAA+AGG + chr6_1:14050966-14050985 None:intergenic 10.0%
!!! AAAAAAATCTTAATTTTTCA+TGG + chr6_1:14051157-14051176 None:intergenic 10.0%
!!! GTTAATTGTGTTTTTATTTT+TGG - chr6_1:14051047-14051066 Msa0876230:CDS 15.0%
!! AAAAAATTTACTACGATTTA+TGG - chr6_1:14051245-14051264 Msa0876230:CDS 15.0%
!! TTCCAAGAAAATTAAAATAA+AGG + chr6_1:14052192-14052211 None:intergenic 15.0%
!!! GTTAATTGTGTTTTTATTTT+TGG - chr6_1:14051047-14051066 Msa0876230:CDS 15.0%
!! AAAAAATTTACTACGATTTA+TGG - chr6_1:14051245-14051264 Msa0876230:CDS 15.0%
!! TTCCAAGAAAATTAAAATAA+AGG + chr6_1:14052192-14052211 None:intergenic 15.0%
!! AAATTCATAAACCAAAGAAA+AGG - chr6_1:14050447-14050466 Msa0876230:three_prime_UTR 20.0%
!! AATTCATAAACCAAAGAAAA+GGG - chr6_1:14050448-14050467 Msa0876230:three_prime_UTR 20.0%
!! GTACAAAATAAAAATTTACC+AGG + chr6_1:14050670-14050689 None:intergenic 20.0%
!! ACTATTAAAGGATAGAATTT+GGG + chr6_1:14050954-14050973 None:intergenic 20.0%
!! AACTATTAAAGGATAGAATT+TGG + chr6_1:14050955-14050974 None:intergenic 20.0%
!!! TGTTTTTATTTTTGGTACAT+AGG - chr6_1:14051055-14051074 Msa0876230:CDS 20.0%
!!! GAAAATCTTTAGAAGAAATT+TGG - chr6_1:14051130-14051149 Msa0876230:CDS 20.0%
!!! AATCGTAGTAAATTTTTTTC+AGG + chr6_1:14051243-14051262 None:intergenic 20.0%
!! ATGGAAAATGAGTAAATAAT+TGG + chr6_1:14051298-14051317 None:intergenic 20.0%
!!! AATTCTTTAGAAATTTGACA+TGG + chr6_1:14051364-14051383 None:intergenic 20.0%
!!! TGTCAAATTTCTAAAGAATT+TGG - chr6_1:14051364-14051383 Msa0876230:intron 20.0%
!!! GTCAAATTTCTAAAGAATTT+GGG - chr6_1:14051365-14051384 Msa0876230:intron 20.0%
!!! TCAAATTTCTAAAGAATTTG+GGG - chr6_1:14051366-14051385 Msa0876230:intron 20.0%
!!! ATTCATATTGATTGTGATTT+TGG - chr6_1:14051413-14051432 Msa0876230:intron 20.0%
!!! TGCCTTTATTTTAATTTTCT+TGG - chr6_1:14052187-14052206 Msa0876230:CDS 20.0%
!! AAATTCATAAACCAAAGAAA+AGG - chr6_1:14050447-14050466 Msa0876230:three_prime_UTR 20.0%
!! AATTCATAAACCAAAGAAAA+GGG - chr6_1:14050448-14050467 Msa0876230:three_prime_UTR 20.0%
!! GTACAAAATAAAAATTTACC+AGG + chr6_1:14050670-14050689 None:intergenic 20.0%
!! ACTATTAAAGGATAGAATTT+GGG + chr6_1:14050954-14050973 None:intergenic 20.0%
!! AACTATTAAAGGATAGAATT+TGG + chr6_1:14050955-14050974 None:intergenic 20.0%
!!! TGTTTTTATTTTTGGTACAT+AGG - chr6_1:14051055-14051074 Msa0876230:CDS 20.0%
!!! GAAAATCTTTAGAAGAAATT+TGG - chr6_1:14051130-14051149 Msa0876230:CDS 20.0%
!!! AATCGTAGTAAATTTTTTTC+AGG + chr6_1:14051243-14051262 None:intergenic 20.0%
!! ATGGAAAATGAGTAAATAAT+TGG + chr6_1:14051298-14051317 None:intergenic 20.0%
!!! AATTCTTTAGAAATTTGACA+TGG + chr6_1:14051364-14051383 None:intergenic 20.0%
!!! TGTCAAATTTCTAAAGAATT+TGG - chr6_1:14051364-14051383 Msa0876230:intron 20.0%
!!! GTCAAATTTCTAAAGAATTT+GGG - chr6_1:14051365-14051384 Msa0876230:intron 20.0%
!!! TCAAATTTCTAAAGAATTTG+GGG - chr6_1:14051366-14051385 Msa0876230:intron 20.0%
!!! ATTCATATTGATTGTGATTT+TGG - chr6_1:14051413-14051432 Msa0876230:intron 20.0%
!!! TGCCTTTATTTTAATTTTCT+TGG - chr6_1:14052187-14052206 Msa0876230:CDS 20.0%
! AAAATGAGAATGAGTTGTAA+TGG - chr6_1:14050478-14050497 Msa0876230:three_prime_UTR 25.0%
!!! GATGTAGAGTTTTAAGAAAA+GGG - chr6_1:14050500-14050519 Msa0876230:three_prime_UTR 25.0%
!! GTTTTTCTTGCTAAGTTTTA+TGG - chr6_1:14050595-14050614 Msa0876230:three_prime_UTR 25.0%
! TAGGGACATATATCTAAAAA+AGG + chr6_1:14050707-14050726 None:intergenic 25.0%
! TATCAACTTTAGTTACCTTT+CGG + chr6_1:14051218-14051237 None:intergenic 25.0%
! AAAATAACGAGTACAAAACA+TGG + chr6_1:14051317-14051336 None:intergenic 25.0%
! AGAAATTTGACATGGAATTA+AGG + chr6_1:14051356-14051375 None:intergenic 25.0%
!! ACAATTTTCCTCTTCTTTAT+AGG + chr6_1:14052019-14052038 None:intergenic 25.0%
!!! AACTTTTCTCCTCTATTTTT+GGG - chr6_1:14052210-14052229 Msa0876230:CDS 25.0%
! AAAATGAGAATGAGTTGTAA+TGG - chr6_1:14050478-14050497 Msa0876230:three_prime_UTR 25.0%
!!! GATGTAGAGTTTTAAGAAAA+GGG - chr6_1:14050500-14050519 Msa0876230:three_prime_UTR 25.0%
!! GTTTTTCTTGCTAAGTTTTA+TGG - chr6_1:14050595-14050614 Msa0876230:three_prime_UTR 25.0%
! TAGGGACATATATCTAAAAA+AGG + chr6_1:14050707-14050726 None:intergenic 25.0%
! TATCAACTTTAGTTACCTTT+CGG + chr6_1:14051218-14051237 None:intergenic 25.0%
! AAAATAACGAGTACAAAACA+TGG + chr6_1:14051317-14051336 None:intergenic 25.0%
! AGAAATTTGACATGGAATTA+AGG + chr6_1:14051356-14051375 None:intergenic 25.0%
!! ACAATTTTCCTCTTCTTTAT+AGG + chr6_1:14052019-14052038 None:intergenic 25.0%
!!! AACTTTTCTCCTCTATTTTT+GGG - chr6_1:14052210-14052229 Msa0876230:CDS 25.0%
! TTTGATTCAACCCTTTTCTT+TGG + chr6_1:14050461-14050480 None:intergenic 30.0%
!!! GGATGTAGAGTTTTAAGAAA+AGG - chr6_1:14050499-14050518 Msa0876230:three_prime_UTR 30.0%
TTGTAACATAAGACCATGTT+TGG - chr6_1:14050534-14050553 Msa0876230:three_prime_UTR 30.0%
!!! TACAAGGTTTTAGATTTGAG+AGG + chr6_1:14050869-14050888 None:intergenic 30.0%
! GAACTTTTCTCCTCTATTTT+TGG - chr6_1:14052209-14052228 Msa0876230:CDS 30.0%
AAAGGTTAACCCAAAAATAG+AGG + chr6_1:14052222-14052241 None:intergenic 30.0%
AATTAGGGGATGTACAAATT+TGG - chr6_1:14052245-14052264 Msa0876230:exon 30.0%
! TTTGATTCAACCCTTTTCTT+TGG + chr6_1:14050461-14050480 None:intergenic 30.0%
!!! GGATGTAGAGTTTTAAGAAA+AGG - chr6_1:14050499-14050518 Msa0876230:three_prime_UTR 30.0%
TTGTAACATAAGACCATGTT+TGG - chr6_1:14050534-14050553 Msa0876230:three_prime_UTR 30.0%
!!! TACAAGGTTTTAGATTTGAG+AGG + chr6_1:14050869-14050888 None:intergenic 30.0%
! GAACTTTTCTCCTCTATTTT+TGG - chr6_1:14052209-14052228 Msa0876230:CDS 30.0%
AAAGGTTAACCCAAAAATAG+AGG + chr6_1:14052222-14052241 None:intergenic 30.0%
AATTAGGGGATGTACAAATT+TGG - chr6_1:14052245-14052264 Msa0876230:exon 30.0%
ACATAAGACCATGTTTGGAA+TGG - chr6_1:14050539-14050558 Msa0876230:three_prime_UTR 35.0%
TTTCAGAACCAGAATTGATG+AGG + chr6_1:14050639-14050658 None:intergenic 35.0%
ATATGTCCCTATGATCTATG+TGG - chr6_1:14050716-14050735 Msa0876230:CDS 35.0%
TATGTCCCTATGATCTATGT+GGG - chr6_1:14050717-14050736 Msa0876230:CDS 35.0%
TTGTTGTCTATGAAGTCTTC+TGG - chr6_1:14050762-14050781 Msa0876230:CDS 35.0%
TATGAAGTCTTCTGGTATCA+CGG - chr6_1:14050770-14050789 Msa0876230:CDS 35.0%
CGGTGAATTTGTCAGAATTT+CGG - chr6_1:14050790-14050809 Msa0876230:CDS 35.0%
! CGGTAAATTTGCTCAAATCA+CGG + chr6_1:14050823-14050842 None:intergenic 35.0%
ATGCTTTGCAATTGAGAGAT+AGG - chr6_1:14051001-14051020 Msa0876230:CDS 35.0%
ATTAACAAATACCCACCACA+TGG + chr6_1:14051033-14051052 None:intergenic 35.0%
TGTTAACCATTTGATTCTCC+TGG - chr6_1:14051177-14051196 Msa0876230:CDS 35.0%
ATTTGATTCTCCTGGTGATT+CGG - chr6_1:14051185-14051204 Msa0876230:CDS 35.0%
! TTTTCGTTCATTGCTCTATG+AGG - chr6_1:14051454-14051473 Msa0876230:intron 35.0%
!! AATCCTTTTTCACGATGAGT+CGG - chr6_1:14051862-14051881 Msa0876230:intron 35.0%
ACATGGTTCCTATAAAGAAG+AGG - chr6_1:14052008-14052027 Msa0876230:intron 35.0%
GAAGAGGAAAATTGTGTTGA+AGG - chr6_1:14052024-14052043 Msa0876230:intron 35.0%
GGATTGTAGTGTTTCTTCTA+AGG - chr6_1:14052045-14052064 Msa0876230:intron 35.0%
! TTGTAGTGTTTCTTCTAAGG+TGG - chr6_1:14052048-14052067 Msa0876230:intron 35.0%
! CGGCTTATATATGAGACTTT+TGG - chr6_1:14052123-14052142 Msa0876230:CDS 35.0%
TGGGTTAACCTTTGTGAATT+AGG - chr6_1:14052229-14052248 Msa0876230:CDS 35.0%
GGGTTAACCTTTGTGAATTA+GGG - chr6_1:14052230-14052249 Msa0876230:CDS 35.0%
GGTTAACCTTTGTGAATTAG+GGG - chr6_1:14052231-14052250 Msa0876230:CDS 35.0%
! CAAATTTGGTTGGTATGTAG+AGG - chr6_1:14052259-14052278 Msa0876230:five_prime_UTR 35.0%
ACATAAGACCATGTTTGGAA+TGG - chr6_1:14050539-14050558 Msa0876230:three_prime_UTR 35.0%
TTTCAGAACCAGAATTGATG+AGG + chr6_1:14050639-14050658 None:intergenic 35.0%
ATATGTCCCTATGATCTATG+TGG - chr6_1:14050716-14050735 Msa0876230:CDS 35.0%
TATGTCCCTATGATCTATGT+GGG - chr6_1:14050717-14050736 Msa0876230:CDS 35.0%
TTGTTGTCTATGAAGTCTTC+TGG - chr6_1:14050762-14050781 Msa0876230:CDS 35.0%
TATGAAGTCTTCTGGTATCA+CGG - chr6_1:14050770-14050789 Msa0876230:CDS 35.0%
CGGTGAATTTGTCAGAATTT+CGG - chr6_1:14050790-14050809 Msa0876230:CDS 35.0%
! CGGTAAATTTGCTCAAATCA+CGG + chr6_1:14050823-14050842 None:intergenic 35.0%
ATGCTTTGCAATTGAGAGAT+AGG - chr6_1:14051001-14051020 Msa0876230:CDS 35.0%
ATTAACAAATACCCACCACA+TGG + chr6_1:14051033-14051052 None:intergenic 35.0%
TGTTAACCATTTGATTCTCC+TGG - chr6_1:14051177-14051196 Msa0876230:CDS 35.0%
ATTTGATTCTCCTGGTGATT+CGG - chr6_1:14051185-14051204 Msa0876230:CDS 35.0%
! TTTTCGTTCATTGCTCTATG+AGG - chr6_1:14051454-14051473 Msa0876230:intron 35.0%
!! AATCCTTTTTCACGATGAGT+CGG - chr6_1:14051862-14051881 Msa0876230:intron 35.0%
ACATGGTTCCTATAAAGAAG+AGG - chr6_1:14052008-14052027 Msa0876230:intron 35.0%
GAAGAGGAAAATTGTGTTGA+AGG - chr6_1:14052024-14052043 Msa0876230:intron 35.0%
GGATTGTAGTGTTTCTTCTA+AGG - chr6_1:14052045-14052064 Msa0876230:intron 35.0%
! TTGTAGTGTTTCTTCTAAGG+TGG - chr6_1:14052048-14052067 Msa0876230:intron 35.0%
! CGGCTTATATATGAGACTTT+TGG - chr6_1:14052123-14052142 Msa0876230:CDS 35.0%
TGGGTTAACCTTTGTGAATT+AGG - chr6_1:14052229-14052248 Msa0876230:CDS 35.0%
GGGTTAACCTTTGTGAATTA+GGG - chr6_1:14052230-14052249 Msa0876230:CDS 35.0%
GGTTAACCTTTGTGAATTAG+GGG - chr6_1:14052231-14052250 Msa0876230:CDS 35.0%
! CAAATTTGGTTGGTATGTAG+AGG - chr6_1:14052259-14052278 Msa0876230:five_prime_UTR 35.0%
CACTTGATCCATTCCAAACA+TGG + chr6_1:14050550-14050569 None:intergenic 40.0%
!! GTAGCATTAGCTTGTGATTG+AGG + chr6_1:14050574-14050593 None:intergenic 40.0%
CTCATCAACCTCATCAATTC+TGG - chr6_1:14050628-14050647 Msa0876230:exon 40.0%
ATGTCCCTATGATCTATGTG+GGG - chr6_1:14050718-14050737 Msa0876230:CDS 40.0%
ATGTCCCCACATAGATCATA+GGG + chr6_1:14050725-14050744 None:intergenic 40.0%
CACAATCTCAACGTGTATCA+CGG + chr6_1:14050843-14050862 None:intergenic 40.0%
GAATCACCAGGAGAATCAAA+TGG + chr6_1:14051186-14051205 None:intergenic 40.0%
AGGATCGTGAACCCTATTTA+TGG - chr6_1:14051485-14051504 Msa0876230:intron 40.0%
GGATCGTGAACCCTATTTAT+GGG - chr6_1:14051486-14051505 Msa0876230:intron 40.0%
AACCCTATTTATGGGTCAGT+GGG - chr6_1:14051494-14051513 Msa0876230:intron 40.0%
TGTCATAGGACTTGAATGGT+GGG + chr6_1:14051628-14051647 None:intergenic 40.0%
ATGTCATAGGACTTGAATGG+TGG + chr6_1:14051629-14051648 None:intergenic 40.0%
CGTATGTCATAGGACTTGAA+TGG + chr6_1:14051632-14051651 None:intergenic 40.0%
! AGTTCTCATCTTTTGACACG+TGG + chr6_1:14051655-14051674 None:intergenic 40.0%
CGTGTCAAAAGATGAGAACT+CGG - chr6_1:14051655-14051674 Msa0876230:intron 40.0%
CCACTTTCACTATCTTTACC+CGG + chr6_1:14051824-14051843 None:intergenic 40.0%
CGGGTAAAGATAGTGAAAGT+GGG - chr6_1:14051822-14051841 Msa0876230:intron 40.0%
GGGTAAAGATAGTGAAAGTG+GGG - chr6_1:14051823-14051842 Msa0876230:intron 40.0%
TGAGTCAGAAGCTAAGGAAA+GGG - chr6_1:14051895-14051914 Msa0876230:intron 40.0%
!! TTTCTTCTAAGGTGGAGCTT+GGG - chr6_1:14052056-14052075 Msa0876230:intron 40.0%
GCTTGACCTTTCAGCTTAAA+TGG - chr6_1:14052078-14052097 Msa0876230:CDS 40.0%
CTCAAGCCATTTAAGCTGAA+AGG + chr6_1:14052087-14052106 None:intergenic 40.0%
TGAGCTGTTTGTGACTCAAT+CGG - chr6_1:14052103-14052122 Msa0876230:CDS 40.0%
GTACATCCCCTAATTCACAA+AGG + chr6_1:14052240-14052259 None:intergenic 40.0%
AGGGGATGTACAAATTTGGT+TGG - chr6_1:14052249-14052268 Msa0876230:exon 40.0%
! TGGTTGGTATGTAGAGGAAA+AGG - chr6_1:14052265-14052284 Msa0876230:five_prime_UTR 40.0%
CACTTGATCCATTCCAAACA+TGG + chr6_1:14050550-14050569 None:intergenic 40.0%
!! GTAGCATTAGCTTGTGATTG+AGG + chr6_1:14050574-14050593 None:intergenic 40.0%
CTCATCAACCTCATCAATTC+TGG - chr6_1:14050628-14050647 Msa0876230:exon 40.0%
ATGTCCCTATGATCTATGTG+GGG - chr6_1:14050718-14050737 Msa0876230:CDS 40.0%
ATGTCCCCACATAGATCATA+GGG + chr6_1:14050725-14050744 None:intergenic 40.0%
CACAATCTCAACGTGTATCA+CGG + chr6_1:14050843-14050862 None:intergenic 40.0%
GAATCACCAGGAGAATCAAA+TGG + chr6_1:14051186-14051205 None:intergenic 40.0%
AGGATCGTGAACCCTATTTA+TGG - chr6_1:14051485-14051504 Msa0876230:intron 40.0%
GGATCGTGAACCCTATTTAT+GGG - chr6_1:14051486-14051505 Msa0876230:intron 40.0%
AACCCTATTTATGGGTCAGT+GGG - chr6_1:14051494-14051513 Msa0876230:intron 40.0%
TGTCATAGGACTTGAATGGT+GGG + chr6_1:14051628-14051647 None:intergenic 40.0%
ATGTCATAGGACTTGAATGG+TGG + chr6_1:14051629-14051648 None:intergenic 40.0%
CGTATGTCATAGGACTTGAA+TGG + chr6_1:14051632-14051651 None:intergenic 40.0%
! AGTTCTCATCTTTTGACACG+TGG + chr6_1:14051655-14051674 None:intergenic 40.0%
CGTGTCAAAAGATGAGAACT+CGG - chr6_1:14051655-14051674 Msa0876230:intron 40.0%
CCACTTTCACTATCTTTACC+CGG + chr6_1:14051824-14051843 None:intergenic 40.0%
CGGGTAAAGATAGTGAAAGT+GGG - chr6_1:14051822-14051841 Msa0876230:intron 40.0%
GGGTAAAGATAGTGAAAGTG+GGG - chr6_1:14051823-14051842 Msa0876230:intron 40.0%
TGAGTCAGAAGCTAAGGAAA+GGG - chr6_1:14051895-14051914 Msa0876230:intron 40.0%
!! TTTCTTCTAAGGTGGAGCTT+GGG - chr6_1:14052056-14052075 Msa0876230:intron 40.0%
GCTTGACCTTTCAGCTTAAA+TGG - chr6_1:14052078-14052097 Msa0876230:CDS 40.0%
CTCAAGCCATTTAAGCTGAA+AGG + chr6_1:14052087-14052106 None:intergenic 40.0%
TGAGCTGTTTGTGACTCAAT+CGG - chr6_1:14052103-14052122 Msa0876230:CDS 40.0%
GTACATCCCCTAATTCACAA+AGG + chr6_1:14052240-14052259 None:intergenic 40.0%
AGGGGATGTACAAATTTGGT+TGG - chr6_1:14052249-14052268 Msa0876230:exon 40.0%
! TGGTTGGTATGTAGAGGAAA+AGG - chr6_1:14052265-14052284 Msa0876230:five_prime_UTR 40.0%
!! GCTAAGTTTTATGGTCGTGC+TGG - chr6_1:14050604-14050623 Msa0876230:three_prime_UTR 45.0%
!! GGTTCTGAAAATCTTCGTCC+TGG - chr6_1:14050649-14050668 Msa0876230:CDS 45.0%
GATGTCCCCACATAGATCAT+AGG + chr6_1:14050726-14050745 None:intergenic 45.0%
AGAGATAGGTCAGATCCATG+TGG - chr6_1:14051015-14051034 Msa0876230:CDS 45.0%
ATAGGTCAGATCCATGTGGT+GGG - chr6_1:14051019-14051038 Msa0876230:CDS 45.0%
TCATTGCTCTATGAGGCTTG+TGG - chr6_1:14051461-14051480 Msa0876230:intron 45.0%
CATTGCTCTATGAGGCTTGT+GGG - chr6_1:14051462-14051481 Msa0876230:intron 45.0%
GAACCCTATTTATGGGTCAG+TGG - chr6_1:14051493-14051512 Msa0876230:intron 45.0%
GACCCACTGACCCATAAATA+GGG + chr6_1:14051499-14051518 None:intergenic 45.0%
AGACCCACTGACCCATAAAT+AGG + chr6_1:14051500-14051519 None:intergenic 45.0%
! ATGGGTCAGTGGGTCTTTTA+TGG - chr6_1:14051504-14051523 Msa0876230:intron 45.0%
! TCAGTGGGTCTTTTATGGTC+TGG - chr6_1:14051509-14051528 Msa0876230:intron 45.0%
! GTCTTTTATGGTCTGGTAGC+TGG - chr6_1:14051516-14051535 Msa0876230:intron 45.0%
CTTCAAAATGGCTTCCACAG+CGG + chr6_1:14051555-14051574 None:intergenic 45.0%
!! GCTGTGGAAGCCATTTTGAA+GGG - chr6_1:14051554-14051573 Msa0876230:intron 45.0%
GTCAAAAGATGAGAACTCGG+AGG - chr6_1:14051658-14051677 Msa0876230:intron 45.0%
AGACTAAGCAGGTTAGGACT+CGG - chr6_1:14051681-14051700 Msa0876230:intron 45.0%
CCAACTTCATTGCTTGGCTT+CGG + chr6_1:14051731-14051750 None:intergenic 45.0%
CGAAGCCAAGCAATGAAGTT+GGG - chr6_1:14051729-14051748 Msa0876230:intron 45.0%
! ACGATTCATGGCTTTTGGAC+CGG + chr6_1:14051790-14051809 None:intergenic 45.0%
! CAGTGACGATTCATGGCTTT+TGG + chr6_1:14051795-14051814 None:intergenic 45.0%
TTTCACTATCTTTACCCGGC+TGG + chr6_1:14051820-14051839 None:intergenic 45.0%
CCGGGTAAAGATAGTGAAAG+TGG - chr6_1:14051821-14051840 Msa0876230:intron 45.0%
TAGTGAAAGTGGGGTTTCTG+TGG - chr6_1:14051832-14051851 Msa0876230:intron 45.0%
ACTCCGACTCATCGTGAAAA+AGG + chr6_1:14051868-14051887 None:intergenic 45.0%
TGAACCTGAGTCAGAAGCTA+AGG - chr6_1:14051889-14051908 Msa0876230:intron 45.0%
CTTTCCTTAGCTTCTGACTC+AGG + chr6_1:14051896-14051915 None:intergenic 45.0%
CTGAGTCAGAAGCTAAGGAA+AGG - chr6_1:14051894-14051913 Msa0876230:intron 45.0%
GAGTCAGAAGCTAAGGAAAG+GGG - chr6_1:14051896-14051915 Msa0876230:intron 45.0%
ATGTACTCCTCATGTGACAC+CGG + chr6_1:14051992-14052011 None:intergenic 45.0%
!! GTTTCTTCTAAGGTGGAGCT+TGG - chr6_1:14052055-14052074 Msa0876230:intron 45.0%
!! GCTAAGTTTTATGGTCGTGC+TGG - chr6_1:14050604-14050623 Msa0876230:three_prime_UTR 45.0%
!! GGTTCTGAAAATCTTCGTCC+TGG - chr6_1:14050649-14050668 Msa0876230:CDS 45.0%
GATGTCCCCACATAGATCAT+AGG + chr6_1:14050726-14050745 None:intergenic 45.0%
AGAGATAGGTCAGATCCATG+TGG - chr6_1:14051015-14051034 Msa0876230:CDS 45.0%
ATAGGTCAGATCCATGTGGT+GGG - chr6_1:14051019-14051038 Msa0876230:CDS 45.0%
TCATTGCTCTATGAGGCTTG+TGG - chr6_1:14051461-14051480 Msa0876230:intron 45.0%
CATTGCTCTATGAGGCTTGT+GGG - chr6_1:14051462-14051481 Msa0876230:intron 45.0%
GAACCCTATTTATGGGTCAG+TGG - chr6_1:14051493-14051512 Msa0876230:intron 45.0%
GACCCACTGACCCATAAATA+GGG + chr6_1:14051499-14051518 None:intergenic 45.0%
AGACCCACTGACCCATAAAT+AGG + chr6_1:14051500-14051519 None:intergenic 45.0%
! ATGGGTCAGTGGGTCTTTTA+TGG - chr6_1:14051504-14051523 Msa0876230:intron 45.0%
! TCAGTGGGTCTTTTATGGTC+TGG - chr6_1:14051509-14051528 Msa0876230:intron 45.0%
! GTCTTTTATGGTCTGGTAGC+TGG - chr6_1:14051516-14051535 Msa0876230:intron 45.0%
CTTCAAAATGGCTTCCACAG+CGG + chr6_1:14051555-14051574 None:intergenic 45.0%
!! GCTGTGGAAGCCATTTTGAA+GGG - chr6_1:14051554-14051573 Msa0876230:intron 45.0%
GTCAAAAGATGAGAACTCGG+AGG - chr6_1:14051658-14051677 Msa0876230:intron 45.0%
AGACTAAGCAGGTTAGGACT+CGG - chr6_1:14051681-14051700 Msa0876230:intron 45.0%
CCAACTTCATTGCTTGGCTT+CGG + chr6_1:14051731-14051750 None:intergenic 45.0%
CGAAGCCAAGCAATGAAGTT+GGG - chr6_1:14051729-14051748 Msa0876230:intron 45.0%
! ACGATTCATGGCTTTTGGAC+CGG + chr6_1:14051790-14051809 None:intergenic 45.0%
! CAGTGACGATTCATGGCTTT+TGG + chr6_1:14051795-14051814 None:intergenic 45.0%
TTTCACTATCTTTACCCGGC+TGG + chr6_1:14051820-14051839 None:intergenic 45.0%
CCGGGTAAAGATAGTGAAAG+TGG - chr6_1:14051821-14051840 Msa0876230:intron 45.0%
TAGTGAAAGTGGGGTTTCTG+TGG - chr6_1:14051832-14051851 Msa0876230:intron 45.0%
ACTCCGACTCATCGTGAAAA+AGG + chr6_1:14051868-14051887 None:intergenic 45.0%
TGAACCTGAGTCAGAAGCTA+AGG - chr6_1:14051889-14051908 Msa0876230:intron 45.0%
CTTTCCTTAGCTTCTGACTC+AGG + chr6_1:14051896-14051915 None:intergenic 45.0%
CTGAGTCAGAAGCTAAGGAA+AGG - chr6_1:14051894-14051913 Msa0876230:intron 45.0%
GAGTCAGAAGCTAAGGAAAG+GGG - chr6_1:14051896-14051915 Msa0876230:intron 45.0%
ATGTACTCCTCATGTGACAC+CGG + chr6_1:14051992-14052011 None:intergenic 45.0%
!! GTTTCTTCTAAGGTGGAGCT+TGG - chr6_1:14052055-14052074 Msa0876230:intron 45.0%
GATAGGTCAGATCCATGTGG+TGG - chr6_1:14051018-14051037 Msa0876230:CDS 50.0%
! TCTCCTGGTGATTCGGAGTT+TGG - chr6_1:14051192-14051211 Msa0876230:CDS 50.0%
! TGATTCGGAGTTTGGCCGAA+AGG - chr6_1:14051200-14051219 Msa0876230:CDS 50.0%
!! CGCTGTGGAAGCCATTTTGA+AGG - chr6_1:14051553-14051572 Msa0876230:intron 50.0%
TCCGAAGCTATCGGAGTGAT+CGG + chr6_1:14051584-14051603 None:intergenic 50.0%
TCAGCAGTCTCCGAAGCTAT+CGG + chr6_1:14051593-14051612 None:intergenic 50.0%
GGAGACTGCTGAAGATGGAA+GGG - chr6_1:14051601-14051620 Msa0876230:intron 50.0%
GAGACTGCTGAAGATGGAAG+GGG - chr6_1:14051602-14051621 Msa0876230:intron 50.0%
TGACACGTGGCGTATGTCAT+AGG + chr6_1:14051642-14051661 None:intergenic 50.0%
ATTGCTTGGCTTCGGCTTCA+TGG + chr6_1:14051723-14051742 None:intergenic 50.0%
CCGAAGCCAAGCAATGAAGT+TGG - chr6_1:14051728-14051747 Msa0876230:intron 50.0%
CCAAGCAATGAAGTTGGGTC+CGG - chr6_1:14051734-14051753 Msa0876230:intron 50.0%
AATGAAGTTGGGTCCGGTTC+AGG - chr6_1:14051740-14051759 Msa0876230:intron 50.0%
ATGAAGTTGGGTCCGGTTCA+GGG - chr6_1:14051741-14051760 Msa0876230:intron 50.0%
GTCCAATTCGGCCAAAGAAG+TGG - chr6_1:14051763-14051782 Msa0876230:intron 50.0%
GTCCACTTCTTTGGCCGAAT+TGG + chr6_1:14051768-14051787 None:intergenic 50.0%
ATTCGGCCAAAGAAGTGGAC+CGG - chr6_1:14051768-14051787 Msa0876230:intron 50.0%
TTTGGACCGGTCCACTTCTT+TGG + chr6_1:14051777-14051796 None:intergenic 50.0%
! CTGAGGAAGGTGTGAGTGAT+GGG - chr6_1:14051936-14051955 Msa0876230:intron 50.0%
! TGAGGAAGGTGTGAGTGATG+GGG - chr6_1:14051937-14051956 Msa0876230:intron 50.0%
! GCTTAGGCTTGGTATCGAAC+CGG - chr6_1:14051970-14051989 Msa0876230:intron 50.0%
!! TATCGAACCGGTGTCACATG+AGG - chr6_1:14051982-14052001 Msa0876230:intron 50.0%
! GGTGTCACATGAGGAGTACA+TGG - chr6_1:14051991-14052010 Msa0876230:intron 50.0%
GATAGGTCAGATCCATGTGG+TGG - chr6_1:14051018-14051037 Msa0876230:CDS 50.0%
! TCTCCTGGTGATTCGGAGTT+TGG - chr6_1:14051192-14051211 Msa0876230:CDS 50.0%
! TGATTCGGAGTTTGGCCGAA+AGG - chr6_1:14051200-14051219 Msa0876230:CDS 50.0%
!! CGCTGTGGAAGCCATTTTGA+AGG - chr6_1:14051553-14051572 Msa0876230:intron 50.0%
TCCGAAGCTATCGGAGTGAT+CGG + chr6_1:14051584-14051603 None:intergenic 50.0%
TCAGCAGTCTCCGAAGCTAT+CGG + chr6_1:14051593-14051612 None:intergenic 50.0%
GGAGACTGCTGAAGATGGAA+GGG - chr6_1:14051601-14051620 Msa0876230:intron 50.0%
GAGACTGCTGAAGATGGAAG+GGG - chr6_1:14051602-14051621 Msa0876230:intron 50.0%
TGACACGTGGCGTATGTCAT+AGG + chr6_1:14051642-14051661 None:intergenic 50.0%
ATTGCTTGGCTTCGGCTTCA+TGG + chr6_1:14051723-14051742 None:intergenic 50.0%
CCGAAGCCAAGCAATGAAGT+TGG - chr6_1:14051728-14051747 Msa0876230:intron 50.0%
CCAAGCAATGAAGTTGGGTC+CGG - chr6_1:14051734-14051753 Msa0876230:intron 50.0%
AATGAAGTTGGGTCCGGTTC+AGG - chr6_1:14051740-14051759 Msa0876230:intron 50.0%
ATGAAGTTGGGTCCGGTTCA+GGG - chr6_1:14051741-14051760 Msa0876230:intron 50.0%
GTCCAATTCGGCCAAAGAAG+TGG - chr6_1:14051763-14051782 Msa0876230:intron 50.0%
GTCCACTTCTTTGGCCGAAT+TGG + chr6_1:14051768-14051787 None:intergenic 50.0%
ATTCGGCCAAAGAAGTGGAC+CGG - chr6_1:14051768-14051787 Msa0876230:intron 50.0%
TTTGGACCGGTCCACTTCTT+TGG + chr6_1:14051777-14051796 None:intergenic 50.0%
! CTGAGGAAGGTGTGAGTGAT+GGG - chr6_1:14051936-14051955 Msa0876230:intron 50.0%
! TGAGGAAGGTGTGAGTGATG+GGG - chr6_1:14051937-14051956 Msa0876230:intron 50.0%
! GCTTAGGCTTGGTATCGAAC+CGG - chr6_1:14051970-14051989 Msa0876230:intron 50.0%
!! TATCGAACCGGTGTCACATG+AGG - chr6_1:14051982-14052001 Msa0876230:intron 50.0%
! GGTGTCACATGAGGAGTACA+TGG - chr6_1:14051991-14052010 Msa0876230:intron 50.0%
TGCTCTATGAGGCTTGTGGG+AGG - chr6_1:14051465-14051484 Msa0876230:intron 55.0%
!! GATCGGCTCGCCCTTCAAAA+TGG + chr6_1:14051567-14051586 None:intergenic 55.0%
GCCGATCACTCCGATAGCTT+CGG - chr6_1:14051580-14051599 Msa0876230:intron 55.0%
GCTTCGGAGACTGCTGAAGA+TGG - chr6_1:14051596-14051615 Msa0876230:intron 55.0%
CGGAGACTGCTGAAGATGGA+AGG - chr6_1:14051600-14051619 Msa0876230:intron 55.0%
GAACTCGGAGGAGACTAAGC+AGG - chr6_1:14051670-14051689 Msa0876230:intron 55.0%
CGGAGGAGACTAAGCAGGTT+AGG - chr6_1:14051675-14051694 Msa0876230:intron 55.0%
CCGGACCCAACTTCATTGCT+TGG + chr6_1:14051737-14051756 None:intergenic 55.0%
GTCCGGTTCAGGGTCCAATT+CGG - chr6_1:14051751-14051770 Msa0876230:intron 55.0%
! GCTGGCTCAGTGACGATTCA+TGG + chr6_1:14051802-14051821 None:intergenic 55.0%
TGAATCGTCACTGAGCCAGC+CGG - chr6_1:14051802-14051821 Msa0876230:intron 55.0%
TAAGGAAAGGGGTCGAGCTG+AGG - chr6_1:14051907-14051926 Msa0876230:intron 55.0%
AAGGAAAGGGGTCGAGCTGA+GGG - chr6_1:14051908-14051927 Msa0876230:intron 55.0%
CACTCACACCTTCCTCAGCT+CGG + chr6_1:14051934-14051953 None:intergenic 55.0%
! GCTGAGGAAGGTGTGAGTGA+TGG - chr6_1:14051935-14051954 Msa0876230:intron 55.0%
! GAAGGTGTGAGTGATGGGGT+TGG - chr6_1:14051941-14051960 Msa0876230:intron 55.0%
!! TGTGAGTGATGGGGTTGGCT+TGG - chr6_1:14051946-14051965 Msa0876230:intron 55.0%
!! ATGGGGTTGGCTTGGAGCTT+AGG - chr6_1:14051954-14051973 Msa0876230:intron 55.0%
!! GTTGGCTTGGAGCTTAGGCT+TGG - chr6_1:14051959-14051978 Msa0876230:intron 55.0%
TGCTCTATGAGGCTTGTGGG+AGG - chr6_1:14051465-14051484 Msa0876230:intron 55.0%
!! GATCGGCTCGCCCTTCAAAA+TGG + chr6_1:14051567-14051586 None:intergenic 55.0%
GCCGATCACTCCGATAGCTT+CGG - chr6_1:14051580-14051599 Msa0876230:intron 55.0%
GCTTCGGAGACTGCTGAAGA+TGG - chr6_1:14051596-14051615 Msa0876230:intron 55.0%
CGGAGACTGCTGAAGATGGA+AGG - chr6_1:14051600-14051619 Msa0876230:intron 55.0%
GAACTCGGAGGAGACTAAGC+AGG - chr6_1:14051670-14051689 Msa0876230:intron 55.0%
CGGAGGAGACTAAGCAGGTT+AGG - chr6_1:14051675-14051694 Msa0876230:intron 55.0%
CCGGACCCAACTTCATTGCT+TGG + chr6_1:14051737-14051756 None:intergenic 55.0%
GTCCGGTTCAGGGTCCAATT+CGG - chr6_1:14051751-14051770 Msa0876230:intron 55.0%
! GCTGGCTCAGTGACGATTCA+TGG + chr6_1:14051802-14051821 None:intergenic 55.0%
TGAATCGTCACTGAGCCAGC+CGG - chr6_1:14051802-14051821 Msa0876230:intron 55.0%
TAAGGAAAGGGGTCGAGCTG+AGG - chr6_1:14051907-14051926 Msa0876230:intron 55.0%
AAGGAAAGGGGTCGAGCTGA+GGG - chr6_1:14051908-14051927 Msa0876230:intron 55.0%
CACTCACACCTTCCTCAGCT+CGG + chr6_1:14051934-14051953 None:intergenic 55.0%
! GCTGAGGAAGGTGTGAGTGA+TGG - chr6_1:14051935-14051954 Msa0876230:intron 55.0%
! GAAGGTGTGAGTGATGGGGT+TGG - chr6_1:14051941-14051960 Msa0876230:intron 55.0%
!! TGTGAGTGATGGGGTTGGCT+TGG - chr6_1:14051946-14051965 Msa0876230:intron 55.0%
!! ATGGGGTTGGCTTGGAGCTT+AGG - chr6_1:14051954-14051973 Msa0876230:intron 55.0%
!! GTTGGCTTGGAGCTTAGGCT+TGG - chr6_1:14051959-14051978 Msa0876230:intron 55.0%
CGGCCAAACTCCGAATCACC+AGG + chr6_1:14051198-14051217 None:intergenic 60.0%
CTTCCACAGCGGCTTGACAG+AGG + chr6_1:14051544-14051563 None:intergenic 60.0%
CTTCATGGCTCGTCTGACGC+GGG + chr6_1:14051708-14051727 None:intergenic 60.0%
GCTTCATGGCTCGTCTGACG+CGG + chr6_1:14051709-14051728 None:intergenic 60.0%
GGCCGAATTGGACCCTGAAC+CGG + chr6_1:14051756-14051775 None:intergenic 60.0%
GAATCGTCACTGAGCCAGCC+GGG - chr6_1:14051803-14051822 Msa0876230:intron 60.0%
CGGCCAAACTCCGAATCACC+AGG + chr6_1:14051198-14051217 None:intergenic 60.0%
CTTCCACAGCGGCTTGACAG+AGG + chr6_1:14051544-14051563 None:intergenic 60.0%
CTTCATGGCTCGTCTGACGC+GGG + chr6_1:14051708-14051727 None:intergenic 60.0%
GCTTCATGGCTCGTCTGACG+CGG + chr6_1:14051709-14051728 None:intergenic 60.0%
GGCCGAATTGGACCCTGAAC+CGG + chr6_1:14051756-14051775 None:intergenic 60.0%
GAATCGTCACTGAGCCAGCC+GGG - chr6_1:14051803-14051822 Msa0876230:intron 60.0%
GCACCTCTGTCAAGCCGCTG+TGG - chr6_1:14051538-14051557 Msa0876230:intron 65.0%
GCACCTCTGTCAAGCCGCTG+TGG - chr6_1:14051538-14051557 Msa0876230:intron 65.0%
TCGAGCTGAGGGCCGAGCTG+AGG - chr6_1:14051919-14051938 Msa0876230:intron 70.0%
GCTGAGGGCCGAGCTGAGGA+AGG - chr6_1:14051923-14051942 Msa0876230:intron 70.0%
TCGAGCTGAGGGCCGAGCTG+AGG - chr6_1:14051919-14051938 Msa0876230:intron 70.0%
GCTGAGGGCCGAGCTGAGGA+AGG - chr6_1:14051923-14051942 Msa0876230:intron 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 14050443 14052294 14050443 ID=Msa0876230;Name=Msa0876230
chr6_1 mRNA 14050443 14052294 14050443 ID=Msa0876230-mRNA-1;Parent=Msa0876230;Name=Msa0876230-mRNA-1;_AED=0.02;_eAED=0.02;_QI=38|1|1|1|1|1|2|198|278
chr6_1 exon 14050443 14051287 14050443 ID=Msa0876230-mRNA-1:exon:4062;Parent=Msa0876230-mRNA-1
chr6_1 exon 14052067 14052294 14052067 ID=Msa0876230-mRNA-1:exon:4061;Parent=Msa0876230-mRNA-1
chr6_1 five_prime_UTR 14052257 14052294 14052257 ID=Msa0876230-mRNA-1:five_prime_utr;Parent=Msa0876230-mRNA-1
chr6_1 CDS 14052067 14052256 14052067 ID=Msa0876230-mRNA-1:cds;Parent=Msa0876230-mRNA-1
chr6_1 CDS 14050641 14051287 14050641 ID=Msa0876230-mRNA-1:cds;Parent=Msa0876230-mRNA-1
chr6_1 three_prime_UTR 14050443 14050640 14050443 ID=Msa0876230-mRNA-1:three_prime_utr;Parent=Msa0876230-mRNA-1
Gene Sequence

>Msa0876230

ATGAGAATGAGTTGTAATGGATGTAGAGTTTTAAGAAAAGGGTGTAGTGAAGATTGTAACATAAGACCATGTTTGGAATGGATCAAGTGTCCTCAATCACAAGCTAATGCTACTGTTTTTCTTGCTAAGTTTTATGGTCGTGCTGGTCTCATCAACCTCATCAATTCTGGTTCTGAAAATCTTCGTCCTGCTATTTTTCGTTCATTGCTCTATGAGGCTTGTGGGAGGATCGTGAACCCTATTTATGGGTCAGTGGGTCTTTTATGGTCTGGTAGCTGGCACCTCTGTCAAGCCGCTGTGGAAGCCATTTTGAAGGGCGAGCCGATCACTCCGATAGCTTCGGAGACTGCTGAAGATGGAAGGGGCCCACCATTCAAGTCCTATGACATACGCCACGTGTCAAAAGATGAGAACTCGGAGGAGACTAAGCAGGTTAGGACTCGGTCCCGCGTCAGACGAGCCATGAAGCCGAAGCCAAGCAATGAAGTTGGGTCCGGTTCAGGGTCCAATTCGGCCAAAGAAGTGGACCGGTCCAAAAGCCATGAATCGTCACTGAGCCAGCCGGGTAAAGATAGTGAAAGTGGGGTTTCTGTGGAGACTTCAATCCTTTTTCACGATGAGTCGGAGTTTGAACCTGAGTCAGAAGCTAAGGAAAGGGGTCGAGCTGAGGGCCGAGCTGAGGAAGGTGTGAGTGATGGGGTTGGCTTGGAGCTTAGGCTTGGTATCGAACCGGTGTCACATGAGGAGTACATGGTTCCTATAAAGAAGAGGAAAATTGTGTTGAAGGATTGTAGTGTTTCTTCTAAGGTGGAGCTTGGGCTTGACCTTTCAGCTTAA
Protein sequence

>Msa0876230

MRMSCNGCRVLRKGCSEDCNIRPCLEWIKCPQSQANATVFLAKFYGRAGLINLINSGSENLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWHLCQAAVEAILKGEPITPIASETAEDGRGPPFKSYDIRHVSKDENSEETKQVRTRSRVRRAMKPKPSNEVGSGSGSNSAKEVDRSKSHESSLSQPGKDSESGVSVETSILFHDESEFEPESEAKERGRAEGRAEEGVSDGVGLELRLGIEPVSHEEYMVPIKKRKIVLKDCSVSSKVELGLDLSA*