AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1253270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1253270 MtrunA17_Chr8g0369871 97.872 141 3 0 142 282 4 144 5.77e-101 291
Msa1253270 MtrunA17_Chr8g0369861 95.804 143 6 0 1 143 1 143 1.03e-100 290
Msa1253270 MtrunA17_Chr7g0272221 37.624 202 117 4 22 220 98 293 1.61e-40 146
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1253270 AT1G78690.5 67.021 282 87 4 4 279 3 284 3.50e-138 391
Msa1253270 AT1G78690.1 67.021 282 87 4 4 279 3 284 3.50e-138 391
Msa1253270 AT1G78690.2 76.471 187 43 1 4 189 3 189 3.14e-106 307
Msa1253270 AT1G78690.3 66.029 209 65 4 77 279 1 209 7.44e-97 283
Msa1253270 AT1G78690.4 66.029 209 65 4 77 279 1 209 7.44e-97 283
Msa1253270 AT3G05510.2 35.268 224 136 3 20 240 3 220 5.98e-39 140
Msa1253270 AT3G05510.1 34.468 235 145 3 9 240 82 310 2.10e-38 140

Find 120 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATATTAGCCCATCTAATTT+TGG 0.094853 8_2:-50675438 None:intergenic
TCCGGCAATGTGGGGATTTA+AGG 0.153117 8_2:+50670853 Msa1253270:CDS
CAAATTTGTAACATCTTAAA+AGG 0.181915 8_2:-50675274 None:intergenic
CTGTTCTGCACCACAAAATA+AGG 0.201232 8_2:-50675785 None:intergenic
AAGAAGATTAACATAATTAT+TGG 0.205505 8_2:+50675026 Msa1253270:CDS
ATCCAAACCATCGGAAGTTT+TGG 0.236147 8_2:-50675135 None:intergenic
TCCCCATTTCAATCGCCTTA+TGG 0.245711 8_2:-50673817 None:intergenic
AATAAGGGAACAAACTAAAT+AGG 0.309309 8_2:-50675769 None:intergenic
CCGACTCTTGTCGGCGGTGG+TGG 0.309559 8_2:+50670508 Msa1253270:five_prime_UTR
CCCCATTTCAATCGCCTTAT+GGG 0.322930 8_2:-50673816 None:intergenic
GTGTTGCCATGGAGAAATTA+AGG 0.335963 8_2:+50675204 Msa1253270:CDS
CCCTTAAATCCCCACATTGC+CGG 0.342600 8_2:-50670854 None:intergenic
TTAATCTTCTTATTGCATAA+TGG 0.350456 8_2:-50675014 None:intergenic
CCGGCAATGTGGGGATTTAA+GGG 0.352422 8_2:+50670854 Msa1253270:CDS
GCCCAAAACTTCCGATGGTT+TGG 0.352965 8_2:+50675133 Msa1253270:CDS
ATGCACAGCCCAAAATTAGA+TGG 0.362933 8_2:+50675429 Msa1253270:three_prime_UTR
TCTATGCGATCGTGTATTAC+AGG 0.371929 8_2:-50675705 None:intergenic
CGACTCTTGTCGGCGGTGGT+GGG 0.375123 8_2:+50670509 Msa1253270:five_prime_UTR
GGCAATACAATCGGAGTTAT+AGG 0.380006 8_2:-50673864 None:intergenic
GAGAGGGATGCCTTTGGGTC+TGG 0.393985 8_2:-50670699 None:intergenic
GCTGGAAGGTCAAATTCAAT+TGG 0.397107 8_2:-50675053 None:intergenic
GCTAACTTAGTATCAAATAT+AGG 0.397560 8_2:-50670881 None:intergenic
CACCCATAAGGCGATTGAAA+TGG 0.400448 8_2:+50673814 Msa1253270:CDS
ATGGAGAAATTAAGGTGTTA+TGG 0.405553 8_2:+50675212 Msa1253270:CDS
TGAAAACCATGATGAACAAT+TGG 0.407703 8_2:-50673885 None:intergenic
GGTGAGGAGAGGGATGCCTT+TGG 0.409255 8_2:-50670705 None:intergenic
ACCCATAAGGCGATTGAAAT+GGG 0.410412 8_2:+50673815 Msa1253270:CDS
ATAGCCATTTCACTCATTGC+TGG 0.413100 8_2:-50675071 None:intergenic
GTGAGGAGAGGGATGCCTTT+GGG 0.415473 8_2:-50670704 None:intergenic
GCTCAATCCTCTTATAGTCT+AGG 0.420836 8_2:+50675508 Msa1253270:three_prime_UTR
GAATCACTTCCGACTCTTGT+CGG 0.429901 8_2:+50670499 Msa1253270:five_prime_UTR
TGTAACATCTTAAAAGGCTT+AGG 0.432824 8_2:-50675268 None:intergenic
TGCTTGAACCGCATCCCAAC+CGG 0.434204 8_2:-50675650 None:intergenic
GGAATGAATCATTCCGAGAC+TGG 0.443898 8_2:-50675097 None:intergenic
CTACCAAACATATATTTCTC+TGG 0.451010 8_2:-50674978 None:intergenic
GACTCTTGTCGGCGGTGGTG+GGG 0.453538 8_2:+50670510 Msa1253270:five_prime_UTR
AATGATTCATTCCCTGCTAT+CGG 0.460627 8_2:+50675107 Msa1253270:CDS
TAGGATCCCTAGACTATAAG+AGG 0.462156 8_2:-50675515 None:intergenic
CCTTCCAGCAATGAGTGAAA+TGG 0.466140 8_2:+50675067 Msa1253270:CDS
GGCGCTTAAATGATGGAGAA+TGG 0.466287 8_2:+50672124 Msa1253270:CDS
TGTTGTGAGATATAAATAAA+CGG 0.468003 8_2:+50675612 Msa1253270:three_prime_UTR
ATGCCAGAGAAATATATGTT+TGG 0.471220 8_2:+50674975 Msa1253270:CDS
TTGTTGCAGTTTGGATGATC+CGG 0.474093 8_2:+50670835 Msa1253270:intron
TTCTTATTGCATAATGGTAA+AGG 0.476447 8_2:-50675008 None:intergenic
CCAACCGGATCTGCGAATCC+TGG 0.476717 8_2:-50675635 None:intergenic
TTGAGTGAGAACTCTCAACT+TGG 0.477003 8_2:+50675337 Msa1253270:three_prime_UTR
CAGGATTCGCAGATCCGGTT+GGG 0.478873 8_2:+50675636 Msa1253270:three_prime_UTR
CTCAATCCTCTTATAGTCTA+GGG 0.485778 8_2:+50675509 Msa1253270:three_prime_UTR
TGCATACCTATTACAAGAGG+TGG 0.488641 8_2:+50672066 Msa1253270:CDS
TTCAGCAGCAAGAACCCATC+TGG 0.489190 8_2:-50670903 None:intergenic
GTATTGCCAATTGTTCATCA+TGG 0.490395 8_2:+50673879 Msa1253270:CDS
AGCACATGAATGAAGCGCTT+GGG 0.493733 8_2:+50672103 Msa1253270:CDS
TTTGGATGATCCGGCAATGT+GGG 0.498103 8_2:+50670844 Msa1253270:CDS
ATATCTCACAACAAATGATA+AGG 0.502130 8_2:-50675602 None:intergenic
GAGCACATGAATGAAGCGCT+TGG 0.502704 8_2:+50672102 Msa1253270:CDS
ATGATTCATTCCCTGCTATC+GGG 0.503118 8_2:+50675108 Msa1253270:CDS
TGATACTAAGTTAGCCAGAT+GGG 0.506841 8_2:+50670889 Msa1253270:CDS
TCGCAGATCCGGTTGGGATG+CGG 0.510048 8_2:+50675642 Msa1253270:three_prime_UTR
GATGGAGTGGGCGGCGAAGT+CGG 0.511987 8_2:+50670550 Msa1253270:CDS
TGAACAATTGGCAATACAAT+CGG 0.512162 8_2:-50673873 None:intergenic
TGAGTGAGAACTCTCAACTT+GGG 0.512223 8_2:+50675338 Msa1253270:three_prime_UTR
ACGGCCAGGATTCGCAGATC+CGG 0.513553 8_2:+50675631 Msa1253270:three_prime_UTR
GCGCTTGGGCGCTTAAATGA+TGG 0.515254 8_2:+50672117 Msa1253270:CDS
ATCAAGACGATGCACCCATA+AGG 0.516940 8_2:+50673802 Msa1253270:CDS
AACATCTTAAAAGGCTTAGG+TGG 0.517144 8_2:-50675265 None:intergenic
ACATCTTAAAAGGCTTAGGT+GGG 0.523192 8_2:-50675264 None:intergenic
AGAGAAAATTCGTGTTGCCA+TGG 0.524956 8_2:+50675193 Msa1253270:CDS
ATAGAATGTCATGTGCTCCT+TGG 0.526294 8_2:+50675723 Msa1253270:three_prime_UTR
GGTTGGGATGCGGTTCAAGC+AGG 0.529057 8_2:+50675652 Msa1253270:three_prime_UTR
AACTTCCGATGGTTTGGATG+AGG 0.529543 8_2:+50675139 Msa1253270:CDS
GCGAAGTCGGACCACCTTCA+CGG 0.537710 8_2:+50670563 Msa1253270:CDS
TCCTTGGTTATTACTCCTCA+AGG 0.539589 8_2:+50675739 Msa1253270:three_prime_UTR
GTGCATGGAGGGTTGCGCAT+AGG 0.540495 8_2:-50675412 None:intergenic
GAAAATGTCGCGGCGGACGA+TGG 0.542504 8_2:+50670532 Msa1253270:exon
GCGCTTAAATGATGGAGAAT+GGG 0.543995 8_2:+50672125 Msa1253270:CDS
CCACCACCGCCGACAAGAGT+CGG 0.545433 8_2:-50670508 None:intergenic
TGTCGCGGCGGACGATGGAG+TGG 0.547996 8_2:+50670537 Msa1253270:CDS
TGTTCTGCACCACAAAATAA+GGG 0.552685 8_2:-50675784 None:intergenic
TGCTGCCTCATCCAAACCAT+CGG 0.562631 8_2:-50675144 None:intergenic
TTGATACTAAGTTAGCCAGA+TGG 0.567590 8_2:+50670888 Msa1253270:CDS
GAGAGTGTCGGCGTTGTGAA+CGG 0.567700 8_2:-50670660 None:intergenic
TGAGATATAAATAAACGGCC+AGG 0.569737 8_2:+50675617 Msa1253270:three_prime_UTR
GCATACCTATTACAAGAGGT+GGG 0.571063 8_2:+50672067 Msa1253270:CDS
AAATGGCTATTGCCCAGTCT+CGG 0.571200 8_2:+50675084 Msa1253270:CDS
ATAACACCTTAATTTCTCCA+TGG 0.579558 8_2:-50675210 None:intergenic
CATCTTAAAAGGCTTAGGTG+GGG 0.580503 8_2:-50675263 None:intergenic
CTCGTTCGTTCCAGACCCAA+AGG 0.584097 8_2:+50670689 Msa1253270:CDS
TGCACAGCCCAAAATTAGAT+GGG 0.585954 8_2:+50675430 Msa1253270:three_prime_UTR
CCATTTCACTCATTGCTGGA+AGG 0.590388 8_2:-50675067 None:intergenic
ATACCTATTACAAGAGGTGG+GGG 0.590840 8_2:+50672069 Msa1253270:CDS
GTCGCGGCGGACGATGGAGT+GGG 0.591023 8_2:+50670538 Msa1253270:CDS
GAGTGAGAACTCTCAACTTG+GGG 0.591146 8_2:+50675339 Msa1253270:three_prime_UTR
GAATGAATCATTCCGAGACT+GGG 0.595529 8_2:-50675096 None:intergenic
TGCGAGGTATGCCGTGAAGG+TGG 0.599802 8_2:-50670574 None:intergenic
TTGGATGATCCGGCAATGTG+GGG 0.611624 8_2:+50670845 Msa1253270:CDS
GGGTGGCCCAAAACTTCCGA+TGG 0.612018 8_2:+50675128 Msa1253270:CDS
CATACCTATTACAAGAGGTG+GGG 0.616369 8_2:+50672068 Msa1253270:CDS
TGGGTCTGGAACGAACGAGA+TGG 0.621737 8_2:-50670685 None:intergenic
TTATTGCATAATGGTAAAGG+AGG 0.636529 8_2:-50675005 None:intergenic
GTCTGGAACGAACGAGATGG+AGG 0.640809 8_2:-50670682 None:intergenic
GATTGCTGACGGTGAGGAGA+GGG 0.641486 8_2:-50670715 None:intergenic
GCGGCGGACGATGGAGTGGG+CGG 0.643306 8_2:+50670541 Msa1253270:CDS
CGGTGGTGGGGAAAATGTCG+CGG 0.650559 8_2:+50670522 Msa1253270:exon
ATTCATTCCCTGCTATCGGG+TGG 0.650574 8_2:+50675111 Msa1253270:CDS
GTTTGGATGATCCGGCAATG+TGG 0.650697 8_2:+50670843 Msa1253270:intron
CCCATAAGGCGATTGAAATG+GGG 0.650823 8_2:+50673816 Msa1253270:CDS
CAATCGGAGTTATAGGTGCA+CGG 0.652808 8_2:-50673857 None:intergenic
AAGGCACTACTAAAATGCAA+AGG 0.655192 8_2:-50675583 None:intergenic
AACGAGATGGAGGAGAGTGT+CGG 0.656228 8_2:-50670672 None:intergenic
AAATGCATACCTATTACAAG+AGG 0.660468 8_2:+50672063 Msa1253270:CDS
CGTGGACATGTGATTGCTGA+CGG 0.669121 8_2:-50670726 None:intergenic
TAAATAGGACAAGTACCTTG+AGG 0.675587 8_2:-50675754 None:intergenic
AGTGTCGGCGTTGTGAACGG+AGG 0.680659 8_2:-50670657 None:intergenic
TGATTGCTGACGGTGAGGAG+AGG 0.686205 8_2:-50670716 None:intergenic
TCACTTCCGACTCTTGTCGG+CGG 0.689382 8_2:+50670502 Msa1253270:five_prime_UTR
AAAATCGTAATAGCAGCAGT+CGG 0.696242 8_2:+50670596 Msa1253270:CDS
ACATGTGATTGCTGACGGTG+AGG 0.711888 8_2:-50670721 None:intergenic
ACCTTGAGGAGTAATAACCA+AGG 0.731105 8_2:-50675740 None:intergenic
TACCTATTACAAGAGGTGGG+GGG 0.737152 8_2:+50672070 Msa1253270:CDS
TGGTGGGGAAAATGTCGCGG+CGG 0.738066 8_2:+50670525 Msa1253270:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCAAATTAAAACTAATCA+GGG - chr8_2:50670995-50671014 None:intergenic 15.0%
!! AAATCAAATTAAAACTAATC+AGG - chr8_2:50670996-50671015 None:intergenic 15.0%
!! CAATTACTCAAAAATAATAA+AGG + chr8_2:50671455-50671474 Msa1253270:intron 15.0%
!! AAAAATAATAAAGGTCTATT+TGG + chr8_2:50671464-50671483 Msa1253270:intron 15.0%
!!! ATTTCATTTTCACAAATAAT+AGG - chr8_2:50673014-50673033 None:intergenic 15.0%
!!! ATTTTAATAAACTTACATTC+TGG + chr8_2:50673044-50673063 Msa1253270:intron 15.0%
!! ACAGTCAAATAAAAAAAAAT+AGG - chr8_2:50673343-50673362 None:intergenic 15.0%
!! AAGAAGATTAACATAATTAT+TGG + chr8_2:50675026-50675045 Msa1253270:CDS 15.0%
!! AAAGTAAAAAATTACTAACT+AGG - chr8_2:50675537-50675556 None:intergenic 15.0%
!!! TTAGTTTTTGTAATGATGAT+TGG + chr8_2:50670798-50670817 Msa1253270:intron 20.0%
!! TACAAAATATAGTCAAATAG+CGG - chr8_2:50671118-50671137 None:intergenic 20.0%
!!! TATTTGACTATATTTTGTAG+TGG + chr8_2:50671119-50671138 Msa1253270:intron 20.0%
!! AATTTCACCATAATAATCAA+GGG - chr8_2:50671670-50671689 None:intergenic 20.0%
!! AAATTTCACCATAATAATCA+AGG - chr8_2:50671671-50671690 None:intergenic 20.0%
!! TGCATAAAAAAAACCAAAAT+TGG + chr8_2:50671701-50671720 Msa1253270:intron 20.0%
!!! AGAACAAATTTTGAAATCAA+GGG + chr8_2:50671740-50671759 Msa1253270:intron 20.0%
!! CTATTACTATTTAGTGTAAT+TGG + chr8_2:50671937-50671956 Msa1253270:intron 20.0%
!!! AAAATCATAGAAAAGTTTTC+AGG - chr8_2:50671995-50672014 None:intergenic 20.0%
!!! TAGTTTTGTTGTTTCTAAAA+TGG + chr8_2:50672026-50672045 Msa1253270:intron 20.0%
!! TATAATGAGAATGAATATTC+AGG + chr8_2:50672496-50672515 Msa1253270:intron 20.0%
!! ATAATGAGAATGAATATTCA+GGG + chr8_2:50672497-50672516 Msa1253270:intron 20.0%
!! AGAATTCTCAAAGAAAAAAT+TGG - chr8_2:50672601-50672620 None:intergenic 20.0%
!! AGATTGTTTACCAAATAAAA+AGG - chr8_2:50672846-50672865 None:intergenic 20.0%
!! ATTAAGCGATAAAAAAAATC+TGG - chr8_2:50673142-50673161 None:intergenic 20.0%
!! TAATAACCAATAAAACAGAA+GGG - chr8_2:50673313-50673332 None:intergenic 20.0%
!! AGAACAAAAGCTATAAAAAT+TGG + chr8_2:50673401-50673420 Msa1253270:intron 20.0%
!!! TTTCCTTGCTTTTTATATTT+GGG + chr8_2:50673504-50673523 Msa1253270:intron 20.0%
!!! ATTTTGCATCATGAATTTAT+AGG - chr8_2:50674125-50674144 None:intergenic 20.0%
!! TATAAATTTGTCGTAACAAA+AGG + chr8_2:50674340-50674359 Msa1253270:intron 20.0%
!! TATTATCTTAATCTTCTGAT+TGG - chr8_2:50674481-50674500 None:intergenic 20.0%
!! AGAACATAATACAAGAAATA+TGG - chr8_2:50674751-50674770 None:intergenic 20.0%
!! TTAATCTTCTTATTGCATAA+TGG - chr8_2:50675017-50675036 None:intergenic 20.0%
!! CAAATTTGTAACATCTTAAA+AGG - chr8_2:50675277-50675296 None:intergenic 20.0%
!!! ATAGAATATTTTAGTTCTGT+AGG + chr8_2:50675381-50675400 Msa1253270:three_prime_UTR 20.0%
!!! TAGAATATTTTAGTTCTGTA+GGG + chr8_2:50675382-50675401 Msa1253270:three_prime_UTR 20.0%
!!! ATAATCATTTTTTCAAGAGA+AGG + chr8_2:50675464-50675483 Msa1253270:three_prime_UTR 20.0%
!! TGTTGTGAGATATAAATAAA+CGG + chr8_2:50675612-50675631 Msa1253270:three_prime_UTR 20.0%
! TTTGTAATGATGATTGGAAA+TGG + chr8_2:50670804-50670823 Msa1253270:intron 25.0%
! GCTAACTTAGTATCAAATAT+AGG - chr8_2:50670884-50670903 None:intergenic 25.0%
! CGAAAAACATATGAATAAAG+TGG - chr8_2:50670947-50670966 None:intergenic 25.0%
! AATGTGAAAACTAAACATAC+CGG - chr8_2:50670972-50670991 None:intergenic 25.0%
! CTTATACATAAGCTCTTATA+TGG + chr8_2:50671334-50671353 Msa1253270:intron 25.0%
!!! GAGAACAAATTTTGAAATCA+AGG + chr8_2:50671739-50671758 Msa1253270:intron 25.0%
! AAAACTAAACTTGGACTAAT+TGG + chr8_2:50671895-50671914 Msa1253270:intron 25.0%
!! ACTCTTTTACGATGATAATT+TGG + chr8_2:50672192-50672211 Msa1253270:intron 25.0%
!! CTCTTTTACGATGATAATTT+GGG + chr8_2:50672193-50672212 Msa1253270:intron 25.0%
!! ATTCTCATTATAACACCTTT+TGG - chr8_2:50672488-50672507 None:intergenic 25.0%
! TAATGAGAATGAATATTCAG+GGG + chr8_2:50672498-50672517 Msa1253270:intron 25.0%
!!! TCTTGTTTTTGATGCATTTA+TGG + chr8_2:50672698-50672717 Msa1253270:intron 25.0%
!!! TGTTGGTTTTCCTTTTTATT+TGG + chr8_2:50672833-50672852 Msa1253270:intron 25.0%
!!! TATTGTCTACTCTGAAATAT+TGG + chr8_2:50673225-50673244 Msa1253270:intron 25.0%
!!! ATTGTCTACTCTGAAATATT+GGG + chr8_2:50673226-50673245 Msa1253270:intron 25.0%
!! AATAGAAGTATAGGATAAAC+AGG + chr8_2:50673272-50673291 Msa1253270:intron 25.0%
! CTAATAACCAATAAAACAGA+AGG - chr8_2:50673314-50673333 None:intergenic 25.0%
!!! CTTTCCTTGCTTTTTATATT+TGG + chr8_2:50673503-50673522 Msa1253270:intron 25.0%
!!! AACTTTGTATCTTTTAGTTC+TGG - chr8_2:50673627-50673646 None:intergenic 25.0%
!! GAATTTAGTTGTTAGACTTT+TGG + chr8_2:50674034-50674053 Msa1253270:intron 25.0%
! CCAAATAATTAGAAAATGAC+AGG - chr8_2:50674237-50674256 None:intergenic 25.0%
!!! CCTGTCATTTTCTAATTATT+TGG + chr8_2:50674234-50674253 Msa1253270:intron 25.0%
! AAGCATTAAGAAAAAGATCA+TGG - chr8_2:50674293-50674312 None:intergenic 25.0%
! ATATATCTTAAGCATACGAT+TGG + chr8_2:50674590-50674609 Msa1253270:intron 25.0%
! TGTGATTCATATTTAGAAAC+TGG + chr8_2:50674698-50674717 Msa1253270:intron 25.0%
! AACAAGAATCATAAGAGTAA+TGG - chr8_2:50674794-50674813 None:intergenic 25.0%
!! AATTTCTGCTTATGTTTTCT+AGG + chr8_2:50674950-50674969 Msa1253270:intron 25.0%
! TTCTTATTGCATAATGGTAA+AGG - chr8_2:50675011-50675030 None:intergenic 25.0%
!!! AGAATATTTTAGTTCTGTAG+GGG + chr8_2:50675383-50675402 Msa1253270:three_prime_UTR 25.0%
!! ATATTAGCCCATCTAATTTT+GGG - chr8_2:50675440-50675459 None:intergenic 25.0%
!! AATATTAGCCCATCTAATTT+TGG - chr8_2:50675441-50675460 None:intergenic 25.0%
! ATATCTCACAACAAATGATA+AGG - chr8_2:50675605-50675624 None:intergenic 25.0%
! AATAAGGGAACAAACTAAAT+AGG - chr8_2:50675772-50675791 None:intergenic 25.0%
! TATTCATATGTTTTTCGCAC+CGG + chr8_2:50670950-50670969 Msa1253270:CDS 30.0%
AAATAGCTATTGTTCTGTGT+TGG + chr8_2:50671151-50671170 Msa1253270:intron 30.0%
! AGTTTGTTCAACTTCAACTA+CGG - chr8_2:50671263-50671282 None:intergenic 30.0%
ACTCAACTATACATTAACAC+AGG - chr8_2:50671413-50671432 None:intergenic 30.0%
TAATAAAGGTCTATTTGGTC+TGG + chr8_2:50671469-50671488 Msa1253270:intron 30.0%
!!! TCTGGCTTTTTTCTTTGTTT+TGG + chr8_2:50671487-50671506 Msa1253270:intron 30.0%
TTGAAAACATGTGTGAGAAA+TGG + chr8_2:50671533-50671552 Msa1253270:intron 30.0%
! TTTTCCCTAATAAGATAGGA+TGG + chr8_2:50671572-50671591 Msa1253270:intron 30.0%
TTTCCCTAATAAGATAGGAT+GGG + chr8_2:50671573-50671592 Msa1253270:intron 30.0%
TATCCCATCCTATCTTATTA+GGG - chr8_2:50671579-50671598 None:intergenic 30.0%
TTCTCAACCCTTGATTATTA+TGG + chr8_2:50671660-50671679 Msa1253270:intron 30.0%
! TAACAAATCGTCACCAATTT+TGG - chr8_2:50671717-50671736 None:intergenic 30.0%
! CTGAAGTACTATATAGTGAT+TGG - chr8_2:50671812-50671831 None:intergenic 30.0%
AAATATAGACGATGCACAAA+AGG - chr8_2:50671842-50671861 None:intergenic 30.0%
!!! TTTAGTTTTGCAAAGCGAAA+TGG - chr8_2:50671884-50671903 None:intergenic 30.0%
! TCTAAAATGGTAACATTCAC+AGG + chr8_2:50672039-50672058 Msa1253270:intron 30.0%
AAATGCATACCTATTACAAG+AGG + chr8_2:50672063-50672082 Msa1253270:CDS 30.0%
!!! TTATTGTCCTTGCTTTTTCT+CGG + chr8_2:50672268-50672287 Msa1253270:intron 30.0%
!! TTTTCTCGGTTGATGTTAAA+TGG + chr8_2:50672282-50672301 Msa1253270:intron 30.0%
CTTTCGTAAAGAGAAAATTG+TGG + chr8_2:50672916-50672935 Msa1253270:intron 30.0%
AAAAAAATCTGGTGAAGTTG+AGG - chr8_2:50673131-50673150 None:intergenic 30.0%
! CAAGCAGTTAATAGAAGTAT+AGG + chr8_2:50673263-50673282 Msa1253270:intron 30.0%
TATAGGATAAACAGGTTTGT+GGG + chr8_2:50673280-50673299 Msa1253270:intron 30.0%
!!! TGTTTTATTTGCTTGACCAT+TGG + chr8_2:50673360-50673379 Msa1253270:intron 30.0%
!!! GTTTTATTTGCTTGACCATT+GGG + chr8_2:50673361-50673380 Msa1253270:intron 30.0%
!! ATAAGATTGCGTTGATTTCA+TGG + chr8_2:50673424-50673443 Msa1253270:intron 30.0%
!! TAAGATTGCGTTGATTTCAT+GGG + chr8_2:50673425-50673444 Msa1253270:intron 30.0%
TGAACAATTGGCAATACAAT+CGG - chr8_2:50673876-50673895 None:intergenic 30.0%
TGAAAACCATGATGAACAAT+TGG - chr8_2:50673888-50673907 None:intergenic 30.0%
AGTGCTACAAATGGTATATA+AGG - chr8_2:50673966-50673985 None:intergenic 30.0%
!!! AGTTGTTAGACTTTTGGAAT+TGG + chr8_2:50674040-50674059 Msa1253270:intron 30.0%
! ATCAGCAGTATTTTCTTACA+AGG + chr8_2:50674081-50674100 Msa1253270:intron 30.0%
AAATGACAGGACATATATCA+AGG - chr8_2:50674224-50674243 None:intergenic 30.0%
CTACTTGTGAGAATTATTGA+AGG + chr8_2:50674417-50674436 Msa1253270:intron 30.0%
CAGAGAAAAAAAGTCTAGTA+CGG - chr8_2:50674646-50674665 None:intergenic 30.0%
!! TAATTTCGTTATGCTGATTC+TGG + chr8_2:50674916-50674935 Msa1253270:intron 30.0%
ATGCCAGAGAAATATATGTT+TGG + chr8_2:50674975-50674994 Msa1253270:CDS 30.0%
CTACCAAACATATATTTCTC+TGG - chr8_2:50674981-50675000 None:intergenic 30.0%
TTATTGCATAATGGTAAAGG+AGG - chr8_2:50675008-50675027 None:intergenic 30.0%
ATAACACCTTAATTTCTCCA+TGG - chr8_2:50675213-50675232 None:intergenic 30.0%
! ATGGAGAAATTAAGGTGTTA+TGG + chr8_2:50675212-50675231 Msa1253270:CDS 30.0%
TGTAACATCTTAAAAGGCTT+AGG - chr8_2:50675271-50675290 None:intergenic 30.0%
AAAATCGTAATAGCAGCAGT+CGG + chr8_2:50670596-50670615 Msa1253270:CDS 35.0%
TTGATACTAAGTTAGCCAGA+TGG + chr8_2:50670888-50670907 Msa1253270:CDS 35.0%
TGATACTAAGTTAGCCAGAT+GGG + chr8_2:50670889-50670908 Msa1253270:CDS 35.0%
!! GTCGTTTTCCCTAATAAGAT+AGG + chr8_2:50671568-50671587 Msa1253270:intron 35.0%
CTATCCCATCCTATCTTATT+AGG - chr8_2:50671580-50671599 None:intergenic 35.0%
CTAATAAGATAGGATGGGAT+AGG + chr8_2:50671578-50671597 Msa1253270:intron 35.0%
! CTCTAACAAAGAAAGCGTAT+CGG + chr8_2:50671634-50671653 Msa1253270:intron 35.0%
TCGCTTTGCAAAACTAAACT+TGG + chr8_2:50671886-50671905 Msa1253270:intron 35.0%
CTAAACTTGGACTAATTGGA+AGG + chr8_2:50671899-50671918 Msa1253270:intron 35.0%
GTAAAAGAGTTATGCTTGTG+TGG - chr8_2:50672182-50672201 None:intergenic 35.0%
AAACTCTTAGCGATACTAGA+GGG - chr8_2:50672248-50672267 None:intergenic 35.0%
AAAACTCTTAGCGATACTAG+AGG - chr8_2:50672249-50672268 None:intergenic 35.0%
! TCTAGGATCATCTCATATTC+TGG - chr8_2:50672343-50672362 None:intergenic 35.0%
AGAATATGAGATGATCCTAG+AGG + chr8_2:50672342-50672361 Msa1253270:intron 35.0%
!! AATCACTCGTAGCTTTGATT+TGG - chr8_2:50672563-50672582 None:intergenic 35.0%
TTGTTATCCATGGCAGAAAA+TGG - chr8_2:50672650-50672669 None:intergenic 35.0%
!! CAGTTAAAGCTTGTTATCCA+TGG - chr8_2:50672660-50672679 None:intergenic 35.0%
! GATGCATTTATGGACTGAAT+TGG + chr8_2:50672708-50672727 Msa1253270:intron 35.0%
! AATCTTTCTTGTGTGTCACT+GGG + chr8_2:50672861-50672880 Msa1253270:intron 35.0%
! TTGAGCTTGATTTGACTAAG+AGG - chr8_2:50672982-50673001 None:intergenic 35.0%
GCTGCTTATCTTGAAAATGT+GGG + chr8_2:50673066-50673085 Msa1253270:intron 35.0%
!! ACTCTGAAATATTGGGTGAT+TGG + chr8_2:50673233-50673252 Msa1253270:intron 35.0%
GTATAGGATAAACAGGTTTG+TGG + chr8_2:50673279-50673298 Msa1253270:intron 35.0%
! GTATGTCCCTTCTGTTTTAT+TGG + chr8_2:50673304-50673323 Msa1253270:intron 35.0%
ATCAATTGTCAAACACCCAA+TGG - chr8_2:50673379-50673398 None:intergenic 35.0%
GATTTCATGGGTAAATTCAG+AGG + chr8_2:50673437-50673456 Msa1253270:intron 35.0%
ACTCAATTGTGGAAAGTTGA+TGG - chr8_2:50673463-50673482 None:intergenic 35.0%
GTGCCCAAATATAAAAAGCA+AGG - chr8_2:50673510-50673529 None:intergenic 35.0%
! TATTTGGGCACACTATTTTC+TGG + chr8_2:50673519-50673538 Msa1253270:intron 35.0%
! TGTACTCCTCTATTACGTTT+TGG + chr8_2:50673547-50673566 Msa1253270:intron 35.0%
TTCAGAGAACTTTCCATTTG+GGG - chr8_2:50673702-50673721 None:intergenic 35.0%
GTTCAGAGAACTTTCCATTT+GGG - chr8_2:50673703-50673722 None:intergenic 35.0%
AGTTCAGAGAACTTTCCATT+TGG - chr8_2:50673704-50673723 None:intergenic 35.0%
AAATGGAAAGTTCTCTGAAC+TGG + chr8_2:50673703-50673722 Msa1253270:intron 35.0%
! TCTTGATGAACTTTTCCTTC+TGG - chr8_2:50673789-50673808 None:intergenic 35.0%
GTATTGCCAATTGTTCATCA+TGG + chr8_2:50673879-50673898 Msa1253270:CDS 35.0%
! TGTTCATCATGGTTTTCATG+AGG + chr8_2:50673890-50673909 Msa1253270:CDS 35.0%
CTCTTTCCTCTAATACCTTT+GGG + chr8_2:50673928-50673947 Msa1253270:intron 35.0%
TCTTTCCTCTAATACCTTTG+GGG + chr8_2:50673929-50673948 Msa1253270:intron 35.0%
TAGTAATGAGCATGTATCGA+TGG + chr8_2:50674158-50674177 Msa1253270:intron 35.0%
TAATGCTTGCTTTCTTCTCA+AGG + chr8_2:50674305-50674324 Msa1253270:intron 35.0%
TGCAAGAGATTAGAGATCAA+AGG + chr8_2:50674390-50674409 Msa1253270:intron 35.0%
! CTGATTGGTCATTGTTCAAT+GGG - chr8_2:50674466-50674485 None:intergenic 35.0%
! TCTGATTGGTCATTGTTCAA+TGG - chr8_2:50674467-50674486 None:intergenic 35.0%
!!! ACTTTTTTTCTCTGCATGAC+CGG + chr8_2:50674652-50674671 Msa1253270:intron 35.0%
CATTAAGACAATTGCAGATC+CGG - chr8_2:50674674-50674693 None:intergenic 35.0%
ATGAGATACTTGCATAGCAA+CGG - chr8_2:50674840-50674859 None:intergenic 35.0%
AATGATTCATTCCCTGCTAT+CGG + chr8_2:50675107-50675126 Msa1253270:CDS 35.0%
ACATCTTAAAAGGCTTAGGT+GGG - chr8_2:50675267-50675286 None:intergenic 35.0%
AACATCTTAAAAGGCTTAGG+TGG - chr8_2:50675268-50675287 None:intergenic 35.0%
! AGAGAAGGTCAACAAGTTTT+AGG + chr8_2:50675479-50675498 Msa1253270:three_prime_UTR 35.0%
! GAGAAGGTCAACAAGTTTTA+GGG + chr8_2:50675480-50675499 Msa1253270:three_prime_UTR 35.0%
CTCAATCCTCTTATAGTCTA+GGG + chr8_2:50675509-50675528 Msa1253270:three_prime_UTR 35.0%
! AAGGCACTACTAAAATGCAA+AGG - chr8_2:50675586-50675605 None:intergenic 35.0%
TGAGATATAAATAAACGGCC+AGG + chr8_2:50675617-50675636 Msa1253270:three_prime_UTR 35.0%
TAAATAGGACAAGTACCTTG+AGG - chr8_2:50675757-50675776 None:intergenic 35.0%
! GTGTTGTTGTTGTTGCAGTT+TGG + chr8_2:50670826-50670845 Msa1253270:intron 40.0%
TTGTTGCAGTTTGGATGATC+CGG + chr8_2:50670835-50670854 Msa1253270:intron 40.0%
GTGATGTCAATCGTAGATCA+TGG - chr8_2:50671294-50671313 None:intergenic 40.0%
TGCATACCTATTACAAGAGG+TGG + chr8_2:50672066-50672085 Msa1253270:CDS 40.0%
GCATACCTATTACAAGAGGT+GGG + chr8_2:50672067-50672086 Msa1253270:CDS 40.0%
CATACCTATTACAAGAGGTG+GGG + chr8_2:50672068-50672087 Msa1253270:CDS 40.0%
ATACCTATTACAAGAGGTGG+GGG + chr8_2:50672069-50672088 Msa1253270:CDS 40.0%
! GCGCTTAAATGATGGAGAAT+GGG + chr8_2:50672125-50672144 Msa1253270:CDS 40.0%
AAGAGTTATGCTTGTGTGGA+GGG - chr8_2:50672178-50672197 None:intergenic 40.0%
AAAGAGTTATGCTTGTGTGG+AGG - chr8_2:50672179-50672198 None:intergenic 40.0%
ACATCAACCGAGAAAAAGCA+AGG - chr8_2:50672278-50672297 None:intergenic 40.0%
GTAAGTAACAGACTCTCACT+AGG - chr8_2:50672455-50672474 None:intergenic 40.0%
CTTACTCTGTAGCATCCAAA+AGG + chr8_2:50672470-50672489 Msa1253270:intron 40.0%
TGAGAATGAATATTCAGGGG+AGG + chr8_2:50672501-50672520 Msa1253270:intron 40.0%
! TGGTTGCTAGAGCTTTGATT+TGG - chr8_2:50672630-50672649 None:intergenic 40.0%
CAATCTTTCTTGTGTGTCAC+TGG + chr8_2:50672860-50672879 Msa1253270:intron 40.0%
GGCTGCTTATCTTGAAAATG+TGG + chr8_2:50673065-50673084 Msa1253270:intron 40.0%
TTGCTAACGAGACTCAATTG+TGG - chr8_2:50673474-50673493 None:intergenic 40.0%
!! TCCTCTATTACGTTTTGGCA+GGG + chr8_2:50673552-50673571 Msa1253270:intron 40.0%
ATCTCCATAGAAGTTGCACA+CGG - chr8_2:50673584-50673603 None:intergenic 40.0%
!! TTGCATTTTAGTGCCCCAAA+TGG + chr8_2:50673686-50673705 Msa1253270:intron 40.0%
ACCCATAAGGCGATTGAAAT+GGG + chr8_2:50673815-50673834 Msa1253270:CDS 40.0%
GGCAATACAATCGGAGTTAT+AGG - chr8_2:50673867-50673886 None:intergenic 40.0%
!! CCAAAGGTATTAGAGGAAAG+AGG - chr8_2:50673930-50673949 None:intergenic 40.0%
CCTCTTTCCTCTAATACCTT+TGG + chr8_2:50673927-50673946 Msa1253270:intron 40.0%
ATACTTGCATAGCAACGGTT+AGG - chr8_2:50674835-50674854 None:intergenic 40.0%
GCTGGAAGGTCAAATTCAAT+TGG - chr8_2:50675056-50675075 None:intergenic 40.0%
ATAGCCATTTCACTCATTGC+TGG - chr8_2:50675074-50675093 None:intergenic 40.0%
GAATGAATCATTCCGAGACT+GGG - chr8_2:50675099-50675118 None:intergenic 40.0%
ATGATTCATTCCCTGCTATC+GGG + chr8_2:50675108-50675127 Msa1253270:CDS 40.0%
! TCCAAACCATCGGAAGTTTT+GGG - chr8_2:50675137-50675156 None:intergenic 40.0%
! ATCCAAACCATCGGAAGTTT+TGG - chr8_2:50675138-50675157 None:intergenic 40.0%
AGAGAAAATTCGTGTTGCCA+TGG + chr8_2:50675193-50675212 Msa1253270:CDS 40.0%
GTGTTGCCATGGAGAAATTA+AGG + chr8_2:50675204-50675223 Msa1253270:CDS 40.0%
CATCTTAAAAGGCTTAGGTG+GGG - chr8_2:50675266-50675285 None:intergenic 40.0%
TTGAGTGAGAACTCTCAACT+TGG + chr8_2:50675337-50675356 Msa1253270:three_prime_UTR 40.0%
TGAGTGAGAACTCTCAACTT+GGG + chr8_2:50675338-50675357 Msa1253270:three_prime_UTR 40.0%
!!! TTTTAGTTCTGTAGGGGCTT+TGG + chr8_2:50675389-50675408 Msa1253270:three_prime_UTR 40.0%
! ATCTAATTTTGGGCTGTGCA+TGG - chr8_2:50675430-50675449 None:intergenic 40.0%
ATGCACAGCCCAAAATTAGA+TGG + chr8_2:50675429-50675448 Msa1253270:three_prime_UTR 40.0%
TGCACAGCCCAAAATTAGAT+GGG + chr8_2:50675430-50675449 Msa1253270:three_prime_UTR 40.0%
GCTCAATCCTCTTATAGTCT+AGG + chr8_2:50675508-50675527 Msa1253270:three_prime_UTR 40.0%
TAGGATCCCTAGACTATAAG+AGG - chr8_2:50675518-50675537 None:intergenic 40.0%
TCTATGCGATCGTGTATTAC+AGG - chr8_2:50675708-50675727 None:intergenic 40.0%
ATAGAATGTCATGTGCTCCT+TGG + chr8_2:50675723-50675742 Msa1253270:three_prime_UTR 40.0%
TCCTTGGTTATTACTCCTCA+AGG + chr8_2:50675739-50675758 Msa1253270:three_prime_UTR 40.0%
ACCTTGAGGAGTAATAACCA+AGG - chr8_2:50675743-50675762 None:intergenic 40.0%
GAATCACTTCCGACTCTTGT+CGG + chr8_2:50670499-50670518 Msa1253270:five_prime_UTR 45.0%
! GCTGCTATTACGATTTTGCG+AGG - chr8_2:50670593-50670612 None:intergenic 45.0%
! AGATGAGACTGTTTTCGCGA+AGG - chr8_2:50670624-50670643 None:intergenic 45.0%
TTTGGATGATCCGGCAATGT+GGG + chr8_2:50670844-50670863 Msa1253270:CDS 45.0%
TGCTATAGTGAGTGCTACCA+TGG + chr8_2:50671089-50671108 Msa1253270:intron 45.0%
GCTATAGTGAGTGCTACCAT+GGG + chr8_2:50671090-50671109 Msa1253270:intron 45.0%
TGGATATTCAGCCTTCAGTG+CGG + chr8_2:50671171-50671190 Msa1253270:intron 45.0%
AACATCTCCAACGGCTATAG+CGG + chr8_2:50671222-50671241 Msa1253270:intron 45.0%
TAGGATGGGATAGGAACATG+TGG + chr8_2:50671587-50671606 Msa1253270:intron 45.0%
AGGATGGGATAGGAACATGT+GGG + chr8_2:50671588-50671607 Msa1253270:intron 45.0%
! CTTTGTTAGAGCACTCTAGC+AGG - chr8_2:50671625-50671644 None:intergenic 45.0%
TACCTATTACAAGAGGTGGG+GGG + chr8_2:50672070-50672089 Msa1253270:CDS 45.0%
! AGCACATGAATGAAGCGCTT+GGG + chr8_2:50672103-50672122 Msa1253270:CDS 45.0%
! GGCGCTTAAATGATGGAGAA+TGG + chr8_2:50672124-50672143 Msa1253270:CDS 45.0%
GATCCTAGAGGACAGATAGT+AGG + chr8_2:50672354-50672373 Msa1253270:intron 45.0%
AGTAGGCACCTATTGTCTCA+TGG + chr8_2:50672371-50672390 Msa1253270:intron 45.0%
GTAGGCACCTATTGTCTCAT+GGG + chr8_2:50672372-50672391 Msa1253270:intron 45.0%
! GTGTTGACCCATGAGACAAT+AGG - chr8_2:50672382-50672401 None:intergenic 45.0%
CTCATGGGTCAACACTTGAT+AGG + chr8_2:50672387-50672406 Msa1253270:intron 45.0%
GGGTCAACACTTGATAGGAA+AGG + chr8_2:50672392-50672411 Msa1253270:intron 45.0%
TGATAGGAAAGGTCTACACG+AGG + chr8_2:50672403-50672422 Msa1253270:intron 45.0%
TCTAAGAAAGTGGCCAGGAT+GGG + chr8_2:50672429-50672448 Msa1253270:intron 45.0%
! CTAGCAACCATTTTCTGCCA+TGG + chr8_2:50672640-50672659 Msa1253270:intron 45.0%
GAAGAGTAGCGATGCAAAGA+AGG + chr8_2:50672732-50672751 Msa1253270:intron 45.0%
GGATGTAAAAGAAGCCACTG+TGG + chr8_2:50672937-50672956 Msa1253270:intron 45.0%
AAGAAGCCACTGTGGTTTAG+TGG + chr8_2:50672945-50672964 Msa1253270:intron 45.0%
AGAAGCCACTGTGGTTTAGT+GGG + chr8_2:50672946-50672965 Msa1253270:intron 45.0%
!! CTCCTCTATTACGTTTTGGC+AGG + chr8_2:50673551-50673570 Msa1253270:intron 45.0%
ACCCTGCCAAAACGTAATAG+AGG - chr8_2:50673556-50673575 None:intergenic 45.0%
ATCTCCGTGTGCAACTTCTA+TGG + chr8_2:50673577-50673596 Msa1253270:intron 45.0%
! GGAAAAGTATGCAGCTGCAA+TGG - chr8_2:50673768-50673787 None:intergenic 45.0%
! CAGCTGCATACTTTTCCAGA+AGG + chr8_2:50673771-50673790 Msa1253270:intron 45.0%
ATCAAGACGATGCACCCATA+AGG + chr8_2:50673802-50673821 Msa1253270:CDS 45.0%
CACCCATAAGGCGATTGAAA+TGG + chr8_2:50673814-50673833 Msa1253270:CDS 45.0%
CCCCATTTCAATCGCCTTAT+GGG - chr8_2:50673819-50673838 None:intergenic 45.0%
CCCATAAGGCGATTGAAATG+GGG + chr8_2:50673816-50673835 Msa1253270:CDS 45.0%
TCCCCATTTCAATCGCCTTA+TGG - chr8_2:50673820-50673839 None:intergenic 45.0%
CAATCGGAGTTATAGGTGCA+CGG - chr8_2:50673860-50673879 None:intergenic 45.0%
!! TCGAACCCCAAAGGTATTAG+AGG - chr8_2:50673937-50673956 None:intergenic 45.0%
!! TCTAATACCTTTGGGGTTCG+AGG + chr8_2:50673936-50673955 Msa1253270:intron 45.0%
ACTACGAGCACAGTGCTTAT+TGG - chr8_2:50674620-50674639 None:intergenic 45.0%
! GTTTTTGCGCTGTCGTATTG+TGG + chr8_2:50674876-50674895 Msa1253270:intron 45.0%
CCATTTCACTCATTGCTGGA+AGG - chr8_2:50675070-50675089 None:intergenic 45.0%
CCTTCCAGCAATGAGTGAAA+TGG + chr8_2:50675067-50675086 Msa1253270:CDS 45.0%
AAATGGCTATTGCCCAGTCT+CGG + chr8_2:50675084-50675103 Msa1253270:CDS 45.0%
GGAATGAATCATTCCGAGAC+TGG - chr8_2:50675100-50675119 None:intergenic 45.0%
! AACTTCCGATGGTTTGGATG+AGG + chr8_2:50675139-50675158 Msa1253270:CDS 45.0%
GAGTGAGAACTCTCAACTTG+GGG + chr8_2:50675339-50675358 Msa1253270:three_prime_UTR 45.0%
! AATTTTGGGCTGTGCATGGA+GGG - chr8_2:50675426-50675445 None:intergenic 45.0%
! TAATTTTGGGCTGTGCATGG+AGG - chr8_2:50675427-50675446 None:intergenic 45.0%
! TTTTGCGAGGTATGCCGTGA+AGG - chr8_2:50670580-50670599 None:intergenic 50.0%
! AACGAGATGGAGGAGAGTGT+CGG - chr8_2:50670675-50670694 None:intergenic 50.0%
ACATGTGATTGCTGACGGTG+AGG - chr8_2:50670724-50670743 None:intergenic 50.0%
CGTGGACATGTGATTGCTGA+CGG - chr8_2:50670729-50670748 None:intergenic 50.0%
GTTTGGATGATCCGGCAATG+TGG + chr8_2:50670843-50670862 Msa1253270:intron 50.0%
TTGGATGATCCGGCAATGTG+GGG + chr8_2:50670845-50670864 Msa1253270:CDS 50.0%
TCCGGCAATGTGGGGATTTA+AGG + chr8_2:50670853-50670872 Msa1253270:CDS 50.0%
CCCTTAAATCCCCACATTGC+CGG - chr8_2:50670857-50670876 None:intergenic 50.0%
CCGGCAATGTGGGGATTTAA+GGG + chr8_2:50670854-50670873 Msa1253270:CDS 50.0%
TTCAGCAGCAAGAACCCATC+TGG - chr8_2:50670906-50670925 None:intergenic 50.0%
TAGTCAAATAGCGGCTCCCA+TGG - chr8_2:50671109-50671128 None:intergenic 50.0%
GATGTTGGAGGCTGCAATGA+AGG - chr8_2:50671208-50671227 None:intergenic 50.0%
ATAGCCGTTGGAGATGTTGG+AGG - chr8_2:50671220-50671239 None:intergenic 50.0%
GCTATAGCCGTTGGAGATGT+TGG - chr8_2:50671223-50671242 None:intergenic 50.0%
! GTTAGAGCACTCTAGCAGGA+AGG - chr8_2:50671621-50671640 None:intergenic 50.0%
ATCCCCCCACCTCTTGTAAT+AGG - chr8_2:50672075-50672094 None:intergenic 50.0%
! GAGCACATGAATGAAGCGCT+TGG + chr8_2:50672102-50672121 Msa1253270:CDS 50.0%
ATGCTTGTGTGGAGGGAAGA+AGG - chr8_2:50672171-50672190 None:intergenic 50.0%
GTGCCTACTATCTGTCCTCT+AGG - chr8_2:50672360-50672379 None:intergenic 50.0%
TAGGAAAGGTCTACACGAGG+CGG + chr8_2:50672406-50672425 Msa1253270:intron 50.0%
GTCTAAGAAAGTGGCCAGGA+TGG + chr8_2:50672428-50672447 Msa1253270:intron 50.0%
CCAACACTGATCAAGCTTCG+TGG - chr8_2:50672819-50672838 None:intergenic 50.0%
CCACGAAGCTTGATCAGTGT+TGG + chr8_2:50672816-50672835 Msa1253270:intron 50.0%
GTGTTCCCACTAAACCACAG+TGG - chr8_2:50672954-50672973 None:intergenic 50.0%
ATTCATTCCCTGCTATCGGG+TGG + chr8_2:50675111-50675130 Msa1253270:CDS 50.0%
GCCCAAAACTTCCGATGGTT+TGG + chr8_2:50675133-50675152 Msa1253270:CDS 50.0%
TGCTGCCTCATCCAAACCAT+CGG - chr8_2:50675147-50675166 None:intergenic 50.0%
TCACTTCCGACTCTTGTCGG+CGG + chr8_2:50670502-50670521 Msa1253270:five_prime_UTR 55.0%
!! GAGAGTGTCGGCGTTGTGAA+CGG - chr8_2:50670663-50670682 None:intergenic 55.0%
! GTCTGGAACGAACGAGATGG+AGG - chr8_2:50670685-50670704 None:intergenic 55.0%
! TGGGTCTGGAACGAACGAGA+TGG - chr8_2:50670688-50670707 None:intergenic 55.0%
CTCGTTCGTTCCAGACCCAA+AGG + chr8_2:50670689-50670708 Msa1253270:CDS 55.0%
GTGAGGAGAGGGATGCCTTT+GGG - chr8_2:50670707-50670726 None:intergenic 55.0%
GATTGCTGACGGTGAGGAGA+GGG - chr8_2:50670718-50670737 None:intergenic 55.0%
TGATTGCTGACGGTGAGGAG+AGG - chr8_2:50670719-50670738 None:intergenic 55.0%
AGAGAGAGAGAGAGCTGACG+TGG - chr8_2:50670747-50670766 None:intergenic 55.0%
! TCAGCCTTCAGTGCGGCTTT+TGG + chr8_2:50671178-50671197 Msa1253270:intron 55.0%
! CAGCCTTCAGTGCGGCTTTT+GGG + chr8_2:50671179-50671198 Msa1253270:intron 55.0%
CAACCCAAAAGCCGCACTGA+AGG - chr8_2:50671185-50671204 None:intergenic 55.0%
GCAGCCTCCAACATCTCCAA+CGG + chr8_2:50671213-50671232 Msa1253270:intron 55.0%
TATAGCGCCGCTATAGCCGT+TGG - chr8_2:50671232-50671251 None:intergenic 55.0%
GCGCTTGGGCGCTTAAATGA+TGG + chr8_2:50672117-50672136 Msa1253270:CDS 55.0%
CACGAGGCGGTCTAAGAAAG+TGG + chr8_2:50672419-50672438 Msa1253270:intron 55.0%
AGGCAATCCTCGAACCCCAA+AGG - chr8_2:50673946-50673965 None:intergenic 55.0%
! TTTTGGGCCACCCGATAGCA+GGG - chr8_2:50675121-50675140 None:intergenic 55.0%
CAGGATTCGCAGATCCGGTT+GGG + chr8_2:50675636-50675655 Msa1253270:three_prime_UTR 55.0%
TGCTTGAACCGCATCCCAAC+CGG - chr8_2:50675653-50675672 None:intergenic 55.0%
!! CGGTGGTGGGGAAAATGTCG+CGG + chr8_2:50670522-50670541 Msa1253270:exon 60.0%
TGGTGGGGAAAATGTCGCGG+CGG + chr8_2:50670525-50670544 Msa1253270:exon 60.0%
GAAAATGTCGCGGCGGACGA+TGG + chr8_2:50670532-50670551 Msa1253270:exon 60.0%
GCGAAGTCGGACCACCTTCA+CGG + chr8_2:50670563-50670582 Msa1253270:CDS 60.0%
TGCGAGGTATGCCGTGAAGG+TGG - chr8_2:50670577-50670596 None:intergenic 60.0%
!! AGTGTCGGCGTTGTGAACGG+AGG - chr8_2:50670660-50670679 None:intergenic 60.0%
GAGAGGGATGCCTTTGGGTC+TGG - chr8_2:50670702-50670721 None:intergenic 60.0%
GGTGAGGAGAGGGATGCCTT+TGG - chr8_2:50670708-50670727 None:intergenic 60.0%
GGCGGTCTAAGAAAGTGGCC+AGG + chr8_2:50672424-50672443 Msa1253270:intron 60.0%
GACTCTCACTAGGCCCATCC+TGG - chr8_2:50672445-50672464 None:intergenic 60.0%
!! GTTTTGGGCCACCCGATAGC+AGG - chr8_2:50675122-50675141 None:intergenic 60.0%
GGGTGGCCCAAAACTTCCGA+TGG + chr8_2:50675128-50675147 Msa1253270:CDS 60.0%
GTGCATGGAGGGTTGCGCAT+AGG - chr8_2:50675415-50675434 None:intergenic 60.0%
ACGGCCAGGATTCGCAGATC+CGG + chr8_2:50675631-50675650 Msa1253270:three_prime_UTR 60.0%
CCAACCGGATCTGCGAATCC+TGG - chr8_2:50675638-50675657 None:intergenic 60.0%
CCAGGATTCGCAGATCCGGT+TGG + chr8_2:50675635-50675654 Msa1253270:three_prime_UTR 60.0%
TCGCAGATCCGGTTGGGATG+CGG + chr8_2:50675642-50675661 Msa1253270:three_prime_UTR 60.0%
GGTTGGGATGCGGTTCAAGC+AGG + chr8_2:50675652-50675671 Msa1253270:three_prime_UTR 60.0%
CTTCCGACTCTTGTCGGCGG+TGG + chr8_2:50670505-50670524 Msa1253270:five_prime_UTR 65.0%
CCACCACCGCCGACAAGAGT+CGG - chr8_2:50670511-50670530 None:intergenic 65.0%
CGACTCTTGTCGGCGGTGGT+GGG + chr8_2:50670509-50670528 Msa1253270:five_prime_UTR 65.0%
GACTCTTGTCGGCGGTGGTG+GGG + chr8_2:50670510-50670529 Msa1253270:five_prime_UTR 65.0%
GATGGAGTGGGCGGCGAAGT+CGG + chr8_2:50670550-50670569 Msa1253270:CDS 65.0%
CCGACTCTTGTCGGCGGTGG+TGG + chr8_2:50670508-50670527 Msa1253270:five_prime_UTR 70.0%
TGTCGCGGCGGACGATGGAG+TGG + chr8_2:50670537-50670556 Msa1253270:CDS 70.0%
GTCGCGGCGGACGATGGAGT+GGG + chr8_2:50670538-50670557 Msa1253270:CDS 70.0%
GCGGCGGACGATGGAGTGGG+CGG + chr8_2:50670541-50670560 Msa1253270:CDS 75.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 50670489 50675792 50670489 ID=Msa1253270;Name=Msa1253270
chr8_2 mRNA 50670489 50675792 50670489 ID=Msa1253270-mRNA-1;Parent=Msa1253270;Name=Msa1253270-mRNA-1;_AED=0.27;_eAED=0.27;_QI=47|1|1|1|0.75|0.8|5|536|282
chr8_2 exon 50670489 50670747 50670489 ID=Msa1253270-mRNA-1:exon:15440;Parent=Msa1253270-mRNA-1
chr8_2 exon 50670844 50670971 50670844 ID=Msa1253270-mRNA-1:exon:15441;Parent=Msa1253270-mRNA-1
chr8_2 exon 50672061 50672146 50672061 ID=Msa1253270-mRNA-1:exon:15442;Parent=Msa1253270-mRNA-1
chr8_2 exon 50673774 50673911 50673774 ID=Msa1253270-mRNA-1:exon:15443;Parent=Msa1253270-mRNA-1
chr8_2 exon 50674972 50675792 50674972 ID=Msa1253270-mRNA-1:exon:15444;Parent=Msa1253270-mRNA-1
chr8_2 five_prime_UTR 50670489 50670535 50670489 ID=Msa1253270-mRNA-1:five_prime_utr;Parent=Msa1253270-mRNA-1
chr8_2 CDS 50670536 50670747 50670536 ID=Msa1253270-mRNA-1:cds;Parent=Msa1253270-mRNA-1
chr8_2 CDS 50670844 50670971 50670844 ID=Msa1253270-mRNA-1:cds;Parent=Msa1253270-mRNA-1
chr8_2 CDS 50672061 50672146 50672061 ID=Msa1253270-mRNA-1:cds;Parent=Msa1253270-mRNA-1
chr8_2 CDS 50673774 50673911 50673774 ID=Msa1253270-mRNA-1:cds;Parent=Msa1253270-mRNA-1
chr8_2 CDS 50674972 50675256 50674972 ID=Msa1253270-mRNA-1:cds;Parent=Msa1253270-mRNA-1
chr8_2 three_prime_UTR 50675257 50675792 50675257 ID=Msa1253270-mRNA-1:three_prime_utr;Parent=Msa1253270-mRNA-1
Gene Sequence

>Msa1253270

ATGTCGCGGCGGACGATGGAGTGGGCGGCGAAGTCGGACCACCTTCACGGCATACCTCGCAAAATCGTAATAGCAGCAGTCGGTTCCTTCGCGAAAACAGTCTCATCTCTCATCAACACAACCTCCGTTCACAACGCCGACACTCTCCTCCATCTCGTTCGTTCCAGACCCAAAGGCATCCCTCTCCTCACCGTCAGCAATCACATGTCCACTTTGGATGATCCGGCAATGTGGGGATTTAAGGGTTTTCCTATATTTGATACTAAGTTAGCCAGATGGGTTCTTGCTGCTGAAGATATTTGTTTTAGAAATCCACTTTATTCATATGTTTTTCGCACCGGAAAATGCATACCTATTACAAGAGGTGGGGGGATTTATCAAGAGCACATGAATGAAGCGCTTGGGCGCTTAAATGATGGAGAATGGCTGCATACTTTTCCAGAAGGAAAAGTTCATCAAGACGATGCACCCATAAGGCGATTGAAATGGGGAACTGCTAGTCTAATCGTCCGTGCACCTATAACTCCGATTGTATTGCCAATTGTTCATCATGGTTTTCATGAGGTGATGCCAGAGAAATATATGTTTGGTAGACGACCTCCTTTACCATTATGCAATAAGAAGATTAACATAATTATTGGCGATCCAATTGAATTTGACCTTCCAGCAATGAGTGAAATGGCTATTGCCCAGTCTCGGAATGATTCATTCCCTGCTATCGGGTGGCCCAAAACTTCCGATGGTTTGGATGAGGCAGCACAACGATATCTGTACACTACACTTTCAGAGAAAATTCGTGTTGCCATGGAGAAATTAAGGTGTTATGGTAAAAGTTTTCTGAAGTCTTAA
Protein sequence

>Msa1253270

MSRRTMEWAAKSDHLHGIPRKIVIAAVGSFAKTVSSLINTTSVHNADTLLHLVRSRPKGIPLLTVSNHMSTLDDPAMWGFKGFPIFDTKLARWVLAAEDICFRNPLYSYVFRTGKCIPITRGGGIYQEHMNEALGRLNDGEWLHTFPEGKVHQDDAPIRRLKWGTASLIVRAPITPIVLPIVHHGFHEVMPEKYMFGRRPPLPLCNKKINIIIGDPIEFDLPAMSEMAIAQSRNDSFPAIGWPKTSDGLDEAAQRYLYTTLSEKIRVAMEKLRCYGKSFLKS*