AlfalfaGEDB | Msa0010210

M. sativa cultivar zhongmu-4 / Msa0010210

KEGG: K03921
GO: GO:0005575 GO:0016020
PFAM: PF03405.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0010210	XP_013466413.1	97.692	390	7	1	1	388	1	390	0.0	791

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0010210	sp\|Q84VY3\|STAD6_ARATH	77.654	358	76	3	33	386	32	389	0.0	587

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0010210	Msa0104740	0.867259	1.561698e-65	-8.615850e-47
Msa0010210	Msa0128340	0.825114	5.591234e-54	-8.615850e-47
Msa0010210	Msa0128740	0.819387	1.193091e-52	-8.615850e-47
Msa0010210	Msa0161960	0.816906	4.343106e-52	-8.615850e-47
Msa0010210	Msa0227790	0.811297	7.510763e-51	-8.615850e-47
Msa0010210	Msa0228690	0.869008	4.270589e-66	-8.615850e-47
Msa0010210	Msa0541880	0.819779	9.706225e-53	-8.615850e-47
Msa0010210	Msa0541940	0.811498	6.795506e-51	-8.615850e-47
Msa0010210	Msa0572360	0.801144	1.034370e-48	-8.615850e-47
Msa0010210	Msa0575950	0.807066	6.060700e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0010210	MtrunA17_Chr1g0159321	97.692	390	7	1	1	388	1	390	791
Msa0010210	MtrunA17_Chr3g0126011	74.709	344	84	1	45	388	26	366	549
Msa0010210	MtrunA17_Chr3g0125981	71.191	361	94	2	26	386	18	368	536
Msa0010210	MtrunA17_Chr3g0125991	71.229	358	98	2	33	388	12	366	535
Msa0010210	MtrunA17_Chr3g0125781	70.857	350	99	1	39	388	23	369	533
Msa0010210	MtrunA17_Chr5g0406961	70.201	349	100	2	40	388	100	444	527
Msa0010210	MtrunA17_Chr4g0045661	70.201	349	100	2	40	388	49	393	525

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0010210	AT1G43800.1	77.654	358	76	3	33	386	32	389	0.0	587
Msa0010210	AT3G02630.1	70.145	345	100	2	42	386	53	394	0.0	520
Msa0010210	AT2G43710.2	68.768	349	105	2	40	388	57	401	0.0	511
Msa0010210	AT2G43710.1	68.768	349	105	2	40	388	57	401	0.0	511
Msa0010210	AT5G16240.1	67.536	345	109	2	42	386	51	392	9.03e-178	500
Msa0010210	AT5G16230.1	67.353	340	109	2	50	388	63	401	1.04e-173	490
Msa0010210	AT3G02610.2	68.222	343	103	4	50	388	73	413	1.08e-172	488
Msa0010210	AT3G02610.1	68.222	343	103	4	50	388	71	411	1.16e-172	488
Msa0010210	AT3G02620.1	63.636	374	120	6	26	388	35	403	3.98e-170	481
Msa0010210	AT3G02620.2	63.636	374	120	6	26	388	38	406	4.72e-170	481

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Find 118 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGTTCAGTATCTCAT+TGG	0.460584	1_1:+15261044	Msa0010210:CDS
AAACAAGGAACTTTGGGTAG+TGG	0.574143	1_1:+15262723	Msa0010210:three_prime_UTR
AACAAGGAACTTTGGGTAGT+GGG	0.472377	1_1:+15262724	Msa0010210:three_prime_UTR
AACACAACAAAATACTCATC+AGG	0.489365	1_1:-15260816	None:intergenic
AACGGCCCACGGGCTTGGAC+TGG	0.398332	1_1:-15260925	None:intergenic
AATGGCTAGCATTGCTCCCG+TGG	0.498130	1_1:-15262294	None:intergenic
AATTCATCAAATGGCAATGA+AGG	0.478762	1_1:-15260750	None:intergenic
ACAAGGAACTTTGGGTAGTG+GGG	0.541960	1_1:+15262725	Msa0010210:three_prime_UTR
ACAGAAAACAACCCATACTT+GGG	0.596760	1_1:+15262092	Msa0010210:CDS
ACAGCGCACCGGAGTTTACA+CGG	0.592150	1_1:+15262409	Msa0010210:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTAAGACACTTCCATTAACA+TGG	+	chr1_1:15260502-15260521	Msa0010210:CDS	30.0%
AATTCATCAAATGGCAATGA+AGG	-	chr1_1:15260753-15260772	None:intergenic	30.0%
AACACAACAAAATACTCATC+AGG	-	chr1_1:15260819-15260838	None:intergenic	30.0%
TTAATCATACTCTGATACGT+CGG	-	chr1_1:15260873-15260892	None:intergenic	30.0%
ACGTATCAGAGTATGATTAA+TGG	+	chr1_1:15260873-15260892	Msa0010210:CDS	30.0%
AGGACTTATTTGTATCTTTC+TGG	+	chr1_1:15260996-15261015	Msa0010210:CDS	30.0%
CTTATTTGTATCTTTCTGGA+AGG	+	chr1_1:15261000-15261019	Msa0010210:CDS	30.0%
AAAACTGTTCAGTATCTCAT+TGG	+	chr1_1:15261044-15261063	Msa0010210:CDS	30.0%
GGGATTCTATTTAGATAGAT+AGG	-	chr1_1:15261511-15261530	None:intergenic	30.0%
TATGTGATCAAACACAAACA+GGG	-	chr1_1:15261532-15261551	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	15260431	15262971	15260431	ID=Msa0010210;Name=Msa0010210
chr1_1	mRNA	15260431	15262971	15260431	ID=Msa0010210-mRNA-1;Parent=Msa0010210;Name=Msa0010210-mRNA-1;_AED=0.03;_eAED=0.03;_QI=46\|1\|1\|1\|1\|1\|2\|322\|388
chr1_1	exon	15260431	15261076	15260431	ID=Msa0010210-mRNA-1:exon:5598;Parent=Msa0010210-mRNA-1
chr1_1	exon	15262083	15262971	15262083	ID=Msa0010210-mRNA-1:exon:5599;Parent=Msa0010210-mRNA-1
chr1_1	five_prime_UTR	15260431	15260476	15260431	ID=Msa0010210-mRNA-1:five_prime_utr;Parent=Msa0010210-mRNA-1
chr1_1	CDS	15260477	15261076	15260477	ID=Msa0010210-mRNA-1:cds;Parent=Msa0010210-mRNA-1
chr1_1	CDS	15262083	15262649	15262083	ID=Msa0010210-mRNA-1:cds;Parent=Msa0010210-mRNA-1
chr1_1	three_prime_UTR	15262650	15262971	15262650	ID=Msa0010210-mRNA-1:three_prime_utr;Parent=Msa0010210-mRNA-1

Gene Sequence

>Msa0010210

ATGCATATTCAAACTTGTCACTCAATTAAGACACTTCCATTAACATGGAACATTCCAAAATCCATCAACCACCGACCACATCGCCACCTATTACCACCACCAAAATCCACCGTCACCACCACACCACCGTCGCTAAAAACGTCCAAAACCCACTCAATGCCACCAGAAAAGCTAGAAATTTTCAAATCACTAGAAAACTGGGCTTCTGAGTCTGTTTTACCACTACTAAAGCCAGTGGAACAATGCTGGCAGCCACAGAATTTTCTCCCTGATCCTTCATTGCCATTTGATGAATTTACTGATCAGGTGAAGGTCCTTCGTGATCGCACGAAGGACCTTCCTGATGAGTATTTTGTTGTGTTGGTTGGTGATATGGTGACGGAAGACGCGCTTCCGACGTATCAGAGTATGATTAATGGTCTTGATGGTGTTGGTGATGAGATTGGTTCCAGTCCAAGCCCGTGGGCCGTTTGGACACGGGCTTGGACTGCTGAAGAAAATAGACATGGGGATTTGCTTAGGACTTATTTGTATCTTTCTGGAAGGGTTGATATGGAGATGATTGAGAAAACTGTTCAGTATCTCATTGGAGCTGGCATGGACCCCGGGACAGAAAACAACCCATACTTGGGATTTGTATACACATCATTCCAAGAGCGAGCAACATTTGTATCACACGGAAACACGGCTCGCTTAGCGAAAGATGGCGGCGATCCAGTGCTTGCGCGCATATGTGGTACCATCGCAGCCGATGAAAAGCGTCATGAGAACGCATACTCAAAAATCGTCGAGAAGCTTCTAGAAATGGACCCCACGGGAGCAATGCTAGCCATTGGTGATATGATGGAGAAAAAAATCACAATGCCGGCACACCTTATGTATGATGGACAAGACCCTAAGCTATTCGAGCACTTCGCGGCTGTGGCACAGCGCACCGGAGTTTACACGGCCAATGATTACGCGGATATCTTGGAGTTTTTAATCGAACGGTGGAGATTGGAGAAGCTTGAAGGATTAACGGGTGAGGGAAAAAGGGCGCAGGATTTTGTGTGTGGGTTAGCACCTAGGATTAGAAGGTTGCAAGAGAGAGCTGATGCACGTGCTCGTAAGATGAAACCACATGGGGTCAAGTTTAGTTGGATTTTTAATAATGAGGTTGTTTTGTGA

Protein sequence

>Msa0010210

MHIQTCHSIKTLPLTWNIPKSINHRPHRHLLPPPKSTVTTTPPSLKTSKTHSMPPEKLEIFKSLENWASESVLPLLKPVEQCWQPQNFLPDPSLPFDEFTDQVKVLRDRTKDLPDEYFVVLVGDMVTEDALPTYQSMINGLDGVGDEIGSSPSPWAVWTRAWTAEENRHGDLLRTYLYLSGRVDMEMIEKTVQYLIGAGMDPGTENNPYLGFVYTSFQERATFVSHGNTARLAKDGGDPVLARICGTIAADEKRHENAYSKIVEKLLEMDPTGAMLAIGDMMEKKITMPAHLMYDGQDPKLFEHFAAVAQRTGVYTANDYADILEFLIERWRLEKLEGLTGEGKRAQDFVCGLAPRIRRLQERADARARKMKPHGVKFSWIFNNEVVL*