AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0010210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0010210 MtrunA17_Chr1g0159321 97.692 390 7 1 1 388 1 390 0.0 791
Msa0010210 MtrunA17_Chr3g0126011 74.709 344 84 1 45 388 26 366 0.0 549
Msa0010210 MtrunA17_Chr3g0125981 71.191 361 94 2 26 386 18 368 0.0 536
Msa0010210 MtrunA17_Chr3g0125991 71.229 358 98 2 33 388 12 366 0.0 535
Msa0010210 MtrunA17_Chr3g0125781 70.857 350 99 1 39 388 23 369 0.0 533
Msa0010210 MtrunA17_Chr5g0406961 70.201 349 100 2 40 388 100 444 0.0 527
Msa0010210 MtrunA17_Chr4g0045661 70.201 349 100 2 40 388 49 393 0.0 525
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0010210 AT1G43800.1 77.654 358 76 3 33 386 32 389 0.0 587
Msa0010210 AT3G02630.1 70.145 345 100 2 42 386 53 394 0.0 520
Msa0010210 AT2G43710.2 68.768 349 105 2 40 388 57 401 0.0 511
Msa0010210 AT2G43710.1 68.768 349 105 2 40 388 57 401 0.0 511
Msa0010210 AT5G16240.1 67.536 345 109 2 42 386 51 392 9.03e-178 500
Msa0010210 AT5G16230.1 67.353 340 109 2 50 388 63 401 1.04e-173 490
Msa0010210 AT3G02610.2 68.222 343 103 4 50 388 73 413 1.08e-172 488
Msa0010210 AT3G02610.1 68.222 343 103 4 50 388 71 411 1.16e-172 488
Msa0010210 AT3G02620.1 63.636 374 120 6 26 388 35 403 3.98e-170 481
Msa0010210 AT3G02620.2 63.636 374 120 6 26 388 38 406 4.72e-170 481
Msa0010210 AT5G16230.2 66.871 326 106 2 64 388 1 325 5.22e-165 465
Msa0010210 AT3G02620.3 66.869 329 103 4 64 388 1 327 5.89e-162 457

Find 118 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGACTTATTTGTATCTTTC+TGG 0.182339 1_1:+15260996 Msa0010210:CDS
GAGACTAGAGATTAAGAGTT+AGG 0.239531 1_1:+15262668 Msa0010210:three_prime_UTR
GTGTATACAAATCCCAAGTA+TGG 0.240289 1_1:-15262104 None:intergenic
GATTAACGGGTGAGGGAAAA+AGG 0.240677 1_1:+15262495 Msa0010210:CDS
TTTGGAATGTTCCATGTTAA+TGG 0.243926 1_1:-15260513 None:intergenic
TGTTGTGTTGGTTGGTGATA+TGG 0.248245 1_1:+15260830 Msa0010210:CDS
GGTCGGTGGTTGATGGATTT+TGG 0.248989 1_1:-15260531 None:intergenic
GTGGTGGTGACGGTGGATTT+TGG 0.310655 1_1:-15260576 None:intergenic
AGTTTGAATATGCATTGTTT+TGG 0.317713 1_1:-15260469 None:intergenic
TGGTGGCATTGAGTGGGTTT+TGG 0.321308 1_1:-15260619 None:intergenic
GTCCAAGCCCGTGGGCCGTT+TGG 0.332806 1_1:+15260928 Msa0010210:CDS
TCTTTCTGGAAGGGTTGATA+TGG 0.335225 1_1:+15261010 Msa0010210:CDS
GTCCAAACGGCCCACGGGCT+TGG 0.340343 1_1:-15260930 None:intergenic
GACACTAAACAAGGAACTTT+GGG 0.350550 1_1:+15262717 Msa0010210:three_prime_UTR
GTCTAATGTTGGAGAGGATA+TGG 0.373446 1_1:+15262791 Msa0010210:three_prime_UTR
ACGTATCAGAGTATGATTAA+TGG 0.377224 1_1:+15260873 Msa0010210:CDS
CAAGATATCCGCGTAATCAT+TGG 0.384695 1_1:-15262432 None:intergenic
GGCTGCCAGCATTGTTCCAC+TGG 0.386228 1_1:-15260708 None:intergenic
TGACACTAAACAAGGAACTT+TGG 0.390464 1_1:+15262716 Msa0010210:three_prime_UTR
CAATGATTACGCGGATATCT+TGG 0.392773 1_1:+15262433 Msa0010210:CDS
GGGCCGTTTGGACACGGGCT+TGG 0.396447 1_1:+15260940 Msa0010210:CDS
AACGGCCCACGGGCTTGGAC+TGG 0.398332 1_1:-15260925 None:intergenic
CACATGGGGTCAAGTTTAGT+TGG 0.400607 1_1:+15262600 Msa0010210:CDS
ATACAAATGTTGCTCGCTCT+TGG 0.405320 1_1:-15262133 None:intergenic
CGTCGAGAAGCTTCTAGAAA+TGG 0.405862 1_1:+15262268 Msa0010210:CDS
GCGATGTGGTCGGTGGTTGA+TGG 0.406929 1_1:-15260538 None:intergenic
TTTAATCGAACGGTGGAGAT+TGG 0.410251 1_1:+15262460 Msa0010210:CDS
GACAGAAAACAACCCATACT+TGG 0.410965 1_1:+15262091 Msa0010210:CDS
GGTTAGCACCTAGGATTAGA+AGG 0.411387 1_1:+15262537 Msa0010210:CDS
GATGGTGTTGGTGATGAGAT+TGG 0.415369 1_1:+15260900 Msa0010210:CDS
ATTTGATGAATTTACTGATC+AGG 0.419139 1_1:+15260761 Msa0010210:CDS
TCAAATGGCAATGAAGGATC+AGG 0.420107 1_1:-15260744 None:intergenic
AGACTAGAGATTAAGAGTTA+GGG 0.423729 1_1:+15262669 Msa0010210:three_prime_UTR
GCGAAGTGCTCGAATAGCTT+AGG 0.429820 1_1:-15262377 None:intergenic
GGAGAAGCTTGAAGGATTAA+CGG 0.433519 1_1:+15262481 Msa0010210:CDS
GCCCGTGGGCCGTTTGGACA+CGG 0.438549 1_1:+15260934 Msa0010210:CDS
TTTGCATTGGACAGGACCCC+GGG 0.454311 1_1:+15262069 Msa0010210:intron
TGATCAGTAAATTCATCAAA+TGG 0.459663 1_1:-15260759 None:intergenic
ATAGACATGGGGATTTGCTT+AGG 0.460553 1_1:+15260976 Msa0010210:CDS
AAAACTGTTCAGTATCTCAT+TGG 0.460584 1_1:+15261044 Msa0010210:CDS
AACAAGGAACTTTGGGTAGT+GGG 0.472377 1_1:+15262724 Msa0010210:three_prime_UTR
CCACATATGCGCGCAAGCAC+TGG 0.472837 1_1:-15262197 None:intergenic
AATTCATCAAATGGCAATGA+AGG 0.478762 1_1:-15260750 None:intergenic
CGAAGTGCTCGAATAGCTTA+GGG 0.481594 1_1:-15262376 None:intergenic
TTGTGTGTGGGTTAGCACCT+AGG 0.482074 1_1:+15262528 Msa0010210:CDS
GAGAAGCTTGAAGGATTAAC+GGG 0.482203 1_1:+15262482 Msa0010210:CDS
TGGAGATTGGAGAAGCTTGA+AGG 0.484791 1_1:+15262473 Msa0010210:CDS
CCAGTGCTTGCGCGCATATG+TGG 0.484813 1_1:+15262197 Msa0010210:CDS
ATTCGAGCACTTCGCGGCTG+TGG 0.485856 1_1:+15262385 Msa0010210:CDS
TCTTGCAACCTTCTAATCCT+AGG 0.486803 1_1:-15262545 None:intergenic
GCGGCTGTGGCACAGCGCAC+CGG 0.489252 1_1:+15262398 Msa0010210:CDS
AACACAACAAAATACTCATC+AGG 0.489365 1_1:-15260816 None:intergenic
CCGGCACACCTTATGTATGA+TGG 0.493314 1_1:+15262347 Msa0010210:CDS
GGTCTTGTCCATCATACATA+AGG 0.494290 1_1:-15262355 None:intergenic
TTATTTGTATCTTTCTGGAA+GGG 0.495330 1_1:+15261001 Msa0010210:CDS
AATGGCTAGCATTGCTCCCG+TGG 0.498130 1_1:-15262294 None:intergenic
GCCCGTGTCCAAACGGCCCA+CGG 0.499533 1_1:-15260936 None:intergenic
GATGTTGTTACTTGTTTGTG+TGG 0.503166 1_1:+15262825 Msa0010210:three_prime_UTR
CCCGTGGGCCGTTTGGACAC+GGG 0.513039 1_1:+15260935 Msa0010210:CDS
ATGGCTAGCATTGCTCCCGT+GGG 0.517421 1_1:-15262293 None:intergenic
CGACGGTGGTGTGGTGGTGA+CGG 0.521246 1_1:-15260586 None:intergenic
AGTCCAAGCCCGTGTCCAAA+CGG 0.523809 1_1:-15260943 None:intergenic
AGTATGATTAATGGTCTTGA+TGG 0.523991 1_1:+15260882 Msa0010210:CDS
TAAAGCCAGTGGAACAATGC+TGG 0.530542 1_1:+15260703 Msa0010210:CDS
TTTCTCCATCATATCACCAA+TGG 0.532359 1_1:-15262312 None:intergenic
GTAATAGGTGGCGATGTGGT+CGG 0.534786 1_1:-15260548 None:intergenic
ACGGGAGCAATGCTAGCCAT+TGG 0.537374 1_1:+15262296 Msa0010210:CDS
GTTTGCATTGGACAGGACCC+CGG 0.538725 1_1:+15262068 Msa0010210:intron
GCTAGCCATTGGTGATATGA+TGG 0.539965 1_1:+15262307 Msa0010210:CDS
TTGGTTCCAGTCCAAGCCCG+TGG 0.541070 1_1:+15260919 Msa0010210:CDS
ACAAGGAACTTTGGGTAGTG+GGG 0.541960 1_1:+15262725 Msa0010210:three_prime_UTR
CTTATTTGTATCTTTCTGGA+AGG 0.544191 1_1:+15261000 Msa0010210:CDS
CCATCATACATAAGGTGTGC+CGG 0.547215 1_1:-15262347 None:intergenic
GTTCAGTATCTCATTGGAGC+TGG 0.553993 1_1:+15261050 Msa0010210:CDS
TTTCAAATCACTAGAAAACT+GGG 0.554024 1_1:+15260656 Msa0010210:CDS
TAAGCTATTCGAGCACTTCG+CGG 0.554539 1_1:+15262379 Msa0010210:CDS
CCCGTGTCCAAACGGCCCAC+GGG 0.555548 1_1:-15260935 None:intergenic
GTATCTCATTGGAGCTGGCA+TGG 0.555720 1_1:+15261055 Msa0010210:CDS
TGTTCCACTGGCTTTAGTAG+TGG 0.556461 1_1:-15260696 None:intergenic
ACGGCTCGCTTAGCGAAAGA+TGG 0.564465 1_1:+15262167 Msa0010210:CDS
AAACAAGGAACTTTGGGTAG+TGG 0.574143 1_1:+15262723 Msa0010210:three_prime_UTR
CGGTGGTGTGGTGGTGACGG+TGG 0.585453 1_1:-15260583 None:intergenic
ATTAATGGTCTTGATGGTGT+TGG 0.585459 1_1:+15260888 Msa0010210:CDS
GCTTGAAGGATTAACGGGTG+AGG 0.586573 1_1:+15262487 Msa0010210:CDS
TGTATACAAATCCCAAGTAT+GGG 0.587703 1_1:-15262103 None:intergenic
ACAGCGCACCGGAGTTTACA+CGG 0.592150 1_1:+15262409 Msa0010210:CDS
ATCATTGGCCGTGTAAACTC+CGG 0.595715 1_1:-15262417 None:intergenic
CTTGAAGGATTAACGGGTGA+GGG 0.596019 1_1:+15262488 Msa0010210:CDS
TTAAGACACTTCCATTAACA+TGG 0.596362 1_1:+15260502 Msa0010210:CDS
ACAGAAAACAACCCATACTT+GGG 0.596760 1_1:+15262092 Msa0010210:CDS
CAACTAAACTTGACCCCATG+TGG 0.598754 1_1:-15262599 None:intergenic
TGAATTTACTGATCAGGTGA+AGG 0.600944 1_1:+15260767 Msa0010210:CDS
GTTGGTTGGTGATATGGTGA+CGG 0.602166 1_1:+15260836 Msa0010210:CDS
GCTTCTAGAAATGGACCCCA+CGG 0.602940 1_1:+15262277 Msa0010210:CDS
CGAGCAACATTTGTATCACA+CGG 0.621285 1_1:+15262140 Msa0010210:CDS
TGGTTCCAGTCCAAGCCCGT+GGG 0.621792 1_1:+15260920 Msa0010210:CDS
ATTTGTATCACACGGAAACA+CGG 0.623224 1_1:+15262148 Msa0010210:CDS
TTAATCATACTCTGATACGT+CGG 0.624523 1_1:-15260870 None:intergenic
CAAATGGCAATGAAGGATCA+GGG 0.626451 1_1:-15260743 None:intergenic
CAACAAAATACTCATCAGGA+AGG 0.632422 1_1:-15260812 None:intergenic
CTTCTAGAAATGGACCCCAC+GGG 0.638314 1_1:+15262278 Msa0010210:CDS
ATAGGTGGCGATGTGGTCGG+TGG 0.643329 1_1:-15260545 None:intergenic
CTCGTAAGATGAAACCACAT+GGG 0.643536 1_1:+15262585 Msa0010210:CDS
CAAGGAACTTTGGGTAGTGG+GGG 0.645435 1_1:+15262726 Msa0010210:three_prime_UTR
CTGCTGAAGAAAATAGACAT+GGG 0.645814 1_1:+15260964 Msa0010210:CDS
GCTCGCTTAGCGAAAGATGG+CGG 0.654478 1_1:+15262170 Msa0010210:CDS
GCTCGTAAGATGAAACCACA+TGG 0.658763 1_1:+15262584 Msa0010210:CDS
GGTGGTAATAGGTGGCGATG+TGG 0.665415 1_1:-15260552 None:intergenic
TGCTGAAGAAAATAGACATG+GGG 0.668352 1_1:+15260965 Msa0010210:CDS
TGGCTAGCATTGCTCCCGTG+GGG 0.669064 1_1:-15262292 None:intergenic
ACTGCTGAAGAAAATAGACA+TGG 0.671679 1_1:+15260963 Msa0010210:CDS
TTTACCACTACTAAAGCCAG+TGG 0.671826 1_1:+15260692 Msa0010210:CDS
ACTAATCTTGACACTAAACA+AGG 0.675822 1_1:+15262708 Msa0010210:three_prime_UTR
GGTCCTTCGTGCGATCACGA+AGG 0.703598 1_1:-15260791 None:intergenic
GGATCAGGGAGAAAATTCTG+TGG 0.710660 1_1:-15260729 None:intergenic
GGTCCTTCGTGATCGCACGA+AGG 0.710721 1_1:+15260788 Msa0010210:CDS
TTACACGGCCAATGATTACG+CGG 0.711680 1_1:+15262424 Msa0010210:CDS
TCGTAAGATGAAACCACATG+GGG 0.759922 1_1:+15262586 Msa0010210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAATAATTAGATAAAT+TGG + chr1_1:15261161-15261180 Msa0010210:intron 10.0%
!! TTCAAAAATAAATCTATAAT+AGG + chr1_1:15261472-15261491 Msa0010210:intron 10.0%
!! TCAAAAATAAATCTATAATA+GGG + chr1_1:15261473-15261492 Msa0010210:intron 10.0%
!! TTGAAAAATTTCTTATATTA+AGG - chr1_1:15261759-15261778 None:intergenic 10.0%
!!! AAATTTTTCAAAAAAAGTTT+TGG + chr1_1:15261768-15261787 Msa0010210:intron 10.0%
!! CTTATTATTAATTTAAGTGA+TGG + chr1_1:15261198-15261217 Msa0010210:intron 15.0%
!! TTATATGAAACCAAAAATAA+TGG + chr1_1:15261664-15261683 Msa0010210:intron 15.0%
!! AAAAGACAAATATTAAATGA+GGG - chr1_1:15261856-15261875 None:intergenic 15.0%
!! AAAAAGACAAATATTAAATG+AGG - chr1_1:15261857-15261876 None:intergenic 15.0%
!! TAATAAACAAAATGTTGTCT+TGG + chr1_1:15261275-15261294 Msa0010210:intron 20.0%
!! AAATTTCTTATATTAAGGAC+CGG - chr1_1:15261754-15261773 None:intergenic 20.0%
!!! TGGTTTTTCTTCTTATATTA+AGG + chr1_1:15261984-15262003 Msa0010210:intron 20.0%
!!! GTAGACATTATTTTCAAATT+AGG - chr1_1:15262038-15262057 None:intergenic 20.0%
!!! ACATTAAATTTTGTTTGCAT+TGG + chr1_1:15262056-15262075 Msa0010210:intron 20.0%
!!! TAGTTGGATTTTTAATAATG+AGG + chr1_1:15262616-15262635 Msa0010210:CDS 20.0%
!!! TTTGTGAGTTTTTTTTCTTT+AGG + chr1_1:15262643-15262662 Msa0010210:exon 20.0%
!! AGTTTGAATATGCATTGTTT+TGG - chr1_1:15260472-15260491 None:intergenic 25.0%
!!! TTGAAAATTTCTAGCTTTTC+TGG - chr1_1:15260642-15260661 None:intergenic 25.0%
!! TTTTCAAATCACTAGAAAAC+TGG + chr1_1:15260655-15260674 Msa0010210:CDS 25.0%
! TTTCAAATCACTAGAAAACT+GGG + chr1_1:15260656-15260675 Msa0010210:CDS 25.0%
! TGATCAGTAAATTCATCAAA+TGG - chr1_1:15260762-15260781 None:intergenic 25.0%
! ATTTGATGAATTTACTGATC+AGG + chr1_1:15260761-15260780 Msa0010210:CDS 25.0%
!! TTATTTGTATCTTTCTGGAA+GGG + chr1_1:15261001-15261020 Msa0010210:CDS 25.0%
!! TGTACATTTTATTGCAATCT+AGG + chr1_1:15261132-15261151 Msa0010210:intron 25.0%
! TATATGATCAGAGATACTAA+TGG - chr1_1:15261451-15261470 None:intergenic 25.0%
!!! AGAATACTCTGTTTTGTTTT+TGG + chr1_1:15261573-15261592 Msa0010210:intron 25.0%
!!! GAATACTCTGTTTTGTTTTT+GGG + chr1_1:15261574-15261593 Msa0010210:intron 25.0%
!! CATGAAAACTCCATTATTTT+TGG - chr1_1:15261677-15261696 None:intergenic 25.0%
! ATGTTTCACAACATTCTATA+AGG + chr1_1:15261897-15261916 Msa0010210:intron 25.0%
! TGTTTCACAACATTCTATAA+GGG + chr1_1:15261898-15261917 Msa0010210:intron 25.0%
!!! ACATTGGTTTTGATGTTTTT+TGG + chr1_1:15261964-15261983 Msa0010210:intron 25.0%
! TTTCTTCTTATATTAAGGAC+CGG + chr1_1:15261989-15262008 Msa0010210:intron 25.0%
!!! ATGTATTTTGAGTCTAATGT+TGG + chr1_1:15262780-15262799 Msa0010210:three_prime_UTR 25.0%
! TTTTGGATTTGATACTAGCT+AGG - chr1_1:15260455-15260474 None:intergenic 30.0%
TTAAGACACTTCCATTAACA+TGG + chr1_1:15260502-15260521 Msa0010210:CDS 30.0%
! TTTGGAATGTTCCATGTTAA+TGG - chr1_1:15260516-15260535 None:intergenic 30.0%
!!! AAAATTTCTAGCTTTTCTGG+TGG - chr1_1:15260639-15260658 None:intergenic 30.0%
AATTCATCAAATGGCAATGA+AGG - chr1_1:15260753-15260772 None:intergenic 30.0%
AACACAACAAAATACTCATC+AGG - chr1_1:15260819-15260838 None:intergenic 30.0%
!! TGATGAGTATTTTGTTGTGT+TGG + chr1_1:15260818-15260837 Msa0010210:CDS 30.0%
TTAATCATACTCTGATACGT+CGG - chr1_1:15260873-15260892 None:intergenic 30.0%
ACGTATCAGAGTATGATTAA+TGG + chr1_1:15260873-15260892 Msa0010210:CDS 30.0%
! AGTATGATTAATGGTCTTGA+TGG + chr1_1:15260882-15260901 Msa0010210:CDS 30.0%
AGGACTTATTTGTATCTTTC+TGG + chr1_1:15260996-15261015 Msa0010210:CDS 30.0%
CTTATTTGTATCTTTCTGGA+AGG + chr1_1:15261000-15261019 Msa0010210:CDS 30.0%
AAAACTGTTCAGTATCTCAT+TGG + chr1_1:15261044-15261063 Msa0010210:CDS 30.0%
GGGATTCTATTTAGATAGAT+AGG - chr1_1:15261511-15261530 None:intergenic 30.0%
TATGTGATCAAACACAAACA+GGG - chr1_1:15261532-15261551 None:intergenic 30.0%
ATATGTGATCAAACACAAAC+AGG - chr1_1:15261533-15261552 None:intergenic 30.0%
GTATTCTGTGATCAAATGAA+AGG - chr1_1:15261560-15261579 None:intergenic 30.0%
! AACAGTAACACATTCTGTTT+TGG - chr1_1:15261601-15261620 None:intergenic 30.0%
! AATGGAGTTTTCATGTGTTA+CGG + chr1_1:15261682-15261701 Msa0010210:intron 30.0%
ACTTAATAATATAGTCCCTC+CGG + chr1_1:15261732-15261751 Msa0010210:intron 30.0%
TGTGACAGTTGCTTATAAAT+AGG - chr1_1:15261795-15261814 None:intergenic 30.0%
ACAACAATTAATGCTGACAT+TGG + chr1_1:15261948-15261967 Msa0010210:intron 30.0%
!! AAATTTTGTTTGCATTGGAC+AGG + chr1_1:15262061-15262080 Msa0010210:intron 30.0%
TGTATACAAATCCCAAGTAT+GGG - chr1_1:15262106-15262125 None:intergenic 30.0%
! TCTTGGAGTTTTTAATCGAA+CGG + chr1_1:15262450-15262469 Msa0010210:CDS 30.0%
AGACTAGAGATTAAGAGTTA+GGG + chr1_1:15262669-15262688 Msa0010210:three_prime_UTR 30.0%
ACTAATCTTGACACTAAACA+AGG + chr1_1:15262708-15262727 Msa0010210:three_prime_UTR 30.0%
TTGTGTGGATGAAAAATAGT+TGG + chr1_1:15262840-15262859 Msa0010210:three_prime_UTR 30.0%
TGTGTGGATGAAAAATAGTT+GGG + chr1_1:15262841-15262860 Msa0010210:three_prime_UTR 30.0%
! TGAAAAATAGTTGGGACTTT+TGG + chr1_1:15262849-15262868 Msa0010210:three_prime_UTR 30.0%
TGAATTTACTGATCAGGTGA+AGG + chr1_1:15260767-15260786 Msa0010210:CDS 35.0%
CAACAAAATACTCATCAGGA+AGG - chr1_1:15260815-15260834 None:intergenic 35.0%
!! GAGTATTTTGTTGTGTTGGT+TGG + chr1_1:15260822-15260841 Msa0010210:CDS 35.0%
!! ATTAATGGTCTTGATGGTGT+TGG + chr1_1:15260888-15260907 Msa0010210:CDS 35.0%
ACTGCTGAAGAAAATAGACA+TGG + chr1_1:15260963-15260982 Msa0010210:CDS 35.0%
CTGCTGAAGAAAATAGACAT+GGG + chr1_1:15260964-15260983 Msa0010210:CDS 35.0%
TGCTGAAGAAAATAGACATG+GGG + chr1_1:15260965-15260984 Msa0010210:CDS 35.0%
! TGATGGATAGTCATAGTAGT+AGG + chr1_1:15261215-15261234 Msa0010210:intron 35.0%
!! TCATAGTAGTAGGAGTGTTT+AGG + chr1_1:15261225-15261244 Msa0010210:intron 35.0%
ATGGAAAGCAACATTGAAAG+AGG - chr1_1:15261432-15261451 None:intergenic 35.0%
ATGTGATCAAACACAAACAG+GGG - chr1_1:15261531-15261550 None:intergenic 35.0%
TTCTTATATTAAGGACCGGA+GGG - chr1_1:15261993-15262012 None:intergenic 35.0%
TTTCTTATATTAAGGACCGG+AGG - chr1_1:15261751-15261770 None:intergenic 35.0%
! AGCAACTGTCACAACTTTTA+AGG + chr1_1:15261802-15261821 Msa0010210:intron 35.0%
TTCTTATATTAAGGACCGGA+GGG + chr1_1:15261993-15262012 Msa0010210:intron 35.0%
ACAGAAAACAACCCATACTT+GGG + chr1_1:15262092-15262111 Msa0010210:CDS 35.0%
GTGTATACAAATCCCAAGTA+TGG - chr1_1:15262107-15262126 None:intergenic 35.0%
ATTTGTATCACACGGAAACA+CGG + chr1_1:15262148-15262167 Msa0010210:CDS 35.0%
TTTCTCCATCATATCACCAA+TGG - chr1_1:15262315-15262334 None:intergenic 35.0%
GGAGAAAAAAATCACAATGC+CGG + chr1_1:15262328-15262347 Msa0010210:CDS 35.0%
GAGACTAGAGATTAAGAGTT+AGG + chr1_1:15262668-15262687 Msa0010210:three_prime_UTR 35.0%
TGACACTAAACAAGGAACTT+TGG + chr1_1:15262716-15262735 Msa0010210:three_prime_UTR 35.0%
GACACTAAACAAGGAACTTT+GGG + chr1_1:15262717-15262736 Msa0010210:three_prime_UTR 35.0%
!! TTTTGAGTCTAATGTTGGAG+AGG + chr1_1:15262785-15262804 Msa0010210:three_prime_UTR 35.0%
! GATGTTGTTACTTGTTTGTG+TGG + chr1_1:15262825-15262844 Msa0010210:three_prime_UTR 35.0%
!!! ATTTTGGTGGTGGTAATAGG+TGG - chr1_1:15260563-15260582 None:intergenic 40.0%
!!! TGGATTTTGGTGGTGGTAAT+AGG - chr1_1:15260566-15260585 None:intergenic 40.0%
!!! GTTTTGGACGTTTTTAGCGA+CGG - chr1_1:15260606-15260625 None:intergenic 40.0%
TTTACCACTACTAAAGCCAG+TGG + chr1_1:15260692-15260711 Msa0010210:CDS 40.0%
CAAATGGCAATGAAGGATCA+GGG - chr1_1:15260746-15260765 None:intergenic 40.0%
TCAAATGGCAATGAAGGATC+AGG - chr1_1:15260747-15260766 None:intergenic 40.0%
!! TGTTGTGTTGGTTGGTGATA+TGG + chr1_1:15260830-15260849 Msa0010210:CDS 40.0%
! ATAGACATGGGGATTTGCTT+AGG + chr1_1:15260976-15260995 Msa0010210:CDS 40.0%
!! TCTTTCTGGAAGGGTTGATA+TGG + chr1_1:15261010-15261029 Msa0010210:CDS 40.0%
!! TAGTAGTAGGAGTGTTTAGG+TGG + chr1_1:15261228-15261247 Msa0010210:intron 40.0%
CTTCTTATATTAAGGACCGG+AGG + chr1_1:15261992-15262011 Msa0010210:intron 40.0%
GACAGAAAACAACCCATACT+TGG + chr1_1:15262091-15262110 Msa0010210:CDS 40.0%
ATACAAATGTTGCTCGCTCT+TGG - chr1_1:15262136-15262155 None:intergenic 40.0%
CGAGCAACATTTGTATCACA+CGG + chr1_1:15262140-15262159 Msa0010210:CDS 40.0%
! GTTCTCATGACGCTTTTCAT+CGG - chr1_1:15262234-15262253 None:intergenic 40.0%
! GGTCTTGTCCATCATACATA+AGG - chr1_1:15262358-15262377 None:intergenic 40.0%
CAAGATATCCGCGTAATCAT+TGG - chr1_1:15262435-15262454 None:intergenic 40.0%
CAATGATTACGCGGATATCT+TGG + chr1_1:15262433-15262452 Msa0010210:CDS 40.0%
! TGGAGTTTTTAATCGAACGG+TGG + chr1_1:15262453-15262472 Msa0010210:CDS 40.0%
TTTAATCGAACGGTGGAGAT+TGG + chr1_1:15262460-15262479 Msa0010210:CDS 40.0%
GGAGAAGCTTGAAGGATTAA+CGG + chr1_1:15262481-15262500 Msa0010210:CDS 40.0%
GAGAAGCTTGAAGGATTAAC+GGG + chr1_1:15262482-15262501 Msa0010210:CDS 40.0%
! ATTAACGGGTGAGGGAAAAA+GGG + chr1_1:15262496-15262515 Msa0010210:CDS 40.0%
TCTTGCAACCTTCTAATCCT+AGG - chr1_1:15262548-15262567 None:intergenic 40.0%
CTCGTAAGATGAAACCACAT+GGG + chr1_1:15262585-15262604 Msa0010210:CDS 40.0%
TCGTAAGATGAAACCACATG+GGG + chr1_1:15262586-15262605 Msa0010210:CDS 40.0%
AAACAAGGAACTTTGGGTAG+TGG + chr1_1:15262723-15262742 Msa0010210:three_prime_UTR 40.0%
AACAAGGAACTTTGGGTAGT+GGG + chr1_1:15262724-15262743 Msa0010210:three_prime_UTR 40.0%
GTCTAATGTTGGAGAGGATA+TGG + chr1_1:15262791-15262810 Msa0010210:three_prime_UTR 40.0%
!! CTTTTCTGGTGGCATTGAGT+GGG - chr1_1:15260628-15260647 None:intergenic 45.0%
!! TGTTCCACTGGCTTTAGTAG+TGG - chr1_1:15260699-15260718 None:intergenic 45.0%
TAAAGCCAGTGGAACAATGC+TGG + chr1_1:15260703-15260722 Msa0010210:CDS 45.0%
GGATCAGGGAGAAAATTCTG+TGG - chr1_1:15260732-15260751 None:intergenic 45.0%
!! GTTGGTTGGTGATATGGTGA+CGG + chr1_1:15260836-15260855 Msa0010210:CDS 45.0%
!! GATGGTGTTGGTGATGAGAT+TGG + chr1_1:15260900-15260919 Msa0010210:CDS 45.0%
GTTCAGTATCTCATTGGAGC+TGG + chr1_1:15261050-15261069 Msa0010210:CDS 45.0%
GTCCATTTAGTTACTCCCTC+CGG - chr1_1:15262011-15262030 None:intergenic 45.0%
!! TATGGGTTGTTTTCTGTCCC+GGG - chr1_1:15262089-15262108 None:intergenic 45.0%
!! GTATGGGTTGTTTTCTGTCC+CGG - chr1_1:15262090-15262109 None:intergenic 45.0%
! CGTCGAGAAGCTTCTAGAAA+TGG + chr1_1:15262268-15262287 Msa0010210:CDS 45.0%
! GCTAGCCATTGGTGATATGA+TGG + chr1_1:15262307-15262326 Msa0010210:CDS 45.0%
CCATCATACATAAGGTGTGC+CGG - chr1_1:15262350-15262369 None:intergenic 45.0%
! CGAAGTGCTCGAATAGCTTA+GGG - chr1_1:15262379-15262398 None:intergenic 45.0%
TAAGCTATTCGAGCACTTCG+CGG + chr1_1:15262379-15262398 Msa0010210:CDS 45.0%
ATCATTGGCCGTGTAAACTC+CGG - chr1_1:15262420-15262439 None:intergenic 45.0%
TTACACGGCCAATGATTACG+CGG + chr1_1:15262424-15262443 Msa0010210:CDS 45.0%
TGGAGATTGGAGAAGCTTGA+AGG + chr1_1:15262473-15262492 Msa0010210:CDS 45.0%
! CTTGAAGGATTAACGGGTGA+GGG + chr1_1:15262488-15262507 Msa0010210:CDS 45.0%
! GATTAACGGGTGAGGGAAAA+AGG + chr1_1:15262495-15262514 Msa0010210:CDS 45.0%
GGTTAGCACCTAGGATTAGA+AGG + chr1_1:15262537-15262556 Msa0010210:CDS 45.0%
GCTCGTAAGATGAAACCACA+TGG + chr1_1:15262584-15262603 Msa0010210:CDS 45.0%
CAACTAAACTTGACCCCATG+TGG - chr1_1:15262602-15262621 None:intergenic 45.0%
CACATGGGGTCAAGTTTAGT+TGG + chr1_1:15262600-15262619 Msa0010210:CDS 45.0%
ACAAGGAACTTTGGGTAGTG+GGG + chr1_1:15262725-15262744 Msa0010210:three_prime_UTR 45.0%
!!! GGTCGGTGGTTGATGGATTT+TGG - chr1_1:15260534-15260553 None:intergenic 50.0%
GTAATAGGTGGCGATGTGGT+CGG - chr1_1:15260551-15260570 None:intergenic 50.0%
!!! TTGGACGTTTTTAGCGACGG+TGG - chr1_1:15260603-15260622 None:intergenic 50.0%
!! TGGTGGCATTGAGTGGGTTT+TGG - chr1_1:15260622-15260641 None:intergenic 50.0%
!! GCTTTTCTGGTGGCATTGAG+TGG - chr1_1:15260629-15260648 None:intergenic 50.0%
GTATCTCATTGGAGCTGGCA+TGG + chr1_1:15261055-15261074 Msa0010210:CDS 50.0%
GACCGGAGGGAGTAACTAAA+TGG + chr1_1:15262006-15262025 Msa0010210:intron 50.0%
!! ATGGGTTGTTTTCTGTCCCG+GGG - chr1_1:15262088-15262107 None:intergenic 50.0%
! GCTTCTAGAAATGGACCCCA+CGG + chr1_1:15262277-15262296 Msa0010210:CDS 50.0%
! CTTCTAGAAATGGACCCCAC+GGG + chr1_1:15262278-15262297 Msa0010210:CDS 50.0%
CCGGCACACCTTATGTATGA+TGG + chr1_1:15262347-15262366 Msa0010210:CDS 50.0%
! GCGAAGTGCTCGAATAGCTT+AGG - chr1_1:15262380-15262399 None:intergenic 50.0%
! GCTTGAAGGATTAACGGGTG+AGG + chr1_1:15262487-15262506 Msa0010210:CDS 50.0%
!! TTGTGTGTGGGTTAGCACCT+AGG + chr1_1:15262528-15262547 Msa0010210:CDS 50.0%
! CAAGGAACTTTGGGTAGTGG+GGG + chr1_1:15262726-15262745 Msa0010210:three_prime_UTR 50.0%
GGTGGTAATAGGTGGCGATG+TGG - chr1_1:15260555-15260574 None:intergenic 55.0%
!! GTGACGGTGGATTTTGGTGG+TGG - chr1_1:15260573-15260592 None:intergenic 55.0%
!!! GTGGTGACGGTGGATTTTGG+TGG - chr1_1:15260576-15260595 None:intergenic 55.0%
!!! GTGGTGGTGACGGTGGATTT+TGG - chr1_1:15260579-15260598 None:intergenic 55.0%
! TTTTAGCGACGGTGGTGTGG+TGG - chr1_1:15260595-15260614 None:intergenic 55.0%
!!! CGTTTTTAGCGACGGTGGTG+TGG - chr1_1:15260598-15260617 None:intergenic 55.0%
AGTCCAAGCCCGTGTCCAAA+CGG - chr1_1:15260946-15260965 None:intergenic 55.0%
GTTTGCATTGGACAGGACCC+CGG + chr1_1:15262068-15262087 Msa0010210:intron 55.0%
TTTGCATTGGACAGGACCCC+GGG + chr1_1:15262069-15262088 Msa0010210:intron 55.0%
ACGGCTCGCTTAGCGAAAGA+TGG + chr1_1:15262167-15262186 Msa0010210:CDS 55.0%
GCTCGCTTAGCGAAAGATGG+CGG + chr1_1:15262170-15262189 Msa0010210:CDS 55.0%
!! ACGCTTTTCATCGGCTGCGA+TGG - chr1_1:15262225-15262244 None:intergenic 55.0%
ATGGCTAGCATTGCTCCCGT+GGG - chr1_1:15262296-15262315 None:intergenic 55.0%
AATGGCTAGCATTGCTCCCG+TGG - chr1_1:15262297-15262316 None:intergenic 55.0%
ACGGGAGCAATGCTAGCCAT+TGG + chr1_1:15262296-15262315 Msa0010210:CDS 55.0%
ACAGCGCACCGGAGTTTACA+CGG + chr1_1:15262409-15262428 Msa0010210:CDS 55.0%
! AGGGCGCAGGATTTTGTGTG+TGG + chr1_1:15262515-15262534 Msa0010210:CDS 55.0%
! GGGCGCAGGATTTTGTGTGT+GGG + chr1_1:15262516-15262535 Msa0010210:CDS 55.0%
GCGATGTGGTCGGTGGTTGA+TGG - chr1_1:15260541-15260560 None:intergenic 60.0%
ATAGGTGGCGATGTGGTCGG+TGG - chr1_1:15260548-15260567 None:intergenic 60.0%
GGCTGCCAGCATTGTTCCAC+TGG - chr1_1:15260711-15260730 None:intergenic 60.0%
GGTCCTTCGTGATCGCACGA+AGG + chr1_1:15260788-15260807 Msa0010210:CDS 60.0%
GGTCCTTCGTGCGATCACGA+AGG - chr1_1:15260794-15260813 None:intergenic 60.0%
TTGGTTCCAGTCCAAGCCCG+TGG + chr1_1:15260919-15260938 Msa0010210:CDS 60.0%
TGGTTCCAGTCCAAGCCCGT+GGG + chr1_1:15260920-15260939 Msa0010210:CDS 60.0%
CCACATATGCGCGCAAGCAC+TGG - chr1_1:15262200-15262219 None:intergenic 60.0%
CCAGTGCTTGCGCGCATATG+TGG + chr1_1:15262197-15262216 Msa0010210:CDS 60.0%
TGGCTAGCATTGCTCCCGTG+GGG - chr1_1:15262295-15262314 None:intergenic 60.0%
ATTCGAGCACTTCGCGGCTG+TGG + chr1_1:15262385-15262404 Msa0010210:CDS 60.0%
!! GGAACTTTGGGTAGTGGGGG+TGG + chr1_1:15262729-15262748 Msa0010210:three_prime_UTR 60.0%
! CGACGGTGGTGTGGTGGTGA+CGG - chr1_1:15260589-15260608 None:intergenic 65.0%
! GGGTGAGGGAAAAAGGGCGC+AGG + chr1_1:15262502-15262521 Msa0010210:CDS 65.0%
!! CGGTGGTGTGGTGGTGACGG+TGG - chr1_1:15260586-15260605 None:intergenic 70.0%
AACGGCCCACGGGCTTGGAC+TGG - chr1_1:15260928-15260947 None:intergenic 70.0%
GTCCAAGCCCGTGGGCCGTT+TGG + chr1_1:15260928-15260947 Msa0010210:CDS 70.0%
GTCCAAACGGCCCACGGGCT+TGG - chr1_1:15260933-15260952 None:intergenic 70.0%
GCCCGTGGGCCGTTTGGACA+CGG + chr1_1:15260934-15260953 Msa0010210:CDS 70.0%
CCCGTGTCCAAACGGCCCAC+GGG - chr1_1:15260938-15260957 None:intergenic 70.0%
CCCGTGGGCCGTTTGGACAC+GGG + chr1_1:15260935-15260954 Msa0010210:CDS 70.0%
GCCCGTGTCCAAACGGCCCA+CGG - chr1_1:15260939-15260958 None:intergenic 70.0%
GGGCCGTTTGGACACGGGCT+TGG + chr1_1:15260940-15260959 Msa0010210:CDS 70.0%
GCGGCTGTGGCACAGCGCAC+CGG + chr1_1:15262398-15262417 Msa0010210:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 15260431 15262971 15260431 ID=Msa0010210;Name=Msa0010210
chr1_1 mRNA 15260431 15262971 15260431 ID=Msa0010210-mRNA-1;Parent=Msa0010210;Name=Msa0010210-mRNA-1;_AED=0.03;_eAED=0.03;_QI=46|1|1|1|1|1|2|322|388
chr1_1 exon 15260431 15261076 15260431 ID=Msa0010210-mRNA-1:exon:5598;Parent=Msa0010210-mRNA-1
chr1_1 exon 15262083 15262971 15262083 ID=Msa0010210-mRNA-1:exon:5599;Parent=Msa0010210-mRNA-1
chr1_1 five_prime_UTR 15260431 15260476 15260431 ID=Msa0010210-mRNA-1:five_prime_utr;Parent=Msa0010210-mRNA-1
chr1_1 CDS 15260477 15261076 15260477 ID=Msa0010210-mRNA-1:cds;Parent=Msa0010210-mRNA-1
chr1_1 CDS 15262083 15262649 15262083 ID=Msa0010210-mRNA-1:cds;Parent=Msa0010210-mRNA-1
chr1_1 three_prime_UTR 15262650 15262971 15262650 ID=Msa0010210-mRNA-1:three_prime_utr;Parent=Msa0010210-mRNA-1
Gene Sequence

>Msa0010210

ATGCATATTCAAACTTGTCACTCAATTAAGACACTTCCATTAACATGGAACATTCCAAAATCCATCAACCACCGACCACATCGCCACCTATTACCACCACCAAAATCCACCGTCACCACCACACCACCGTCGCTAAAAACGTCCAAAACCCACTCAATGCCACCAGAAAAGCTAGAAATTTTCAAATCACTAGAAAACTGGGCTTCTGAGTCTGTTTTACCACTACTAAAGCCAGTGGAACAATGCTGGCAGCCACAGAATTTTCTCCCTGATCCTTCATTGCCATTTGATGAATTTACTGATCAGGTGAAGGTCCTTCGTGATCGCACGAAGGACCTTCCTGATGAGTATTTTGTTGTGTTGGTTGGTGATATGGTGACGGAAGACGCGCTTCCGACGTATCAGAGTATGATTAATGGTCTTGATGGTGTTGGTGATGAGATTGGTTCCAGTCCAAGCCCGTGGGCCGTTTGGACACGGGCTTGGACTGCTGAAGAAAATAGACATGGGGATTTGCTTAGGACTTATTTGTATCTTTCTGGAAGGGTTGATATGGAGATGATTGAGAAAACTGTTCAGTATCTCATTGGAGCTGGCATGGACCCCGGGACAGAAAACAACCCATACTTGGGATTTGTATACACATCATTCCAAGAGCGAGCAACATTTGTATCACACGGAAACACGGCTCGCTTAGCGAAAGATGGCGGCGATCCAGTGCTTGCGCGCATATGTGGTACCATCGCAGCCGATGAAAAGCGTCATGAGAACGCATACTCAAAAATCGTCGAGAAGCTTCTAGAAATGGACCCCACGGGAGCAATGCTAGCCATTGGTGATATGATGGAGAAAAAAATCACAATGCCGGCACACCTTATGTATGATGGACAAGACCCTAAGCTATTCGAGCACTTCGCGGCTGTGGCACAGCGCACCGGAGTTTACACGGCCAATGATTACGCGGATATCTTGGAGTTTTTAATCGAACGGTGGAGATTGGAGAAGCTTGAAGGATTAACGGGTGAGGGAAAAAGGGCGCAGGATTTTGTGTGTGGGTTAGCACCTAGGATTAGAAGGTTGCAAGAGAGAGCTGATGCACGTGCTCGTAAGATGAAACCACATGGGGTCAAGTTTAGTTGGATTTTTAATAATGAGGTTGTTTTGTGA
Protein sequence

>Msa0010210

MHIQTCHSIKTLPLTWNIPKSINHRPHRHLLPPPKSTVTTTPPSLKTSKTHSMPPEKLEIFKSLENWASESVLPLLKPVEQCWQPQNFLPDPSLPFDEFTDQVKVLRDRTKDLPDEYFVVLVGDMVTEDALPTYQSMINGLDGVGDEIGSSPSPWAVWTRAWTAEENRHGDLLRTYLYLSGRVDMEMIEKTVQYLIGAGMDPGTENNPYLGFVYTSFQERATFVSHGNTARLAKDGGDPVLARICGTIAADEKRHENAYSKIVEKLLEMDPTGAMLAIGDMMEKKITMPAHLMYDGQDPKLFEHFAAVAQRTGVYTANDYADILEFLIERWRLEKLEGLTGEGKRAQDFVCGLAPRIRRLQERADARARKMKPHGVKFSWIFNNEVVL*