AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1391430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1391430 MtrunA17_Chr8g0383951 80.000 445 27 5 14 396 1 445 0.0 680
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 139 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGGTTCCCTTCAAGATTT+TGG 0.069730 tig0021435:+13241 Msa1391430:CDS
GATTGGTACAAATTCAATTA+AGG 0.200850 tig0021435:+15332 Msa1391430:three_prime_UTR
CGCCTTTCTGCGCCCGGGCT+TGG 0.209663 tig0021435:+14283 Msa1391430:CDS
TGCTGAAGTTCTGGCATCTA+AGG 0.222981 tig0021435:+14491 Msa1391430:CDS
CTTCCTGATTGCTGAAGTTC+TGG 0.223414 tig0021435:+14482 Msa1391430:CDS
AAAAGGGACTCTGGTGGTTT+GGG 0.240265 tig0021435:+13223 Msa1391430:CDS
GACACATTAGAGGAAGTAAT+TGG 0.241899 tig0021435:+13199 Msa1391430:CDS
GAAAAGGGACTCTGGTGGTT+TGG 0.264666 tig0021435:+13222 Msa1391430:CDS
TGCAATGTGTCTCTTTCTTA+TGG 0.272210 tig0021435:+15668 Msa1391430:three_prime_UTR
GGGTGAGTTGATGTAGATTT+TGG 0.281925 tig0021435:+15415 Msa1391430:three_prime_UTR
TTCTTTCACCTCAAATGGTT+GGG 0.316414 tig0021435:+14362 Msa1391430:CDS
CTCACCCGCTGCACGAGATT+TGG 0.332656 tig0021435:-15399 None:intergenic
GTCACTGTTAGTTCGGATTT+CGG 0.342424 tig0021435:-15377 None:intergenic
ATTGGTACAAATTCAATTAA+GGG 0.353441 tig0021435:+15333 Msa1391430:three_prime_UTR
TCGGCAGGGTGCAGATTTGA+TGG 0.362196 tig0021435:+14168 Msa1391430:intron
CCATGTGGCGGATATGTTGC+TGG 0.367862 tig0021435:+14229 Msa1391430:CDS
GCCGATGGAACCTTCATTGA+TGG 0.370185 tig0021435:+15035 Msa1391430:CDS
GCGGACAATATTATTAAGAT+TGG 0.371580 tig0021435:+15315 Msa1391430:three_prime_UTR
GCAGCGCGCCTTTCTGCGCC+CGG 0.376005 tig0021435:+14277 Msa1391430:CDS
ATTATTTCTTTCACCTCAAA+TGG 0.379919 tig0021435:+14357 Msa1391430:CDS
CCGAGGATGGTGGACTTGAC+TGG 0.385164 tig0021435:+13366 Msa1391430:CDS
CCAATTGCGGGTACCACTCC+TGG 0.392343 tig0021435:+14859 Msa1391430:CDS
ACTTCCTCTAATGTGTCATA+TGG 0.402174 tig0021435:-13193 None:intergenic
ATTGCTTCCCCAACCATTTG+AGG 0.410807 tig0021435:-14370 None:intergenic
ACCACAATCCACACCAAGCC+CGG 0.425545 tig0021435:-14296 None:intergenic
TAGAGGAAGTAATTGGGAAA+AGG 0.426036 tig0021435:+13206 Msa1391430:CDS
AAATGCAGGGTGGCACTCAT+TGG 0.430241 tig0021435:+15199 Msa1391430:intron
TGGCACTCATTGGACTCAAT+GGG 0.438629 tig0021435:+15209 Msa1391430:CDS
AGAGGTCATGTGGTTATTCA+TGG 0.439010 tig0021435:+13438 Msa1391430:CDS
AGTGGTACCCGCAATTGGTT+TGG 0.441177 tig0021435:-14854 None:intergenic
GTGGCACTCATTGGACTCAA+TGG 0.444697 tig0021435:+15208 Msa1391430:CDS
AACCTGAACTGTATCACATC+GGG 0.445399 tig0021435:-14544 None:intergenic
ATGCCAGAACTTCAGCAATC+AGG 0.447778 tig0021435:-14485 None:intergenic
AGATTTGGTCACTGTTAGTT+CGG 0.448723 tig0021435:-15384 None:intergenic
GGTGAAATACCGAGAAGTTC+CGG 0.451794 tig0021435:+13264 Msa1391430:CDS
CCAGGAGTGGTACCCGCAAT+TGG 0.455539 tig0021435:-14859 None:intergenic
CAGCGCGCCTTTCTGCGCCC+GGG 0.457346 tig0021435:+14278 Msa1391430:CDS
AGAGGAAGTAATTGGGAAAA+GGG 0.458354 tig0021435:+13207 Msa1391430:CDS
GCCTGGCAAAATACAGCAAA+TGG 0.460230 tig0021435:-15098 None:intergenic
TTTCTTTCACCTCAAATGGT+TGG 0.466714 tig0021435:+14361 Msa1391430:CDS
TCATACACCAAACCAATTGC+GGG 0.468084 tig0021435:+14847 Msa1391430:CDS
TTCTGCGCCCGGGCTTGGTG+TGG 0.471332 tig0021435:+14288 Msa1391430:CDS
CAGACCTCTGATGCATATCC+AGG 0.477506 tig0021435:-14877 None:intergenic
TCTGGAACGAAGGGATTGAT+AGG 0.478948 tig0021435:-11454 None:intergenic
TGCCTGTAGGCTGTACAACT+TGG 0.486368 tig0021435:+14766 Msa1391430:intron
CACCAAGCCCGGGCGCAGAA+AGG 0.488183 tig0021435:-14285 None:intergenic
AGTTTGAGTGTTAATGACAT+AGG 0.488359 tig0021435:+13467 Msa1391430:CDS
TGCTCCATATGACACATTAG+AGG 0.492829 tig0021435:+13189 Msa1391430:CDS
GATGCAAAATCCTGAGTGTT+CGG 0.498240 tig0021435:+14019 Msa1391430:intron
ATTTCACCCCAAAATCTTGA+AGG 0.501972 tig0021435:-13249 None:intergenic
CAGGGTGCAGATTTGATGGC+GGG 0.503740 tig0021435:+14172 Msa1391430:intron
ATGTGTTAATTTAGAATCCA+TGG 0.507142 tig0021435:+15587 Msa1391430:three_prime_UTR
TTTCATCAGCTTGCCGAGGA+TGG 0.507265 tig0021435:+13353 Msa1391430:intron
AAAAGAACAAAAGCAAGATA+AGG 0.507721 tig0021435:+11318 Msa1391430:CDS
AATGGTTGGGGAAGCAATCA+AGG 0.508889 tig0021435:+14375 Msa1391430:CDS
TGTTCAGAGAAGCTCTCCTG+TGG 0.510171 tig0021435:+14822 Msa1391430:CDS
AATGGTAGATGTTGTTGTAA+TGG 0.513262 tig0021435:-11407 None:intergenic
CATCAGCTTGCCGAGGATGG+TGG 0.516636 tig0021435:+13356 Msa1391430:intron
GTCATGGTGGATAATTGCTA+TGG 0.519956 tig0021435:+14041 Msa1391430:CDS
TAGATTTCAGAACTTCTCCT+AGG 0.521668 tig0021435:-15239 None:intergenic
GTTTGAGTGTTAATGACATA+GGG 0.522137 tig0021435:+13468 Msa1391430:CDS
GTTCAGAGAAGCTCTCCTGT+GGG 0.522769 tig0021435:+14823 Msa1391430:CDS
AGCGAGTACCTCTGGAACGA+AGG 0.525027 tig0021435:-11464 None:intergenic
TTCTGAATGCAATGCATCAA+CGG 0.525308 tig0021435:-11569 None:intergenic
GTTAACTTGTGCTGAAAGAA+TGG 0.526680 tig0021435:+15690 Msa1391430:three_prime_UTR
ACACATTAGAGGAAGTAATT+GGG 0.527457 tig0021435:+13200 Msa1391430:CDS
CCAGTCAAGTCCACCATCCT+CGG 0.529194 tig0021435:-13366 None:intergenic
TCTCAGGTTATCTTTGCCGA+TGG 0.530646 tig0021435:+15020 Msa1391430:intron
TCTTTCACCTCAAATGGTTG+GGG 0.531494 tig0021435:+14363 Msa1391430:CDS
AAAGGCTCTCATGATATCAC+CGG 0.531537 tig0021435:-14326 None:intergenic
CCCGGGCTTGGTGTGGATTG+TGG 0.531980 tig0021435:+14295 Msa1391430:CDS
ACTCAATGGGGACTAGTCCT+AGG 0.534013 tig0021435:+15222 Msa1391430:CDS
GTGACCAAATCTCGTGCAGC+GGG 0.534283 tig0021435:+15395 Msa1391430:three_prime_UTR
GTGGATTGTGGTTCAACTCC+CGG 0.534401 tig0021435:+14307 Msa1391430:CDS
TCATGGTGGATAATTGCTAT+GGG 0.535135 tig0021435:+14042 Msa1391430:CDS
AAGTTCTGAAATCTATATGA+TGG 0.540257 tig0021435:+15247 Msa1391430:CDS
CAAAATGTGCACTCATACAG+AGG 0.542723 tig0021435:+13420 Msa1391430:CDS
AGTAGCATACCGGAACTTCT+CGG 0.544340 tig0021435:-13273 None:intergenic
GAGATTCGAACGGGATGCGT+AGG 0.544625 tig0021435:-11385 None:intergenic
GTCATACACCAAACCAATTG+CGG 0.548656 tig0021435:+14846 Msa1391430:CDS
CCACAATCCACACCAAGCCC+GGG 0.549428 tig0021435:-14295 None:intergenic
GCTGAAGTTCTGGCATCTAA+GGG 0.550000 tig0021435:+14492 Msa1391430:CDS
ACTAGTACTTCCATCAATGA+AGG 0.556777 tig0021435:-15045 None:intergenic
ACTAGTGAGCTTTCATGTGA+TGG 0.559350 tig0021435:+15062 Msa1391430:CDS
TTAATAATATTGTCCGCTGA+AGG 0.559995 tig0021435:-15309 None:intergenic
AGAACAAAAGCAAGATAAGG+AGG 0.560797 tig0021435:+11321 Msa1391430:CDS
GTAATTGGGAAAAGGGACTC+TGG 0.564622 tig0021435:+13214 Msa1391430:CDS
GGCAGTTTGATAAAGAATCC+TGG 0.564656 tig0021435:+14193 Msa1391430:CDS
ACAGCAAATGGCTCTCTAAG+AGG 0.576106 tig0021435:-15086 None:intergenic
ATATTATCGCATACCACCAT+GGG 0.576389 tig0021435:-14089 None:intergenic
GTTGTAATGGAGATTCGAAC+GGG 0.577259 tig0021435:-11394 None:intergenic
CATATTATCGCATACCACCA+TGG 0.578930 tig0021435:-14090 None:intergenic
TTTCACCCCAAAATCTTGAA+GGG 0.581207 tig0021435:-13248 None:intergenic
GTATACACCACATACTATCA+AGG 0.584193 tig0021435:-15625 None:intergenic
GCATTCAGAATTCAGAGCAG+TGG 0.587918 tig0021435:+11582 Msa1391430:CDS
CATGGAGCAATCGTTCCACC+AGG 0.592431 tig0021435:-14211 None:intergenic
ACATATTATACGACCTTCAG+CGG 0.593384 tig0021435:+15296 Msa1391430:three_prime_UTR
TGTTGTAATGGAGATTCGAA+CGG 0.593925 tig0021435:-11395 None:intergenic
GAACAAAAGCAAGATAAGGA+GGG 0.594310 tig0021435:+11322 Msa1391430:CDS
CACTCCTGGATATGCATCAG+AGG 0.597649 tig0021435:+14873 Msa1391430:CDS
CCAGCAACATATCCGCCACA+TGG 0.599034 tig0021435:-14229 None:intergenic
GTGAAAAGCTTTAAGAACAC+GGG 0.600306 tig0021435:-11629 None:intergenic
CATCACTATACTTACAAACA+AGG 0.600332 tig0021435:-15647 None:intergenic
TCCATCAATGAAGGTTCCAT+CGG 0.600675 tig0021435:-15036 None:intergenic
TATCAATCCCTTCGTTCCAG+AGG 0.600711 tig0021435:+11456 Msa1391430:CDS
GCAGGGTGCAGATTTGATGG+CGG 0.604272 tig0021435:+14171 Msa1391430:intron
AAATCCTGAGTGTTCGGTCA+TGG 0.605022 tig0021435:+14025 Msa1391430:CDS
CATGTGGCGGATATGTTGCT+GGG 0.607387 tig0021435:+14230 Msa1391430:CDS
GAAGCGAGAGGCATAGCGAA+TGG 0.611375 tig0021435:-11425 None:intergenic
TAATTGCTATGGGGAACTTG+TGG 0.611820 tig0021435:+14052 Msa1391430:CDS
GGTACAAATTCAATTAAGGG+TGG 0.613885 tig0021435:+15336 Msa1391430:three_prime_UTR
TCCTGAGTGTTCGGTCATGG+TGG 0.614793 tig0021435:+14028 Msa1391430:CDS
ATGCGTAGGATAAGCAGAGA+AGG 0.621133 tig0021435:-11371 None:intergenic
TGCTATGGGGAACTTGTGGA+AGG 0.622880 tig0021435:+14056 Msa1391430:CDS
GGTCAAAACAGTTCTTACCA+TGG 0.627762 tig0021435:-15604 None:intergenic
TTCAGAGAAGCTCTCCTGTG+GGG 0.632335 tig0021435:+14824 Msa1391430:CDS
TGTGAAAAGCTTTAAGAACA+CGG 0.632469 tig0021435:-11630 None:intergenic
GGTTTGGTGTATGACCCCAC+AGG 0.633665 tig0021435:-14838 None:intergenic
AAACCTGAACTGTATCACAT+CGG 0.634425 tig0021435:-14545 None:intergenic
CTCTGATGCATATCCAGGAG+TGG 0.634582 tig0021435:-14872 None:intergenic
GGAAGGCATTGAACCTCCCA+TGG 0.640149 tig0021435:+14073 Msa1391430:CDS
AAGGCTCTCATGATATCACC+GGG 0.640580 tig0021435:-14325 None:intergenic
GCGAGTACCTCTGGAACGAA+GGG 0.641161 tig0021435:-11463 None:intergenic
TCCACCATGACCGAACACTC+AGG 0.644287 tig0021435:-14029 None:intergenic
CAGAACTTCAGCAATCAGGA+AGG 0.652209 tig0021435:-14481 None:intergenic
GCACTCATACAGAGGTCATG+TGG 0.658940 tig0021435:+13428 Msa1391430:CDS
AGTGACCAAATCTCGTGCAG+CGG 0.661355 tig0021435:+15394 Msa1391430:three_prime_UTR
TTATCGCATACCACCATGGG+AGG 0.664402 tig0021435:-14086 None:intergenic
GGAACGATTGCTCCATGTGG+CGG 0.666888 tig0021435:+14217 Msa1391430:CDS
GGCACTCATTGGACTCAATG+GGG 0.670357 tig0021435:+15210 Msa1391430:CDS
ATTGGGAAAAGGGACTCTGG+TGG 0.681378 tig0021435:+13217 Msa1391430:CDS
AAAAGCTTTAAGAACACGGG+TGG 0.682092 tig0021435:-11626 None:intergenic
GATAGGAACAGAGAAGCGAG+AGG 0.690097 tig0021435:-11437 None:intergenic
GGTGGAACGATTGCTCCATG+TGG 0.694007 tig0021435:+14214 Msa1391430:CDS
CCTGAACTGTATCACATCGG+GGG 0.701546 tig0021435:-14542 None:intergenic
ACCTGAACTGTATCACATCG+GGG 0.703191 tig0021435:-14543 None:intergenic
CATGGTGGATAATTGCTATG+GGG 0.706640 tig0021435:+14043 Msa1391430:CDS
AGGCATTGAACCTCCCATGG+TGG 0.710958 tig0021435:+14076 Msa1391430:CDS
AGTTTGATAAAGAATCCTGG+TGG 0.766897 tig0021435:+14196 Msa1391430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTATTCATTTACAAAA+CGG - tig0021435:11706-11725 None:intergenic 10.0%
!!! TGTAAATGAATAATTATTTT+AGG + tig0021435:11709-11728 Msa1391430:intron 10.0%
!!! TATTTTAGGTATTTATTTTT+TGG + tig0021435:11723-11742 Msa1391430:intron 10.0%
!!! ATTTTAGGTATTTATTTTTT+GGG + tig0021435:11724-11743 Msa1391430:intron 10.0%
!! ATATTAAGTTACTTATTAAT+AGG + tig0021435:12526-12545 Msa1391430:intron 10.0%
!! TATTAAGTTACTTATTAATA+GGG + tig0021435:12527-12546 Msa1391430:intron 10.0%
!!! TTTAAAGTTAATATTATTCA+AGG + tig0021435:13556-13575 Msa1391430:intron 10.0%
!!! TTTTAATTTTGATTTTAAGT+TGG + tig0021435:14618-14637 Msa1391430:intron 10.0%
!! AACTTAATATAAAGAAAACA+GGG - tig0021435:12516-12535 None:intergenic 15.0%
!! TAACTTAATATAAAGAAAAC+AGG - tig0021435:12517-12536 None:intergenic 15.0%
!! ATTAAGTTACTTATTAATAG+GGG + tig0021435:12528-12547 Msa1391430:intron 15.0%
!! TAGAATATTAGAAGAAAAAA+GGG - tig0021435:13051-13070 None:intergenic 15.0%
!! ATAGAATATTAGAAGAAAAA+AGG - tig0021435:13052-13071 None:intergenic 15.0%
!!! TTCTGTTCTTTAATATTTTT+AGG - tig0021435:13850-13869 None:intergenic 15.0%
!! TTCTAATAAAATGATAAATC+TGG - tig0021435:14403-14422 None:intergenic 15.0%
!!! ATACATTTTTTGCTTATATT+TGG + tig0021435:14426-14445 Msa1391430:intron 15.0%
!!! AAACATAATCAATTTGTTTA+GGG - tig0021435:14923-14942 None:intergenic 15.0%
!!! AAAACATAATCAATTTGTTT+AGG - tig0021435:14924-14943 None:intergenic 15.0%
!!! TAAACAAATTGATTATGTTT+TGG + tig0021435:14923-14942 Msa1391430:intron 15.0%
!!! AAAATATTGAGTTTTGTAAA+TGG + tig0021435:15539-15558 Msa1391430:three_prime_UTR 15.0%
!! AATAAGCTAAAAATAGCTTA+TGG + tig0021435:11884-11903 Msa1391430:intron 20.0%
!! ATTAACAAAACAACCAATTA+GGG - tig0021435:12247-12266 None:intergenic 20.0%
!! ATTAACAAAACAACCAATTA+GGG - tig0021435:12247-12266 None:intergenic 20.0%
!! AATACTAACAATGTTAACAT+TGG + tig0021435:12638-12657 Msa1391430:intron 20.0%
!! TATAACTTGAAGCTATAATT+TGG - tig0021435:12814-12833 None:intergenic 20.0%
!! TAACTTATAATCAATTCTGA+AGG + tig0021435:12832-12851 Msa1391430:intron 20.0%
!!! TTTTTTATCAACAGAATTAC+TGG + tig0021435:13786-13805 Msa1391430:intron 20.0%
!!! TAATATTTTTAGGTCACAAA+AGG - tig0021435:13840-13859 None:intergenic 20.0%
!! TATTAAAGAACAGAAAATAG+TGG + tig0021435:13855-13874 Msa1391430:intron 20.0%
!! TTTGTGATCAGAAAAATTAT+AGG - tig0021435:13963-13982 None:intergenic 20.0%
!!! ATTTTCTGTATTCTTTACAA+GGG + tig0021435:14456-14475 Msa1391430:intron 20.0%
!! CAAAATTAAAAATCAGATAC+AGG - tig0021435:14609-14628 None:intergenic 20.0%
!! GTAATATTGAACATCATTTA+AGG - tig0021435:14950-14969 None:intergenic 20.0%
!! ATCAAAGAGTTATTAATATC+TGG - tig0021435:14992-15011 None:intergenic 20.0%
!! ATTGGTACAAATTCAATTAA+GGG + tig0021435:15333-15352 Msa1391430:three_prime_UTR 20.0%
! AAAAGAACAAAAGCAAGATA+AGG + tig0021435:11318-11337 Msa1391430:CDS 25.0%
! TTATCTATTAGCATAAGCAT+TGG - tig0021435:11953-11972 None:intergenic 25.0%
! AAACATTGGATATATAAGAG+AGG + tig0021435:12063-12082 Msa1391430:intron 25.0%
! AACATTGGATATATAAGAGA+GGG + tig0021435:12064-12083 Msa1391430:intron 25.0%
! CATTAACAAAACAACCAATT+AGG - tig0021435:12248-12267 None:intergenic 25.0%
! CATTAACAAAACAACCAATT+AGG - tig0021435:12248-12267 None:intergenic 25.0%
! CATTGTTAGTATTATATGCT+GGG - tig0021435:12631-12650 None:intergenic 25.0%
! ACATTGTTAGTATTATATGC+TGG - tig0021435:12632-12651 None:intergenic 25.0%
! CATTGGCGATTTAAATAAAA+AGG + tig0021435:12655-12674 Msa1391430:intron 25.0%
! TTGAATATGTAACTGGAATA+AGG + tig0021435:13125-13144 Msa1391430:intron 25.0%
! AAGAAATATTAGTAGCATAC+CGG - tig0021435:13286-13305 None:intergenic 25.0%
!! TATTATGGACTTTTAGATCA+GGG - tig0021435:13649-13668 None:intergenic 25.0%
! TATAGCTTCTACTAGTATTA+TGG - tig0021435:13664-13683 None:intergenic 25.0%
!! TAGAAGCTATATTGATTGTT+AGG + tig0021435:13673-13692 Msa1391430:intron 25.0%
!! AGAAGCTATATTGATTGTTA+GGG + tig0021435:13674-13693 Msa1391430:intron 25.0%
! AAGAAATAATCCCTGAAAAA+AGG - tig0021435:14347-14366 None:intergenic 25.0%
!! ATTATTTCTTTCACCTCAAA+TGG + tig0021435:14357-14376 Msa1391430:CDS 25.0%
!! GATTTTCTGTATTCTTTACA+AGG + tig0021435:14455-14474 Msa1391430:intron 25.0%
! AAGAGTTATTAATATCTGGT+AGG - tig0021435:14988-15007 None:intergenic 25.0%
! AGCAATAGTATACTATATAC+AGG + tig0021435:15138-15157 Msa1391430:intron 25.0%
!!! AAGTTCTGAAATCTATATGA+TGG + tig0021435:15247-15266 Msa1391430:CDS 25.0%
! GATTGGTACAAATTCAATTA+AGG + tig0021435:15332-15351 Msa1391430:three_prime_UTR 25.0%
!! TGATGTAGATTTTGGATTTT+TGG + tig0021435:15423-15442 Msa1391430:three_prime_UTR 25.0%
!! GATGTAGATTTTGGATTTTT+GGG + tig0021435:15424-15443 Msa1391430:three_prime_UTR 25.0%
!! ATGTGTTAATTTAGAATCCA+TGG + tig0021435:15587-15606 Msa1391430:three_prime_UTR 25.0%
AATGGTAGATGTTGTTGTAA+TGG - tig0021435:11410-11429 None:intergenic 30.0%
GCAACAAAATTAAGTCTGAA+TGG - tig0021435:11532-11551 None:intergenic 30.0%
! ACTTAATTTTGTTGCAATGC+AGG + tig0021435:11537-11556 Msa1391430:intron 30.0%
!! TGTGAAAAGCTTTAAGAACA+CGG - tig0021435:11633-11652 None:intergenic 30.0%
!! GCTGTTTTCATAAGCTATTT+TGG + tig0021435:11849-11868 Msa1391430:intron 30.0%
!! TGTTGTTTCTATAAGCTCTT+CGG + tig0021435:11917-11936 Msa1391430:intron 30.0%
TCAAATAAGACAATCCAAAC+AGG + tig0021435:11975-11994 Msa1391430:intron 30.0%
ACATTGGATATATAAGAGAG+GGG + tig0021435:12065-12084 Msa1391430:intron 30.0%
! ATAAAGACCAATGTGTTGTT+GGG - tig0021435:12187-12206 None:intergenic 30.0%
! TAAAGACCAATGTGTTGTTA+GGG - tig0021435:12301-12320 None:intergenic 30.0%
! ATAAAGACCAATGTGTTGTT+AGG - tig0021435:12187-12206 None:intergenic 30.0%
ACTTATTAATAGGGGATATG+AGG + tig0021435:12536-12555 Msa1391430:intron 30.0%
AATTAAGGAGTGAAGTGATA+AGG + tig0021435:12583-12602 Msa1391430:intron 30.0%
ATTAAGGAGTGAAGTGATAA+GGG + tig0021435:12584-12603 Msa1391430:intron 30.0%
! ATTATGTTTTCTCCCAAAAG+TGG + tig0021435:12917-12936 Msa1391430:intron 30.0%
ATAGTATGCAAGTGTATGTT+TGG - tig0021435:12945-12964 None:intergenic 30.0%
TTCCAGTTACATATTCAACA+GGG - tig0021435:13123-13142 None:intergenic 30.0%
ATTCCAGTTACATATTCAAC+AGG - tig0021435:13124-13143 None:intergenic 30.0%
! CTAATATAGCTATCAGCTTT+TGG + tig0021435:13156-13175 Msa1391430:intron 30.0%
ACACATTAGAGGAAGTAATT+GGG + tig0021435:13200-13219 Msa1391430:CDS 30.0%
!! TATGAGTGCACATTTTGTTT+CGG - tig0021435:13417-13436 None:intergenic 30.0%
AGTTTGAGTGTTAATGACAT+AGG + tig0021435:13467-13486 Msa1391430:CDS 30.0%
GTTTGAGTGTTAATGACATA+GGG + tig0021435:13468-13487 Msa1391430:CDS 30.0%
!!! ATTCGTATTTTAACTCACAC+AGG - tig0021435:13594-13613 None:intergenic 30.0%
! GTATTATGGACTTTTAGATC+AGG - tig0021435:13650-13669 None:intergenic 30.0%
!!! CTTTTAAAGTATGAGCGTTA+GGG + tig0021435:13892-13911 Msa1391430:intron 30.0%
! TTTTGCATCTGAACATTGAA+GGG - tig0021435:14008-14027 None:intergenic 30.0%
! ATTTTGCATCTGAACATTGA+AGG - tig0021435:14009-14028 None:intergenic 30.0%
GAATAAAGCAATACATACTG+CGG - tig0021435:14116-14135 None:intergenic 30.0%
! GTATGTATTGCTTTATTCCA+AGG + tig0021435:14118-14137 Msa1391430:intron 30.0%
TATCACATTTCTACATTCGT+CGG + tig0021435:14149-14168 Msa1391430:intron 30.0%
ATTAATATCTGGTAGGACTT+TGG - tig0021435:14981-15000 None:intergenic 30.0%
!! TTCATTTGTTTTCCAAATGC+AGG + tig0021435:15185-15204 Msa1391430:intron 30.0%
!! TCATTTGTTTTCCAAATGCA+GGG + tig0021435:15186-15205 Msa1391430:intron 30.0%
TTAATAATATTGTCCGCTGA+AGG - tig0021435:15312-15331 None:intergenic 30.0%
GCGGACAATATTATTAAGAT+TGG + tig0021435:15315-15334 Msa1391430:three_prime_UTR 30.0%
!! TTGAGTTTTGTAAATGGCTT+AGG + tig0021435:15545-15564 Msa1391430:three_prime_UTR 30.0%
CATCACTATACTTACAAACA+AGG - tig0021435:15650-15669 None:intergenic 30.0%
AGAACAAAAGCAAGATAAGG+AGG + tig0021435:11321-11340 Msa1391430:CDS 35.0%
GAACAAAAGCAAGATAAGGA+GGG + tig0021435:11322-11341 Msa1391430:CDS 35.0%
! TGTTGTAATGGAGATTCGAA+CGG - tig0021435:11398-11417 None:intergenic 35.0%
TTCTGAATGCAATGCATCAA+CGG - tig0021435:11572-11591 None:intergenic 35.0%
!! GTGAAAAGCTTTAAGAACAC+GGG - tig0021435:11632-11651 None:intergenic 35.0%
! CCTTAAGGCATTAGGTATAT+GGG - tig0021435:12092-12111 None:intergenic 35.0%
! ACCTTAAGGCATTAGGTATA+TGG - tig0021435:12093-12112 None:intergenic 35.0%
! ACTCAAAACCTTAAGGCATT+AGG - tig0021435:12100-12119 None:intergenic 35.0%
!!! TAATGCCTTAAGGTTTTGAG+TGG + tig0021435:12099-12118 Msa1391430:intron 35.0%
! TAAAGACCAATGTGTTGTTG+GGG - tig0021435:12186-12205 None:intergenic 35.0%
CATAAAGACCAATGTGTTGT+TGG - tig0021435:12188-12207 None:intergenic 35.0%
CAATCTAAACATGCCCTAAT+TGG + tig0021435:12231-12250 Msa1391430:intron 35.0%
CAATCTAAACATGCCCTAAT+TGG + tig0021435:12231-12250 Msa1391430:intron 35.0%
! CAACAATTTCTGAAAAAGCC+TGG - tig0021435:12452-12471 None:intergenic 35.0%
!!! CAGGCTTTTTCAGAAATTGT+TGG + tig0021435:12450-12469 Msa1391430:intron 35.0%
ATTAATAGGGGATATGAGGT+TGG + tig0021435:12540-12559 Msa1391430:intron 35.0%
TTAAGGAGTGAAGTGATAAG+GGG + tig0021435:12585-12604 Msa1391430:intron 35.0%
!! GTATGTTTGGTTCCACTTTT+GGG - tig0021435:12932-12951 None:intergenic 35.0%
!! TGTATGTTTGGTTCCACTTT+TGG - tig0021435:12933-12952 None:intergenic 35.0%
TTCCCTGTTGAATATGTAAC+TGG + tig0021435:13118-13137 Msa1391430:intron 35.0%
ACTTCCTCTAATGTGTCATA+TGG - tig0021435:13196-13215 None:intergenic 35.0%
GACACATTAGAGGAAGTAAT+TGG + tig0021435:13199-13218 Msa1391430:CDS 35.0%
TAGAGGAAGTAATTGGGAAA+AGG + tig0021435:13206-13225 Msa1391430:CDS 35.0%
AGAGGAAGTAATTGGGAAAA+GGG + tig0021435:13207-13226 Msa1391430:CDS 35.0%
TTTCACCCCAAAATCTTGAA+GGG - tig0021435:13251-13270 None:intergenic 35.0%
ATTTCACCCCAAAATCTTGA+AGG - tig0021435:13252-13271 None:intergenic 35.0%
!! ATGAGTGCACATTTTGTTTC+GGG - tig0021435:13416-13435 None:intergenic 35.0%
GTAAGATTCTTAGTTGTGCT+TGG + tig0021435:13512-13531 Msa1391430:intron 35.0%
!!! GCTTTTAAAGTATGAGCGTT+AGG + tig0021435:13891-13910 Msa1391430:intron 35.0%
TTGAAGGGTAAAAAGGTTAC+AGG - tig0021435:13993-14012 None:intergenic 35.0%
CTGAACATTGAAGGGTAAAA+AGG - tig0021435:14000-14019 None:intergenic 35.0%
!! TCATGGTGGATAATTGCTAT+GGG + tig0021435:14042-14061 Msa1391430:CDS 35.0%
ATATTATCGCATACCACCAT+GGG - tig0021435:14092-14111 None:intergenic 35.0%
AGTTTGATAAAGAATCCTGG+TGG + tig0021435:14196-14215 Msa1391430:CDS 35.0%
TGTTGCTGGGAAAAAGAAAT+TGG + tig0021435:14243-14262 Msa1391430:CDS 35.0%
!!! TATCATGAGAGCCTTTTTTC+AGG + tig0021435:14333-14352 Msa1391430:CDS 35.0%
!!! ATCATGAGAGCCTTTTTTCA+GGG + tig0021435:14334-14353 Msa1391430:CDS 35.0%
TTTCTTTCACCTCAAATGGT+TGG + tig0021435:14361-14380 Msa1391430:CDS 35.0%
TTCTTTCACCTCAAATGGTT+GGG + tig0021435:14362-14381 Msa1391430:CDS 35.0%
AAACCTGAACTGTATCACAT+CGG - tig0021435:14548-14567 None:intergenic 35.0%
TCTAGAAAGAATGATAGCAC+AGG - tig0021435:14581-14600 None:intergenic 35.0%
ATACTGAAAGAAACTCCTAC+GGG - tig0021435:14699-14718 None:intergenic 35.0%
CATACTGAAAGAAACTCCTA+CGG - tig0021435:14700-14719 None:intergenic 35.0%
AATTGATCTTCAATGCCTGT+AGG + tig0021435:14753-14772 Msa1391430:intron 35.0%
! AATTTGTTTAGGGACTGTGA+AGG - tig0021435:14913-14932 None:intergenic 35.0%
TCTTTGATATCACTCTTCTC+AGG + tig0021435:15004-15023 Msa1391430:intron 35.0%
ACTAGTACTTCCATCAATGA+AGG - tig0021435:15048-15067 None:intergenic 35.0%
TAGATTTCAGAACTTCTCCT+AGG - tig0021435:15242-15261 None:intergenic 35.0%
ACATATTATACGACCTTCAG+CGG + tig0021435:15296-15315 Msa1391430:three_prime_UTR 35.0%
GGTACAAATTCAATTAAGGG+TGG + tig0021435:15336-15355 Msa1391430:three_prime_UTR 35.0%
! AGATTTGGTCACTGTTAGTT+CGG - tig0021435:15387-15406 None:intergenic 35.0%
!! GTTTTGACCTTGATAGTATG+TGG + tig0021435:15618-15637 Msa1391430:three_prime_UTR 35.0%
GTATACACCACATACTATCA+AGG - tig0021435:15628-15647 None:intergenic 35.0%
TGCAATGTGTCTCTTTCTTA+TGG + tig0021435:15668-15687 Msa1391430:three_prime_UTR 35.0%
!! GTTAACTTGTGCTGAAAGAA+TGG + tig0021435:15690-15709 Msa1391430:three_prime_UTR 35.0%
! GTTGTAATGGAGATTCGAAC+GGG - tig0021435:11397-11416 None:intergenic 40.0%
!! AAAAGCTTTAAGAACACGGG+TGG - tig0021435:11629-11648 None:intergenic 40.0%
GTGAGTGATTATATCCCACA+TGG + tig0021435:12026-12045 Msa1391430:intron 40.0%
GATTATATCCCACATGGACT+CGG + tig0021435:12032-12051 Msa1391430:intron 40.0%
CCCATATACCTAATGCCTTA+AGG + tig0021435:12089-12108 Msa1391430:intron 40.0%
CATCTCCACTCAAAACCTTA+AGG - tig0021435:12107-12126 None:intergenic 40.0%
!!! TAAGGTTTTGAGTGGAGATG+TGG + tig0021435:12107-12126 Msa1391430:intron 40.0%
GATGTGGTGTCTAAGTTTCT+TGG + tig0021435:12123-12142 Msa1391430:intron 40.0%
TGTTAATGCTGTCAGCACTT+TGG + tig0021435:12375-12394 Msa1391430:intron 40.0%
GTTATGGTCATGATGAAGCT+GGG + tig0021435:12409-12428 Msa1391430:intron 40.0%
TTATGGTCATGATGAAGCTG+GGG + tig0021435:12410-12429 Msa1391430:intron 40.0%
ATCAGCTATTGTTCGTTCAC+AGG + tig0021435:12479-12498 Msa1391430:intron 40.0%
AGTATTATATGCTGGGAGTG+TGG - tig0021435:12624-12643 None:intergenic 40.0%
ACTTGTCAACAGTTCTTCTC+AGG + tig0021435:12969-12988 Msa1391430:intron 40.0%
GGCAAATAAAGCACATGTGA+TGG - tig0021435:13003-13022 None:intergenic 40.0%
CAACTATAGAGCTATACTGC+TGG - tig0021435:13090-13109 None:intergenic 40.0%
TGCTCCATATGACACATTAG+AGG + tig0021435:13189-13208 Msa1391430:CDS 40.0%
! TTGGGTTCCCTTCAAGATTT+TGG + tig0021435:13241-13260 Msa1391430:CDS 40.0%
! TGGGTTCCCTTCAAGATTTT+GGG + tig0021435:13242-13261 Msa1391430:CDS 40.0%
!!! ATTTTTTCATCAGCTTGCCG+AGG + tig0021435:13349-13368 Msa1391430:intron 40.0%
CAAAATGTGCACTCATACAG+AGG + tig0021435:13420-13439 Msa1391430:CDS 40.0%
AGAGGTCATGTGGTTATTCA+TGG + tig0021435:13438-13457 Msa1391430:CDS 40.0%
TTAACTCACACAGGTCACAA+TGG - tig0021435:13585-13604 None:intergenic 40.0%
!!! TACAGCAGTCTTGTTTTGCA+TGG + tig0021435:13759-13778 Msa1391430:intron 40.0%
AGGTCACAAAAGGAATCAGT+TGG - tig0021435:13830-13849 None:intergenic 40.0%
GATGCAAAATCCTGAGTGTT+CGG + tig0021435:14019-14038 Msa1391430:intron 40.0%
!! GTCATGGTGGATAATTGCTA+TGG + tig0021435:14041-14060 Msa1391430:CDS 40.0%
!! CATGGTGGATAATTGCTATG+GGG + tig0021435:14043-14062 Msa1391430:CDS 40.0%
TAATTGCTATGGGGAACTTG+TGG + tig0021435:14052-14071 Msa1391430:CDS 40.0%
CATATTATCGCATACCACCA+TGG - tig0021435:14093-14112 None:intergenic 40.0%
AATGTGATACTGCACATCCT+TGG - tig0021435:14138-14157 None:intergenic 40.0%
GGCAGTTTGATAAAGAATCC+TGG + tig0021435:14193-14212 Msa1391430:CDS 40.0%
AAAGGCTCTCATGATATCAC+CGG - tig0021435:14329-14348 None:intergenic 40.0%
TCTTTCACCTCAAATGGTTG+GGG + tig0021435:14363-14382 Msa1391430:CDS 40.0%
AACCTGAACTGTATCACATC+GGG - tig0021435:14547-14566 None:intergenic 40.0%
!! TGGCAGCGAAATTTTGTTTC+TGG + tig0021435:14638-14657 Msa1391430:intron 40.0%
!! TGTTTCTGGTAGAAAAGCTG+TGG + tig0021435:14652-14671 Msa1391430:intron 40.0%
! TAGAAAAGCTGTGGTTGATG+TGG + tig0021435:14661-14680 Msa1391430:intron 40.0%
! AGAAAAGCTGTGGTTGATGT+GGG + tig0021435:14662-14681 Msa1391430:intron 40.0%
GTCATACACCAAACCAATTG+CGG + tig0021435:14846-14865 Msa1391430:CDS 40.0%
TCATACACCAAACCAATTGC+GGG + tig0021435:14847-14866 Msa1391430:CDS 40.0%
TCCATCAATGAAGGTTCCAT+CGG - tig0021435:15039-15058 None:intergenic 40.0%
ACTAGTGAGCTTTCATGTGA+TGG + tig0021435:15062-15081 Msa1391430:CDS 40.0%
!! TTTGTTTTCCAAATGCAGGG+TGG + tig0021435:15189-15208 Msa1391430:intron 40.0%
GTCACTGTTAGTTCGGATTT+CGG - tig0021435:15380-15399 None:intergenic 40.0%
!!! GGGTGAGTTGATGTAGATTT+TGG + tig0021435:15415-15434 Msa1391430:three_prime_UTR 40.0%
GGTCAAAACAGTTCTTACCA+TGG - tig0021435:15607-15626 None:intergenic 40.0%
ATGCGTAGGATAAGCAGAGA+AGG - tig0021435:11374-11393 None:intergenic 45.0%
! TCTGGAACGAAGGGATTGAT+AGG - tig0021435:11457-11476 None:intergenic 45.0%
TATCAATCCCTTCGTTCCAG+AGG + tig0021435:11456-11475 Msa1391430:CDS 45.0%
GCATTCAGAATTCAGAGCAG+TGG + tig0021435:11582-11601 Msa1391430:CDS 45.0%
! GCTTTTCACAATGCTCGACT+TGG + tig0021435:11643-11662 Msa1391430:CDS 45.0%
CACAATGAGATGAGCCTGTT+TGG - tig0021435:11992-12011 None:intergenic 45.0%
ACAGGCTCATCTCATTGTGT+TGG + tig0021435:11993-12012 Msa1391430:intron 45.0%
CAGGCTCATCTCATTGTGTT+GGG + tig0021435:11994-12013 Msa1391430:intron 45.0%
ACTCGGAATGGAGGAAACAT+TGG + tig0021435:12049-12068 Msa1391430:intron 45.0%
GTGGTGTCTAAGTTTCTTGG+TGG + tig0021435:12126-12145 Msa1391430:intron 45.0%
! AATGTGTTGTTAGGGAGTCC+GGG - tig0021435:12293-12312 None:intergenic 45.0%
! CAATGTGTTGTTAGGGAGTC+CGG - tig0021435:12294-12313 None:intergenic 45.0%
TAATGCTGTCAGCACTTTGG+TGG + tig0021435:12378-12397 Msa1391430:intron 45.0%
!! TTTGGTGGTTGCACTGGTTA+TGG + tig0021435:12393-12412 Msa1391430:intron 45.0%
GGTTATGGTCATGATGAAGC+TGG + tig0021435:12408-12427 Msa1391430:intron 45.0%
TATGGTCATGATGAAGCTGG+GGG + tig0021435:12411-12430 Msa1391430:intron 45.0%
! TAGGGGATATGAGGTTGGTT+TGG + tig0021435:12545-12564 Msa1391430:intron 45.0%
!! TTGGTTTGGTGGCTGAAGTA+GGG + tig0021435:12559-12578 Msa1391430:intron 45.0%
TGGCTGAAGTAGGGGAATTA+AGG + tig0021435:12568-12587 Msa1391430:intron 45.0%
AGTGAAGTGATAAGGGGTTG+AGG + tig0021435:12591-12610 Msa1391430:intron 45.0%
GTGAAGTGATAAGGGGTTGA+GGG + tig0021435:12592-12611 Msa1391430:intron 45.0%
!! GTGCTTTATTTGCCCTCTTG+AGG + tig0021435:13009-13028 Msa1391430:intron 45.0%
AAAAGGGTTACCTCATCTCC+TGG - tig0021435:13035-13054 None:intergenic 45.0%
! TATCAGCTTTTGGCAGTTGC+TGG + tig0021435:13166-13185 Msa1391430:intron 45.0%
GTAATTGGGAAAAGGGACTC+TGG + tig0021435:13214-13233 Msa1391430:CDS 45.0%
AAAAGGGACTCTGGTGGTTT+GGG + tig0021435:13223-13242 Msa1391430:CDS 45.0%
! GGGTTCCCTTCAAGATTTTG+GGG + tig0021435:13243-13262 Msa1391430:CDS 45.0%
GGTGAAATACCGAGAAGTTC+CGG + tig0021435:13264-13283 Msa1391430:CDS 45.0%
AGTAGCATACCGGAACTTCT+CGG - tig0021435:13276-13295 None:intergenic 45.0%
CTGCTGTAGAGAGTTATCAG+TGG - tig0021435:13747-13766 None:intergenic 45.0%
AAATCCTGAGTGTTCGGTCA+TGG + tig0021435:14025-14044 Msa1391430:CDS 45.0%
ACATTTCTACATTCGTCGGC+AGG + tig0021435:14153-14172 Msa1391430:intron 45.0%
CATTTCTACATTCGTCGGCA+GGG + tig0021435:14154-14173 Msa1391430:intron 45.0%
AAGGCTCTCATGATATCACC+GGG - tig0021435:14328-14347 None:intergenic 45.0%
ATTGCTTCCCCAACCATTTG+AGG - tig0021435:14373-14392 None:intergenic 45.0%
AATGGTTGGGGAAGCAATCA+AGG + tig0021435:14375-14394 Msa1391430:CDS 45.0%
CAGAACTTCAGCAATCAGGA+AGG - tig0021435:14484-14503 None:intergenic 45.0%
CTTCCTGATTGCTGAAGTTC+TGG + tig0021435:14482-14501 Msa1391430:CDS 45.0%
ATGCCAGAACTTCAGCAATC+AGG - tig0021435:14488-14507 None:intergenic 45.0%
! TGCTGAAGTTCTGGCATCTA+AGG + tig0021435:14491-14510 Msa1391430:CDS 45.0%
! GCTGAAGTTCTGGCATCTAA+GGG + tig0021435:14492-14511 Msa1391430:CDS 45.0%
ACCTGAACTGTATCACATCG+GGG - tig0021435:14546-14565 None:intergenic 45.0%
TTCCAAGTTGTACAGCCTAC+AGG - tig0021435:14771-14790 None:intergenic 45.0%
AAAAAGCAAGGAGACGCTCA+CGG - tig0021435:14795-14814 None:intergenic 45.0%
GAACAGCCTCACAAAAAGCA+AGG - tig0021435:14807-14826 None:intergenic 45.0%
TCTCAGGTTATCTTTGCCGA+TGG + tig0021435:15020-15039 Msa1391430:intron 45.0%
ACAGCAAATGGCTCTCTAAG+AGG - tig0021435:15089-15108 None:intergenic 45.0%
!!! GCCATTTGCTGTATTTTGCC+AGG + tig0021435:15097-15116 Msa1391430:intron 45.0%
GCCTGGCAAAATACAGCAAA+TGG - tig0021435:15101-15120 None:intergenic 45.0%
! CTGTATTTTGCCAGGCATGT+TGG + tig0021435:15105-15124 Msa1391430:intron 45.0%
TGATGCAAAACCAACATGCC+TGG - tig0021435:15118-15137 None:intergenic 45.0%
TGGCACTCATTGGACTCAAT+GGG + tig0021435:15209-15228 Msa1391430:CDS 45.0%
GATAGGAACAGAGAAGCGAG+AGG - tig0021435:11440-11459 None:intergenic 50.0%
TATCCCACATGGACTCGGAA+TGG + tig0021435:12037-12056 Msa1391430:intron 50.0%
! CAATGTGTTGTTGGGGAGTC+CGG - tig0021435:12179-12198 None:intergenic 50.0%
! ATGTGTTGTTAGGGAGTCCG+GGG - tig0021435:12292-12311 None:intergenic 50.0%
CGGACTCCCTAACAACACAT+TGG + tig0021435:12292-12311 Msa1391430:intron 50.0%
!! GGGATATGAGGTTGGTTTGG+TGG + tig0021435:12548-12567 Msa1391430:intron 50.0%
!! GTTGGTTTGGTGGCTGAAGT+AGG + tig0021435:12558-12577 Msa1391430:intron 50.0%
!! TGGTTTGGTGGCTGAAGTAG+GGG + tig0021435:12560-12579 Msa1391430:intron 50.0%
TTATTTGCCCTCTTGAGGCC+AGG + tig0021435:13014-13033 Msa1391430:intron 50.0%
ATTGGGAAAAGGGACTCTGG+TGG + tig0021435:13217-13236 Msa1391430:CDS 50.0%
GAAAAGGGACTCTGGTGGTT+TGG + tig0021435:13222-13241 Msa1391430:CDS 50.0%
TTTCATCAGCTTGCCGAGGA+TGG + tig0021435:13353-13372 Msa1391430:intron 50.0%
GCACTCATACAGAGGTCATG+TGG + tig0021435:13428-13447 Msa1391430:CDS 50.0%
TGCTATGGGGAACTTGTGGA+AGG + tig0021435:14056-14075 Msa1391430:CDS 50.0%
TTATCGCATACCACCATGGG+AGG - tig0021435:14089-14108 None:intergenic 50.0%
!! CATGTGGCGGATATGTTGCT+GGG + tig0021435:14230-14249 Msa1391430:CDS 50.0%
! GTGGATTGTGGTTCAACTCC+CGG + tig0021435:14307-14326 Msa1391430:CDS 50.0%
CCTGAACTGTATCACATCGG+GGG - tig0021435:14545-14564 None:intergenic 50.0%
TGGGCAAAAACTTGTCCCGT+AGG + tig0021435:14681-14700 Msa1391430:intron 50.0%
TGCCTGTAGGCTGTACAACT+TGG + tig0021435:14766-14785 Msa1391430:intron 50.0%
!!! GCGTCTCCTTGCTTTTTGTG+AGG + tig0021435:14798-14817 Msa1391430:CDS 50.0%
TGTTCAGAGAAGCTCTCCTG+TGG + tig0021435:14822-14841 Msa1391430:CDS 50.0%
GTTCAGAGAAGCTCTCCTGT+GGG + tig0021435:14823-14842 Msa1391430:CDS 50.0%
TTCAGAGAAGCTCTCCTGTG+GGG + tig0021435:14824-14843 Msa1391430:CDS 50.0%
AGTGGTACCCGCAATTGGTT+TGG - tig0021435:14857-14876 None:intergenic 50.0%
CTCTGATGCATATCCAGGAG+TGG - tig0021435:14875-14894 None:intergenic 50.0%
CACTCCTGGATATGCATCAG+AGG + tig0021435:14873-14892 Msa1391430:CDS 50.0%
CAGACCTCTGATGCATATCC+AGG - tig0021435:14880-14899 None:intergenic 50.0%
GCCGATGGAACCTTCATTGA+TGG + tig0021435:15035-15054 Msa1391430:CDS 50.0%
AATGAGTGCCACCCTGCATT+TGG - tig0021435:15200-15219 None:intergenic 50.0%
AAATGCAGGGTGGCACTCAT+TGG + tig0021435:15199-15218 Msa1391430:intron 50.0%
GTGGCACTCATTGGACTCAA+TGG + tig0021435:15208-15227 Msa1391430:CDS 50.0%
GGCACTCATTGGACTCAATG+GGG + tig0021435:15210-15229 Msa1391430:CDS 50.0%
!! ACTCAATGGGGACTAGTCCT+AGG + tig0021435:15222-15241 Msa1391430:CDS 50.0%
AGTGACCAAATCTCGTGCAG+CGG + tig0021435:15394-15413 Msa1391430:three_prime_UTR 50.0%
GAGATTCGAACGGGATGCGT+AGG - tig0021435:11388-11407 None:intergenic 55.0%
! GAAGCGAGAGGCATAGCGAA+TGG - tig0021435:11428-11447 None:intergenic 55.0%
!! GCGAGTACCTCTGGAACGAA+GGG - tig0021435:11466-11485 None:intergenic 55.0%
!! AGCGAGTACCTCTGGAACGA+AGG - tig0021435:11467-11486 None:intergenic 55.0%
GAAGAGTGAGCGAGTACCTC+TGG - tig0021435:11475-11494 None:intergenic 55.0%
CCTCCATTCCGAGTCCATGT+GGG - tig0021435:12043-12062 None:intergenic 55.0%
TCCTCCATTCCGAGTCCATG+TGG - tig0021435:12044-12063 None:intergenic 55.0%
!! CGGCAATGGGCTAAACGTTC+AGG - tig0021435:12153-12172 None:intergenic 55.0%
GTTTAGCCCATTGCCGTCTC+CGG + tig0021435:12157-12176 Msa1391430:intron 55.0%
CGGACTCCCCAACAACACAT+TGG + tig0021435:12177-12196 Msa1391430:intron 55.0%
TTTAACCCATTGCCGCTCCC+CGG + tig0021435:12272-12291 Msa1391430:intron 55.0%
! CAGCACTTTGGTGGTTGCAC+TGG + tig0021435:12387-12406 Msa1391430:intron 55.0%
CTCATCTCCTGGCCTCAAGA+GGG - tig0021435:13024-13043 None:intergenic 55.0%
CCAGTCAAGTCCACCATCCT+CGG - tig0021435:13369-13388 None:intergenic 55.0%
TCCTGAGTGTTCGGTCATGG+TGG + tig0021435:14028-14047 Msa1391430:CDS 55.0%
TCCACCATGACCGAACACTC+AGG - tig0021435:14032-14051 None:intergenic 55.0%
!! GGAAGGCATTGAACCTCCCA+TGG + tig0021435:14073-14092 Msa1391430:CDS 55.0%
!! AGGCATTGAACCTCCCATGG+TGG + tig0021435:14076-14095 Msa1391430:CDS 55.0%
TCGGCAGGGTGCAGATTTGA+TGG + tig0021435:14168-14187 Msa1391430:intron 55.0%
GCAGGGTGCAGATTTGATGG+CGG + tig0021435:14171-14190 Msa1391430:intron 55.0%
! CAGGGTGCAGATTTGATGGC+GGG + tig0021435:14172-14191 Msa1391430:intron 55.0%
CATGGAGCAATCGTTCCACC+AGG - tig0021435:14214-14233 None:intergenic 55.0%
GGTGGAACGATTGCTCCATG+TGG + tig0021435:14214-14233 Msa1391430:CDS 55.0%
GGAACGATTGCTCCATGTGG+CGG + tig0021435:14217-14236 Msa1391430:CDS 55.0%
CCAGCAACATATCCGCCACA+TGG - tig0021435:14232-14251 None:intergenic 55.0%
!! CCATGTGGCGGATATGTTGC+TGG + tig0021435:14229-14248 Msa1391430:CDS 55.0%
ACCACAATCCACACCAAGCC+CGG - tig0021435:14299-14318 None:intergenic 55.0%
CCCCCGATGTGATACAGTTC+AGG + tig0021435:14542-14561 Msa1391430:CDS 55.0%
!! GGTTTGGTGTATGACCCCAC+AGG - tig0021435:14841-14860 None:intergenic 55.0%
GTGACCAAATCTCGTGCAGC+GGG + tig0021435:15395-15414 Msa1391430:three_prime_UTR 55.0%
CCCACATGGACTCGGAATGG+AGG + tig0021435:12040-12059 Msa1391430:intron 60.0%
GTTGTTGGGGAGTCCGGAGA+CGG - tig0021435:12173-12192 None:intergenic 60.0%
TTGTTAGGGAGTCCGGGGAG+CGG - tig0021435:12287-12306 None:intergenic 60.0%
GGGACGTGAAGCTCTTGACC+AGG + tig0021435:12431-12450 Msa1391430:intron 60.0%
CCTCATCTCCTGGCCTCAAG+AGG - tig0021435:13025-13044 None:intergenic 60.0%
CCTCTTGAGGCCAGGAGATG+AGG + tig0021435:13022-13041 Msa1391430:intron 60.0%
CATCAGCTTGCCGAGGATGG+TGG + tig0021435:13356-13375 Msa1391430:intron 60.0%
!! CCGAGGATGGTGGACTTGAC+TGG + tig0021435:13366-13385 Msa1391430:CDS 60.0%
CCACAATCCACACCAAGCCC+GGG - tig0021435:14298-14317 None:intergenic 60.0%
TATCACATCGGGGGACGCGA+GGG - tig0021435:14536-14555 None:intergenic 60.0%
CCAGGAGTGGTACCCGCAAT+TGG - tig0021435:14862-14881 None:intergenic 60.0%
CCAATTGCGGGTACCACTCC+TGG + tig0021435:14859-14878 Msa1391430:CDS 60.0%
CTCACCCGCTGCACGAGATT+TGG - tig0021435:15402-15421 None:intergenic 60.0%
GGGAGTCCGGAGACGGCAAT+GGG - tig0021435:12166-12185 None:intergenic 65.0%
!! CCCGGGCTTGGTGTGGATTG+TGG + tig0021435:14295-14314 Msa1391430:CDS 65.0%
GTATCACATCGGGGGACGCG+AGG - tig0021435:14537-14556 None:intergenic 65.0%
GGGGAGTCCGGAGACGGCAA+TGG - tig0021435:12167-12186 None:intergenic 70.0%
GGAGTCCGGGGAGCGGCAAT+GGG - tig0021435:12280-12299 None:intergenic 70.0%
CACCAAGCCCGGGCGCAGAA+AGG - tig0021435:14288-14307 None:intergenic 70.0%
!! TTCTGCGCCCGGGCTTGGTG+TGG + tig0021435:14288-14307 Msa1391430:CDS 70.0%
GGGAGTCCGGGGAGCGGCAA+TGG - tig0021435:12281-12300 None:intergenic 75.0%
GCAGCGCGCCTTTCTGCGCC+CGG + tig0021435:14277-14296 Msa1391430:CDS 75.0%
CAGCGCGCCTTTCTGCGCCC+GGG + tig0021435:14278-14297 Msa1391430:CDS 75.0%
CGCCTTTCTGCGCCCGGGCT+TGG + tig0021435:14283-14302 Msa1391430:CDS 75.0%
CATCGGGGGACGCGAGGGAG+TGG - tig0021435:14531-14550 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0021435 gene 11313 15714 11313 ID=Msa1391430;Name=Msa1391430
tig0021435 mRNA 11313 15714 11313 ID=Msa1391430-mRNA-1;Parent=Msa1391430;Name=Msa1391430-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.77|0.8|1|1|1|10|448|396
tig0021435 exon 11313 11477 11313 ID=Msa1391430-mRNA-1:exon:12708;Parent=Msa1391430-mRNA-1
tig0021435 exon 11559 11672 11559 ID=Msa1391430-mRNA-1:exon:12709;Parent=Msa1391430-mRNA-1
tig0021435 exon 13172 13285 13172 ID=Msa1391430-mRNA-1:exon:12710;Parent=Msa1391430-mRNA-1
tig0021435 exon 13362 13511 13362 ID=Msa1391430-mRNA-1:exon:12711;Parent=Msa1391430-mRNA-1
tig0021435 exon 14020 14097 14020 ID=Msa1391430-mRNA-1:exon:12712;Parent=Msa1391430-mRNA-1
tig0021435 exon 14175 14396 14175 ID=Msa1391430-mRNA-1:exon:12713;Parent=Msa1391430-mRNA-1
tig0021435 exon 14477 14563 14477 ID=Msa1391430-mRNA-1:exon:12714;Parent=Msa1391430-mRNA-1
tig0021435 exon 14775 14894 14775 ID=Msa1391430-mRNA-1:exon:12715;Parent=Msa1391430-mRNA-1
tig0021435 exon 15026 15106 15026 ID=Msa1391430-mRNA-1:exon:12716;Parent=Msa1391430-mRNA-1
tig0021435 exon 15207 15714 15207 ID=Msa1391430-mRNA-1:exon:12717;Parent=Msa1391430-mRNA-1
tig0021435 CDS 11313 11477 11313 ID=Msa1391430-mRNA-1:cds;Parent=Msa1391430-mRNA-1
tig0021435 CDS 11559 11672 11559 ID=Msa1391430-mRNA-1:cds;Parent=Msa1391430-mRNA-1
tig0021435 CDS 13172 13285 13172 ID=Msa1391430-mRNA-1:cds;Parent=Msa1391430-mRNA-1
tig0021435 CDS 13362 13511 13362 ID=Msa1391430-mRNA-1:cds;Parent=Msa1391430-mRNA-1
tig0021435 CDS 14020 14097 14020 ID=Msa1391430-mRNA-1:cds;Parent=Msa1391430-mRNA-1
tig0021435 CDS 14175 14396 14175 ID=Msa1391430-mRNA-1:cds;Parent=Msa1391430-mRNA-1
tig0021435 CDS 14477 14563 14477 ID=Msa1391430-mRNA-1:cds;Parent=Msa1391430-mRNA-1
tig0021435 CDS 14775 14894 14775 ID=Msa1391430-mRNA-1:cds;Parent=Msa1391430-mRNA-1
tig0021435 CDS 15026 15106 15026 ID=Msa1391430-mRNA-1:cds;Parent=Msa1391430-mRNA-1
tig0021435 CDS 15207 15266 15207 ID=Msa1391430-mRNA-1:cds;Parent=Msa1391430-mRNA-1
tig0021435 three_prime_UTR 15267 15714 15267 ID=Msa1391430-mRNA-1:three_prime_utr;Parent=Msa1391430-mRNA-1
Gene Sequence

>Msa1391430

AACGAAAAAGAACAAAAGCAAGATAAGGAGGGAAGAAGAATGTTGAGCATAACGTGCGCCTTCTCTGCTTATCCTACGCATCCCGTTCGAATCTCCATTACAACAACATCTACCATTCGCTATGCCTCTCGCTTCTCTGTTCCTATCAATCCCTTCGTTCCAGAGGTTATTGAAGCCGTTGATGCATTGCATTCAGAATTCAGAGCAGTGGATAATTTAGTTGCATACAATACCACCCGTGTTCTTAAAGCTTTTCACAATGCTCGACTTGGTTCTCATCTTTTGGCAGTTGCTGGTGCTCCATATGACACATTAGAGGAAGTAATTGGGAAAAGGGACTCTGGTGGTTTGGGTTCCCTTCAAGATTTTGGGGTGAAATACCGAGAAGTTCCGCTTGCCGAGGATGGTGGACTTGACTGGAATGCACTGATGCATGCTGTCAAACCCGAAACAAAATGTGCACTCATACAGAGGTCATGTGGTTATTCATGGCGTCAGAGTTTGAGTGTTAATGACATAGGGAGAGCGATACAAATTATCAAAATGCAAAATCCTGAGTGTTCGGTCATGGTGGATAATTGCTATGGGGAACTTGTGGAAGGCATTGAACCTCCCATGGTGGGTGCAGATTTGATGGCGGGCAGTTTGATAAAGAATCCTGGTGGAACGATTGCTCCATGTGGCGGATATGTTGCTGGGAAAAAGAAATTGGTTGAAGCAGCTGCAGCGCGCCTTTCTGCGCCCGGGCTTGGTGTGGATTGTGGTTCAACTCCCGGTGATATCATGAGAGCCTTTTTTCAGGGATTATTTCTTTCACCTCAAATGGTTGGGGAAGCAATCAAGGGTTCCTTCCTGATTGCTGAAGTTCTGGCATCTAAGGGTTATAAAGTGCAGCCACTCCCTCGCGTCCCCCGATGTGATACAGTTCAGGCTGTACAACTTGGAAGCCGTGAGCGTCTCCTTGCTTTTTGTGAGGCTGTTCAGAGAAGCTCTCCTGTGGGGTCATACACCAAACCAATTGCGGGTACCACTCCTGGATATGCATCAGAGGTTATCTTTGCCGATGGAACCTTCATTGATGGAAGTACTAGTGAGCTTTCATGTGATGGACCTCTTAGAGAGCCATTTGCTGGTGGCACTCATTGGACTCAATGGGGACTAGTCCTAGGAGAAGTTCTGAAATCTATATGA

Protein sequence

>Msa1391430

NEKEQKQDKEGRRMLSITCAFSAYPTHPVRISITTTSTIRYASRFSVPINPFVPEVIEAVDALHSEFRAVDNLVAYNTTRVLKAFHNARLGSHLLAVAGAPYDTLEEVIGKRDSGGLGSLQDFGVKYREVPLAEDGGLDWNALMHAVKPETKCALIQRSCGYSWRQSLSVNDIGRAIQIIKMQNPECSVMVDNCYGELVEGIEPPMVGADLMAGSLIKNPGGTIAPCGGYVAGKKKLVEAAAARLSAPGLGVDCGSTPGDIMRAFFQGLFLSPQMVGEAIKGSFLIAEVLASKGYKVQPLPRVPRCDTVQAVQLGSRERLLAFCEAVQRSSPVGSYTKPIAGTTPGYASEVIFADGTFIDGSTSELSCDGPLREPFAGGTHWTQWGLVLGEVLKSI*