AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1456390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1456390 MtrunA17_Chr6g0448851 97.740 354 7 1 1 353 1 354 0.0 702
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1456390 AT1G66520.1 68.644 354 110 1 1 353 2 355 0.0 509
Msa1456390 AT1G66520.2 66.871 326 107 1 1 325 2 327 9.34e-162 456

Find 105 sgRNAs with CRISPR-Local

Find 313 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGTCAATGCAGCTGCTTTC+TGG 0.125708 tig0037246:-14234 Msa1456390:CDS
GTCCTTCATCCAATGTTTAA+TGG 0.173035 tig0037246:+13917 None:intergenic
TCATGAAGTTTACCTTATTA+TGG 0.225256 tig0037246:+15626 None:intergenic
CATTGAACTGCACACTTTCA+TGG 0.232858 tig0037246:+15454 None:intergenic
CAGGATCTAAACTTCTGATT+AGG 0.275769 tig0037246:-16614 Msa1456390:CDS
CTTATCAGATTTAAAAGCTT+TGG 0.282909 tig0037246:-18115 Msa1456390:CDS
TTTCTAGATATTCCTCCTTC+TGG 0.297526 tig0037246:-18042 Msa1456390:intron
TTATGCATTACGGCTGCTTA+TGG 0.303086 tig0037246:-18084 Msa1456390:CDS
AGGAGGAATATCTAGAAATT+TGG 0.308117 tig0037246:+18047 None:intergenic
ATCGTTAATTGGCGAGTATA+CGG 0.308442 tig0037246:-18671 Msa1456390:five_prime_UTR
AGCATCTGTTCTCCATAATA+AGG 0.323120 tig0037246:-15638 Msa1456390:intron
AAAGTAAAGTTCTGAAGTTT+TGG 0.328892 tig0037246:-13971 Msa1456390:three_prime_UTR
TGCTTTCTGGAATGGCCTCC+GGG 0.329802 tig0037246:-14221 Msa1456390:CDS
TCCAGTTCAAAGAGCATTGC+AGG 0.331837 tig0037246:-17528 Msa1456390:intron
AAATTATCCTCTAACTGTTC+GGG 0.338826 tig0037246:-14144 Msa1456390:three_prime_UTR
CTTGAGCTTCTGTTTCATAA+AGG 0.341200 tig0037246:-16790 Msa1456390:intron
CCGATTGCCCGAACAGTTAG+AGG 0.350058 tig0037246:+14137 None:intergenic
ATGAGATAAAGTTGGATAAC+TGG 0.353163 tig0037246:-18591 Msa1456390:five_prime_UTR
TAAATTATCCTCTAACTGTT+CGG 0.356443 tig0037246:-14145 Msa1456390:three_prime_UTR
TAGGATGGTGTTAAAGAAAC+TGG 0.357569 tig0037246:-17392 Msa1456390:CDS
CTGCTTTCTGGAATGGCCTC+CGG 0.360539 tig0037246:-14222 Msa1456390:CDS
TGTAGCCTTTGAATCATCTT+GGG 0.385996 tig0037246:+16545 None:intergenic
AACAGAAGCTCAAGCAAATC+AGG 0.393602 tig0037246:+16799 None:intergenic
AGGATCTAAACTTCTGATTA+GGG 0.393965 tig0037246:-16613 Msa1456390:CDS
GGAACCTCAGTTATGCATTA+CGG 0.394084 tig0037246:-18094 Msa1456390:CDS
TCAAGTTGATGATCATATAA+AGG 0.397407 tig0037246:-17306 Msa1456390:intron
CCTCTAACTGTTCGGGCAAT+CGG 0.397648 tig0037246:-14137 Msa1456390:three_prime_UTR
GTTATGTTGTGTACAGAGTC+AGG 0.400000 tig0037246:-18503 Msa1456390:CDS
GGATGAAGGACAATAATAGA+TGG 0.415621 tig0037246:-13905 Msa1456390:three_prime_UTR
ACCTGCAATGCTCTTTGAAC+TGG 0.416492 tig0037246:+17527 None:intergenic
ATGTAGCCTTTGAATCATCT+TGG 0.427563 tig0037246:+16544 None:intergenic
GCCTCTTTCAAGAGCAAAGT+TGG 0.432159 tig0037246:+18282 None:intergenic
CATTGGTGTTTCCATGTGGA+AGG 0.435021 tig0037246:-15401 Msa1456390:CDS
GCCAACTTTGCTCTTGAAAG+AGG 0.436963 tig0037246:-18283 Msa1456390:CDS
ATTGAACTGCACACTTTCAT+GGG 0.441075 tig0037246:+15455 None:intergenic
ATTGTTTCAGTAGCAATGAT+AGG 0.444349 tig0037246:+17329 None:intergenic
CGATAGATTGGCAAAAGGCT+AGG 0.448912 tig0037246:+17560 None:intergenic
AAGAAACCCGTTGTTCTGTT+GGG 0.452053 tig0037246:-18448 Msa1456390:CDS
TCGTTAATTGGCGAGTATAC+GGG 0.452708 tig0037246:-18670 Msa1456390:five_prime_UTR
ACTGTTCGTGCACTTGATGC+TGG 0.472791 tig0037246:-17353 Msa1456390:CDS
AATGCAGCTGCTTTCTGGAA+TGG 0.473723 tig0037246:-14229 Msa1456390:CDS
AAAGATAGCCATGATTCGTC+TGG 0.475467 tig0037246:+15670 None:intergenic
TTGCCTCTGTCTCTTCTAGC+GGG 0.476167 tig0037246:+18328 None:intergenic
TGCCATTAAACATTGGATGA+AGG 0.480128 tig0037246:-13919 Msa1456390:three_prime_UTR
GATGAAGGACAATAATAGAT+GGG 0.480843 tig0037246:-13904 Msa1456390:three_prime_UTR
AAAACTTTCACTCTCTCCCT+TGG 0.487513 tig0037246:-18305 Msa1456390:CDS
GGTGCGCCCAACAGAACAAC+GGG 0.488001 tig0037246:+18442 None:intergenic
GAAGAAACCCGTTGTTCTGT+TGG 0.494064 tig0037246:-18449 Msa1456390:CDS
GGAGCAGCACCACGATAGAT+TGG 0.499295 tig0037246:+17548 None:intergenic
AGAATCTTTGCTCTAGATCC+TGG 0.502056 tig0037246:+15543 None:intergenic
GTATTGGAACTTCAGCTCCC+TGG 0.503673 tig0037246:-14265 Msa1456390:CDS
TACGAAGAAGTCTAGAACAG+AGG 0.505666 tig0037246:-18553 Msa1456390:five_prime_UTR
AGGAATATCTAGAAATTTGG+TGG 0.508162 tig0037246:+18050 None:intergenic
TGCATTTGTCAATGGTGCAT+TGG 0.510008 tig0037246:-15418 Msa1456390:CDS
AAATGGTCAGAATAAAACTT+TGG 0.510205 tig0037246:-15508 Msa1456390:CDS
GAAGATCTATGAGATAAAGT+TGG 0.513725 tig0037246:-18599 Msa1456390:five_prime_UTR
TTCAAGAGCAAAGTTGGCCA+AGG 0.523928 tig0037246:+18288 None:intergenic
GGTGAGAAAGAAGAATGATT+CGG 0.528290 tig0037246:-18528 Msa1456390:exon
GATGATATTGCATTTGTCAA+TGG 0.537633 tig0037246:-15426 Msa1456390:CDS
AGATAGGTCCAGACGAATCA+TGG 0.540771 tig0037246:-15678 Msa1456390:CDS
AGATGATTCAAAGGCTACAT+TGG 0.545534 tig0037246:-16541 Msa1456390:CDS
GATAGATTGGCAAAAGGCTA+GGG 0.546057 tig0037246:+17561 None:intergenic
CACCACGATAGATTGGCAAA+AGG 0.549477 tig0037246:+17555 None:intergenic
GGGTTTCTTCTTGTTTGTTG+TGG 0.552904 tig0037246:+18462 None:intergenic
GTGCTGTTTGCTACGTCCGT+AGG 0.554151 tig0037246:-13881 Msa1456390:three_prime_UTR
TTTGCCTCTGTCTCTTCTAG+CGG 0.558300 tig0037246:+18327 None:intergenic
TATTTGTTGCCATTAAACAT+TGG 0.559518 tig0037246:-13926 Msa1456390:three_prime_UTR
ACGAAGAAGTCTAGAACAGA+GGG 0.559737 tig0037246:-18552 Msa1456390:five_prime_UTR
GACAATAGCAGCAACTTCAA+AGG 0.572515 tig0037246:+18360 None:intergenic
TTGGTGTTTCCATGTGGAAG+GGG 0.572569 tig0037246:-15399 Msa1456390:CDS
AAAGGCTACATTGGCACCAA+AGG 0.579198 tig0037246:-16532 Msa1456390:intron
TGTTGTGGTGAAAGTAGAAG+TGG 0.580279 tig0037246:+18477 None:intergenic
GGAATATCTAGAAATTTGGT+GGG 0.580845 tig0037246:+18051 None:intergenic
GTAGCCTTTGAATCATCTTG+GGG 0.594795 tig0037246:+16546 None:intergenic
TCAGTCCTCACAAACTCCTA+CGG 0.597750 tig0037246:+13865 None:intergenic
AGAATGTGGAGAAGCAGAAG+CGG 0.597855 tig0037246:+18384 None:intergenic
TTATGTTGTGTACAGAGTCA+GGG 0.600743 tig0037246:-18502 Msa1456390:CDS
CCTCTGTCTCTTCTAGCGGG+TGG 0.601967 tig0037246:+18331 None:intergenic
GTGGCAATTCAAACTTTCAA+CGG 0.603643 tig0037246:+18627 None:intergenic
GCAACTTCAAAGGAAGAATG+TGG 0.614138 tig0037246:+18370 None:intergenic
TCAAGAGCAAAGTTGGCCAA+GGG 0.614517 tig0037246:+18289 None:intergenic
AGATAAAGTTGGATAACTGG+AGG 0.616731 tig0037246:-18588 Msa1456390:five_prime_UTR
GCTTTCTGGAATGGCCTCCG+GGG 0.620892 tig0037246:-14220 Msa1456390:CDS
ACAACCCCAAGATGATTCAA+AGG 0.621667 tig0037246:-16550 Msa1456390:CDS
ATTACATCTCCAGCACGTTG+AGG 0.625495 tig0037246:+18235 None:intergenic
ATTGGTGTTTCCATGTGGAA+GGG 0.627647 tig0037246:-15400 Msa1456390:CDS
TACGTCCGTAGGAGTTTGTG+AGG 0.631350 tig0037246:-13870 Msa1456390:three_prime_UTR
GATAAAGTTGGATAACTGGA+GGG 0.635358 tig0037246:-18587 Msa1456390:five_prime_UTR
AAGAAGTCTAGAACAGAGGG+AGG 0.637153 tig0037246:-18549 Msa1456390:five_prime_UTR
AGGTGCGCCCAACAGAACAA+CGG 0.637246 tig0037246:+18441 None:intergenic
AGTGTGGTTCCCCTTCCACA+TGG 0.637310 tig0037246:+15390 None:intergenic
ATGAATGACTAACCAGAAGG+AGG 0.654381 tig0037246:+18030 None:intergenic
AACTACACATACCTCGAGTG+TGG 0.665523 tig0037246:+15374 None:intergenic
CCACCCGCTAGAAGAGACAG+AGG 0.670796 tig0037246:-18331 Msa1456390:CDS
GCTGAAGAAAATATGAGCGG+CGG 0.677292 tig0037246:-14191 Msa1456390:exon
TCTCATAGATCTTCAACACG+TGG 0.678085 tig0037246:+18608 None:intergenic
TCTTCAGCTTCTGTCCCCGG+AGG 0.683016 tig0037246:+14206 None:intergenic
TGGAAGGGGAACCACACTCG+AGG 0.687673 tig0037246:-15385 Msa1456390:intron
ATGAAGGACAATAATAGATG+GGG 0.688313 tig0037246:-13903 Msa1456390:three_prime_UTR
GGTGCATTGGTGTTTCCATG+TGG 0.689928 tig0037246:-15405 Msa1456390:CDS
AGGACTATAGTAGACACTTG+AGG 0.690791 tig0037246:+18421 None:intergenic
GAGAAAGAAGAATGATTCGG+CGG 0.701222 tig0037246:-18525 Msa1456390:exon
GAAGCTGAAGAAAATATGAG+CGG 0.725162 tig0037246:-14194 Msa1456390:exon
GCAGCCGTAATGCATAACTG+AGG 0.749183 tig0037246:+18090 None:intergenic
AAGCGGTGAGAAGTGCATCG+AGG 0.761991 tig0037246:+18401 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCTTATTAATTTATTTGTT+TGG - tig0037246:14582-14601 Msa1456390:intron 10.0%
!! AAAATTCATTAATAAAATCA+CGG + tig0037246:15336-15355 None:intergenic 10.0%
!! AATAAAAAAAATCTTGAAAT+TGG - tig0037246:16675-16694 Msa1456390:intron 10.0%
!! ATAAAAAAAATCTTGAAATT+GGG - tig0037246:16676-16695 Msa1456390:intron 10.0%
!! ATAAAAATATGATTAATATC+CGG + tig0037246:18481-18500 None:intergenic 10.0%
!!! TATTTTATTTAACCATTCAA+TGG - tig0037246:14685-14704 Msa1456390:intron 15.0%
!! GAACTAATAATAATATCAAT+AGG + tig0037246:16066-16085 None:intergenic 15.0%
!! AGTGTTCAAAAAAAAAAAAA+AGG - tig0037246:16604-16623 Msa1456390:CDS 15.0%
!! TAAAAAAAATCTTGAAATTG+GGG - tig0037246:16677-16696 Msa1456390:intron 15.0%
!! TTAGATAATAAGATTGTATT+TGG + tig0037246:17559-17578 None:intergenic 15.0%
!! GTTAATTGCAAAAATAAATT+TGG - tig0037246:17715-17734 Msa1456390:intron 15.0%
!!! TAATGATTTTTAAAAGCAAA+TGG + tig0037246:17778-17797 None:intergenic 15.0%
!! AAACTAATGTAAAATACAAA+TGG - tig0037246:18039-18058 Msa1456390:intron 15.0%
!! ATTTATTTGTTTGGATTGTT+TGG - tig0037246:14591-14610 Msa1456390:intron 20.0%
!! AGTAGTATAAGTAAAACATA+TGG - tig0037246:14888-14907 Msa1456390:intron 20.0%
!! AAAAAAAACAATCTTCAAAC+TGG - tig0037246:15364-15383 Msa1456390:intron 20.0%
!!! TCCAGTTTTTTTTTTTTGAA+GGG + tig0037246:15400-15419 None:intergenic 20.0%
!!! TTCCAGTTTTTTTTTTTTGA+AGG + tig0037246:15401-15420 None:intergenic 20.0%
!! GATTGTCTTAATAATATCTT+AGG - tig0037246:15492-15511 Msa1456390:CDS 20.0%
!! AAAAGATAAATTAACATCCA+TGG + tig0037246:15776-15795 None:intergenic 20.0%
!! AGTAAATATGAAATAGCATT+GGG + tig0037246:16118-16137 None:intergenic 20.0%
!! AAGTAAATATGAAATAGCAT+TGG + tig0037246:16119-16138 None:intergenic 20.0%
!!! GCTATTTCATATTTACTTTT+AGG - tig0037246:16121-16140 Msa1456390:intron 20.0%
!! AACCAAAATGAAAAAGAAAA+TGG + tig0037246:17364-17383 None:intergenic 20.0%
!! TCGGTAAATCTAAAAAATTT+GGG - tig0037246:17435-17454 Msa1456390:intron 20.0%
!!! TTTTTCCTAAAAAATGTTTG+GGG + tig0037246:17646-17665 None:intergenic 20.0%
!!! CTTTTTCCTAAAAAATGTTT+GGG + tig0037246:17647-17666 None:intergenic 20.0%
!!! TCTTTTTCCTAAAAAATGTT+TGG + tig0037246:17648-17667 None:intergenic 20.0%
!!! AAGTACTAATACTATACTTT+TGG + tig0037246:17825-17844 None:intergenic 20.0%
!!! TCAAGTTTTTCATTTTTCTT+CGG - tig0037246:18439-18458 Msa1456390:CDS 20.0%
! CTTATCAGATTTAAAAGCTT+TGG - tig0037246:14411-14430 Msa1456390:intron 25.0%
!!! TTGGTTAATTGATTTGTGTT+TGG - tig0037246:14542-14561 Msa1456390:intron 25.0%
! TTACTTAATTGTCCATTGAA+TGG + tig0037246:14700-14719 None:intergenic 25.0%
! TTGCTTCTCTCTAAATAATT+AGG - tig0037246:14798-14817 Msa1456390:intron 25.0%
! GTATAAGTAAAACATATGGA+TGG - tig0037246:14892-14911 Msa1456390:intron 25.0%
!!! TTGACTTGTATTTGTATACT+AGG - tig0037246:15115-15134 Msa1456390:intron 25.0%
!!! TCAAGTTGATGATCATATAA+AGG - tig0037246:15220-15239 Msa1456390:intron 25.0%
! ACCCTTCAAAAAAAAAAAAC+TGG - tig0037246:15396-15415 Msa1456390:CDS 25.0%
!!! CTCAGAAATAAAAAAGTATC+TGG + tig0037246:15537-15556 None:intergenic 25.0%
!!! GTATCTAAAGATTTGTTAGA+AGG + tig0037246:15692-15711 None:intergenic 25.0%
! CTTTAGATACCTATATATGT+AGG - tig0037246:15702-15721 Msa1456390:intron 25.0%
! CACTAGGATAAAAGATTATA+AGG + tig0037246:15804-15823 None:intergenic 25.0%
!! ATATCTTTATTTGACAAAGC+AGG - tig0037246:15893-15912 Msa1456390:intron 25.0%
!!! TTTTGATTATGTTACTCAGA+AGG - tig0037246:16026-16045 Msa1456390:intron 25.0%
! TTTGATTATGTTACTCAGAA+GGG - tig0037246:16027-16046 Msa1456390:intron 25.0%
! TTTATGAATGATTGTCTCAA+AGG + tig0037246:16232-16251 None:intergenic 25.0%
! AATCATTCATAAACCACATT+TGG - tig0037246:16239-16258 Msa1456390:intron 25.0%
! AAATAAAAGTAAGCCAAATG+TGG + tig0037246:16255-16274 None:intergenic 25.0%
!!! TACAAGTTTTGTTAGGAATA+TGG + tig0037246:16284-16303 None:intergenic 25.0%
!!! TCTCATTTACAAGTTTTGTT+AGG + tig0037246:16291-16310 None:intergenic 25.0%
! ATTATATCGTAATTCATGCT+AGG - tig0037246:16364-16383 Msa1456390:intron 25.0%
!!! CTTTTTTCTTTATAGGAAGT+AGG + tig0037246:16416-16435 None:intergenic 25.0%
!!! ATTTTTTGCTGATAAGAGAA+TGG - tig0037246:16578-16597 Msa1456390:CDS 25.0%
!!! TTTTTTGCTGATAAGAGAAT+GGG - tig0037246:16579-16598 Msa1456390:CDS 25.0%
!! TTTTATTACTCCTCAAAACT+AGG + tig0037246:16662-16681 None:intergenic 25.0%
! GTAGATAACAGGATATAAAA+TGG + tig0037246:16733-16752 None:intergenic 25.0%
! TATATCCTGTTATCTACATA+AGG - tig0037246:16736-16755 Msa1456390:intron 25.0%
!! TTTTTCCTTATGTAGATAAC+AGG + tig0037246:16744-16763 None:intergenic 25.0%
! AATTTATCAACTGTGTATAG+TGG + tig0037246:16780-16799 None:intergenic 25.0%
! GATAAATTATGTTCCTTACA+AGG - tig0037246:16792-16811 Msa1456390:CDS 25.0%
! TCATGAAGTTTACCTTATTA+TGG + tig0037246:16903-16922 None:intergenic 25.0%
! AAATGGTCAGAATAAAACTT+TGG - tig0037246:17018-17037 Msa1456390:intron 25.0%
!!! TGCCATTTTCTTTTTCATTT+TGG - tig0037246:17359-17378 Msa1456390:CDS 25.0%
! GTCGGTAAATCTAAAAAATT+TGG - tig0037246:17434-17453 Msa1456390:intron 25.0%
! TATCAAAAATAGAACCAAAC+AGG + tig0037246:17532-17551 None:intergenic 25.0%
! ATTAACAAGAAACATTCCAT+TGG + tig0037246:17701-17720 None:intergenic 25.0%
!! CAAAAATAAATTTGGTTCCA+AGG - tig0037246:17723-17742 Msa1456390:intron 25.0%
! TCATTGTAAACAGTAATTCT+AGG - tig0037246:17799-17818 Msa1456390:intron 25.0%
! ATGTAAAATACAAATGGTGT+TGG - tig0037246:18045-18064 Msa1456390:CDS 25.0%
! AAATCTGTAATATATCAAGC+AGG - tig0037246:18155-18174 Msa1456390:intron 25.0%
! TAAATTATCCTCTAACTGTT+CGG - tig0037246:18381-18400 Msa1456390:CDS 25.0%
!!! AAAGTAAAGTTCTGAAGTTT+TGG - tig0037246:18555-18574 Msa1456390:five_prime_UTR 25.0%
!! TATTTGTTGCCATTAAACAT+TGG - tig0037246:18600-18619 Msa1456390:five_prime_UTR 25.0%
GAAGATCTATGAGATAAAGT+TGG - tig0037246:13927-13946 Msa1456390:three_prime_UTR 30.0%
ATGAGATAAAGTTGGATAAC+TGG - tig0037246:13935-13954 Msa1456390:three_prime_UTR 30.0%
GGAATATCTAGAAATTTGGT+GGG + tig0037246:14478-14497 None:intergenic 30.0%
AGGAATATCTAGAAATTTGG+TGG + tig0037246:14479-14498 None:intergenic 30.0%
AGGAGGAATATCTAGAAATT+TGG + tig0037246:14482-14501 None:intergenic 30.0%
TTTGTGTTTGGATACATTGA+CGG - tig0037246:14554-14573 Msa1456390:intron 30.0%
! ACTTTATCTGAAATCATCTC+AGG - tig0037246:14927-14946 Msa1456390:intron 30.0%
AAATAAGCTAGTGAAACGAA+AGG + tig0037246:15076-15095 None:intergenic 30.0%
CTTGTATTTGTATACTAGGA+TGG - tig0037246:15119-15138 Msa1456390:intron 30.0%
ATTGTTTCAGTAGCAATGAT+AGG + tig0037246:15200-15219 None:intergenic 30.0%
! TCTGTTTGCTACAAAGTAAA+AGG - tig0037246:15260-15279 Msa1456390:intron 30.0%
AAAAACTGGAATGTTTCAAC+TGG - tig0037246:15410-15429 Msa1456390:CDS 30.0%
!! CTAAAGATTTGTTAGAAGGA+GGG + tig0037246:15688-15707 None:intergenic 30.0%
!! TCTAAAGATTTGTTAGAAGG+AGG + tig0037246:15689-15708 None:intergenic 30.0%
CTGAATAAGAAAAGCTCTTA+GGG + tig0037246:15830-15849 None:intergenic 30.0%
TCTGAATAAGAAAAGCTCTT+AGG + tig0037246:15831-15850 None:intergenic 30.0%
AACAATGACTTTCTATCAGA+AGG + tig0037246:15861-15880 None:intergenic 30.0%
AGGATCTAAACTTCTGATTA+GGG - tig0037246:15913-15932 Msa1456390:intron 30.0%
!! TATTTCTGAAACCATAGTGA+TGG - tig0037246:16153-16172 Msa1456390:intron 30.0%
!!! AAGTTTTGTTAGGAATATGG+AGG + tig0037246:16281-16300 None:intergenic 30.0%
!!! AGTGAGGCTTTTTTCTTTAT+AGG + tig0037246:16423-16442 None:intergenic 30.0%
CTCACTGTGCAAAAAATAAA+CGG - tig0037246:16437-16456 Msa1456390:intron 30.0%
CTAATATGTACCTTATTAGG+AGG + tig0037246:16486-16505 None:intergenic 30.0%
CTCCTAATAAGGTACATATT+AGG - tig0037246:16484-16503 Msa1456390:intron 30.0%
CACCTAATATGTACCTTATT+AGG + tig0037246:16489-16508 None:intergenic 30.0%
TAAAATGGAGTGAGCATAAA+AGG + tig0037246:16718-16737 None:intergenic 30.0%
ATTATGTTCCTTACAAGGAA+TGG - tig0037246:16797-16816 Msa1456390:CDS 30.0%
AATAAGATCCATTCCTTGTA+AGG + tig0037246:16808-16827 None:intergenic 30.0%
!! ACAAGGAATGGATCTTATTT+TGG - tig0037246:16809-16828 Msa1456390:intron 30.0%
!!! TTTTGCTACTTTATGCAGAT+AGG - tig0037246:16832-16851 Msa1456390:intron 30.0%
ATTCTTGTAGCTGACAAAAA+TGG - tig0037246:17001-17020 Msa1456390:intron 30.0%
GATGATATTGCATTTGTCAA+TGG - tig0037246:17100-17119 Msa1456390:intron 30.0%
! TTTTCAGAGTAGTTCTCTTT+CGG + tig0037246:17325-17344 None:intergenic 30.0%
CTGAAGAATCTTATCAGTAT+AGG + tig0037246:17413-17432 None:intergenic 30.0%
! TGCATGAGCTTTGTAAATAA+AGG - tig0037246:17952-17971 Msa1456390:intron 30.0%
! GCATGAGCTTTGTAAATAAA+GGG - tig0037246:17953-17972 Msa1456390:intron 30.0%
ATTTAGTGATGTTGTAACTC+AGG - tig0037246:18239-18258 Msa1456390:intron 30.0%
AAATTATCCTCTAACTGTTC+GGG - tig0037246:18382-18401 Msa1456390:CDS 30.0%
!! CGGTCATTTTAAATGATTTC+CGG - tig0037246:18459-18478 Msa1456390:CDS 30.0%
GATGAAGGACAATAATAGAT+GGG - tig0037246:18622-18641 Msa1456390:five_prime_UTR 30.0%
ATGAAGGACAATAATAGATG+GGG - tig0037246:18623-18642 Msa1456390:five_prime_UTR 30.0%
ATCGTTAATTGGCGAGTATA+CGG - tig0037246:13855-13874 Msa1456390:three_prime_UTR 35.0%
GTGGCAATTCAAACTTTCAA+CGG + tig0037246:13902-13921 None:intergenic 35.0%
AGATAAAGTTGGATAACTGG+AGG - tig0037246:13938-13957 Msa1456390:three_prime_UTR 35.0%
GATAAAGTTGGATAACTGGA+GGG - tig0037246:13939-13958 Msa1456390:three_prime_UTR 35.0%
GGTGAGAAAGAAGAATGATT+CGG - tig0037246:13998-14017 Msa1456390:three_prime_UTR 35.0%
TTATGTTGTGTACAGAGTCA+GGG - tig0037246:14024-14043 Msa1456390:three_prime_UTR 35.0%
TCTATTCATTTCTTGCTTGC+AGG - tig0037246:14381-14400 Msa1456390:intron 35.0%
TTTCTAGATATTCCTCCTTC+TGG - tig0037246:14484-14503 Msa1456390:intron 35.0%
TGAATGAATGACTAACCAGA+AGG + tig0037246:14502-14521 None:intergenic 35.0%
! TCTTCTTATCGCTGTGTTTT+TGG - tig0037246:14523-14542 Msa1456390:intron 35.0%
ACACCAATTTGTAGCTTCTA+CGG + tig0037246:14770-14789 None:intergenic 35.0%
AGGTAAAAATGAGTCTTGAG+AGG - tig0037246:14818-14837 Msa1456390:intron 35.0%
ATACTACTAAGCCGATGTTT+GGG + tig0037246:14876-14895 None:intergenic 35.0%
TATACTACTAAGCCGATGTT+TGG + tig0037246:14877-14896 None:intergenic 35.0%
AAGCATACAAACGTTAGAAG+TGG + tig0037246:15048-15067 None:intergenic 35.0%
! TAGGATGGTGTTAAAGAAAC+TGG - tig0037246:15134-15153 Msa1456390:intron 35.0%
TTGCTACAAAGTAAAAGGTC+TGG - tig0037246:15265-15284 Msa1456390:intron 35.0%
TGCTACAAAGTAAAAGGTCT+GGG - tig0037246:15266-15285 Msa1456390:intron 35.0%
TACTGCTGCATATTATGTTG+AGG - tig0037246:15456-15475 Msa1456390:CDS 35.0%
ACTGCTGCATATTATGTTGA+GGG - tig0037246:15457-15476 Msa1456390:CDS 35.0%
AGATCATGTATATGCAAAGC+CGG - tig0037246:15555-15574 Msa1456390:CDS 35.0%
ATGAAAACACACACATACAC+CGG + tig0037246:15577-15596 None:intergenic 35.0%
ATGTTTCACTCGGTCATTAT+AGG - tig0037246:15604-15623 Msa1456390:intron 35.0%
AATCAGGTGCCTACATATAT+AGG + tig0037246:15714-15733 None:intergenic 35.0%
CTTGAGCTTCTGTTTCATAA+AGG - tig0037246:15736-15755 Msa1456390:intron 35.0%
AGGTATGATTATTCTCTCCA+TGG - tig0037246:15756-15775 Msa1456390:intron 35.0%
CAGGATCTAAACTTCTGATT+AGG - tig0037246:15912-15931 Msa1456390:intron 35.0%
!! GAACTTCCATCCATTTTTGA+TGG - tig0037246:15935-15954 Msa1456390:intron 35.0%
TCTAGCTGATCCATCAAAAA+TGG + tig0037246:15948-15967 None:intergenic 35.0%
TGTAGCCTTTGAATCATCTT+GGG + tig0037246:15984-16003 None:intergenic 35.0%
ATGTAGCCTTTGAATCATCT+TGG + tig0037246:15985-16004 None:intergenic 35.0%
AGATGATTCAAAGGCTACAT+TGG - tig0037246:15985-16004 Msa1456390:intron 35.0%
ATCAAAACCAACACTACCTT+TGG + tig0037246:16013-16032 None:intergenic 35.0%
ATTATCGTCATGCAAAGAGA+TGG + tig0037246:16202-16221 None:intergenic 35.0%
GAGATGAAAAGTAGTACATC+AGG - tig0037246:16318-16337 Msa1456390:intron 35.0%
TCTTTATAGGAAGTAGGACT+GGG + tig0037246:16410-16429 None:intergenic 35.0%
TTCTTTATAGGAAGTAGGAC+TGG + tig0037246:16411-16430 None:intergenic 35.0%
!!! CGTTTATTTTTTGCACAGTG+AGG + tig0037246:16439-16458 None:intergenic 35.0%
CTTGAACTTATTGCTTGTGT+TGG - tig0037246:16555-16574 Msa1456390:CDS 35.0%
!!! AACATTGAGTCCTAGTTTTG+AGG - tig0037246:16649-16668 Msa1456390:intron 35.0%
AGCATCTGTTCTCCATAATA+AGG - tig0037246:16888-16907 Msa1456390:intron 35.0%
! AGCTGTGACACAACAATTTT+AGG - tig0037246:16940-16959 Msa1456390:intron 35.0%
!!! TTTTAGGTTCGTGCATTTTC+AGG - tig0037246:16956-16975 Msa1456390:intron 35.0%
!! TTTAGGTTCGTGCATTTTCA+GGG - tig0037246:16957-16976 Msa1456390:intron 35.0%
ATTGAACTGCACACTTTCAT+GGG + tig0037246:17074-17093 None:intergenic 35.0%
TGAAGTTTCAGTTATCACTG+CGG - tig0037246:17189-17208 Msa1456390:intron 35.0%
!! CTAGAAATTGGCTTGGTATA+CGG + tig0037246:17282-17301 None:intergenic 35.0%
! CATAGATTGGTCCTAGAAAT+TGG + tig0037246:17294-17313 None:intergenic 35.0%
!! TTCTAGGACCAATCTATGTT+AGG - tig0037246:17296-17315 Msa1456390:intron 35.0%
TTCGGTTTCCTAACATAGAT+TGG + tig0037246:17307-17326 None:intergenic 35.0%
CTGATAAGATTCTTCAGTGT+CGG - tig0037246:17416-17435 Msa1456390:intron 35.0%
TTGCTCTATTCTGTTCTCTT+TGG - tig0037246:17477-17496 Msa1456390:intron 35.0%
CAAAAGGTAGGCATCTAAAA+TGG + tig0037246:17508-17527 None:intergenic 35.0%
ATAGAACCAAACAGGACAAA+AGG + tig0037246:17524-17543 None:intergenic 35.0%
TCACATACTAACAAGATCCA+TGG + tig0037246:17609-17628 None:intergenic 35.0%
!!! CTTTGCCCCAAACATTTTTT+AGG - tig0037246:17638-17657 Msa1456390:intron 35.0%
AAGATTTCCTTCCAAGTTAG+AGG - tig0037246:17664-17683 Msa1456390:intron 35.0%
CACAGTGATTTCAGTTACAT+TGG + tig0037246:17920-17939 None:intergenic 35.0%
ATCGGAGAAAAGAACAAGAA+GGG + tig0037246:17984-18003 None:intergenic 35.0%
AATCGGAGAAAAGAACAAGA+AGG + tig0037246:17985-18004 None:intergenic 35.0%
TCAATTTCAAGATGTAACCC+AGG + tig0037246:18020-18039 None:intergenic 35.0%
! AATACAAATGGTGTTGGACA+AGG - tig0037246:18051-18070 Msa1456390:CDS 35.0%
AAGTGTGTGCATTCACAATT+TGG + tig0037246:18096-18115 None:intergenic 35.0%
TGATGTTGTAACTCAGGTAT+TGG - tig0037246:18245-18264 Msa1456390:CDS 35.0%
GAAGCTGAAGAAAATATGAG+CGG - tig0037246:18332-18351 Msa1456390:CDS 35.0%
TGCCATTAAACATTGGATGA+AGG - tig0037246:18607-18626 Msa1456390:five_prime_UTR 35.0%
GTCCTTCATCCAATGTTTAA+TGG + tig0037246:18612-18631 None:intergenic 35.0%
GGATGAAGGACAATAATAGA+TGG - tig0037246:18621-18640 Msa1456390:five_prime_UTR 35.0%
TCGTTAATTGGCGAGTATAC+GGG - tig0037246:13856-13875 Msa1456390:three_prime_UTR 40.0%
TCTCATAGATCTTCAACACG+TGG + tig0037246:13921-13940 None:intergenic 40.0%
! TACGAAGAAGTCTAGAACAG+AGG - tig0037246:13973-13992 Msa1456390:three_prime_UTR 40.0%
! ACGAAGAAGTCTAGAACAGA+GGG - tig0037246:13974-13993 Msa1456390:three_prime_UTR 40.0%
! GAGAAAGAAGAATGATTCGG+CGG - tig0037246:14001-14020 Msa1456390:three_prime_UTR 40.0%
GTTATGTTGTGTACAGAGTC+AGG - tig0037246:14023-14042 Msa1456390:three_prime_UTR 40.0%
TGTTGTGGTGAAAGTAGAAG+TGG + tig0037246:14052-14071 None:intergenic 40.0%
! GGGTTTCTTCTTGTTTGTTG+TGG + tig0037246:14067-14086 None:intergenic 40.0%
AAGAAACCCGTTGTTCTGTT+GGG - tig0037246:14078-14097 Msa1456390:three_prime_UTR 40.0%
AGGACTATAGTAGACACTTG+AGG + tig0037246:14108-14127 None:intergenic 40.0%
GCAACTTCAAAGGAAGAATG+TGG + tig0037246:14159-14178 None:intergenic 40.0%
GACAATAGCAGCAACTTCAA+AGG + tig0037246:14169-14188 None:intergenic 40.0%
AAAACTTTCACTCTCTCCCT+TGG - tig0037246:14221-14240 Msa1456390:CDS 40.0%
GGAACCTCAGTTATGCATTA+CGG - tig0037246:14432-14451 Msa1456390:intron 40.0%
TTATGCATTACGGCTGCTTA+TGG - tig0037246:14442-14461 Msa1456390:intron 40.0%
ATGAATGACTAACCAGAAGG+AGG + tig0037246:14499-14518 None:intergenic 40.0%
TTGCCGTAGAAGCTACAAAT+TGG - tig0037246:14764-14783 Msa1456390:intron 40.0%
! GTGCTTTTGTGGATGCAAAT+TGG - tig0037246:14848-14867 Msa1456390:intron 40.0%
GATAGATTGGCAAAAGGCTA+GGG + tig0037246:14968-14987 None:intergenic 40.0%
TGGCATGAGATGAAGGAAAA+CGG + tig0037246:15028-15047 None:intergenic 40.0%
TTAGAAGTGGCATGAGATGA+AGG + tig0037246:15035-15054 None:intergenic 40.0%
GCTACAAAGTAAAAGGTCTG+GGG - tig0037246:15267-15286 Msa1456390:intron 40.0%
CTACAAAGTAAAAGGTCTGG+GGG - tig0037246:15268-15287 Msa1456390:intron 40.0%
AACTGGAATGTTTCAACTGG+TGG - tig0037246:15413-15432 Msa1456390:CDS 40.0%
CATAGCTGTCATGTTTCACT+CGG - tig0037246:15594-15613 Msa1456390:intron 40.0%
AACAGAAGCTCAAGCAAATC+AGG + tig0037246:15730-15749 None:intergenic 40.0%
AAAGCTCTTAGGGTAACACT+AGG + tig0037246:15820-15839 None:intergenic 40.0%
GCTGATCCATCAAAAATGGA+TGG + tig0037246:15944-15963 None:intergenic 40.0%
ACAACCCCAAGATGATTCAA+AGG - tig0037246:15976-15995 Msa1456390:intron 40.0%
GTAGCCTTTGAATCATCTTG+GGG + tig0037246:15983-16002 None:intergenic 40.0%
!! GCATTTTTGAGCCATCACTA+TGG + tig0037246:16167-16186 None:intergenic 40.0%
GATGGCTCAAAAATGCAACA+AGG - tig0037246:16171-16190 Msa1456390:intron 40.0%
TCAGAACACACCTCCTAATA+AGG - tig0037246:16473-16492 Msa1456390:intron 40.0%
TATTAGGTGCAAGAGCTGTA+AGG - tig0037246:16500-16519 Msa1456390:intron 40.0%
AAAGATAGCCATGATTCGTC+TGG + tig0037246:16859-16878 None:intergenic 40.0%
! AGAATCTTTGCTCTAGATCC+TGG + tig0037246:16986-17005 None:intergenic 40.0%
CATTGAACTGCACACTTTCA+TGG + tig0037246:17075-17094 None:intergenic 40.0%
TGCATTTGTCAATGGTGCAT+TGG - tig0037246:17108-17127 Msa1456390:intron 40.0%
! ATTGGTGTTTCCATGTGGAA+GGG - tig0037246:17126-17145 Msa1456390:intron 40.0%
CTACCAGAAAACACTTGTCT+AGG + tig0037246:17236-17255 None:intergenic 40.0%
!! AGACAAGTGTTTTCTGGTAG+AGG - tig0037246:17236-17255 Msa1456390:intron 40.0%
!! GACAAGTGTTTTCTGGTAGA+GGG - tig0037246:17237-17256 Msa1456390:intron 40.0%
CGTATACCAAGCCAATTTCT+AGG - tig0037246:17280-17299 Msa1456390:intron 40.0%
ATTGGTCCTAGAAATTGGCT+TGG + tig0037246:17289-17308 None:intergenic 40.0%
TCAGTATAGGAACAAGCAAG+AGG + tig0037246:17400-17419 None:intergenic 40.0%
AACCAAACAGGACAAAAGGT+AGG + tig0037246:17520-17539 None:intergenic 40.0%
ATTTCCTTCCAAGTTAGAGG+TGG - tig0037246:17667-17686 Msa1456390:intron 40.0%
ATTTCCACCTCTAACTTGGA+AGG + tig0037246:17674-17693 None:intergenic 40.0%
TCTCATTTCCACCTCTAACT+TGG + tig0037246:17678-17697 None:intergenic 40.0%
!! TAACAGTCAAAAGAGCACCT+TGG + tig0037246:17743-17762 None:intergenic 40.0%
! AAGAAGTCTAGAACAGAGGG+AGG - tig0037246:13977-13996 Msa1456390:three_prime_UTR 45.0%
GAAGAAACCCGTTGTTCTGT+TGG - tig0037246:14077-14096 Msa1456390:three_prime_UTR 45.0%
AGAATGTGGAGAAGCAGAAG+CGG + tig0037246:14145-14164 None:intergenic 45.0%
TTTGCCTCTGTCTCTTCTAG+CGG + tig0037246:14202-14221 None:intergenic 45.0%
TCAAGAGCAAAGTTGGCCAA+GGG + tig0037246:14240-14259 None:intergenic 45.0%
TTCAAGAGCAAAGTTGGCCA+AGG + tig0037246:14241-14260 None:intergenic 45.0%
GCCAACTTTGCTCTTGAAAG+AGG - tig0037246:14243-14262 Msa1456390:CDS 45.0%
GCCTCTTTCAAGAGCAAAGT+TGG + tig0037246:14247-14266 None:intergenic 45.0%
! ATTTTCACTCCTCAACGTGC+TGG - tig0037246:14282-14301 Msa1456390:intron 45.0%
ATTACATCTCCAGCACGTTG+AGG + tig0037246:14294-14313 None:intergenic 45.0%
AGAGTGAGTGAGCGAGTAAT+TGG + tig0037246:14364-14383 None:intergenic 45.0%
!! GAGGTTTTGTCGTGCTTTTG+TGG - tig0037246:14837-14856 Msa1456390:intron 45.0%
GCAAATTGGCACCCAAACAT+CGG - tig0037246:14862-14881 Msa1456390:intron 45.0%
CGATAGATTGGCAAAAGGCT+AGG + tig0037246:14969-14988 None:intergenic 45.0%
! AGCCTTTTGCCAATCTATCG+TGG - tig0037246:14969-14988 Msa1456390:intron 45.0%
CACCACGATAGATTGGCAAA+AGG + tig0037246:14974-14993 None:intergenic 45.0%
!! TCCAGTTCAAAGAGCATTGC+AGG - tig0037246:14998-15017 Msa1456390:intron 45.0%
ACCTGCAATGCTCTTTGAAC+TGG + tig0037246:15002-15021 None:intergenic 45.0%
!! ACATGGCCTTTTCTTGGTGT+CGG - tig0037246:15292-15311 Msa1456390:intron 45.0%
! ATGAGAAGAGAGTGTGTGCA+AGG + tig0037246:15630-15649 None:intergenic 45.0%
GCACACACTCTCTTCTCATA+TGG - tig0037246:15631-15650 Msa1456390:intron 45.0%
AAAGGCTACATTGGCACCAA+AGG - tig0037246:15994-16013 Msa1456390:intron 45.0%
ATTGGCACCAAAGGTAGTGT+TGG - tig0037246:16003-16022 Msa1456390:intron 45.0%
GCATTGGGCAAACACTATAG+AGG + tig0037246:16103-16122 None:intergenic 45.0%
TCGTAATTCATGCTAGGACG+TGG - tig0037246:16370-16389 Msa1456390:intron 45.0%
CGTAATTCATGCTAGGACGT+GGG - tig0037246:16371-16390 Msa1456390:intron 45.0%
GTAATTCATGCTAGGACGTG+GGG - tig0037246:16372-16391 Msa1456390:intron 45.0%
AGATAGGTCCAGACGAATCA+TGG - tig0037246:16848-16867 Msa1456390:intron 45.0%
! CATTGGTGTTTCCATGTGGA+AGG - tig0037246:17125-17144 Msa1456390:intron 45.0%
! TTGGTGTTTCCATGTGGAAG+GGG - tig0037246:17127-17146 Msa1456390:intron 45.0%
AACTACACATACCTCGAGTG+TGG + tig0037246:17155-17174 None:intergenic 45.0%
! CTGCCTAGACAAGTGTTTTC+TGG - tig0037246:17230-17249 Msa1456390:intron 45.0%
!! TGTTTTCTGGTAGAGGGTAC+AGG - tig0037246:17243-17262 Msa1456390:intron 45.0%
! TGCCTACCTTTTGTCCTGTT+TGG - tig0037246:17515-17534 Msa1456390:intron 45.0%
AGAGGTGGAAATGAGACCAA+TGG - tig0037246:17682-17701 Msa1456390:intron 45.0%
! TCTTTTCTCCGATTGCTCTG+TGG - tig0037246:17991-18010 Msa1456390:intron 45.0%
ACTTCAGCTCCCTGGAAAAA+AGG - tig0037246:18269-18288 Msa1456390:CDS 45.0%
!!! CATTGACCGCCTTTTTTCCA+GGG + tig0037246:18281-18300 None:intergenic 45.0%
! AATGCAGCTGCTTTCTGGAA+TGG - tig0037246:18297-18316 Msa1456390:CDS 45.0%
! TTTTCTTCAGCTTCTGTCCC+CGG + tig0037246:18326-18345 None:intergenic 45.0%
GCTGAAGAAAATATGAGCGG+CGG - tig0037246:18335-18354 Msa1456390:CDS 45.0%
TCAGTCCTCACAAACTCCTA+CGG + tig0037246:18664-18683 None:intergenic 45.0%
TTGCCTCTGTCTCTTCTAGC+GGG + tig0037246:14201-14220 None:intergenic 50.0%
GCAGCCGTAATGCATAACTG+AGG + tig0037246:14439-14458 None:intergenic 50.0%
ACTGTTCGTGCACTTGATGC+TGG - tig0037246:15173-15192 Msa1456390:intron 50.0%
!! GTAGTGCCGACACCAAGAAA+AGG + tig0037246:15301-15320 None:intergenic 50.0%
GAAGTAGGACTGGGAACACA+AGG + tig0037246:16401-16420 None:intergenic 50.0%
!! AGGTTCGTGCATTTTCAGGG+TGG - tig0037246:16960-16979 Msa1456390:intron 50.0%
! GGTGCATTGGTGTTTCCATG+TGG - tig0037246:17121-17140 Msa1456390:intron 50.0%
! AACAAGATCCATGGCGCTGA+AGG + tig0037246:17600-17619 None:intergenic 50.0%
CCAGGATTCCACAGAGCAAT+CGG + tig0037246:18002-18021 None:intergenic 50.0%
CGATTGCTCTGTGGAATCCT+GGG - tig0037246:18000-18019 Msa1456390:intron 50.0%
GACAAGGCGACAATGTCTTC+AGG - tig0037246:18067-18086 Msa1456390:CDS 50.0%
GTATTGGAACTTCAGCTCCC+TGG - tig0037246:18261-18280 Msa1456390:CDS 50.0%
TCAGCTCCCTGGAAAAAAGG+CGG - tig0037246:18272-18291 Msa1456390:CDS 50.0%
!!! GCATTGACCGCCTTTTTTCC+AGG + tig0037246:18282-18301 None:intergenic 50.0%
CCTCTAACTGTTCGGGCAAT+CGG - tig0037246:18389-18408 Msa1456390:CDS 50.0%
TACGTCCGTAGGAGTTTGTG+AGG - tig0037246:18656-18675 Msa1456390:five_prime_UTR 50.0%
AGGTGCGCCCAACAGAACAA+CGG + tig0037246:14088-14107 None:intergenic 55.0%
! AAGCGGTGAGAAGTGCATCG+AGG + tig0037246:14128-14147 None:intergenic 55.0%
GGAGCAGCACCACGATAGAT+TGG + tig0037246:14981-15000 None:intergenic 55.0%
! GTAAAAGGTCTGGGGGCACA+TGG - tig0037246:15275-15294 Msa1456390:intron 55.0%
TTCATGGGTGCAAACTCGCG+TGG + tig0037246:17059-17078 None:intergenic 55.0%
AGTGTGGTTCCCCTTCCACA+TGG + tig0037246:17139-17158 None:intergenic 55.0%
! CATGGCGCTGAAGGTAGCAT+CGG + tig0037246:17591-17610 None:intergenic 55.0%
CCGATTGCTCTGTGGAATCC+TGG - tig0037246:17999-18018 Msa1456390:intron 55.0%
! CGGTCAATGCAGCTGCTTTC+TGG - tig0037246:18292-18311 Msa1456390:CDS 55.0%
!! CTGCTTTCTGGAATGGCCTC+CGG - tig0037246:18304-18323 Msa1456390:CDS 55.0%
!! TGCTTTCTGGAATGGCCTCC+GGG - tig0037246:18305-18324 Msa1456390:CDS 55.0%
CCGATTGCCCGAACAGTTAG+AGG + tig0037246:18392-18411 None:intergenic 55.0%
!! GTGCTGTTTGCTACGTCCGT+AGG - tig0037246:18645-18664 Msa1456390:five_prime_UTR 55.0%
GGTGCGCCCAACAGAACAAC+GGG + tig0037246:14087-14106 None:intergenic 60.0%
CCTCTGTCTCTTCTAGCGGG+TGG + tig0037246:14198-14217 None:intergenic 60.0%
CCACCCGCTAGAAGAGACAG+AGG - tig0037246:14195-14214 Msa1456390:exon 60.0%
!! GGGGGCACATGGCCTTTTCT+TGG - tig0037246:15286-15305 Msa1456390:intron 60.0%
!! CGTGCATTTTCAGGGTGGCC+AGG - tig0037246:16965-16984 Msa1456390:intron 60.0%
TGGAAGGGGAACCACACTCG+AGG - tig0037246:17141-17160 Msa1456390:intron 60.0%
! GCGCTGAAGGTAGCATCGGA+TGG + tig0037246:17587-17606 None:intergenic 60.0%
CGATGCTACCTTCAGCGCCA+TGG - tig0037246:17589-17608 Msa1456390:intron 60.0%
!! GCTTTCTGGAATGGCCTCCG+GGG - tig0037246:18306-18325 Msa1456390:CDS 60.0%
TCTTCAGCTTCTGTCCCCGG+AGG + tig0037246:18323-18342 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0037246 gene 13850 18698 13850 ID=Msa1456390;Name=Msa1456390
tig0037246 mRNA 13850 18698 13850 ID=Msa1456390-mRNA-1;Parent=Msa1456390;Name=Msa1456390-mRNA-1;_AED=0.23;_eAED=0.23;_QI=162|1|1|1|1|1|9|348|353
tig0037246 exon 13850 14287 13850 ID=Msa1456390-mRNA-1:exon:20698;Parent=Msa1456390-mRNA-1
tig0037246 exon 15386 15586 15386 ID=Msa1456390-mRNA-1:exon:20697;Parent=Msa1456390-mRNA-1
tig0037246 exon 15639 15698 15639 ID=Msa1456390-mRNA-1:exon:20696;Parent=Msa1456390-mRNA-1
tig0037246 exon 16533 16633 16533 ID=Msa1456390-mRNA-1:exon:20695;Parent=Msa1456390-mRNA-1
tig0037246 exon 16791 16824 16791 ID=Msa1456390-mRNA-1:exon:20694;Parent=Msa1456390-mRNA-1
tig0037246 exon 17307 17411 17307 ID=Msa1456390-mRNA-1:exon:20693;Parent=Msa1456390-mRNA-1
tig0037246 exon 17529 17599 17529 ID=Msa1456390-mRNA-1:exon:20692;Parent=Msa1456390-mRNA-1
tig0037246 exon 18043 18145 18043 ID=Msa1456390-mRNA-1:exon:20691;Parent=Msa1456390-mRNA-1
tig0037246 exon 18240 18698 18240 ID=Msa1456390-mRNA-1:exon:20690;Parent=Msa1456390-mRNA-1
tig0037246 five_prime_UTR 18537 18698 18537 ID=Msa1456390-mRNA-1:five_prime_utr;Parent=Msa1456390-mRNA-1
tig0037246 CDS 18240 18536 18240 ID=Msa1456390-mRNA-1:cds;Parent=Msa1456390-mRNA-1
tig0037246 CDS 18043 18145 18043 ID=Msa1456390-mRNA-1:cds;Parent=Msa1456390-mRNA-1
tig0037246 CDS 17529 17599 17529 ID=Msa1456390-mRNA-1:cds;Parent=Msa1456390-mRNA-1
tig0037246 CDS 17307 17411 17307 ID=Msa1456390-mRNA-1:cds;Parent=Msa1456390-mRNA-1
tig0037246 CDS 16791 16824 16791 ID=Msa1456390-mRNA-1:cds;Parent=Msa1456390-mRNA-1
tig0037246 CDS 16533 16633 16533 ID=Msa1456390-mRNA-1:cds;Parent=Msa1456390-mRNA-1
tig0037246 CDS 15639 15698 15639 ID=Msa1456390-mRNA-1:cds;Parent=Msa1456390-mRNA-1
tig0037246 CDS 15386 15586 15386 ID=Msa1456390-mRNA-1:cds;Parent=Msa1456390-mRNA-1
tig0037246 CDS 14198 14287 14198 ID=Msa1456390-mRNA-1:cds;Parent=Msa1456390-mRNA-1
tig0037246 three_prime_UTR 13850 14197 13850 ID=Msa1456390-mRNA-1:three_prime_utr;Parent=Msa1456390-mRNA-1
Gene Sequence

>Msa1456390

ATGATTCGGCGGTTATGTTGTGTACAGAGTCAGGGTTCCACTTCTACTTTCACCACAACAAACAAGAAGAAACCCGTTGTTCTGTTGGGCGCACCTCAAGTGTCTACTATAGTCCTCGATGCACTTCTCACCGCTTCTGCTTCTCCACATTCTTCCTTTGAAGTTGCTGCTATTGTCACTCAGCCACCCGCTAGAAGAGACAGAGGCAAAAAACTTTCACTCTCTCCCTTGGCCAACTTTGCTCTTGAAAGAGGCTTCTCTTCTCATCTTATTTTCACTCCTCAACGTGCTGGAGATGATACTTTCTTATCAGATTTAAAAGCTTTGGAACCTCAGTTATGCATTACGGCTGCTTATGGCAATATATTACCCACCAAATTTCTAGATATTCCTCCTTCTGGAACAGTCAACATTCACCCTAGCCTTTTGCCAATCTATCGTGGTGCTGCTCCAGTTCAAAGAGCATTGCAGGATGGTGTTAAAGAAACTGGAGTATCGTTAGCATTCACTGTTCGTGCACTTGATGCTGGTCCTATCATTGCTACTGAAACAATTCAAGTTGATGATCATATAAAGGCACCTGATTTGCTTGAGCTTCTGTTTCATAAAGGATCTAAACTTCTGATTAGGGAACTTCCATCCATTTTTGATGGATCAGCTAGAGCGAATGCACAACCCCAAGATGATTCAAAGGCTACATTGGCACCAAAGATAGGTCCAGACGAATCATGGCTATCTTTTGATCAAGAAGCATCTGTTCTCCATAATAAGGTTCGTGCATTTTCAGGGTGGCCAGGATCTAGAGCAAAGATTCTTGTAGCTGACAAAAATGGTCAGAATAAAACTTTGGAGATTAAAATCATAACCACGCGAGTTTGCACCCATGAAAGTGTGCAGTTCAATGAAGCAGATGATATTGCATTTGTCAATGGTGCATTGGTGTTTCCATGTGGAAGGGGAACCACACTCGAGGTATTGGAACTTCAGCTCCCTGGAAAAAAGGCGGTCAATGCAGCTGCTTTCTGGAATGGCCTCCGGGGACAGAAGCTGAAGAAAATATGA

Protein sequence

>Msa1456390

MIRRLCCVQSQGSTSTFTTTNKKKPVVLLGAPQVSTIVLDALLTASASPHSSFEVAAIVTQPPARRDRGKKLSLSPLANFALERGFSSHLIFTPQRAGDDTFLSDLKALEPQLCITAAYGNILPTKFLDIPPSGTVNIHPSLLPIYRGAAPVQRALQDGVKETGVSLAFTVRALDAGPIIATETIQVDDHIKAPDLLELLFHKGSKLLIRELPSIFDGSARANAQPQDDSKATLAPKIGPDESWLSFDQEASVLHNKVRAFSGWPGSRAKILVADKNGQNKTLEIKIITTRVCTHESVQFNEADDIAFVNGALVFPCGRGTTLEVLELQLPGKKAVNAAAFWNGLRGQKLKKI*