AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1131300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1131300 MtrunA17_Chr4g0073731 95.865 266 11 0 1 266 1 266 0.0 499
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1131300 AT2G24060.1 55.556 270 98 4 1 254 1 264 1.61e-89 268
Msa1131300 AT4G30690.1 55.970 268 105 5 1 263 14 273 3.16e-87 261
Msa1131300 AT4G30690.2 49.254 268 95 5 1 263 14 245 2.31e-72 222
Msa1131300 AT1G34360.2 34.783 115 71 2 82 194 23 135 4.53e-11 63.2
Msa1131300 AT1G34360.1 34.783 115 71 2 82 194 89 201 4.57e-11 63.2
Msa1131300 AT1G34360.3 33.913 115 72 2 82 194 89 201 4.64e-11 63.2

Find 83 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCTTCTGCAGCTTTCTT+TGG 0.214808 7_3:+83905046 None:intergenic
GGATTTGAAGGAGCTCAAAA+TGG 0.307470 7_3:-83906492 Msa1131300:CDS
ATAGAGGCAGCCTTGTCTAT+TGG 0.330859 7_3:-83904858 Msa1131300:three_prime_UTR
TTGTTAGAATAATGAATTAC+AGG 0.335848 7_3:-83907926 Msa1131300:intron
TATTGATCAGAGTCAGAATA+TGG 0.349868 7_3:-83908440 Msa1131300:CDS
TTAGAATACGTACCTAAGTT+TGG 0.359504 7_3:+83908561 None:intergenic
TTATTGAAGAGAGCGGTTAA+TGG 0.365488 7_3:+83904813 None:intergenic
CACTAGAAGTTTAATTATAG+AGG 0.365740 7_3:-83904874 Msa1131300:three_prime_UTR
TGAAGATGCTGAACTTGATT+TGG 0.377323 7_3:-83908380 Msa1131300:intron
TCATCGTCAGCATCTTTGTT+AGG 0.382465 7_3:+83908601 None:intergenic
CCAATGAAAATTTGAGGATT+GGG 0.386900 7_3:+83908932 None:intergenic
GCGGTTAATGGAATCCCTTC+AGG 0.398818 7_3:+83904825 None:intergenic
ACCAATGAAAATTTGAGGAT+TGG 0.404550 7_3:+83908931 None:intergenic
TGCGAGGCTTTGAGTTTAAC+GGG 0.413405 7_3:+83908772 None:intergenic
GAACAACCAATGAAAATTTG+AGG 0.421285 7_3:+83908926 None:intergenic
ATGCGAGGCTTTGAGTTTAA+CGG 0.431987 7_3:+83908771 None:intergenic
TAATTCATTATTCTAACAAC+AGG 0.442385 7_3:+83907930 None:intergenic
AAGGTCATAGTAAACCTTAA+AGG 0.442796 7_3:-83905540 Msa1131300:CDS
ACTGCATAAGATTATCATCC+TGG 0.451475 7_3:+83904752 None:intergenic
AACGGGAACGACGGTGGTGG+TGG 0.470380 7_3:+83908789 None:intergenic
GTGTAAACCAACGCCATGGC+TGG 0.473725 7_3:-83908817 Msa1131300:exon
CGTCCTTCCGCCTACGGTGG+CGG 0.475627 7_3:-83908646 Msa1131300:CDS
GATTTGAAGGAGCTCAAAAT+GGG 0.476048 7_3:-83906491 Msa1131300:CDS
GCTTTCTTTGGTGTTTCTTG+AGG 0.476083 7_3:+83905058 None:intergenic
TGGAGTAGTATCTCTTGATC+AGG 0.480101 7_3:-83908416 Msa1131300:CDS
AACCTCCGTCCTTCCGCCTA+CGG 0.484697 7_3:-83908652 Msa1131300:CDS
AGGGAGAAGATTGAAAATTG+AGG 0.492839 7_3:+83908716 None:intergenic
GTGGGAAGGAAGAGTGAATG+AGG 0.494919 7_3:+83908696 None:intergenic
AGCTAGTCGGATGGATTTGA+AGG 0.496946 7_3:-83906504 Msa1131300:CDS
GGGAGAAGATTGAAAATTGA+GGG 0.497096 7_3:+83908717 None:intergenic
GAAATAGGTCGAATACCGTT+AGG 0.499801 7_3:-83908465 Msa1131300:intron
GCGTTGGTTTACACTTTCCA+CGG 0.503109 7_3:+83908826 None:intergenic
GATTGAAAATTGAGGGAATG+AGG 0.509324 7_3:+83908724 None:intergenic
CCTTCCGCCTACGGTGGCGG+TGG 0.531353 7_3:-83908643 Msa1131300:CDS
TGGGAAGGAAGAGTGAATGA+GGG 0.537972 7_3:+83908697 None:intergenic
GAAAATTTGAGGATTGGGCC+TGG 0.541739 7_3:+83908937 None:intergenic
GATCAGCAGAAGAAAAGTGC+TGG 0.542127 7_3:-83906629 Msa1131300:intron
CAACTGATATTGCTCTGTTG+TGG 0.543060 7_3:-83904953 Msa1131300:three_prime_UTR
CGCCACCGTAGGCGGAAGGA+CGG 0.545325 7_3:+83908647 None:intergenic
TCGTCAGCATCTTTGTTAGG+AGG 0.545365 7_3:+83908604 None:intergenic
TCCCACGCAACCGTTCGTTA+CGG 0.549673 7_3:-83908679 Msa1131300:CDS
CATAGTTGAAAACTTCCATA+CGG 0.554407 7_3:-83905003 Msa1131300:exon
AGCTGCAGAAGATGAAGTCT+CGG 0.558494 7_3:-83905038 Msa1131300:CDS
TCAGCATCTTTGTTAGGAGG+AGG 0.559988 7_3:+83908607 None:intergenic
CTCTCGACCTCTCCAAACTT+AGG 0.560626 7_3:-83908573 Msa1131300:intron
TAACGAACGGTTGCGTGGGA+AGG 0.567710 7_3:+83908682 None:intergenic
TTCATTATTCTAACAACAGG+AGG 0.568824 7_3:+83907933 None:intergenic
GATCAGAGTCAGAATATGGT+TGG 0.572223 7_3:-83908436 Msa1131300:CDS
ATTGGAACGCTAAAGCCTGA+AGG 0.572980 7_3:-83904840 Msa1131300:three_prime_UTR
TTTGTGGGAATTTAATAACC+AGG 0.573535 7_3:-83908955 None:intergenic
GAAGTTGCCACCGCCACCGT+AGG 0.573642 7_3:+83908636 None:intergenic
CTGCATAAGATTATCATCCT+GGG 0.575164 7_3:+83904753 None:intergenic
ACCGTAACGAACGGTTGCGT+GGG 0.576730 7_3:+83908678 None:intergenic
TCATTTGCAGCTTGCAACAG+AGG 0.582038 7_3:-83905149 Msa1131300:intron
GTTGCCACCGCCACCGTAGG+CGG 0.587312 7_3:+83908639 None:intergenic
CTTTAGCGTTCCAATAGACA+AGG 0.590736 7_3:+83904848 None:intergenic
ATAGTTGAAAACTTCCATAC+GGG 0.590817 7_3:-83905002 Msa1131300:exon
GGTAATGCCAGCCATGGCGT+TGG 0.603488 7_3:+83908810 None:intergenic
TTGGAACGCTAAAGCCTGAA+GGG 0.603709 7_3:-83904839 Msa1131300:three_prime_UTR
GAGTTTAACGGGAACGACGG+TGG 0.603870 7_3:+83908783 None:intergenic
CCACCGCCACCGTAGGCGGA+AGG 0.608125 7_3:+83908643 None:intergenic
CACCGTAGGCGGAAGGACGG+AGG 0.610477 7_3:+83908650 None:intergenic
TTTAACGGGAACGACGGTGG+TGG 0.617395 7_3:+83908786 None:intergenic
TTTGCAGCTTGCAACAGAGG+AGG 0.620672 7_3:-83905146 Msa1131300:intron
TACGGGATTCTAGTTGTCGA+AGG 0.622537 7_3:-83904985 Msa1131300:three_prime_UTR
GGTGGTGGTAATGCCAGCCA+TGG 0.622734 7_3:+83908804 None:intergenic
TCTTGATCAGGCAATTCGAA+TGG 0.623560 7_3:-83908404 Msa1131300:CDS
TCGACAACTAGAATCCCGTA+TGG 0.629069 7_3:+83904988 None:intergenic
ACAGAGCAATATCAGTTGCA+AGG 0.629380 7_3:+83904958 None:intergenic
TTTATTAGAGAATAGATGCG+AGG 0.635663 7_3:+83908756 None:intergenic
ATACTTACTAGAACATGCAT+CGG 0.651186 7_3:-83908856 Msa1131300:five_prime_UTR
GAAAGTGTAAACCAACGCCA+TGG 0.651302 7_3:-83908821 Msa1131300:exon
ACTCTGATCAATAAGCCTAA+CGG 0.652818 7_3:+83908450 None:intergenic
GAGGTTAACACCGTAACGAA+CGG 0.655700 7_3:+83908669 None:intergenic
GAATACATTATTGAAGAGAG+CGG 0.659540 7_3:+83904806 None:intergenic
ATTCATAGAACAACAGCACA+AGG 0.662773 7_3:-83904787 Msa1131300:three_prime_UTR
TTTGAGTTTAACGGGAACGA+CGG 0.669820 7_3:+83908780 None:intergenic
CTGTACGTTTGAAAGCTGCA+CGG 0.670288 7_3:-83905683 Msa1131300:CDS
GTAGGTAATAGTATCTGCAG+AGG 0.675285 7_3:-83907961 Msa1131300:intron
ATACGTACCTAAGTTTGGAG+AGG 0.687696 7_3:+83908566 None:intergenic
CATGCATCGGAGTTGAACCG+TGG 0.702183 7_3:-83908843 Msa1131300:five_prime_UTR
ACAAGGCTGATCGATCACCC+AGG 0.702899 7_3:-83904770 Msa1131300:three_prime_UTR
ATTTGAAGGAGCTCAAAATG+GGG 0.714952 7_3:-83906490 Msa1131300:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGATTATATTATATGTTT+TGG - chr7_3:83906019-83906038 Msa1131300:intron 10.0%
!! TAAAATTGTAAATGATATAA+AGG + chr7_3:83906997-83907016 None:intergenic 10.0%
!!! TAATCATCAATATTTTTATA+AGG - chr7_3:83907231-83907250 Msa1131300:intron 10.0%
!!! AATCATCAATATTTTTATAA+GGG - chr7_3:83907232-83907251 Msa1131300:intron 10.0%
!! AAATAGAAATAGAAATGAAA+TGG + chr7_3:83905048-83905067 None:intergenic 15.0%
!! TGTAAAGTTTAATATATTTC+AGG + chr7_3:83905686-83905705 None:intergenic 15.0%
!!! TGTTATTTTTATAAGTCTTT+AGG - chr7_3:83906390-83906409 Msa1131300:intron 15.0%
!! TACTGTAAATATTAATTAGA+TGG + chr7_3:83906490-83906509 None:intergenic 15.0%
!! TGTATAAGAAGAAAAATATA+AGG + chr7_3:83906886-83906905 None:intergenic 15.0%
!!! ATTTACAATTTTACAGAATT+CGG - chr7_3:83907004-83907023 Msa1131300:intron 15.0%
!! AAAAATTAACAAGTAAAGAT+AGG + chr7_3:83907339-83907358 None:intergenic 15.0%
!!! ATATCTTATTTTATTATCAC+CGG - chr7_3:83908349-83908368 Msa1131300:intron 15.0%
!! TTAGATATAAATTTCTACTT+AGG + chr7_3:83908391-83908410 None:intergenic 15.0%
!!! TTACTTTCGATTTTTGAAAT+AGG - chr7_3:83905090-83905109 Msa1131300:CDS 20.0%
!! TAATTCATTATTCTAACAAC+AGG + chr7_3:83905643-83905662 None:intergenic 20.0%
!! TTGTTAGAATAATGAATTAC+AGG - chr7_3:83905644-83905663 Msa1131300:intron 20.0%
!! AAGTTTAATATATTTCAGGA+CGG + chr7_3:83905682-83905701 None:intergenic 20.0%
!! TAGTATAAAAAAAAAACCAG+TGG - chr7_3:83905783-83905802 Msa1131300:intron 20.0%
!!! AAAGCAATGCTTTTAAAAAT+CGG - chr7_3:83905819-83905838 Msa1131300:intron 20.0%
!! TATACCAATGTTATGAAAAT+TGG + chr7_3:83906107-83906126 None:intergenic 20.0%
!! ACCATCTTAATCTTAAAAAA+CGG + chr7_3:83906426-83906445 None:intergenic 20.0%
!!! TCATTCCAATTTTGTTTTTT+CGG - chr7_3:83906653-83906672 Msa1131300:CDS 20.0%
!! AACAAGATATAAATGATGAA+AGG + chr7_3:83907530-83907549 None:intergenic 20.0%
!!! TGTGATTTTGTTTTTTGTTT+TGG - chr7_3:83907826-83907845 Msa1131300:intron 20.0%
!! AAAAATGAAATGAAATTCGA+AGG + chr7_3:83908868-83908887 None:intergenic 20.0%
!!! GCTGTTTTAATAAGATATCT+TGG - chr7_3:83905365-83905384 Msa1131300:intron 25.0%
!!! GTTTTGGTTTGTTAGTTTTT+TGG - chr7_3:83906035-83906054 Msa1131300:intron 25.0%
! TTCATAACATTGGTATAAAG+TGG - chr7_3:83906110-83906129 Msa1131300:intron 25.0%
!! CTATTTCGAATGTTCATTTT+TGG - chr7_3:83906155-83906174 Msa1131300:intron 25.0%
! GATAGACAATTATCCAAATT+TGG - chr7_3:83906216-83906235 Msa1131300:intron 25.0%
!! AAATGGATAGCTCAATTTTT+AGG - chr7_3:83906363-83906382 Msa1131300:intron 25.0%
!! AATGGATAGCTCAATTTTTA+GGG - chr7_3:83906364-83906383 Msa1131300:intron 25.0%
! TAAGATTAAGATGGTGTATT+TGG - chr7_3:83906431-83906450 Msa1131300:intron 25.0%
! TGTCTTGAATGTTGTTAATT+TGG - chr7_3:83906604-83906623 Msa1131300:intron 25.0%
!! TTGAATGTTGTTAATTTGGA+TGG - chr7_3:83906608-83906627 Msa1131300:intron 25.0%
!!! CATTCCAATTTTGTTTTTTC+GGG - chr7_3:83906654-83906673 Msa1131300:CDS 25.0%
!!! ATTCCAATTTTGTTTTTTCG+GGG - chr7_3:83906655-83906674 Msa1131300:CDS 25.0%
! TTTCATGAAACAACATGTTT+GGG + chr7_3:83906738-83906757 None:intergenic 25.0%
!! ATCTTTTTAATGTAGCTAGT+CGG - chr7_3:83907053-83907072 Msa1131300:intron 25.0%
!! TTTTCTATGAAACATGAGAA+AGG + chr7_3:83907132-83907151 None:intergenic 25.0%
! ATATCTGAATTCTTGTTCTT+TGG - chr7_3:83907167-83907186 Msa1131300:intron 25.0%
! TAATGAATGTGCAATCAATT+AGG - chr7_3:83907556-83907575 Msa1131300:intron 25.0%
! TTAAAGCATAAACATTGTCT+TGG - chr7_3:83907693-83907712 Msa1131300:intron 25.0%
! TAAAGCATAAACATTGTCTT+GGG - chr7_3:83907694-83907713 Msa1131300:intron 25.0%
! AAATTTATATCTAAACCACG+CGG - chr7_3:83908397-83908416 Msa1131300:CDS 25.0%
!!! TTATGAAGATGTTTTTGTCA+CGG + chr7_3:83908460-83908479 None:intergenic 25.0%
! CACTAGAAGTTTAATTATAG+AGG - chr7_3:83908696-83908715 Msa1131300:CDS 25.0%
CCAATGAAAATTTGAGGATT+GGG + chr7_3:83904641-83904660 None:intergenic 30.0%
ACCAATGAAAATTTGAGGAT+TGG + chr7_3:83904642-83904661 None:intergenic 30.0%
GAACAACCAATGAAAATTTG+AGG + chr7_3:83904647-83904666 None:intergenic 30.0%
ATACTTACTAGAACATGCAT+CGG - chr7_3:83904714-83904733 Msa1131300:three_prime_UTR 30.0%
TTTATTAGAGAATAGATGCG+AGG + chr7_3:83904817-83904836 None:intergenic 30.0%
TTAGAATACGTACCTAAGTT+TGG + chr7_3:83905012-83905031 None:intergenic 30.0%
TATTGATCAGAGTCAGAATA+TGG - chr7_3:83905130-83905149 Msa1131300:CDS 30.0%
TTGACTCAGTTCTATCATAT+AGG - chr7_3:83905226-83905245 Msa1131300:intron 30.0%
TCTATCATATAGGCATGATT+TGG - chr7_3:83905236-83905255 Msa1131300:intron 30.0%
!! TGAACTGATTTGAAAGAGTT+GGG + chr7_3:83905486-83905505 None:intergenic 30.0%
CATAAGTAATATGTGCTCAA+AGG + chr7_3:83905542-83905561 None:intergenic 30.0%
TTCATTATTCTAACAACAGG+AGG + chr7_3:83905640-83905659 None:intergenic 30.0%
AAAAAAAAACCAGTGGTTGA+TGG - chr7_3:83905790-83905809 Msa1131300:intron 30.0%
CAATGTTATGAAAATTGGAC+CGG + chr7_3:83906102-83906121 None:intergenic 30.0%
!! TGTTCCAATTTTAATGTGAC+AGG - chr7_3:83906280-83906299 Msa1131300:intron 30.0%
!! GTTCCAATTTTAATGTGACA+GGG - chr7_3:83906281-83906300 Msa1131300:intron 30.0%
!! TTCCAATTTTAATGTGACAG+GGG - chr7_3:83906282-83906301 Msa1131300:intron 30.0%
!!! GCCGTTTTTTAAGATTAAGA+TGG - chr7_3:83906422-83906441 Msa1131300:intron 30.0%
TAAGAGCAAGAAAAAAAGAC+AGG + chr7_3:83906533-83906552 None:intergenic 30.0%
! ATGTTGTTAATTTGGATGGT+AGG - chr7_3:83906612-83906631 Msa1131300:intron 30.0%
CTTTCATGAAACAACATGTT+TGG + chr7_3:83906739-83906758 None:intergenic 30.0%
TTGTGTTAAGTGAAAGTCAA+AGG + chr7_3:83906770-83906789 None:intergenic 30.0%
! CTGGTAAGCATTGTATTTAT+TGG - chr7_3:83906960-83906979 Msa1131300:intron 30.0%
AAAATGGGGTAATATCCTAA+AGG - chr7_3:83907094-83907113 Msa1131300:intron 30.0%
ATTGATCCATAACCAAGAAT+GGG + chr7_3:83907210-83907229 None:intergenic 30.0%
AATTGATCCATAACCAAGAA+TGG + chr7_3:83907211-83907230 None:intergenic 30.0%
TATGTTTATCTTTGAGCAGT+AGG + chr7_3:83907488-83907507 None:intergenic 30.0%
TACTGCTCAAAGATAAACAT+AGG - chr7_3:83907487-83907506 Msa1131300:intron 30.0%
TCAAAGATAAACATAGGAAG+TGG - chr7_3:83907493-83907512 Msa1131300:intron 30.0%
!! TAAAAAGTAAACTCTGGAAC+TGG + chr7_3:83907754-83907773 None:intergenic 30.0%
GGTTCATAAAAAGTAAACTC+TGG + chr7_3:83907760-83907779 None:intergenic 30.0%
!! ATTTTTGAATGATGGTGACA+AGG - chr7_3:83907912-83907931 Msa1131300:intron 30.0%
! TCAAGTGTATTCAGATCTTT+TGG - chr7_3:83907990-83908009 Msa1131300:intron 30.0%
AAGGTCATAGTAAACCTTAA+AGG - chr7_3:83908030-83908049 Msa1131300:intron 30.0%
!! ATTCTTTTTCACGACCTTTA+AGG + chr7_3:83908047-83908066 None:intergenic 30.0%
AAAATAAGATATCAGCAGAG+TGG + chr7_3:83908341-83908360 None:intergenic 30.0%
!!! AGGCAGTAATTTTTTTTCTC+CGG + chr7_3:83908371-83908390 None:intergenic 30.0%
AATTTATATCTAAACCACGC+GGG - chr7_3:83908398-83908417 Msa1131300:CDS 30.0%
!!! TTCTGCACTTCAGTTTTATT+TGG + chr7_3:83908491-83908510 None:intergenic 30.0%
CATAGTTGAAAACTTCCATA+CGG - chr7_3:83908567-83908586 Msa1131300:intron 30.0%
ATAGTTGAAAACTTCCATAC+GGG - chr7_3:83908568-83908587 Msa1131300:intron 30.0%
GAATACATTATTGAAGAGAG+CGG + chr7_3:83908767-83908786 None:intergenic 30.0%
! CCCAATCCTCAAATTTTCAT+TGG - chr7_3:83904638-83904657 Msa1131300:three_prime_UTR 35.0%
GATTGAAAATTGAGGGAATG+AGG + chr7_3:83904849-83904868 None:intergenic 35.0%
GGGAGAAGATTGAAAATTGA+GGG + chr7_3:83904856-83904875 None:intergenic 35.0%
AGGGAGAAGATTGAAAATTG+AGG + chr7_3:83904857-83904876 None:intergenic 35.0%
ACTCTGATCAATAAGCCTAA+CGG + chr7_3:83905123-83905142 None:intergenic 35.0%
TGAAGATGCTGAACTTGATT+TGG - chr7_3:83905190-83905209 Msa1131300:intron 35.0%
! TAATGAGTATTGCGAATGCA+AGG - chr7_3:83905422-83905441 Msa1131300:intron 35.0%
! AATGAGTATTGCGAATGCAA+GGG - chr7_3:83905423-83905442 Msa1131300:intron 35.0%
!! GGATTGATTGAGCTATTTCT+AGG - chr7_3:83905444-83905463 Msa1131300:intron 35.0%
!! GTGAACTGATTTGAAAGAGT+TGG + chr7_3:83905487-83905506 None:intergenic 35.0%
AATATGTGCTCAAAGGTCAA+TGG + chr7_3:83905535-83905554 None:intergenic 35.0%
ATGACATGACACAATTGCAT+AGG - chr7_3:83905559-83905578 Msa1131300:intron 35.0%
TGCAGATACTATTACCTACA+GGG + chr7_3:83905608-83905627 None:intergenic 35.0%
AAGTTGTGTGTGTGTAAGTA+TGG + chr7_3:83905735-83905754 None:intergenic 35.0%
ACTAAAGTTGAACCACTGAA+CGG + chr7_3:83905878-83905897 None:intergenic 35.0%
! CGGTCCAATTTTCATAACAT+TGG - chr7_3:83906100-83906119 Msa1131300:intron 35.0%
TGGTATAAAGTGGTCATGTA+AGG - chr7_3:83906120-83906139 Msa1131300:intron 35.0%
ACTTGTGGCTACTTAATGAT+TGG + chr7_3:83906184-83906203 None:intergenic 35.0%
ATCATTAAGTAGCCACAAGT+TGG - chr7_3:83906184-83906203 Msa1131300:intron 35.0%
ATCTTCCTATAACCAACTTG+TGG + chr7_3:83906199-83906218 None:intergenic 35.0%
GAAACGCTATACACCAAATT+TGG + chr7_3:83906232-83906251 None:intergenic 35.0%
TAAATATCTGCAGCGTGAAA+TGG - chr7_3:83906346-83906365 Msa1131300:intron 35.0%
!!! CAATTTTGTTTTTTCGGGGT+GGG - chr7_3:83906659-83906678 Msa1131300:CDS 35.0%
!!! AATTTTGTTTTTTCGGGGTG+GGG - chr7_3:83906660-83906679 Msa1131300:CDS 35.0%
ACACAATCAGAAGAATCTCT+TGG - chr7_3:83906784-83906803 Msa1131300:intron 35.0%
AATCAGAAGAATCTCTTGGT+GGG - chr7_3:83906788-83906807 Msa1131300:intron 35.0%
!! ATAAGGAACACTGACTTTCA+AGG + chr7_3:83906869-83906888 None:intergenic 35.0%
! TTTTAATGTAGCTAGTCGGA+TGG - chr7_3:83907057-83907076 Msa1131300:intron 35.0%
GATTTGAAGGAGCTCAAAAT+GGG - chr7_3:83907079-83907098 Msa1131300:intron 35.0%
ATTTGAAGGAGCTCAAAATG+GGG - chr7_3:83907080-83907099 Msa1131300:intron 35.0%
AACATGAGAAAGGATGATCT+AGG + chr7_3:83907122-83907141 None:intergenic 35.0%
AGAATGGGTCAAATCTGATT+AGG + chr7_3:83907195-83907214 None:intergenic 35.0%
AATCAGATTTGACCCATTCT+TGG - chr7_3:83907195-83907214 Msa1131300:intron 35.0%
ATTTGACCCATTCTTGGTTA+TGG - chr7_3:83907201-83907220 Msa1131300:intron 35.0%
GTTATTGCCGTACATTCTTA+CGG - chr7_3:83907281-83907300 Msa1131300:intron 35.0%
TTATTGCCGTACATTCTTAC+GGG - chr7_3:83907282-83907301 Msa1131300:intron 35.0%
TTTACTCTATGTCTCTTGGA+AGG - chr7_3:83907306-83907325 Msa1131300:intron 35.0%
! ATTGTTCACAACTTGCTTCT+TGG - chr7_3:83907409-83907428 Msa1131300:intron 35.0%
TTGCTTCTTGGTTATGAACT+TGG - chr7_3:83907421-83907440 Msa1131300:intron 35.0%
TGCTTCTTGGTTATGAACTT+GGG - chr7_3:83907422-83907441 Msa1131300:intron 35.0%
TTATGAACTTGGGTTCAGTT+AGG - chr7_3:83907432-83907451 Msa1131300:intron 35.0%
AGGATTAAACAAACTCCTCT+TGG + chr7_3:83907468-83907487 None:intergenic 35.0%
ATGTGCAATCAATTAGGACA+AGG - chr7_3:83907562-83907581 Msa1131300:intron 35.0%
! TGCATTTAGAGCAGTTTGTT+TGG - chr7_3:83907585-83907604 Msa1131300:intron 35.0%
! GCACGGAAATTTTTGAATGA+TGG - chr7_3:83907904-83907923 Msa1131300:intron 35.0%
AAGGTCGTGAAAAAGAATTC+AGG - chr7_3:83908049-83908068 Msa1131300:intron 35.0%
AGCATTTGTACCAACAAAGA+AGG - chr7_3:83908171-83908190 Msa1131300:intron 35.0%
AATTGCTAGTACTACAGCAT+AGG + chr7_3:83908198-83908217 None:intergenic 35.0%
TTATTGAAGAGAGCGGTTAA+TGG + chr7_3:83908760-83908779 None:intergenic 35.0%
ATTCATAGAACAACAGCACA+AGG - chr7_3:83908783-83908802 Msa1131300:CDS 35.0%
CTGCATAAGATTATCATCCT+GGG + chr7_3:83908820-83908839 None:intergenic 35.0%
ACTGCATAAGATTATCATCC+TGG + chr7_3:83908821-83908840 None:intergenic 35.0%
! TTTGAGTTTAACGGGAACGA+CGG + chr7_3:83904793-83904812 None:intergenic 40.0%
!! ATGCGAGGCTTTGAGTTTAA+CGG + chr7_3:83904802-83904821 None:intergenic 40.0%
TCATCGTCAGCATCTTTGTT+AGG + chr7_3:83904972-83904991 None:intergenic 40.0%
ATACGTACCTAAGTTTGGAG+AGG + chr7_3:83905007-83905026 None:intergenic 40.0%
GAAATAGGTCGAATACCGTT+AGG - chr7_3:83905105-83905124 Msa1131300:CDS 40.0%
GATCAGAGTCAGAATATGGT+TGG - chr7_3:83905134-83905153 Msa1131300:CDS 40.0%
TGGAGTAGTATCTCTTGATC+AGG - chr7_3:83905154-83905173 Msa1131300:intron 40.0%
TCTTGATCAGGCAATTCGAA+TGG - chr7_3:83905166-83905185 Msa1131300:intron 40.0%
GCAGATACTATTACCTACAG+GGG + chr7_3:83905607-83905626 None:intergenic 40.0%
CTGCAGATACTATTACCTAC+AGG + chr7_3:83905609-83905628 None:intergenic 40.0%
GTAGGTAATAGTATCTGCAG+AGG - chr7_3:83905609-83905628 Msa1131300:intron 40.0%
TTTGTAATGCCATCAACCAC+TGG + chr7_3:83905802-83905821 None:intergenic 40.0%
! AATCGGTTCAGTCATTGAAC+CGG - chr7_3:83905836-83905855 Msa1131300:intron 40.0%
CGGTGAATAAGTGTCTTAAC+CGG + chr7_3:83905858-83905877 None:intergenic 40.0%
!! AGTAGCCACAAGTTGGTTAT+AGG - chr7_3:83906191-83906210 Msa1131300:intron 40.0%
CTCCCCTGTCACATTAAAAT+TGG + chr7_3:83906287-83906306 None:intergenic 40.0%
CCACCCCGAAAAAACAAAAT+TGG + chr7_3:83906661-83906680 None:intergenic 40.0%
!!! CCAATTTTGTTTTTTCGGGG+TGG - chr7_3:83906658-83906677 Msa1131300:CDS 40.0%
CAATCAGAAGAATCTCTTGG+TGG - chr7_3:83906787-83906806 Msa1131300:intron 40.0%
ATCAGAAGAATCTCTTGGTG+GGG - chr7_3:83906789-83906808 Msa1131300:intron 40.0%
GGATTTGAAGGAGCTCAAAA+TGG - chr7_3:83907078-83907097 Msa1131300:intron 40.0%
TATTGCCGTACATTCTTACG+GGG - chr7_3:83907283-83907302 Msa1131300:intron 40.0%
GTAAACCCCGTAAGAATGTA+CGG + chr7_3:83907291-83907310 None:intergenic 40.0%
ACATAGGAAGTGGCAAATGT+CGG - chr7_3:83907503-83907522 Msa1131300:intron 40.0%
! TTGCTGCTTAACGATAAACG+TGG - chr7_3:83907610-83907629 Msa1131300:intron 40.0%
! TGCTGCTTAACGATAAACGT+GGG - chr7_3:83907611-83907630 Msa1131300:intron 40.0%
CTACAACTCAAAACTAACGC+TGG + chr7_3:83907781-83907800 None:intergenic 40.0%
! TCTTTTGGATCAATTGCTGC+AGG - chr7_3:83908005-83908024 Msa1131300:intron 40.0%
! AGACGTTTTCAGAACGATGT+TGG - chr7_3:83908093-83908112 Msa1131300:intron 40.0%
! GACGTTTTCAGAACGATGTT+GGG - chr7_3:83908094-83908113 Msa1131300:intron 40.0%
! TTTTCAGAACGATGTTGGGA+AGG - chr7_3:83908098-83908117 Msa1131300:intron 40.0%
TCAACCAGAACATAGCAAAG+CGG + chr7_3:83908133-83908152 None:intergenic 40.0%
GTGCTTTACAGATACTCTCT+TGG - chr7_3:83908230-83908249 Msa1131300:intron 40.0%
!! GCTTTCTTTGGTGTTTCTTG+AGG + chr7_3:83908515-83908534 None:intergenic 40.0%
TCATCTTCTGCAGCTTTCTT+TGG + chr7_3:83908527-83908546 None:intergenic 40.0%
ACAGAGCAATATCAGTTGCA+AGG + chr7_3:83908615-83908634 None:intergenic 40.0%
CAACTGATATTGCTCTGTTG+TGG - chr7_3:83908617-83908636 Msa1131300:CDS 40.0%
CTTTAGCGTTCCAATAGACA+AGG + chr7_3:83908725-83908744 None:intergenic 40.0%
GAAAATTTGAGGATTGGGCC+TGG + chr7_3:83904636-83904655 None:intergenic 45.0%
!! GCGTTGGTTTACACTTTCCA+CGG + chr7_3:83904747-83904766 None:intergenic 45.0%
! GAAAGTGTAAACCAACGCCA+TGG - chr7_3:83904749-83904768 Msa1131300:three_prime_UTR 45.0%
!! TGCGAGGCTTTGAGTTTAAC+GGG + chr7_3:83904801-83904820 None:intergenic 45.0%
TGGGAAGGAAGAGTGAATGA+GGG + chr7_3:83904876-83904895 None:intergenic 45.0%
GAGGTTAACACCGTAACGAA+CGG + chr7_3:83904904-83904923 None:intergenic 45.0%
TCAGCATCTTTGTTAGGAGG+AGG + chr7_3:83904966-83904985 None:intergenic 45.0%
TCGTCAGCATCTTTGTTAGG+AGG + chr7_3:83904969-83904988 None:intergenic 45.0%
GACACTTATTCACCGTTCAG+TGG - chr7_3:83905863-83905882 Msa1131300:intron 45.0%
TTGATTAGACTCCTCCTGAC+TGG - chr7_3:83906064-83906083 Msa1131300:intron 45.0%
!! AAAATTGGACCGGCTGGTTT+GGG + chr7_3:83906092-83906111 None:intergenic 45.0%
GTTATGAAAATTGGACCGGC+TGG + chr7_3:83906098-83906117 None:intergenic 45.0%
!! TCTAGCCTTATGCAGCTACT+TGG - chr7_3:83906257-83906276 Msa1131300:intron 45.0%
GAACACCAAGTAGCTGCATA+AGG + chr7_3:83906265-83906284 None:intergenic 45.0%
TTTAATGTGACAGGGGAGAG+TGG - chr7_3:83906289-83906308 Msa1131300:intron 45.0%
! GGTAGTAAAGGTGGGAGTAT+CGG - chr7_3:83906310-83906329 Msa1131300:intron 45.0%
GAGTAAGTATGCAAGTGAGC+AGG + chr7_3:83906841-83906860 None:intergenic 45.0%
CTCACTTGCATACTTACTCG+TGG - chr7_3:83906842-83906861 Msa1131300:intron 45.0%
! GATCAGCAGAAGAAAAGTGC+TGG - chr7_3:83906941-83906960 Msa1131300:intron 45.0%
! AGCTAGTCGGATGGATTTGA+AGG - chr7_3:83907066-83907085 Msa1131300:intron 45.0%
AGGATGATCTAGGCTCCTTT+AGG + chr7_3:83907112-83907131 None:intergenic 45.0%
GGGGTTTACTCTATGTCTCT+TGG - chr7_3:83907302-83907321 Msa1131300:intron 45.0%
TTAGGAAACGACACACCAAG+AGG - chr7_3:83907450-83907469 Msa1131300:intron 45.0%
CATAGGAAGTGGCAAATGTC+GGG - chr7_3:83907504-83907523 Msa1131300:intron 45.0%
TGCTTAACGATAAACGTGGG+AGG - chr7_3:83907614-83907633 Msa1131300:intron 45.0%
CTGTACGTTTGAAAGCTGCA+CGG - chr7_3:83907887-83907906 Msa1131300:intron 45.0%
GGATCAATTGCTGCAGGTTA+AGG - chr7_3:83908011-83908030 Msa1131300:intron 45.0%
CAGCATAGGACCTTCTTTGT+TGG + chr7_3:83908184-83908203 None:intergenic 45.0%
TCATTTGCAGCTTGCAACAG+AGG - chr7_3:83908421-83908440 Msa1131300:CDS 45.0%
AGCTGCAGAAGATGAAGTCT+CGG - chr7_3:83908532-83908551 Msa1131300:intron 45.0%
TCGACAACTAGAATCCCGTA+TGG + chr7_3:83908585-83908604 None:intergenic 45.0%
! TACGGGATTCTAGTTGTCGA+AGG - chr7_3:83908585-83908604 Msa1131300:CDS 45.0%
! ATAGAGGCAGCCTTGTCTAT+TGG - chr7_3:83908712-83908731 Msa1131300:CDS 45.0%
ATTGGAACGCTAAAGCCTGA+AGG - chr7_3:83908730-83908749 Msa1131300:CDS 45.0%
TTGGAACGCTAAAGCCTGAA+GGG - chr7_3:83908731-83908750 Msa1131300:CDS 45.0%
GTGGGAAGGAAGAGTGAATG+AGG + chr7_3:83904877-83904896 None:intergenic 50.0%
CTCTCGACCTCTCCAAACTT+AGG - chr7_3:83904997-83905016 Msa1131300:three_prime_UTR 50.0%
TTCCACTCTCTTTCCCCTGT+AGG - chr7_3:83905591-83905610 Msa1131300:intron 50.0%
TACCTACAGGGGAAAGAGAG+TGG + chr7_3:83905596-83905615 None:intergenic 50.0%
! GAAAATTGGACCGGCTGGTT+TGG + chr7_3:83906093-83906112 None:intergenic 50.0%
ACAGGGGAGAGTGGTAGTAA+AGG - chr7_3:83906298-83906317 Msa1131300:intron 50.0%
GGGAGAGTGGTAGTAAAGGT+GGG - chr7_3:83906302-83906321 Msa1131300:intron 50.0%
!! GATGCCGCTTTGCTATGTTC+TGG - chr7_3:83908126-83908145 Msa1131300:intron 50.0%
TTTGCAGCTTGCAACAGAGG+AGG - chr7_3:83908424-83908443 Msa1131300:CDS 50.0%
GCGGTTAATGGAATCCCTTC+AGG + chr7_3:83908748-83908767 None:intergenic 50.0%
CATGCATCGGAGTTGAACCG+TGG - chr7_3:83904727-83904746 Msa1131300:three_prime_UTR 55.0%
GTGTAAACCAACGCCATGGC+TGG - chr7_3:83904753-83904772 Msa1131300:three_prime_UTR 55.0%
TTTAACGGGAACGACGGTGG+TGG + chr7_3:83904787-83904806 None:intergenic 55.0%
GAGTTTAACGGGAACGACGG+TGG + chr7_3:83904790-83904809 None:intergenic 55.0%
TAACGAACGGTTGCGTGGGA+AGG + chr7_3:83904891-83904910 None:intergenic 55.0%
TCCCACGCAACCGTTCGTTA+CGG - chr7_3:83904891-83904910 Msa1131300:three_prime_UTR 55.0%
ACCGTAACGAACGGTTGCGT+GGG + chr7_3:83904895-83904914 None:intergenic 55.0%
GGGGAGAGTGGTAGTAAAGG+TGG - chr7_3:83906301-83906320 Msa1131300:intron 55.0%
ACAAGGCTGATCGATCACCC+AGG - chr7_3:83908800-83908819 Msa1131300:CDS 55.0%
GGTAATGCCAGCCATGGCGT+TGG + chr7_3:83904763-83904782 None:intergenic 60.0%
! GGTGGTGGTAATGCCAGCCA+TGG + chr7_3:83904769-83904788 None:intergenic 60.0%
CACCGTAACGAACGGTTGCG+TGG + chr7_3:83904896-83904915 None:intergenic 60.0%
AACCTCCGTCCTTCCGCCTA+CGG - chr7_3:83904918-83904937 Msa1131300:three_prime_UTR 60.0%
! TGGTTTGGGAGCCAGTCAGG+AGG + chr7_3:83906078-83906097 None:intergenic 60.0%
! TGACTGGCTCCCAAACCAGC+CGG - chr7_3:83906080-83906099 Msa1131300:intron 60.0%
CAAGCTGCAAATGACCCGCG+TGG + chr7_3:83908415-83908434 None:intergenic 60.0%
! AACGGGAACGACGGTGGTGG+TGG + chr7_3:83904784-83904803 None:intergenic 65.0%
GAAGTTGCCACCGCCACCGT+AGG + chr7_3:83904937-83904956 None:intergenic 65.0%
!! GGCTGGTTTGGGAGCCAGTC+AGG + chr7_3:83906081-83906100 None:intergenic 65.0%
CACCGTAGGCGGAAGGACGG+AGG + chr7_3:83904923-83904942 None:intergenic 70.0%
CTCCGTCCTTCCGCCTACGG+TGG - chr7_3:83904921-83904940 Msa1131300:three_prime_UTR 70.0%
CGCCACCGTAGGCGGAAGGA+CGG + chr7_3:83904926-83904945 None:intergenic 70.0%
CGTCCTTCCGCCTACGGTGG+CGG - chr7_3:83904924-83904943 Msa1131300:three_prime_UTR 70.0%
GTTGCCACCGCCACCGTAGG+CGG + chr7_3:83904934-83904953 None:intergenic 70.0%
CCACCGCCACCGTAGGCGGA+AGG + chr7_3:83904930-83904949 None:intergenic 75.0%
! CCTTCCGCCTACGGTGGCGG+TGG - chr7_3:83904927-83904946 Msa1131300:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 83904619 83908973 83904619 ID=Msa1131300;Name=Msa1131300
chr7_3 mRNA 83904619 83908973 83904619 ID=Msa1131300-mRNA-1;Parent=Msa1131300;Name=Msa1131300-mRNA-1;_AED=0.19;_eAED=0.19;_QI=149|1|1|1|1|1|8|402|266
chr7_3 exon 83904619 83905161 83904619 ID=Msa1131300-mRNA-1:exon:24965;Parent=Msa1131300-mRNA-1
chr7_3 exon 83905473 83905565 83905473 ID=Msa1131300-mRNA-1:exon:24964;Parent=Msa1131300-mRNA-1
chr7_3 exon 83905659 83905731 83905659 ID=Msa1131300-mRNA-1:exon:24963;Parent=Msa1131300-mRNA-1
chr7_3 exon 83906491 83906524 83906491 ID=Msa1131300-mRNA-1:exon:24962;Parent=Msa1131300-mRNA-1
chr7_3 exon 83906630 83906685 83906630 ID=Msa1131300-mRNA-1:exon:24961;Parent=Msa1131300-mRNA-1
chr7_3 exon 83907927 83907979 83907927 ID=Msa1131300-mRNA-1:exon:24960;Parent=Msa1131300-mRNA-1
chr7_3 exon 83908381 83908480 83908381 ID=Msa1131300-mRNA-1:exon:24959;Parent=Msa1131300-mRNA-1
chr7_3 exon 83908574 83908973 83908574 ID=Msa1131300-mRNA-1:exon:24958;Parent=Msa1131300-mRNA-1
chr7_3 five_prime_UTR 83908825 83908973 83908825 ID=Msa1131300-mRNA-1:five_prime_utr;Parent=Msa1131300-mRNA-1
chr7_3 CDS 83908574 83908824 83908574 ID=Msa1131300-mRNA-1:cds;Parent=Msa1131300-mRNA-1
chr7_3 CDS 83908381 83908480 83908381 ID=Msa1131300-mRNA-1:cds;Parent=Msa1131300-mRNA-1
chr7_3 CDS 83907927 83907979 83907927 ID=Msa1131300-mRNA-1:cds;Parent=Msa1131300-mRNA-1
chr7_3 CDS 83906630 83906685 83906630 ID=Msa1131300-mRNA-1:cds;Parent=Msa1131300-mRNA-1
chr7_3 CDS 83906491 83906524 83906491 ID=Msa1131300-mRNA-1:cds;Parent=Msa1131300-mRNA-1
chr7_3 CDS 83905659 83905731 83905659 ID=Msa1131300-mRNA-1:cds;Parent=Msa1131300-mRNA-1
chr7_3 CDS 83905473 83905565 83905473 ID=Msa1131300-mRNA-1:cds;Parent=Msa1131300-mRNA-1
chr7_3 CDS 83905021 83905161 83905021 ID=Msa1131300-mRNA-1:cds;Parent=Msa1131300-mRNA-1
chr7_3 three_prime_UTR 83904619 83905020 83904619 ID=Msa1131300-mRNA-1:three_prime_utr;Parent=Msa1131300-mRNA-1
Gene Sequence

>Msa1131300

ATGGCTGGCATTACCACCACCACCGTCGTTCCCGTTAAACTCAAAGCCTCGCATCTATTCTCTAATAAACTCTCTATTCCTCATTCCCTCAATTTTCAATCTTCTCCCTCATTCACTCTTCCTTCCCACGCAACCGTTCGTTACGGTGTTAACCTCCGTCCTTCCGCCTACGGTGGCGGTGGCAACTTCAGAAGACCTCCTCCTAACAAAGATGCTGACGATGAACAAGCTCTCGACCTCTCCAAACTTAGGTCGAATACCGTTAGGCTTATTGATCAGAGTCAGAATATGGTTGGAGTAGTATCTCTTGATCAGGCAATTCGAATGGCTGAAGATGCTGAACTTGATTTGGTAATAGTATCTGCAGAGGCAGATCCTCCTGTTGTTAGAATAATGAATTACAGTAAATATAGATATGAACTGCAGAAGAAGAAAAGAGATCAGCAGAAGAAAAGTGCTGCTAGTCGGATGGATTTGAAGGAGCTCAAAATGGGATACAACATAGATCAACATGATTATTCTGTACGTTTGAAAGCTGCACGGAAATTTTTGAATGATGGTGACAAGGTTAAGGTCATAGTAAACCTTAAAGGTCGTGAAAAAGAATTCAGGAATAATGCTATTGAGCTTATTAGACGTTTTCAGAACGATGTTGGGAAGCTTGCAACAGAGGAGGCTAAAAACTTCCGTGACAAAAACATCTTCATAACTTTGATTCCAAATAAAACTGAAGTGCAGAAACCTCAAGAAACACCAAAGAAAGCTGCAGAAGATGAAGTCTCGGTCAGTGTCGAAGCATAG

Protein sequence

>Msa1131300

MAGITTTTVVPVKLKASHLFSNKLSIPHSLNFQSSPSFTLPSHATVRYGVNLRPSAYGGGGNFRRPPPNKDADDEQALDLSKLRSNTVRLIDQSQNMVGVVSLDQAIRMAEDAELDLVIVSAEADPPVVRIMNYSKYRYELQKKKRDQQKKSAASRMDLKELKMGYNIDQHDYSVRLKAARKFLNDGDKVKVIVNLKGREKEFRNNAIELIRRFQNDVGKLATEEAKNFRDKNIFITLIPNKTEVQKPQETPKKAAEDEVSVSVEA*