AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1154020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1154020 MtrunA17_Chr7g0244891 90.129 233 18 1 1 228 1 233 7.40e-139 388
Msa1154020 MtrunA17_Chr3g0121231 26.984 189 124 4 44 228 62 240 1.08e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1154020 AT3G08740.1 68.559 229 69 3 2 228 9 236 2.69e-111 319
Msa1154020 AT4G26310.1 27.941 204 136 5 29 227 58 255 1.35e-19 84.7
Msa1154020 AT4G26310.2 27.624 181 120 5 29 204 58 232 1.44e-13 68.6

Find 67 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTGTTCAATTTGTCTTCA+TGG 0.273598 7_4:+41290052 Msa1154020:CDS
AGATTTGCGGAGAGAGAAAT+AGG 0.307200 7_4:-41287080 None:intergenic
ACCTTAAGCTTGACTGTTAT+AGG 0.325039 7_4:-41291098 None:intergenic
CGATGTGGATCCGGGACTTA+AGG 0.328589 7_4:+41291124 Msa1154020:CDS
AAGCTTAAGAATCATCTTAC+TGG 0.330470 7_4:+41287460 Msa1154020:CDS
GGTTCACCTTGGCGTGTCTT+AGG 0.336234 7_4:+41287297 Msa1154020:CDS
TGGACTGCAATTTGCTGTTA+TGG 0.343872 7_4:+41290363 Msa1154020:CDS
CTGAGAAAACGGGGATTAGA+AGG 0.346976 7_4:-41287139 None:intergenic
CCTTAAGCTTGACTGTTATA+GGG 0.349152 7_4:-41291097 None:intergenic
GCACCAGTGTCGAGAGTTGC+TGG 0.378675 7_4:-41291683 None:intergenic
GGTTTCTAGTCTAGAGGATA+AGG 0.406130 7_4:-41286984 None:intergenic
TCAATTTGTCTTCATGGACT+TGG 0.409456 7_4:+41290058 Msa1154020:CDS
TAAGGTAGTCGATGTGGATC+CGG 0.417488 7_4:+41291115 Msa1154020:CDS
AGGGGTGCGAATAGGAAAGT+TGG 0.419595 7_4:-41287119 None:intergenic
CCCTATAACAGTCAAGCTTA+AGG 0.429085 7_4:+41291097 Msa1154020:CDS
AAATATAGGCGAGGAAATAC+TGG 0.432665 7_4:+41291730 Msa1154020:CDS
GGTACTAATATCGAAGTTGA+TGG 0.439639 7_4:+41287276 Msa1154020:CDS
ATACTGGTTGATACAAGATC+TGG 0.444124 7_4:+41291746 Msa1154020:CDS
CGTCTGGATGAATCAGAAGT+TGG 0.444955 7_4:+41290311 Msa1154020:CDS
GGATTAGAAGGGGTGCGAAT+AGG 0.455811 7_4:-41287127 None:intergenic
TCTAGTAATGACATTAAAGT+TGG 0.456626 7_4:+41287255 Msa1154020:CDS
GATGTGGATCCGGGACTTAA+GGG 0.461872 7_4:+41291125 Msa1154020:CDS
GACCTTCAGAGCTGGAAGTT+CGG 0.469297 7_4:+41287498 Msa1154020:CDS
GTGGGGCTTACTGAGAAAAC+GGG 0.474683 7_4:-41287149 None:intergenic
AGTGGGGCTTACTGAGAAAA+CGG 0.475773 7_4:-41287150 None:intergenic
GTCCCGCTCTTTGTAAATAT+AGG 0.478856 7_4:+41291716 Msa1154020:CDS
AAGGTAGTCGATGTGGATCC+GGG 0.490283 7_4:+41291116 Msa1154020:CDS
GTCTGGATGAATCAGAAGTT+GGG 0.495506 7_4:+41290312 Msa1154020:CDS
CTTCATGTGAAACCTGGAAA+AGG 0.505634 7_4:+41287418 Msa1154020:CDS
CGCCTATATTTACAAAGAGC+GGG 0.509532 7_4:-41291718 None:intergenic
TGCAATTTGCTGTTATGGAA+TGG 0.524366 7_4:+41290368 Msa1154020:CDS
TACATACGAGGAGACTCGTC+TGG 0.525138 7_4:+41290295 Msa1154020:CDS
ATAGGAGAGATTGAGCTTCA+AGG 0.529166 7_4:-41287062 None:intergenic
GGTATGAAGAAGAAGATTTG+CGG 0.536049 7_4:-41287093 None:intergenic
AAAACAAAGTGGCTGAAAGA+AGG 0.539823 7_4:+41290338 Msa1154020:CDS
GAGTTTCTTCATGTGAAACC+TGG 0.542138 7_4:+41287412 Msa1154020:intron
GTTTCTAGTCTAGAGGATAA+GGG 0.555035 7_4:-41286983 None:intergenic
AAACAGTTCACATATAAAGA+TGG 0.561471 7_4:+41290032 Msa1154020:CDS
TACCGAACTTCCAGCTCTGA+AGG 0.565488 7_4:-41287500 None:intergenic
GTTGAAAAGACCTTCAGAGC+TGG 0.566337 7_4:+41287490 Msa1154020:CDS
CGACAACACAACATGATAGC+GGG 0.571198 7_4:+41287031 Msa1154020:exon
TGAGAAAACGGGGATTAGAA+GGG 0.572553 7_4:-41287138 None:intergenic
AAAGTGGCTGAAAGAAGGAA+TGG 0.581341 7_4:+41290343 Msa1154020:CDS
TCGCCTATATTTACAAAGAG+CGG 0.586804 7_4:-41291719 None:intergenic
GGCATTATTCATCATGATTG+TGG 0.587553 7_4:+41291963 Msa1154020:three_prime_UTR
GCTGTGTCACCCTTAAGTCC+CGG 0.588592 7_4:-41291134 None:intergenic
TACTGGTTGATACAAGATCT+GGG 0.592937 7_4:+41291747 Msa1154020:CDS
TTGATATGAAATCTTAAGCA+CGG 0.595292 7_4:-41291781 None:intergenic
GGTGCGAATAGGAAAGTTGG+AGG 0.597541 7_4:-41287116 None:intergenic
TGCGAATAGGAAAGTTGGAG+GGG 0.600775 7_4:-41287114 None:intergenic
AAGCCAGCAACTCTCGACAC+TGG 0.613570 7_4:+41291680 Msa1154020:CDS
TAACTTTAGTTGCGAAACTG+AGG 0.615321 7_4:+41291933 Msa1154020:three_prime_UTR
GTGCGAATAGGAAAGTTGGA+GGG 0.615958 7_4:-41287115 None:intergenic
ATCATGATGAATAATGCCGC+AGG 0.616116 7_4:-41291958 None:intergenic
TGATGAAGCTGATATAGTCA+AGG 0.622649 7_4:+41290004 Msa1154020:CDS
CAAGCTTAAGGTAGTCGATG+TGG 0.633779 7_4:+41291109 Msa1154020:CDS
TTGCGAAACTGAGGCTCCTG+CGG 0.644437 7_4:+41291942 Msa1154020:three_prime_UTR
GAGAAAACGGGGATTAGAAG+GGG 0.646810 7_4:-41287137 None:intergenic
GTATTACCTAAGACACGCCA+AGG 0.651100 7_4:-41287303 None:intergenic
TCGAAGTTGATGGTTCACCT+TGG 0.655283 7_4:+41287286 Msa1154020:CDS
GAAAAGGTGCTGCATTTGTG+AGG 0.657241 7_4:+41287434 Msa1154020:CDS
CTTAAGGGTGACACAGCCCA+AGG 0.664333 7_4:+41291140 Msa1154020:CDS
ACGACAACACAACATGATAG+CGG 0.677593 7_4:+41287030 Msa1154020:exon
GCTCTTTGTAAATATAGGCG+AGG 0.683752 7_4:+41291721 Msa1154020:CDS
AAGTTGGGAACAAAACAAAG+TGG 0.698694 7_4:+41290327 Msa1154020:CDS
ATACTATCAGAGTACATACG+AGG 0.738653 7_4:+41290283 Msa1154020:intron
TGGGGCTTACTGAGAAAACG+GGG 0.761195 7_4:-41287148 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTATTAGATTCTTTT+TGG + chr7_4:41287774-41287793 Msa1154020:intron 10.0%
!!! ATTTTTATTAGATTCTTTTT+GGG + chr7_4:41287775-41287794 Msa1154020:intron 10.0%
!!! ATTTTGAATTAAATTGATTT+AGG + chr7_4:41288002-41288021 Msa1154020:intron 10.0%
!!! TTTTGAATTAAATTGATTTA+GGG + chr7_4:41288003-41288022 Msa1154020:intron 10.0%
!! AATTAGATTATGTATAATTA+AGG - chr7_4:41290104-41290123 None:intergenic 10.0%
!! TAACAAAGTAAAAAATTAAA+GGG - chr7_4:41290258-41290277 None:intergenic 10.0%
!! TTAACAAAGTAAAAAATTAA+AGG - chr7_4:41290259-41290278 None:intergenic 10.0%
!! TTAGTAAAATAAAAAACTAT+GGG - chr7_4:41290653-41290672 None:intergenic 10.0%
!! ATTAGTAAAATAAAAAACTA+TGG - chr7_4:41290654-41290673 None:intergenic 10.0%
!! ATAAATATAAAAGCTAAAAA+AGG + chr7_4:41291378-41291397 Msa1154020:intron 10.0%
!! TTCTTAGTAGAAAAAAAAAA+GGG - chr7_4:41287850-41287869 None:intergenic 15.0%
!! TTTCTTAGTAGAAAAAAAAA+AGG - chr7_4:41287851-41287870 None:intergenic 15.0%
!!! TTACAAAACAGTAATTTTTT+AGG - chr7_4:41289680-41289699 None:intergenic 15.0%
!! TAATAAATTATGAGATGAAA+AGG - chr7_4:41290402-41290421 None:intergenic 15.0%
!! AAATAAAATTACAACAAGAA+CGG - chr7_4:41290956-41290975 None:intergenic 15.0%
!! TTAAACATAAAATTTAAGGA+TGG + chr7_4:41290975-41290994 Msa1154020:intron 15.0%
!!! AATTTTATTTAAGCTTCAAT+AGG - chr7_4:41291030-41291049 None:intergenic 15.0%
!! ATAATGAGTAGTGATTAAAA+TGG + chr7_4:41287364-41287383 Msa1154020:intron 20.0%
!! AAAAGATTTCAGAAAAACTA+GGG - chr7_4:41287531-41287550 None:intergenic 20.0%
!! AAAAAGATTTCAGAAAAACT+AGG - chr7_4:41287532-41287551 None:intergenic 20.0%
!!! ATAGAAAATAATCTTTTTGC+TGG + chr7_4:41288182-41288201 Msa1154020:intron 20.0%
!! TTCAATGTAATTATATGTGT+CGG + chr7_4:41289102-41289121 Msa1154020:intron 20.0%
!! CATCATTTCTTGAAAAATAT+AGG + chr7_4:41289230-41289249 Msa1154020:intron 20.0%
!! ATATAGGATACAATATGTTT+AGG + chr7_4:41289246-41289265 Msa1154020:intron 20.0%
!! CAATTAATAAGTAGGAATAA+GGG + chr7_4:41289359-41289378 Msa1154020:intron 20.0%
!! AAGTAAAAAATTAAAGGGTA+TGG - chr7_4:41290253-41290272 None:intergenic 20.0%
!! ATATTCATTATCATCAATAC+TGG - chr7_4:41290460-41290479 None:intergenic 20.0%
!!! AGTATTGATGATAATGAATA+TGG + chr7_4:41290459-41290478 Msa1154020:intron 20.0%
!!! GTATTGATGATAATGAATAT+GGG + chr7_4:41290460-41290479 Msa1154020:intron 20.0%
!! TGTATTCTTGTAATAGTTAA+TGG + chr7_4:41290829-41290848 Msa1154020:intron 20.0%
!! AAATTAGCAGTATAAGAAAA+TGG - chr7_4:41291171-41291190 None:intergenic 20.0%
!! ACTAAAATGATAAAGTTATC+TGG + chr7_4:41291256-41291275 Msa1154020:intron 20.0%
!! AATTGTGAAATATGCATTTA+GGG - chr7_4:41291293-41291312 None:intergenic 20.0%
!! AAATTGTGAAATATGCATTT+AGG - chr7_4:41291294-41291313 None:intergenic 20.0%
!! TAAATGCATATTTCACAATT+TGG + chr7_4:41291293-41291312 Msa1154020:intron 20.0%
!! AATTTGGCATTAAAAAAACA+AGG + chr7_4:41291309-41291328 Msa1154020:intron 20.0%
!! ATTTGGCATTAAAAAAACAA+GGG + chr7_4:41291310-41291329 Msa1154020:intron 20.0%
!!! AGATTTTATCAGCTAATAAT+TGG + chr7_4:41291351-41291370 Msa1154020:intron 20.0%
! TTAGTGAAAATATGAAAGTG+GGG - chr7_4:41287169-41287188 None:intergenic 25.0%
! GTTAGTGAAAATATGAAAGT+GGG - chr7_4:41287170-41287189 None:intergenic 25.0%
! TCTAGTAATGACATTAAAGT+TGG + chr7_4:41287255-41287274 Msa1154020:CDS 25.0%
! ATATTCCTTCTTACAAATCA+TGG - chr7_4:41287697-41287716 None:intergenic 25.0%
! GAATTTACTATGAAATTGCT+TGG + chr7_4:41287717-41287736 Msa1154020:intron 25.0%
!! TGAAGTCAATTTGATGATTA+AGG + chr7_4:41287750-41287769 Msa1154020:intron 25.0%
!!! ATTAGATTCTTTTTGGGAAT+AGG + chr7_4:41287781-41287800 Msa1154020:intron 25.0%
!!! TTAGATTCTTTTTGGGAATA+GGG + chr7_4:41287782-41287801 Msa1154020:intron 25.0%
! CTGGTATTTATATAGCAAAA+AGG - chr7_4:41288099-41288118 None:intergenic 25.0%
!!! TAGTTTTTTACAAAGCAAGA+GGG - chr7_4:41288162-41288181 None:intergenic 25.0%
!!! TTAGTTTTTTACAAAGCAAG+AGG - chr7_4:41288163-41288182 None:intergenic 25.0%
!! AAAATAATCTTTTTGCTGGT+GGG + chr7_4:41288186-41288205 Msa1154020:intron 25.0%
!! TTAGTGAAAATAGAGGTTTT+TGG - chr7_4:41288446-41288465 None:intergenic 25.0%
!! TCATCTTTTAGTGAAAATAG+AGG - chr7_4:41288453-41288472 None:intergenic 25.0%
!! TTAGCAAGCTTTAGTAATAT+AGG + chr7_4:41288649-41288668 Msa1154020:intron 25.0%
!! AATTCTAATTTGTGAATGTG+TGG - chr7_4:41288689-41288708 None:intergenic 25.0%
! CATCATACTTGTATAACAAA+CGG - chr7_4:41288901-41288920 None:intergenic 25.0%
! TCTAAAAAATTTAGCTGTGT+CGG - chr7_4:41289071-41289090 None:intergenic 25.0%
! AAGTGATGAAAGTTTGAATA+TGG + chr7_4:41289297-41289316 Msa1154020:intron 25.0%
! AGTGATGAAAGTTTGAATAT+GGG + chr7_4:41289298-41289317 Msa1154020:intron 25.0%
! GCAATTAATAAGTAGGAATA+AGG + chr7_4:41289358-41289377 Msa1154020:intron 25.0%
! ATTTGTCACAATTAATGAGT+GGG + chr7_4:41289421-41289440 Msa1154020:intron 25.0%
! TTCAACATAAATTATGTACC+TGG + chr7_4:41289454-41289473 Msa1154020:intron 25.0%
! TCAACATAAATTATGTACCT+GGG + chr7_4:41289455-41289474 Msa1154020:intron 25.0%
! TCAAAAAGACAAATTCTTTC+GGG - chr7_4:41289724-41289743 None:intergenic 25.0%
! CTCAAAAAGACAAATTCTTT+CGG - chr7_4:41289725-41289744 None:intergenic 25.0%
!! TGTTGCTTCTAATTTCTTAT+TGG + chr7_4:41289930-41289949 Msa1154020:intron 25.0%
! GTTGCTTCTAATTTCTTATT+GGG + chr7_4:41289931-41289950 Msa1154020:intron 25.0%
! AAACAGTTCACATATAAAGA+TGG + chr7_4:41290032-41290051 Msa1154020:CDS 25.0%
! AATTGTTGGAATAGAGAATT+TGG - chr7_4:41290216-41290235 None:intergenic 25.0%
! ATTGTTATACGAGTAAATCA+GGG + chr7_4:41290540-41290559 Msa1154020:intron 25.0%
!! AACTATGAATCAATGCTTTT+GGG - chr7_4:41290593-41290612 None:intergenic 25.0%
!! TACTAATCTGAAATGTTGAA+TGG + chr7_4:41290667-41290686 Msa1154020:intron 25.0%
!!! ACAGTTTTATATACATGCTT+TGG + chr7_4:41290691-41290710 Msa1154020:intron 25.0%
!!! CAGTTTTATATACATGCTTT+GGG + chr7_4:41290692-41290711 Msa1154020:intron 25.0%
!!! AGTTTTATATACATGCTTTG+GGG + chr7_4:41290693-41290712 Msa1154020:intron 25.0%
!! ACTTGTCTGTTTATATTTTC+AGG + chr7_4:41291058-41291077 Msa1154020:intron 25.0%
! TGACATTCAATATATCTAAG+AGG - chr7_4:41291517-41291536 None:intergenic 25.0%
! TTGATATGAAATCTTAAGCA+CGG - chr7_4:41291784-41291803 None:intergenic 25.0%
!!! AATTTTTTTGCAGTCTTCAA+TGG + chr7_4:41292011-41292030 Msa1154020:three_prime_UTR 25.0%
!! AAAAATGGTTTCTAGTCTAG+AGG - chr7_4:41286993-41287012 None:intergenic 30.0%
! GTTTTCTTACTGCAGAAAAA+TGG - chr7_4:41287008-41287027 None:intergenic 30.0%
GGTTAGTGAAAATATGAAAG+TGG - chr7_4:41287171-41287190 None:intergenic 30.0%
GAGATTAGTGGAATTAAGAA+GGG - chr7_4:41287207-41287226 None:intergenic 30.0%
AGAGATTAGTGGAATTAAGA+AGG - chr7_4:41287208-41287227 None:intergenic 30.0%
GAAAACAACAAAGAGATTAG+TGG - chr7_4:41287219-41287238 None:intergenic 30.0%
AAGCTTAAGAATCATCTTAC+TGG + chr7_4:41287460-41287479 Msa1154020:CDS 30.0%
! TTCTTTTTACTGTGTTGCAT+TGG + chr7_4:41287550-41287569 Msa1154020:intron 30.0%
! CATTGGTTACTAATAGATGA+AGG + chr7_4:41287567-41287586 Msa1154020:intron 30.0%
GAATGTTAAGAATCTCACAT+CGG + chr7_4:41287589-41287608 Msa1154020:intron 30.0%
AGTCTGACAATGTTTATAAG+TGG + chr7_4:41287621-41287640 Msa1154020:intron 30.0%
GTCTGACAATGTTTATAAGT+GGG + chr7_4:41287622-41287641 Msa1154020:intron 30.0%
!! TAGATTCTTTTTGGGAATAG+GGG + chr7_4:41287783-41287802 Msa1154020:intron 30.0%
GAAAAAACATGATTGAGTGT+CGG + chr7_4:41287871-41287890 Msa1154020:intron 30.0%
! TATTATTCAATTGCGGATTG+TGG + chr7_4:41287894-41287913 Msa1154020:intron 30.0%
ACACTATAGGATAGCAAAAT+TGG - chr7_4:41287936-41287955 None:intergenic 30.0%
!!! CCTCTCTCAAAGTTTTATTT+AGG - chr7_4:41288050-41288069 None:intergenic 30.0%
! CCTAAATAAAACTTTGAGAG+AGG + chr7_4:41288047-41288066 Msa1154020:intron 30.0%
! AATAAAACTTTGAGAGAGGT+TGG + chr7_4:41288051-41288070 Msa1154020:intron 30.0%
! GAAAATAATCTTTTTGCTGG+TGG + chr7_4:41288185-41288204 Msa1154020:intron 30.0%
AGGTGAAATGGTTTATGTTT+GGG + chr7_4:41288271-41288290 Msa1154020:intron 30.0%
! GTTAATTTTCTGACTCAATG+TGG + chr7_4:41288332-41288351 Msa1154020:intron 30.0%
GACAAGGAAATCTAAATGTT+TGG - chr7_4:41288548-41288567 None:intergenic 30.0%
TGAAAAACGAAGTATAACAC+AGG - chr7_4:41288585-41288604 None:intergenic 30.0%
TAGAATGGAAACAGATTGTT+GGG + chr7_4:41288840-41288859 Msa1154020:intron 30.0%
AAGTATGATGCAACATAGTT+TGG + chr7_4:41288911-41288930 Msa1154020:intron 30.0%
GTGTACTTGCATTATAGTTT+AGG - chr7_4:41288969-41288988 None:intergenic 30.0%
GATGATATAAATTGCATCTG+TGG + chr7_4:41289336-41289355 Msa1154020:intron 30.0%
ATCTGTGGCAATTAATAAGT+AGG + chr7_4:41289351-41289370 Msa1154020:intron 30.0%
CATTTGTCACAATTAATGAG+TGG + chr7_4:41289420-41289439 Msa1154020:intron 30.0%
!!! CATCTGACTCTTCTTTTTTA+TGG - chr7_4:41289495-41289514 None:intergenic 30.0%
AAAAAGACAAATTCTTTCGG+GGG - chr7_4:41289722-41289741 None:intergenic 30.0%
CAAAAAGACAAATTCTTTCG+GGG - chr7_4:41289723-41289742 None:intergenic 30.0%
! CGAAAGAATTTGTCTTTTTG+AGG + chr7_4:41289723-41289742 Msa1154020:intron 30.0%
ATCTAACTCATTTATGTGAG+TGG + chr7_4:41289839-41289858 Msa1154020:intron 30.0%
AAGAGTCTTTAGTGATGTTA+TGG + chr7_4:41289863-41289882 Msa1154020:intron 30.0%
AGACAAGATAACAACAGAAA+AGG - chr7_4:41289962-41289981 None:intergenic 30.0%
GTAACTTCTCATTATGATCA+AGG - chr7_4:41290175-41290194 None:intergenic 30.0%
! AGTTACTAGTTAGCCTAAAT+AGG + chr7_4:41290189-41290208 Msa1154020:intron 30.0%
TAGAGAATTTGGACCTATTT+AGG - chr7_4:41290205-41290224 None:intergenic 30.0%
ACTGAAAGCAAAAGAATTGT+TGG - chr7_4:41290230-41290249 None:intergenic 30.0%
CCTAGAAAATAAAGGTTTGA+GGG - chr7_4:41290437-41290456 None:intergenic 30.0%
! AATACTGGCCTAGAAAATAA+AGG - chr7_4:41290445-41290464 None:intergenic 30.0%
GATTGTTATACGAGTAAATC+AGG + chr7_4:41290539-41290558 Msa1154020:intron 30.0%
TTGTTATACGAGTAAATCAG+GGG + chr7_4:41290541-41290560 Msa1154020:intron 30.0%
! CAACTATGAATCAATGCTTT+TGG - chr7_4:41290594-41290613 None:intergenic 30.0%
TAAAACACCATTTGGGAAAA+AGG - chr7_4:41290756-41290775 None:intergenic 30.0%
GATACAGCATTAATCACTTA+AGG - chr7_4:41290934-41290953 None:intergenic 30.0%
! GAACTTTTGTGATTCTATAC+AGG - chr7_4:41291228-41291247 None:intergenic 30.0%
ATATTGAATGTCAAGAGAGT+AGG + chr7_4:41291524-41291543 Msa1154020:intron 30.0%
TGTAAATGGAATATGATTGC+AGG + chr7_4:41291647-41291666 Msa1154020:intron 30.0%
ACTGCAAAAAAATTATGACG+AGG - chr7_4:41292005-41292024 None:intergenic 30.0%
!! GTTTCTAGTCTAGAGGATAA+GGG - chr7_4:41286986-41287005 None:intergenic 35.0%
GGTATGAAGAAGAAGATTTG+CGG - chr7_4:41287096-41287115 None:intergenic 35.0%
ATTAGTGGAATTAAGAAGGG+TGG - chr7_4:41287204-41287223 None:intergenic 35.0%
GGTACTAATATCGAAGTTGA+TGG + chr7_4:41287276-41287295 Msa1154020:CDS 35.0%
TTAAGAATCTCACATCGGAT+AGG + chr7_4:41287594-41287613 Msa1154020:intron 35.0%
CCTTCTTACAAATCATGGTT+GGG - chr7_4:41287692-41287711 None:intergenic 35.0%
TCCTTCTTACAAATCATGGT+TGG - chr7_4:41287693-41287712 None:intergenic 35.0%
! GTGTCGGTATTATTCAATTG+CGG + chr7_4:41287887-41287906 Msa1154020:intron 35.0%
TCACCAATGTTGTCAAATAG+CGG - chr7_4:41287966-41287985 None:intergenic 35.0%
AAATACCAGTGTGTGCTTTA+AGG + chr7_4:41288110-41288129 Msa1154020:intron 35.0%
TTTAGTTGCGATTGAGTTTG+AGG + chr7_4:41288251-41288270 Msa1154020:intron 35.0%
GAGGTGAAATGGTTTATGTT+TGG + chr7_4:41288270-41288289 Msa1154020:intron 35.0%
!! TAGAGGTTTTTGGATATCGT+CGG - chr7_4:41288436-41288455 None:intergenic 35.0%
AGGTTTCATTTCATGGTTGA+AGG - chr7_4:41288500-41288519 None:intergenic 35.0%
TGCTACCACCATAAAAAAAG+GGG - chr7_4:41288624-41288643 None:intergenic 35.0%
GTGCTACCACCATAAAAAAA+GGG - chr7_4:41288625-41288644 None:intergenic 35.0%
AGTGCTACCACCATAAAAAA+AGG - chr7_4:41288626-41288645 None:intergenic 35.0%
! TTAGTAATATAGGTGTCGCA+TGG + chr7_4:41288659-41288678 Msa1154020:intron 35.0%
TTACCTGTTCATATTCACTC+TGG + chr7_4:41288709-41288728 Msa1154020:intron 35.0%
CATTCTACCTCCACAAATTA+GGG - chr7_4:41288827-41288846 None:intergenic 35.0%
GTAGAATGGAAACAGATTGT+TGG + chr7_4:41288839-41288858 Msa1154020:intron 35.0%
TATGATGCAACATAGTTTGG+AGG + chr7_4:41288914-41288933 Msa1154020:intron 35.0%
CAGATACTATCTATGAAGCA+CGG + chr7_4:41289000-41289019 Msa1154020:intron 35.0%
GTATAGTATCCTATGAAGCA+CGG - chr7_4:41289192-41289211 None:intergenic 35.0%
! GAAATGATGTGTCGTTGTAT+TGG - chr7_4:41289219-41289238 None:intergenic 35.0%
ATATGGGAGGATAAATGAAC+TGG + chr7_4:41289642-41289661 Msa1154020:intron 35.0%
AAAAGACAAATTCTTTCGGG+GGG - chr7_4:41289721-41289740 None:intergenic 35.0%
TAGCAATCCACAAGAAAACA+GGG - chr7_4:41289814-41289833 None:intergenic 35.0%
TTAGCAATCCACAAGAAAAC+AGG - chr7_4:41289815-41289834 None:intergenic 35.0%
AGCTTCATCAATCTGTCAAA+AGG - chr7_4:41289994-41290013 None:intergenic 35.0%
TGATGAAGCTGATATAGTCA+AGG + chr7_4:41290004-41290023 Msa1154020:CDS 35.0%
TGGTGTTCAATTTGTCTTCA+TGG + chr7_4:41290052-41290071 Msa1154020:CDS 35.0%
TCAATTTGTCTTCATGGACT+TGG + chr7_4:41290058-41290077 Msa1154020:CDS 35.0%
CATTATGATCAAGGACTGAT+AGG - chr7_4:41290166-41290185 None:intergenic 35.0%
ATACTATCAGAGTACATACG+AGG + chr7_4:41290283-41290302 Msa1154020:intron 35.0%
AAGTTGGGAACAAAACAAAG+TGG + chr7_4:41290327-41290346 Msa1154020:CDS 35.0%
AAAACAAAGTGGCTGAAAGA+AGG + chr7_4:41290338-41290357 Msa1154020:CDS 35.0%
!! TGCAATTTGCTGTTATGGAA+TGG + chr7_4:41290368-41290387 Msa1154020:CDS 35.0%
!!! CCCTCAAACCTTTATTTTCT+AGG + chr7_4:41290434-41290453 Msa1154020:intron 35.0%
GCCTAGAAAATAAAGGTTTG+AGG - chr7_4:41290438-41290457 None:intergenic 35.0%
! GAGTATTCCTTTTTCCCAAA+TGG + chr7_4:41290746-41290765 Msa1154020:intron 35.0%
GCACTAGTAAAACACCATTT+GGG - chr7_4:41290763-41290782 None:intergenic 35.0%
AGCACTAGTAAAACACCATT+TGG - chr7_4:41290764-41290783 None:intergenic 35.0%
!! TCAAAGCATTGACAAGTACA+AGG + chr7_4:41290806-41290825 Msa1154020:intron 35.0%
CCTTAAGCTTGACTGTTATA+GGG - chr7_4:41291100-41291119 None:intergenic 35.0%
ACCTTAAGCTTGACTGTTAT+AGG - chr7_4:41291101-41291120 None:intergenic 35.0%
TAAGAAAATGGCATCACCTT+GGG - chr7_4:41291159-41291178 None:intergenic 35.0%
ATAAGAAAATGGCATCACCT+TGG - chr7_4:41291160-41291179 None:intergenic 35.0%
TTTGTGATTCTATACAGGAC+TGG - chr7_4:41291223-41291242 None:intergenic 35.0%
AAGCTAAAAAAGGACAACCT+AGG + chr7_4:41291388-41291407 Msa1154020:intron 35.0%
AGCTAAAAAAGGACAACCTA+GGG + chr7_4:41291389-41291408 Msa1154020:intron 35.0%
! GGGCAATAAAAAAGCACAAT+AGG - chr7_4:41291598-41291617 None:intergenic 35.0%
CTTGCAGAACTAACTGTAAA+TGG + chr7_4:41291633-41291652 Msa1154020:intron 35.0%
AAATGGAATATGATTGCAGG+TGG + chr7_4:41291650-41291669 Msa1154020:intron 35.0%
TCGCCTATATTTACAAAGAG+CGG - chr7_4:41291722-41291741 None:intergenic 35.0%
AAATATAGGCGAGGAAATAC+TGG + chr7_4:41291730-41291749 Msa1154020:CDS 35.0%
! ATACTGGTTGATACAAGATC+TGG + chr7_4:41291746-41291765 Msa1154020:CDS 35.0%
! TACTGGTTGATACAAGATCT+GGG + chr7_4:41291747-41291766 Msa1154020:CDS 35.0%
TAACTTTAGTTGCGAAACTG+AGG + chr7_4:41291933-41291952 Msa1154020:three_prime_UTR 35.0%
GGCATTATTCATCATGATTG+TGG + chr7_4:41291963-41291982 Msa1154020:three_prime_UTR 35.0%
!! GGTTTCTAGTCTAGAGGATA+AGG - chr7_4:41286987-41287006 None:intergenic 40.0%
ACGACAACACAACATGATAG+CGG + chr7_4:41287030-41287049 Msa1154020:exon 40.0%
ATAGGAGAGATTGAGCTTCA+AGG - chr7_4:41287065-41287084 None:intergenic 40.0%
AGATTTGCGGAGAGAGAAAT+AGG - chr7_4:41287083-41287102 None:intergenic 40.0%
TGAGAAAACGGGGATTAGAA+GGG - chr7_4:41287141-41287160 None:intergenic 40.0%
GAGTTTCTTCATGTGAAACC+TGG + chr7_4:41287412-41287431 Msa1154020:intron 40.0%
CTTCATGTGAAACCTGGAAA+AGG + chr7_4:41287418-41287437 Msa1154020:CDS 40.0%
!!! AACTCACAAGCCGGTTTTTT+GGG + chr7_4:41287655-41287674 Msa1154020:intron 40.0%
CTAACACAACCCCAAAAAAC+CGG - chr7_4:41287668-41287687 None:intergenic 40.0%
! CCCAACCATGATTTGTAAGA+AGG + chr7_4:41287689-41287708 Msa1154020:intron 40.0%
!! TTTTTGGGAATAGGGGTAGA+GGG + chr7_4:41287790-41287809 Msa1154020:intron 40.0%
! CAATTGCGGATTGTGGAAAA+TGG + chr7_4:41287901-41287920 Msa1154020:intron 40.0%
TAGCGGCACTAAAACACTAT+AGG - chr7_4:41287949-41287968 None:intergenic 40.0%
CATTGGTGAGCGTTTGATAA+AGG + chr7_4:41287977-41287996 Msa1154020:intron 40.0%
GCAGTAAAAGCCCTTACTTT+AGG - chr7_4:41288212-41288231 None:intergenic 40.0%
! AAAGTAAGGGCTTTTACTGC+TGG + chr7_4:41288212-41288231 Msa1154020:intron 40.0%
! AAGTAAGGGCTTTTACTGCT+GGG + chr7_4:41288213-41288232 Msa1154020:intron 40.0%
! CGATTGAGTTTGAGGTGAAA+TGG + chr7_4:41288259-41288278 Msa1154020:intron 40.0%
!! AGAGGTTTTTGGATATCGTC+GGG - chr7_4:41288435-41288454 None:intergenic 40.0%
GTGTGTCAGGTTTCATTTCA+TGG - chr7_4:41288507-41288526 None:intergenic 40.0%
ATGAAACCTGACACACATTG+AGG + chr7_4:41288511-41288530 Msa1154020:intron 40.0%
! AATTAGCCTCAATGTGTGTC+AGG - chr7_4:41288520-41288539 None:intergenic 40.0%
TGACACACATTGAGGCTAAT+TGG + chr7_4:41288519-41288538 Msa1154020:intron 40.0%
CCATAAAAAAAGGGGGTTTC+CGG - chr7_4:41288616-41288635 None:intergenic 40.0%
!!! GAAACCCCCTTTTTTTATGG+TGG + chr7_4:41288616-41288635 Msa1154020:intron 40.0%
GCTACCACCATAAAAAAAGG+GGG - chr7_4:41288623-41288642 None:intergenic 40.0%
TCTCCAGAGTGAATATGAAC+AGG - chr7_4:41288715-41288734 None:intergenic 40.0%
TTGCATCATACCTACCTTCA+TGG + chr7_4:41288784-41288803 Msa1154020:intron 40.0%
TGCATCATACCTACCTTCAT+GGG + chr7_4:41288785-41288804 Msa1154020:intron 40.0%
CCATTCTACCTCCACAAATT+AGG - chr7_4:41288828-41288847 None:intergenic 40.0%
! CCTAATTTGTGGAGGTAGAA+TGG + chr7_4:41288825-41288844 Msa1154020:intron 40.0%
CTCACCAGCAAATCTCAATT+AGG - chr7_4:41288866-41288885 None:intergenic 40.0%
!! AATTGAGATTTGCTGGTGAG+TGG + chr7_4:41288866-41288885 Msa1154020:intron 40.0%
CTATCTATGAAGCACGGATA+CGG + chr7_4:41289006-41289025 Msa1154020:intron 40.0%
TAAGGGAATTATGAGCTGAG+TGG + chr7_4:41289376-41289395 Msa1154020:intron 40.0%
AAGGGAATTATGAGCTGAGT+GGG + chr7_4:41289377-41289396 Msa1154020:intron 40.0%
! TGGCTTCACATTTTATTCCC+AGG - chr7_4:41289475-41289494 None:intergenic 40.0%
!! ATGTATTGACTGCATGCCAA+AGG + chr7_4:41289512-41289531 Msa1154020:intron 40.0%
ATACAGCATCAACATGCCTT+TGG - chr7_4:41289531-41289550 None:intergenic 40.0%
AGAACACATCGAGTACGATA+TGG + chr7_4:41289625-41289644 Msa1154020:intron 40.0%
GAACACATCGAGTACGATAT+GGG + chr7_4:41289626-41289645 Msa1154020:intron 40.0%
! AAAACCACCCTGTTTTCTTG+TGG + chr7_4:41289804-41289823 Msa1154020:intron 40.0%
! TTCATGGACTTGGTATCATC+TGG + chr7_4:41290068-41290087 Msa1154020:intron 40.0%
ACTTGGTATCATCTGGAAAC+TGG + chr7_4:41290075-41290094 Msa1154020:intron 40.0%
GTCTGGATGAATCAGAAGTT+GGG + chr7_4:41290312-41290331 Msa1154020:CDS 40.0%
AAAGTGGCTGAAAGAAGGAA+TGG + chr7_4:41290343-41290362 Msa1154020:CDS 40.0%
!! TGGACTGCAATTTGCTGTTA+TGG + chr7_4:41290363-41290382 Msa1154020:CDS 40.0%
! AGGTTTGAGGGTGTGAAAAA+CGG - chr7_4:41290425-41290444 None:intergenic 40.0%
CCCTATAACAGTCAAGCTTA+AGG + chr7_4:41291097-41291116 Msa1154020:CDS 40.0%
! CAGTGGATTTGTCTCTTTCT+TGG - chr7_4:41291442-41291461 None:intergenic 40.0%
GTTAGACTCTTACAAACGCA+AGG - chr7_4:41291488-41291507 None:intergenic 40.0%
GAATGTCAAGAGAGTAGGAT+CGG + chr7_4:41291529-41291548 Msa1154020:intron 40.0%
GCAAGTGAATGCAAGACAAA+GGG - chr7_4:41291618-41291637 None:intergenic 40.0%
TGCAAGTGAATGCAAGACAA+AGG - chr7_4:41291619-41291638 None:intergenic 40.0%
GTCCCGCTCTTTGTAAATAT+AGG + chr7_4:41291716-41291735 Msa1154020:CDS 40.0%
CGCCTATATTTACAAAGAGC+GGG - chr7_4:41291721-41291740 None:intergenic 40.0%
GCTCTTTGTAAATATAGGCG+AGG + chr7_4:41291721-41291740 Msa1154020:CDS 40.0%
ATCATGATGAATAATGCCGC+AGG - chr7_4:41291961-41291980 None:intergenic 40.0%
CGACAACACAACATGATAGC+GGG + chr7_4:41287031-41287050 Msa1154020:exon 45.0%
TGCGAATAGGAAAGTTGGAG+GGG - chr7_4:41287117-41287136 None:intergenic 45.0%
GTGCGAATAGGAAAGTTGGA+GGG - chr7_4:41287118-41287137 None:intergenic 45.0%
GAGAAAACGGGGATTAGAAG+GGG - chr7_4:41287140-41287159 None:intergenic 45.0%
CTGAGAAAACGGGGATTAGA+AGG - chr7_4:41287142-41287161 None:intergenic 45.0%
AGTGGGGCTTACTGAGAAAA+CGG - chr7_4:41287153-41287172 None:intergenic 45.0%
AAGAAGGGTGGTTAGAGAAG+AGG - chr7_4:41287192-41287211 None:intergenic 45.0%
!! TCGAAGTTGATGGTTCACCT+TGG + chr7_4:41287286-41287305 Msa1154020:CDS 45.0%
GTATTACCTAAGACACGCCA+AGG - chr7_4:41287306-41287325 None:intergenic 45.0%
! ACAAATGCAGCACCTTTTCC+AGG - chr7_4:41287433-41287452 None:intergenic 45.0%
!! GAAAAGGTGCTGCATTTGTG+AGG + chr7_4:41287434-41287453 Msa1154020:CDS 45.0%
GTTGAAAAGACCTTCAGAGC+TGG + chr7_4:41287490-41287509 Msa1154020:CDS 45.0%
!! AAAAACCGGCTTGTGAGTTG+AGG - chr7_4:41287654-41287673 None:intergenic 45.0%
!!! CAACTCACAAGCCGGTTTTT+TGG + chr7_4:41287654-41287673 Msa1154020:intron 45.0%
!!! ACTCACAAGCCGGTTTTTTG+GGG + chr7_4:41287656-41287675 Msa1154020:intron 45.0%
!!! CGGTTTTTTGGGGTTGTGTT+AGG + chr7_4:41287666-41287685 Msa1154020:intron 45.0%
!! CTTTTTGGGAATAGGGGTAG+AGG + chr7_4:41287789-41287808 Msa1154020:intron 45.0%
! TTGCGGATTGTGGAAAATGG+AGG + chr7_4:41287904-41287923 Msa1154020:intron 45.0%
! GTGCCGCTATTTGACAACAT+TGG + chr7_4:41287960-41287979 Msa1154020:intron 45.0%
GGTCACACATGTTAGCGAAA+AGG - chr7_4:41288078-41288097 None:intergenic 45.0%
!! ACCAGTGTGTGCTTTAAGGT+TGG + chr7_4:41288114-41288133 Msa1154020:intron 45.0%
!! CCAGTGTGTGCTTTAAGGTT+GGG + chr7_4:41288115-41288134 Msa1154020:intron 45.0%
GGTCACACATTCTGGCAAAA+AGG - chr7_4:41288141-41288160 None:intergenic 45.0%
ATAGTCAAACTGAGCGCCTA+AGG + chr7_4:41288395-41288414 Msa1154020:intron 45.0%
!! GGCAAAGTGGATTTTGCCTT+AGG - chr7_4:41288414-41288433 None:intergenic 45.0%
GGTTGAACAAGCAACTGACA+AGG - chr7_4:41288564-41288583 None:intergenic 45.0%
!! TTCGTTTTTCATCTCGCAGC+CGG + chr7_4:41288594-41288613 Msa1154020:intron 45.0%
!!! CCGGAAACCCCCTTTTTTTA+TGG + chr7_4:41288613-41288632 Msa1154020:intron 45.0%
CTACCTCCACAAATTAGGGT+GGG - chr7_4:41288823-41288842 None:intergenic 45.0%
TCTACCTCCACAAATTAGGG+TGG - chr7_4:41288824-41288843 None:intergenic 45.0%
TGGGCCTAATTGAGATTTGC+TGG + chr7_4:41288859-41288878 Msa1154020:intron 45.0%
ATGAAGCACGGATACGGATA+CGG + chr7_4:41289012-41289031 Msa1154020:intron 45.0%
! ATTTAGCTGTGTCGGCGTAT+CGG - chr7_4:41289063-41289082 None:intergenic 45.0%
!! TATATGTGTCGGTGTCGTAC+CGG + chr7_4:41289113-41289132 Msa1154020:intron 45.0%
ATGTGTTCTGATACGCTGAC+AGG - chr7_4:41289614-41289633 None:intergenic 45.0%
CAATCCACAAGAAAACAGGG+TGG - chr7_4:41289811-41289830 None:intergenic 45.0%
CGTCTGGATGAATCAGAAGT+TGG + chr7_4:41290311-41290330 Msa1154020:CDS 45.0%
!! TTGCGTATGCATAGCTTGCT+AGG + chr7_4:41290899-41290918 Msa1154020:intron 45.0%
CAAGCTTAAGGTAGTCGATG+TGG + chr7_4:41291109-41291128 Msa1154020:CDS 45.0%
TAAGGTAGTCGATGTGGATC+CGG + chr7_4:41291115-41291134 Msa1154020:CDS 45.0%
TGGAATATGATTGCAGGTGG+TGG + chr7_4:41291653-41291672 Msa1154020:intron 45.0%
!!! TTTTTTTTCTATTTTTTAAA+AGG + chr7_4:41289567-41289586 Msa1154020:intron 5.0%
!!! TTTTTTTCTATTTTTTAAAA+GGG + chr7_4:41289568-41289587 Msa1154020:intron 5.0%
!!! TATTTTAAACATAAAATTTA+AGG + chr7_4:41290971-41290990 Msa1154020:intron 5.0%
GGTGCGAATAGGAAAGTTGG+AGG - chr7_4:41287119-41287138 None:intergenic 50.0%
! AGGGGTGCGAATAGGAAAGT+TGG - chr7_4:41287122-41287141 None:intergenic 50.0%
! GGATTAGAAGGGGTGCGAAT+AGG - chr7_4:41287130-41287149 None:intergenic 50.0%
TGGGGCTTACTGAGAAAACG+GGG - chr7_4:41287151-41287170 None:intergenic 50.0%
GTGGGGCTTACTGAGAAAAC+GGG - chr7_4:41287152-41287171 None:intergenic 50.0%
GACCTTCAGAGCTGGAAGTT+CGG + chr7_4:41287498-41287517 Msa1154020:CDS 50.0%
! TACCGAACTTCCAGCTCTGA+AGG - chr7_4:41287503-41287522 None:intergenic 50.0%
GCAATCCTCAACTCACAAGC+CGG + chr7_4:41287646-41287665 Msa1154020:intron 50.0%
CCCAACCTTAAAGCACACAC+TGG - chr7_4:41288118-41288137 None:intergenic 50.0%
AGCAAGAGGGTCACACATTC+TGG - chr7_4:41288149-41288168 None:intergenic 50.0%
! TTGCTGGTGGGCCTAAAGTA+AGG + chr7_4:41288198-41288217 Msa1154020:intron 50.0%
! TGCTGGTGGGCCTAAAGTAA+GGG + chr7_4:41288199-41288218 Msa1154020:intron 50.0%
TTGGATATCGTCGGGCAAAG+TGG - chr7_4:41288427-41288446 None:intergenic 50.0%
GGTTGTTTGCCCATGAAGGT+AGG - chr7_4:41288797-41288816 None:intergenic 50.0%
TCCACAAATTAGGGTGGGTC+GGG - chr7_4:41288818-41288837 None:intergenic 50.0%
CTCCACAAATTAGGGTGGGT+CGG - chr7_4:41288819-41288838 None:intergenic 50.0%
TATGAAGCACGGACACTCCT+CGG - chr7_4:41289181-41289200 None:intergenic 50.0%
!! GACAGGCATCGGTGAAGTAT+TGG - chr7_4:41289597-41289616 None:intergenic 50.0%
TCTGATACGCTGACAGGCAT+CGG - chr7_4:41289608-41289627 None:intergenic 50.0%
CACATCGAGTACGATATGGG+AGG + chr7_4:41289629-41289648 Msa1154020:intron 50.0%
GACAAATTCTTTCGGGGGGT+GGG - chr7_4:41289717-41289736 None:intergenic 50.0%
AGACAAATTCTTTCGGGGGG+TGG - chr7_4:41289718-41289737 None:intergenic 50.0%
TACATACGAGGAGACTCGTC+TGG + chr7_4:41290295-41290314 Msa1154020:CDS 50.0%
!! ATGCATAGCTTGCTAGGCAC+AGG + chr7_4:41290905-41290924 Msa1154020:intron 50.0%
!! TGCATAGCTTGCTAGGCACA+GGG + chr7_4:41290906-41290925 Msa1154020:intron 50.0%
AAGGTAGTCGATGTGGATCC+GGG + chr7_4:41291116-41291135 Msa1154020:CDS 50.0%
GATGTGGATCCGGGACTTAA+GGG + chr7_4:41291125-41291144 Msa1154020:CDS 50.0%
TTCTTGGATCCTGCCAAGGT+GGG - chr7_4:41291426-41291445 None:intergenic 50.0%
TTTCTTGGATCCTGCCAAGG+TGG - chr7_4:41291427-41291446 None:intergenic 50.0%
CTCTTTCTTGGATCCTGCCA+AGG - chr7_4:41291430-41291449 None:intergenic 50.0%
GGTTCACCTTGGCGTGTCTT+AGG + chr7_4:41287297-41287316 Msa1154020:CDS 55.0%
! GTCGGGTTGTTTGCCCATGA+AGG - chr7_4:41288801-41288820 None:intergenic 55.0%
ACCCGACCCACCCTAATTTG+TGG + chr7_4:41288814-41288833 Msa1154020:intron 55.0%
! CGACCCACCCTAATTTGTGG+AGG + chr7_4:41288817-41288836 Msa1154020:intron 55.0%
CACGGATACGGATACGGACA+CGG + chr7_4:41289018-41289037 Msa1154020:intron 55.0%
TGTCATCCCGTGTCAGACAC+GGG - chr7_4:41289142-41289161 None:intergenic 55.0%
GTGTCATCCCGTGTCAGACA+CGG - chr7_4:41289143-41289162 None:intergenic 55.0%
GTGTCTGACACGGGATGACA+CGG + chr7_4:41289142-41289161 Msa1154020:intron 55.0%
TGTCTGACACGGGATGACAC+GGG + chr7_4:41289143-41289162 Msa1154020:intron 55.0%
!! GAGGAGTGTCCGTGCTTCAT+AGG + chr7_4:41289180-41289199 Msa1154020:intron 55.0%
AATTCTTTCGGGGGGTGGGT+GGG - chr7_4:41289713-41289732 None:intergenic 55.0%
AAATTCTTTCGGGGGGTGGG+TGG - chr7_4:41289714-41289733 None:intergenic 55.0%
CGATGTGGATCCGGGACTTA+AGG + chr7_4:41291124-41291143 Msa1154020:CDS 55.0%
GCTGTGTCACCCTTAAGTCC+CGG - chr7_4:41291137-41291156 None:intergenic 55.0%
CTTAAGGGTGACACAGCCCA+AGG + chr7_4:41291140-41291159 Msa1154020:CDS 55.0%
TCTTGGATCCTGCCAAGGTG+GGG - chr7_4:41291425-41291444 None:intergenic 55.0%
AAGCCAGCAACTCTCGACAC+TGG + chr7_4:41291680-41291699 Msa1154020:CDS 55.0%
TTGCGAAACTGAGGCTCCTG+CGG + chr7_4:41291942-41291961 Msa1154020:three_prime_UTR 55.0%
GACACGGACACGACACGACA+CGG + chr7_4:41289034-41289053 Msa1154020:intron 60.0%
ACGGGAACACGCCTTATCCG+AGG + chr7_4:41289161-41289180 Msa1154020:intron 60.0%
GCACGGACACTCCTCGGATA+AGG - chr7_4:41289175-41289194 None:intergenic 60.0%
! GTGGGGGGGCTTTATACCCT+AGG - chr7_4:41291408-41291427 None:intergenic 60.0%
GGTATAAAGCCCCCCCACCT+TGG + chr7_4:41291410-41291429 Msa1154020:intron 60.0%
TTGGATCCTGCCAAGGTGGG+GGG - chr7_4:41291423-41291442 None:intergenic 60.0%
CTTGGATCCTGCCAAGGTGG+GGG - chr7_4:41291424-41291443 None:intergenic 60.0%
! GCACCAGTGTCGAGAGTTGC+TGG - chr7_4:41291686-41291705 None:intergenic 60.0%
CCGTGTCAGACACGGGTCAC+CGG - chr7_4:41289135-41289154 None:intergenic 65.0%
CCGGTGACCCGTGTCTGACA+CGG + chr7_4:41289132-41289151 Msa1154020:intron 65.0%
CGGTGACCCGTGTCTGACAC+GGG + chr7_4:41289133-41289152 Msa1154020:intron 65.0%
TAAAGCCCCCCCACCTTGGC+AGG + chr7_4:41291414-41291433 Msa1154020:intron 65.0%
TGGATCCTGCCAAGGTGGGG+GGG - chr7_4:41291422-41291441 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 41286974 41292067 41286974 ID=Msa1154020;Name=Msa1154020
chr7_4 mRNA 41286974 41292067 41286974 ID=Msa1154020-mRNA-1;Parent=Msa1154020;Name=Msa1154020-mRNA-1;_AED=0.01;_eAED=0.01;_QI=69|1|1|1|1|1|7|277|228
chr7_4 exon 41286974 41287160 41286974 ID=Msa1154020-mRNA-1:exon:9985;Parent=Msa1154020-mRNA-1
chr7_4 exon 41287241 41287318 41287241 ID=Msa1154020-mRNA-1:exon:9986;Parent=Msa1154020-mRNA-1
chr7_4 exon 41287413 41287519 41287413 ID=Msa1154020-mRNA-1:exon:9987;Parent=Msa1154020-mRNA-1
chr7_4 exon 41290002 41290079 41290002 ID=Msa1154020-mRNA-1:exon:9988;Parent=Msa1154020-mRNA-1
chr7_4 exon 41290293 41290394 41290293 ID=Msa1154020-mRNA-1:exon:9989;Parent=Msa1154020-mRNA-1
chr7_4 exon 41291080 41291161 41291080 ID=Msa1154020-mRNA-1:exon:9990;Parent=Msa1154020-mRNA-1
chr7_4 exon 41291669 41292067 41291669 ID=Msa1154020-mRNA-1:exon:9991;Parent=Msa1154020-mRNA-1
chr7_4 five_prime_UTR 41286974 41287042 41286974 ID=Msa1154020-mRNA-1:five_prime_utr;Parent=Msa1154020-mRNA-1
chr7_4 CDS 41287043 41287160 41287043 ID=Msa1154020-mRNA-1:cds;Parent=Msa1154020-mRNA-1
chr7_4 CDS 41287241 41287318 41287241 ID=Msa1154020-mRNA-1:cds;Parent=Msa1154020-mRNA-1
chr7_4 CDS 41287413 41287519 41287413 ID=Msa1154020-mRNA-1:cds;Parent=Msa1154020-mRNA-1
chr7_4 CDS 41290002 41290079 41290002 ID=Msa1154020-mRNA-1:cds;Parent=Msa1154020-mRNA-1
chr7_4 CDS 41290293 41290394 41290293 ID=Msa1154020-mRNA-1:cds;Parent=Msa1154020-mRNA-1
chr7_4 CDS 41291080 41291161 41291080 ID=Msa1154020-mRNA-1:cds;Parent=Msa1154020-mRNA-1
chr7_4 CDS 41291669 41291790 41291669 ID=Msa1154020-mRNA-1:cds;Parent=Msa1154020-mRNA-1
chr7_4 three_prime_UTR 41291791 41292067 41291791 ID=Msa1154020-mRNA-1:three_prime_utr;Parent=Msa1154020-mRNA-1
Gene Sequence

>Msa1154020

ATGATAGCGGGAAGTGCTACCTTGAAGCTCAATCTCTCCTATTTCTCTCTCCGCAAATCTTCTTCTTCATACCCCTCCAACTTTCCTATTCGCACCCCTTCTAATCCCCGTTTTCTCAAGATTTATGCTATTTCTAGTAATGACATTAAAGTTGGTACTAATATCGAAGTTGATGGTTCACCTTGGCGTGTCTTAGAGTTTCTTCATGTGAAACCTGGAAAAGGTGCTGCATTTGTGAGGACTAAGCTTAAGAATCATCTTACTGGAAATACTGTTGAAAAGACCTTCAGAGCTGGAAGTTCGATTGATGAAGCTGATATAGTCAAGGAAACAAAACAGTTCACATATAAAGATGGTGTTCAATTTGTCTTCATGGACTTGAGTACATACGAGGAGACTCGTCTGGATGAATCAGAAGTTGGGAACAAAACAAAGTGGCTGAAAGAAGGAATGGACTGCAATTTGCTGTTATGGAATGGAAAAGTTATTGATGTTGATCTCCCTATAACAGTCAAGCTTAAGGTAGTCGATGTGGATCCGGGACTTAAGGGTGACACAGCCCAAGGTGGTGGATCAAAGCCAGCAACTCTCGACACTGGTGCTATTGTCAATGTCCCGCTCTTTGTAAATATAGGCGAGGAAATACTGGTTGATACAAGATCTGGGCAGTACATGAGCCGTGCTTAA

Protein sequence

>Msa1154020

MIAGSATLKLNLSYFSLRKSSSSYPSNFPIRTPSNPRFLKIYAISSNDIKVGTNIEVDGSPWRVLEFLHVKPGKGAAFVRTKLKNHLTGNTVEKTFRAGSSIDEADIVKETKQFTYKDGVQFVFMDLSTYEETRLDESEVGNKTKWLKEGMDCNLLLWNGKVIDVDLPITVKLKVVDVDPGLKGDTAQGGGSKPATLDTGAIVNVPLFVNIGEEILVDTRSGQYMSRA*