AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1110350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1110350 MtrunA17_Chr7g0244891 90.129 233 18 1 1 228 1 233 7.40e-139 388
Msa1110350 MtrunA17_Chr3g0121231 26.984 189 124 4 44 228 62 240 1.08e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1110350 AT3G08740.1 68.559 229 69 3 2 228 9 236 2.69e-111 319
Msa1110350 AT4G26310.1 27.941 204 136 5 29 227 58 255 1.35e-19 84.7
Msa1110350 AT4G26310.2 27.624 181 120 5 29 204 58 232 1.44e-13 68.6

Find 67 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTGTTCAATTTGTCTTCA+TGG 0.273598 7_3:+55154438 Msa1110350:CDS
AGATTTGCGGAGAGAGAAAT+AGG 0.307200 7_3:-55151448 None:intergenic
ACCTTAAGCTTGACTGTTAT+AGG 0.325039 7_3:-55155484 None:intergenic
CGATGTGGATCCGGGACTTA+AGG 0.328589 7_3:+55155510 Msa1110350:CDS
AAGCTTAAGAATCATCTTAC+TGG 0.330470 7_3:+55151818 Msa1110350:CDS
GGTTCACCTTGGCGTGTCTT+AGG 0.336234 7_3:+55151665 Msa1110350:CDS
TGGACTGCAATTTGCTGTTA+TGG 0.343872 7_3:+55154749 Msa1110350:CDS
CTGAGAAAACGGGGATTAGA+AGG 0.346976 7_3:-55151507 None:intergenic
CCTTAAGCTTGACTGTTATA+GGG 0.349152 7_3:-55155483 None:intergenic
GCACCAGTGTCGAGAGTTGC+TGG 0.378675 7_3:-55156069 None:intergenic
GGTTTCTAGTCTAGAGGATA+AGG 0.406130 7_3:-55151352 None:intergenic
TCAATTTGTCTTCATGGACT+TGG 0.409456 7_3:+55154444 Msa1110350:CDS
TAAGGTAGTCGATGTGGATC+CGG 0.417488 7_3:+55155501 Msa1110350:CDS
AGGGGTGCGAATAGGAAAGT+TGG 0.419595 7_3:-55151487 None:intergenic
CCCTATAACAGTCAAGCTTA+AGG 0.429085 7_3:+55155483 Msa1110350:CDS
AAATATAGGCGAGGAAATAC+TGG 0.432665 7_3:+55156116 Msa1110350:CDS
GGTACTAATATCGAAGTTGA+TGG 0.439639 7_3:+55151644 Msa1110350:CDS
ATACTGGTTGATACAAGATC+TGG 0.444124 7_3:+55156132 Msa1110350:CDS
CGTCTGGATGAATCAGAAGT+TGG 0.444955 7_3:+55154697 Msa1110350:CDS
GGATTAGAAGGGGTGCGAAT+AGG 0.455811 7_3:-55151495 None:intergenic
TCTAGTAATGACATTAAAGT+TGG 0.456626 7_3:+55151623 Msa1110350:CDS
GATGTGGATCCGGGACTTAA+GGG 0.461872 7_3:+55155511 Msa1110350:CDS
GACCTTCAGAGCTGGAAGTT+CGG 0.469297 7_3:+55151856 Msa1110350:CDS
GTGGGGCTTACTGAGAAAAC+GGG 0.474683 7_3:-55151517 None:intergenic
AGTGGGGCTTACTGAGAAAA+CGG 0.475773 7_3:-55151518 None:intergenic
GTCCCGCTCTTTGTAAATAT+AGG 0.478856 7_3:+55156102 Msa1110350:CDS
AAGGTAGTCGATGTGGATCC+GGG 0.490283 7_3:+55155502 Msa1110350:CDS
GTCTGGATGAATCAGAAGTT+GGG 0.495506 7_3:+55154698 Msa1110350:CDS
CTTCATGTGAAACCTGGAAA+AGG 0.505634 7_3:+55151776 Msa1110350:CDS
CGCCTATATTTACAAAGAGC+GGG 0.509532 7_3:-55156104 None:intergenic
TGCAATTTGCTGTTATGGAA+TGG 0.524366 7_3:+55154754 Msa1110350:CDS
TACATACGAGGAGACTCGTC+TGG 0.525138 7_3:+55154681 Msa1110350:CDS
ATAGGAGAGATTGAGCTTCA+AGG 0.529166 7_3:-55151430 None:intergenic
GGTATGAAGAAGAAGATTTG+CGG 0.536049 7_3:-55151461 None:intergenic
AAAACAAAGTGGCTGAAAGA+AGG 0.539823 7_3:+55154724 Msa1110350:CDS
GAGTTTCTTCATGTGAAACC+TGG 0.542138 7_3:+55151770 Msa1110350:intron
GTTTCTAGTCTAGAGGATAA+GGG 0.555035 7_3:-55151351 None:intergenic
AAACAGTTCACATATAAAGA+TGG 0.561471 7_3:+55154418 Msa1110350:CDS
TACCGAACTTCCAGCTCTGA+AGG 0.565488 7_3:-55151858 None:intergenic
GTTGAAAAGACCTTCAGAGC+TGG 0.566337 7_3:+55151848 Msa1110350:CDS
CGACAACACAACATGATAGC+GGG 0.571198 7_3:+55151399 Msa1110350:exon
TGAGAAAACGGGGATTAGAA+GGG 0.572553 7_3:-55151506 None:intergenic
AAAGTGGCTGAAAGAAGGAA+TGG 0.581341 7_3:+55154729 Msa1110350:CDS
TCGCCTATATTTACAAAGAG+CGG 0.586804 7_3:-55156105 None:intergenic
GGCATTATTCATCATGATTG+TGG 0.587553 7_3:+55156349 Msa1110350:three_prime_UTR
GCTGTGTCACCCTTAAGTCC+CGG 0.588592 7_3:-55155520 None:intergenic
TACTGGTTGATACAAGATCT+GGG 0.592937 7_3:+55156133 Msa1110350:CDS
TTGATATGAAATCTTAAGCA+CGG 0.595292 7_3:-55156167 None:intergenic
GGTGCGAATAGGAAAGTTGG+AGG 0.597541 7_3:-55151484 None:intergenic
TGCGAATAGGAAAGTTGGAG+GGG 0.600775 7_3:-55151482 None:intergenic
AAGCCAGCAACTCTCGACAC+TGG 0.613570 7_3:+55156066 Msa1110350:CDS
TAACTTTAGTTGCGAAACTG+AGG 0.615321 7_3:+55156319 Msa1110350:three_prime_UTR
GTGCGAATAGGAAAGTTGGA+GGG 0.615958 7_3:-55151483 None:intergenic
ATCATGATGAATAATGCCGC+AGG 0.616116 7_3:-55156344 None:intergenic
TGATGAAGCTGATATAGTCA+AGG 0.622649 7_3:+55154390 Msa1110350:CDS
CAAGCTTAAGGTAGTCGATG+TGG 0.633779 7_3:+55155495 Msa1110350:CDS
TTGCGAAACTGAGGCTCCTG+CGG 0.644437 7_3:+55156328 Msa1110350:three_prime_UTR
GAGAAAACGGGGATTAGAAG+GGG 0.646810 7_3:-55151505 None:intergenic
GTATTACCTAAGACACGCCA+AGG 0.651100 7_3:-55151671 None:intergenic
TCGAAGTTGATGGTTCACCT+TGG 0.655283 7_3:+55151654 Msa1110350:CDS
GAAAAGGTGCTGCATTTGTG+AGG 0.657241 7_3:+55151792 Msa1110350:CDS
CTTAAGGGTGACACAGCCCA+AGG 0.664333 7_3:+55155526 Msa1110350:CDS
ACGACAACACAACATGATAG+CGG 0.677593 7_3:+55151398 Msa1110350:exon
GCTCTTTGTAAATATAGGCG+AGG 0.683752 7_3:+55156107 Msa1110350:CDS
AAGTTGGGAACAAAACAAAG+TGG 0.698694 7_3:+55154713 Msa1110350:CDS
ATACTATCAGAGTACATACG+AGG 0.738653 7_3:+55154669 Msa1110350:intron
TGGGGCTTACTGAGAAAACG+GGG 0.761195 7_3:-55151516 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTATTAGATTCTTTT+TGG + chr7_3:55152132-55152151 Msa1110350:intron 10.0%
!!! ATTTTTATTAGATTCTTTTT+GGG + chr7_3:55152133-55152152 Msa1110350:intron 10.0%
!! CTTAGTAAAAAAAAAAAAAA+GGG - chr7_3:55152208-55152227 None:intergenic 10.0%
!! TCTTAGTAAAAAAAAAAAAA+AGG - chr7_3:55152209-55152228 None:intergenic 10.0%
!!! ATTTTGAATTAAATTGATTT+AGG + chr7_3:55152362-55152381 Msa1110350:intron 10.0%
!!! TTTTGAATTAAATTGATTTA+GGG + chr7_3:55152363-55152382 Msa1110350:intron 10.0%
!! AATTAGATTATGTATAATTA+AGG - chr7_3:55154490-55154509 None:intergenic 10.0%
!! TAACAAAGTAAAAAATTAAA+GGG - chr7_3:55154644-55154663 None:intergenic 10.0%
!! TTAACAAAGTAAAAAATTAA+AGG - chr7_3:55154645-55154664 None:intergenic 10.0%
!! TTAGTAAAATAAAAAACTAT+GGG - chr7_3:55155039-55155058 None:intergenic 10.0%
!! ATTAGTAAAATAAAAAACTA+TGG - chr7_3:55155040-55155059 None:intergenic 10.0%
!! ATAAATATAAAAGCTAAAAA+AGG + chr7_3:55155764-55155783 Msa1110350:intron 10.0%
!!! TTACAAAACAGTAATTTTTT+AGG - chr7_3:55154064-55154083 None:intergenic 15.0%
!! TAATAAATTATGAGATGAAA+AGG - chr7_3:55154788-55154807 None:intergenic 15.0%
!! AAATAAAATTACAACAAGAA+CGG - chr7_3:55155342-55155361 None:intergenic 15.0%
!! TTAAACATAAAATTTAAGGA+TGG + chr7_3:55155361-55155380 Msa1110350:intron 15.0%
!!! AATTTTATTTAAGCTTCAAT+AGG - chr7_3:55155416-55155435 None:intergenic 15.0%
!!! ATAATGAGTACTGATTAAAA+TGG + chr7_3:55151732-55151751 Msa1110350:intron 20.0%
!! AAAAGATTTCAGAAAAACTA+GGG - chr7_3:55151889-55151908 None:intergenic 20.0%
!! AAAAAGATTTCAGAAAAACT+AGG - chr7_3:55151890-55151909 None:intergenic 20.0%
!!! ATAGAAAATAATCTTTTTGC+TGG + chr7_3:55152542-55152561 Msa1110350:intron 20.0%
!! TCTAAAAAATTTAGCTATGT+CGG - chr7_3:55153431-55153450 None:intergenic 20.0%
!! TTCAATGTAATTATATGTGT+CGG + chr7_3:55153462-55153481 Msa1110350:intron 20.0%
!! CATCATTTCTTGAAAAATAT+AGG + chr7_3:55153590-55153609 Msa1110350:intron 20.0%
!! ATATAGGATACAATATGTTT+AGG + chr7_3:55153606-55153625 Msa1110350:intron 20.0%
!! CAATTAATAAGTAGGAATAA+GGG + chr7_3:55153743-55153762 Msa1110350:intron 20.0%
!! AAGTAAAAAATTAAAGGGTA+TGG - chr7_3:55154639-55154658 None:intergenic 20.0%
!! ATATTCATTATCATCAATAC+TGG - chr7_3:55154846-55154865 None:intergenic 20.0%
!!! AGTATTGATGATAATGAATA+TGG + chr7_3:55154845-55154864 Msa1110350:intron 20.0%
!!! GTATTGATGATAATGAATAT+GGG + chr7_3:55154846-55154865 Msa1110350:intron 20.0%
!! TGTATTCTTGTAATAGTTAA+TGG + chr7_3:55155215-55155234 Msa1110350:intron 20.0%
!! AAATTAGCAGTATAAGAAAA+TGG - chr7_3:55155557-55155576 None:intergenic 20.0%
!! ACTAAAATGATAAAGTTATC+TGG + chr7_3:55155642-55155661 Msa1110350:intron 20.0%
!! AATTGTGAAATATGCATTTA+GGG - chr7_3:55155679-55155698 None:intergenic 20.0%
!! AAATTGTGAAATATGCATTT+AGG - chr7_3:55155680-55155699 None:intergenic 20.0%
!! TAAATGCATATTTCACAATT+TGG + chr7_3:55155679-55155698 Msa1110350:intron 20.0%
!! AATTTGGCATTAAAAAAACA+AGG + chr7_3:55155695-55155714 Msa1110350:intron 20.0%
!! ATTTGGCATTAAAAAAACAA+GGG + chr7_3:55155696-55155715 Msa1110350:intron 20.0%
! TTAGTGAAAATATGAAAGTG+GGG - chr7_3:55151537-55151556 None:intergenic 25.0%
! GTTAGTGAAAATATGAAAGT+GGG - chr7_3:55151538-55151557 None:intergenic 25.0%
! TCTAGTAATGACATTAAAGT+TGG + chr7_3:55151623-55151642 Msa1110350:CDS 25.0%
! ATATTCCTTCTTACAAATCA+TGG - chr7_3:55152055-55152074 None:intergenic 25.0%
! GAATTTACTATGAAATTGCT+TGG + chr7_3:55152075-55152094 Msa1110350:intron 25.0%
!! TGAAGTCAATTTGATGATTA+AGG + chr7_3:55152108-55152127 Msa1110350:intron 25.0%
!!! ATTAGATTCTTTTTGGGAAT+AGG + chr7_3:55152139-55152158 Msa1110350:intron 25.0%
!!! TTAGATTCTTTTTGGGAATA+GGG + chr7_3:55152140-55152159 Msa1110350:intron 25.0%
! CTGGTATTTATATAGCAAAA+AGG - chr7_3:55152459-55152478 None:intergenic 25.0%
!!! TAGTTTTTTACAAAGCAAGA+GGG - chr7_3:55152522-55152541 None:intergenic 25.0%
!!! TTAGTTTTTTACAAAGCAAG+AGG - chr7_3:55152523-55152542 None:intergenic 25.0%
!! AAAATAATCTTTTTGCTGGT+GGG + chr7_3:55152546-55152565 Msa1110350:intron 25.0%
!! TTAGTGAAAATAGAGGTTTT+TGG - chr7_3:55152806-55152825 None:intergenic 25.0%
!! TCATCTTTTAGTGAAAATAG+AGG - chr7_3:55152813-55152832 None:intergenic 25.0%
!! TTAGCAAGCTTTAGTAATAT+AGG + chr7_3:55153009-55153028 Msa1110350:intron 25.0%
!! AATTCTAATTTGTGAATGTG+TGG - chr7_3:55153049-55153068 None:intergenic 25.0%
! CATCATACTTGTATAACAAA+CGG - chr7_3:55153261-55153280 None:intergenic 25.0%
! AAGTGATGAAAGTTTGAATA+TGG + chr7_3:55153681-55153700 Msa1110350:intron 25.0%
! AGTGATGAAAGTTTGAATAT+GGG + chr7_3:55153682-55153701 Msa1110350:intron 25.0%
! GCAATTAATAAGTAGGAATA+AGG + chr7_3:55153742-55153761 Msa1110350:intron 25.0%
! ATTTGTCACAATTAATGAGT+GGG + chr7_3:55153805-55153824 Msa1110350:intron 25.0%
! TTCAACATAAATTATGTACC+TGG + chr7_3:55153838-55153857 Msa1110350:intron 25.0%
! TCAACATAAATTATGTACCT+GGG + chr7_3:55153839-55153858 Msa1110350:intron 25.0%
! TCAAAAAGACAAATTCTTTC+GGG - chr7_3:55154108-55154127 None:intergenic 25.0%
! CTCAAAAAGACAAATTCTTT+CGG - chr7_3:55154109-55154128 None:intergenic 25.0%
!!! AAGAGTTTTTAGTGATGTTA+TGG + chr7_3:55154247-55154266 Msa1110350:intron 25.0%
!! TGTTGCTTCTAATTTCTTAT+TGG + chr7_3:55154316-55154335 Msa1110350:intron 25.0%
! GTTGCTTCTAATTTCTTATT+GGG + chr7_3:55154317-55154336 Msa1110350:intron 25.0%
! AAACAGTTCACATATAAAGA+TGG + chr7_3:55154418-55154437 Msa1110350:CDS 25.0%
! AATTGTTGGAATAGAGAATT+TGG - chr7_3:55154602-55154621 None:intergenic 25.0%
! ATTGTTATACGAGTAAATCA+GGG + chr7_3:55154926-55154945 Msa1110350:intron 25.0%
!! AACTATGAATCAATGCTTTT+GGG - chr7_3:55154979-55154998 None:intergenic 25.0%
!! TACTAATCTGAAATGTTGAA+TGG + chr7_3:55155053-55155072 Msa1110350:intron 25.0%
!!! ACAGTTTTATATACATGCTT+TGG + chr7_3:55155077-55155096 Msa1110350:intron 25.0%
!!! CAGTTTTATATACATGCTTT+GGG + chr7_3:55155078-55155097 Msa1110350:intron 25.0%
!!! AGTTTTATATACATGCTTTG+GGG + chr7_3:55155079-55155098 Msa1110350:intron 25.0%
!! ACTTGTCTGTTTATATTTTC+AGG + chr7_3:55155444-55155463 Msa1110350:intron 25.0%
!!! AGGTTTTATCAGCTAATAAT+TGG + chr7_3:55155737-55155756 Msa1110350:intron 25.0%
! TGACATTCAATATATCTAAG+AGG - chr7_3:55155903-55155922 None:intergenic 25.0%
! TTGATATGAAATCTTAAGCA+CGG - chr7_3:55156170-55156189 None:intergenic 25.0%
!!! AATTTTTTTGCAGTCTTCAA+TGG + chr7_3:55156397-55156416 Msa1110350:three_prime_UTR 25.0%
!! AAAAATGGTTTCTAGTCTAG+AGG - chr7_3:55151361-55151380 None:intergenic 30.0%
! GTTTTCTTACTGCAGAAAAA+TGG - chr7_3:55151376-55151395 None:intergenic 30.0%
GGTTAGTGAAAATATGAAAG+TGG - chr7_3:55151539-55151558 None:intergenic 30.0%
GAGATTAGTGGAATTAAGAA+GGG - chr7_3:55151575-55151594 None:intergenic 30.0%
AGAGATTAGTGGAATTAAGA+AGG - chr7_3:55151576-55151595 None:intergenic 30.0%
GAAAACAACAAAGAGATTAG+TGG - chr7_3:55151587-55151606 None:intergenic 30.0%
AAGCTTAAGAATCATCTTAC+TGG + chr7_3:55151818-55151837 Msa1110350:CDS 30.0%
! TTCTTTTTACTGTGTTGCAT+TGG + chr7_3:55151908-55151927 Msa1110350:intron 30.0%
GAATGTTAAGAATCTCACAT+CGG + chr7_3:55151947-55151966 Msa1110350:intron 30.0%
AGTCTGACAATGTTTATAAG+TGG + chr7_3:55151979-55151998 Msa1110350:intron 30.0%
GTCTGACAATGTTTATAAGT+GGG + chr7_3:55151980-55151999 Msa1110350:intron 30.0%
!! TAGATTCTTTTTGGGAATAG+GGG + chr7_3:55152141-55152160 Msa1110350:intron 30.0%
GAAAAAACATGATTGAGTGT+CGG + chr7_3:55152231-55152250 Msa1110350:intron 30.0%
! TATTATTCAATTGCGGATTG+TGG + chr7_3:55152254-55152273 Msa1110350:intron 30.0%
ACACTATAGGATAGCAAAAT+TGG - chr7_3:55152296-55152315 None:intergenic 30.0%
!!! CCTCTCTCAAAGTTTTATTT+AGG - chr7_3:55152410-55152429 None:intergenic 30.0%
! CCTAAATAAAACTTTGAGAG+AGG + chr7_3:55152407-55152426 Msa1110350:intron 30.0%
! AATAAAACTTTGAGAGAGGT+TGG + chr7_3:55152411-55152430 Msa1110350:intron 30.0%
! GAAAATAATCTTTTTGCTGG+TGG + chr7_3:55152545-55152564 Msa1110350:intron 30.0%
AGGTGAAATGGTTTATGTTT+GGG + chr7_3:55152631-55152650 Msa1110350:intron 30.0%
! GTTAATTTTCTGACTCAATG+TGG + chr7_3:55152692-55152711 Msa1110350:intron 30.0%
GACAAGGAAATCTAAATGTT+TGG - chr7_3:55152908-55152927 None:intergenic 30.0%
TGAAAAACGAAGTATAACAC+AGG - chr7_3:55152945-55152964 None:intergenic 30.0%
! TTAGTAATATAGGTGTCACA+TGG + chr7_3:55153019-55153038 Msa1110350:intron 30.0%
TAGAATGGAAACAGATTGTT+GGG + chr7_3:55153200-55153219 Msa1110350:intron 30.0%
AAGTATGATGCAACATAGTT+TGG + chr7_3:55153271-55153290 Msa1110350:intron 30.0%
GTGTACTTGCATTATAGTTT+AGG - chr7_3:55153329-55153348 None:intergenic 30.0%
GATGATATAAATTGCATCTG+TGG + chr7_3:55153720-55153739 Msa1110350:intron 30.0%
ATCTGTGGCAATTAATAAGT+AGG + chr7_3:55153735-55153754 Msa1110350:intron 30.0%
CATTTGTCACAATTAATGAG+TGG + chr7_3:55153804-55153823 Msa1110350:intron 30.0%
!!! CATCTGACTCTTCTTTTTTA+TGG - chr7_3:55153879-55153898 None:intergenic 30.0%
AAAAAGACAAATTCTTTCGG+GGG - chr7_3:55154106-55154125 None:intergenic 30.0%
CAAAAAGACAAATTCTTTCG+GGG - chr7_3:55154107-55154126 None:intergenic 30.0%
! CGAAAGAATTTGTCTTTTTG+AGG + chr7_3:55154107-55154126 Msa1110350:intron 30.0%
ATCTAACTCATTTATGTGAG+TGG + chr7_3:55154223-55154242 Msa1110350:intron 30.0%
AGACAAGATAACAACAGAAA+AGG - chr7_3:55154348-55154367 None:intergenic 30.0%
GTAACTTCTCATTATGATCA+AGG - chr7_3:55154561-55154580 None:intergenic 30.0%
! AGTTACTAGTTAGCCTAATT+AGG + chr7_3:55154575-55154594 Msa1110350:intron 30.0%
TAGAGAATTTGGACCTAATT+AGG - chr7_3:55154591-55154610 None:intergenic 30.0%
ACTGAAAGCAAAAGAATTGT+TGG - chr7_3:55154616-55154635 None:intergenic 30.0%
CCTAGAAAATAAAGGTTTGA+GGG - chr7_3:55154823-55154842 None:intergenic 30.0%
! AATACTGGCCTAGAAAATAA+AGG - chr7_3:55154831-55154850 None:intergenic 30.0%
GATTGTTATACGAGTAAATC+AGG + chr7_3:55154925-55154944 Msa1110350:intron 30.0%
TTGTTATACGAGTAAATCAG+GGG + chr7_3:55154927-55154946 Msa1110350:intron 30.0%
! CAACTATGAATCAATGCTTT+TGG - chr7_3:55154980-55154999 None:intergenic 30.0%
TAAAACACCATTTGGGAAAA+AGG - chr7_3:55155142-55155161 None:intergenic 30.0%
GATACAGCATTAATCACTTA+AGG - chr7_3:55155320-55155339 None:intergenic 30.0%
! GAACTTTTGTGATTCTATAC+AGG - chr7_3:55155614-55155633 None:intergenic 30.0%
ATATTGAATGTCAAGAGAGT+AGG + chr7_3:55155910-55155929 Msa1110350:intron 30.0%
TGTAAATGGAATATGATTGC+AGG + chr7_3:55156033-55156052 Msa1110350:intron 30.0%
ACTGCAAAAAAATTATGACG+AGG - chr7_3:55156391-55156410 None:intergenic 30.0%
!! GTTTCTAGTCTAGAGGATAA+GGG - chr7_3:55151354-55151373 None:intergenic 35.0%
GGTATGAAGAAGAAGATTTG+CGG - chr7_3:55151464-55151483 None:intergenic 35.0%
ATTAGTGGAATTAAGAAGGG+TGG - chr7_3:55151572-55151591 None:intergenic 35.0%
GGTACTAATATCGAAGTTGA+TGG + chr7_3:55151644-55151663 Msa1110350:CDS 35.0%
! CATTGGTTACTAGTAGATGA+AGG + chr7_3:55151925-55151944 Msa1110350:intron 35.0%
TTAAGAATCTCACATCGGAT+AGG + chr7_3:55151952-55151971 Msa1110350:intron 35.0%
CCTTCTTACAAATCATGGTT+GGG - chr7_3:55152050-55152069 None:intergenic 35.0%
TCCTTCTTACAAATCATGGT+TGG - chr7_3:55152051-55152070 None:intergenic 35.0%
! GTGTCGGTATTATTCAATTG+CGG + chr7_3:55152247-55152266 Msa1110350:intron 35.0%
TCACCAATGTTGTCAAATAG+CGG - chr7_3:55152326-55152345 None:intergenic 35.0%
AAATACCAGTGTGTGCTTTA+AGG + chr7_3:55152470-55152489 Msa1110350:intron 35.0%
TTTAGTTGCGATTGAGTTTG+AGG + chr7_3:55152611-55152630 Msa1110350:intron 35.0%
GAGGTGAAATGGTTTATGTT+TGG + chr7_3:55152630-55152649 Msa1110350:intron 35.0%
!! TAGAGGTTTTTGGATATCGT+CGG - chr7_3:55152796-55152815 None:intergenic 35.0%
AGGTTTCATTTCATGGTTGA+AGG - chr7_3:55152860-55152879 None:intergenic 35.0%
TGCTACCACCATAAAAAAAG+GGG - chr7_3:55152984-55153003 None:intergenic 35.0%
GTGCTACCACCATAAAAAAA+GGG - chr7_3:55152985-55153004 None:intergenic 35.0%
AGTGCTACCACCATAAAAAA+AGG - chr7_3:55152986-55153005 None:intergenic 35.0%
TTACCTGTTCATATTCACTC+TGG + chr7_3:55153069-55153088 Msa1110350:intron 35.0%
CATTCTACCTCCACAAATTA+GGG - chr7_3:55153187-55153206 None:intergenic 35.0%
GTAGAATGGAAACAGATTGT+TGG + chr7_3:55153199-55153218 Msa1110350:intron 35.0%
TATGATGCAACATAGTTTGG+AGG + chr7_3:55153274-55153293 Msa1110350:intron 35.0%
CAGATACTATCTATGAAGCA+CGG + chr7_3:55153360-55153379 Msa1110350:intron 35.0%
GTATAGTATCCTATGAAGCA+CGG - chr7_3:55153552-55153571 None:intergenic 35.0%
! GAAATGATGTGTCGTTGTAT+TGG - chr7_3:55153579-55153598 None:intergenic 35.0%
ATATGGGAGGATAAATGAAC+TGG + chr7_3:55154026-55154045 Msa1110350:intron 35.0%
AAAAGACAAATTCTTTCGGG+GGG - chr7_3:55154105-55154124 None:intergenic 35.0%
TAGCAATCCACAAGAAAACA+GGG - chr7_3:55154198-55154217 None:intergenic 35.0%
TTAGCAATCCACAAGAAAAC+AGG - chr7_3:55154199-55154218 None:intergenic 35.0%
AGCTTCATCAATCTGTCAAA+AGG - chr7_3:55154380-55154399 None:intergenic 35.0%
TGATGAAGCTGATATAGTCA+AGG + chr7_3:55154390-55154409 Msa1110350:CDS 35.0%
TGGTGTTCAATTTGTCTTCA+TGG + chr7_3:55154438-55154457 Msa1110350:CDS 35.0%
TCAATTTGTCTTCATGGACT+TGG + chr7_3:55154444-55154463 Msa1110350:CDS 35.0%
CATTATGATCAAGGACTGAT+AGG - chr7_3:55154552-55154571 None:intergenic 35.0%
ATACTATCAGAGTACATACG+AGG + chr7_3:55154669-55154688 Msa1110350:intron 35.0%
AAGTTGGGAACAAAACAAAG+TGG + chr7_3:55154713-55154732 Msa1110350:CDS 35.0%
AAAACAAAGTGGCTGAAAGA+AGG + chr7_3:55154724-55154743 Msa1110350:CDS 35.0%
!! TGCAATTTGCTGTTATGGAA+TGG + chr7_3:55154754-55154773 Msa1110350:CDS 35.0%
!!! CCCTCAAACCTTTATTTTCT+AGG + chr7_3:55154820-55154839 Msa1110350:intron 35.0%
GCCTAGAAAATAAAGGTTTG+AGG - chr7_3:55154824-55154843 None:intergenic 35.0%
! GAGTATTCCTTTTTCCCAAA+TGG + chr7_3:55155132-55155151 Msa1110350:intron 35.0%
GCACTAGTAAAACACCATTT+GGG - chr7_3:55155149-55155168 None:intergenic 35.0%
AGCACTAGTAAAACACCATT+TGG - chr7_3:55155150-55155169 None:intergenic 35.0%
!! TCAAAGCATTGACAAGTACA+AGG + chr7_3:55155192-55155211 Msa1110350:intron 35.0%
CCTTAAGCTTGACTGTTATA+GGG - chr7_3:55155486-55155505 None:intergenic 35.0%
ACCTTAAGCTTGACTGTTAT+AGG - chr7_3:55155487-55155506 None:intergenic 35.0%
TAAGAAAATGGCATCACCTT+GGG - chr7_3:55155545-55155564 None:intergenic 35.0%
ATAAGAAAATGGCATCACCT+TGG - chr7_3:55155546-55155565 None:intergenic 35.0%
TTTGTGATTCTATACAGGAC+TGG - chr7_3:55155609-55155628 None:intergenic 35.0%
AAGCTAAAAAAGGACAACCT+AGG + chr7_3:55155774-55155793 Msa1110350:intron 35.0%
AGCTAAAAAAGGACAACCTA+GGG + chr7_3:55155775-55155794 Msa1110350:intron 35.0%
CAAGGTAAAGTTACCAACAA+TGG - chr7_3:55155856-55155875 None:intergenic 35.0%
! GGGCAATAAAAAAGCACAAT+AGG - chr7_3:55155984-55156003 None:intergenic 35.0%
CTTGCAGAACTAACTGTAAA+TGG + chr7_3:55156019-55156038 Msa1110350:intron 35.0%
AAATGGAATATGATTGCAGG+TGG + chr7_3:55156036-55156055 Msa1110350:intron 35.0%
TCGCCTATATTTACAAAGAG+CGG - chr7_3:55156108-55156127 None:intergenic 35.0%
AAATATAGGCGAGGAAATAC+TGG + chr7_3:55156116-55156135 Msa1110350:CDS 35.0%
! ATACTGGTTGATACAAGATC+TGG + chr7_3:55156132-55156151 Msa1110350:CDS 35.0%
! TACTGGTTGATACAAGATCT+GGG + chr7_3:55156133-55156152 Msa1110350:CDS 35.0%
TAACTTTAGTTGCGAAACTG+AGG + chr7_3:55156319-55156338 Msa1110350:three_prime_UTR 35.0%
GGCATTATTCATCATGATTG+TGG + chr7_3:55156349-55156368 Msa1110350:three_prime_UTR 35.0%
!! GGTTTCTAGTCTAGAGGATA+AGG - chr7_3:55151355-55151374 None:intergenic 40.0%
ACGACAACACAACATGATAG+CGG + chr7_3:55151398-55151417 Msa1110350:exon 40.0%
ATAGGAGAGATTGAGCTTCA+AGG - chr7_3:55151433-55151452 None:intergenic 40.0%
AGATTTGCGGAGAGAGAAAT+AGG - chr7_3:55151451-55151470 None:intergenic 40.0%
TGAGAAAACGGGGATTAGAA+GGG - chr7_3:55151509-55151528 None:intergenic 40.0%
GAGTTTCTTCATGTGAAACC+TGG + chr7_3:55151770-55151789 Msa1110350:intron 40.0%
CTTCATGTGAAACCTGGAAA+AGG + chr7_3:55151776-55151795 Msa1110350:CDS 40.0%
!!! AACTCACAAGCCGGTTTTTT+GGG + chr7_3:55152013-55152032 Msa1110350:intron 40.0%
CTAACACAACCCCAAAAAAC+CGG - chr7_3:55152026-55152045 None:intergenic 40.0%
! CCCAACCATGATTTGTAAGA+AGG + chr7_3:55152047-55152066 Msa1110350:intron 40.0%
!! TTTTTGGGAATAGGGGTAGA+GGG + chr7_3:55152148-55152167 Msa1110350:intron 40.0%
! CAATTGCGGATTGTGGAAAA+TGG + chr7_3:55152261-55152280 Msa1110350:intron 40.0%
TAGCGGCACTAAAACACTAT+AGG - chr7_3:55152309-55152328 None:intergenic 40.0%
CATTGGTGAGCGTTTGATAA+AGG + chr7_3:55152337-55152356 Msa1110350:intron 40.0%
GCAGTAAAAGCCCTTACTTT+AGG - chr7_3:55152572-55152591 None:intergenic 40.0%
! AAAGTAAGGGCTTTTACTGC+TGG + chr7_3:55152572-55152591 Msa1110350:intron 40.0%
! AAGTAAGGGCTTTTACTGCT+GGG + chr7_3:55152573-55152592 Msa1110350:intron 40.0%
! CGATTGAGTTTGAGGTGAAA+TGG + chr7_3:55152619-55152638 Msa1110350:intron 40.0%
!! AGAGGTTTTTGGATATCGTC+GGG - chr7_3:55152795-55152814 None:intergenic 40.0%
GTGTGTCAGGTTTCATTTCA+TGG - chr7_3:55152867-55152886 None:intergenic 40.0%
ATGAAACCTGACACACATTG+AGG + chr7_3:55152871-55152890 Msa1110350:intron 40.0%
! AATTAGCCTCAATGTGTGTC+AGG - chr7_3:55152880-55152899 None:intergenic 40.0%
TGACACACATTGAGGCTAAT+TGG + chr7_3:55152879-55152898 Msa1110350:intron 40.0%
!! TTCGTTTTTCATCTCGCAAC+CGG + chr7_3:55152954-55152973 Msa1110350:intron 40.0%
CCATAAAAAAAGGGGGTTTC+CGG - chr7_3:55152976-55152995 None:intergenic 40.0%
!!! GAAACCCCCTTTTTTTATGG+TGG + chr7_3:55152976-55152995 Msa1110350:intron 40.0%
GCTACCACCATAAAAAAAGG+GGG - chr7_3:55152983-55153002 None:intergenic 40.0%
TCTCCAGAGTGAATATGAAC+AGG - chr7_3:55153075-55153094 None:intergenic 40.0%
TTGCATCATACCTACCTTCA+TGG + chr7_3:55153144-55153163 Msa1110350:intron 40.0%
TGCATCATACCTACCTTCAT+GGG + chr7_3:55153145-55153164 Msa1110350:intron 40.0%
CCATTCTACCTCCACAAATT+AGG - chr7_3:55153188-55153207 None:intergenic 40.0%
! CCTAATTTGTGGAGGTAGAA+TGG + chr7_3:55153185-55153204 Msa1110350:intron 40.0%
CTCACCAGCAAATCTCAATT+AGG - chr7_3:55153226-55153245 None:intergenic 40.0%
!! AATTGAGATTTGCTGGTGAG+TGG + chr7_3:55153226-55153245 Msa1110350:intron 40.0%
CTATCTATGAAGCACGGATA+CGG + chr7_3:55153366-55153385 Msa1110350:intron 40.0%
ATTTAGCTATGTCGGCGTAT+CGG - chr7_3:55153423-55153442 None:intergenic 40.0%
TAAGGGAATTATGAGCTGAG+TGG + chr7_3:55153760-55153779 Msa1110350:intron 40.0%
AAGGGAATTATGAGCTGAGT+GGG + chr7_3:55153761-55153780 Msa1110350:intron 40.0%
! TGGCTTCACATTTTATTCCC+AGG - chr7_3:55153859-55153878 None:intergenic 40.0%
!! ATGTATTGACTGCATGCCAA+AGG + chr7_3:55153896-55153915 Msa1110350:intron 40.0%
ATACAGCATCAACATGCCTT+TGG - chr7_3:55153915-55153934 None:intergenic 40.0%
AGAACACATCGAGTACGATA+TGG + chr7_3:55154009-55154028 Msa1110350:intron 40.0%
GAACACATCGAGTACGATAT+GGG + chr7_3:55154010-55154029 Msa1110350:intron 40.0%
! AAAACCACCCTGTTTTCTTG+TGG + chr7_3:55154188-55154207 Msa1110350:intron 40.0%
! TTCATGGACTTGGTATCATC+TGG + chr7_3:55154454-55154473 Msa1110350:intron 40.0%
ACTTGGTATCATCTGGAAAC+TGG + chr7_3:55154461-55154480 Msa1110350:intron 40.0%
GTCTGGATGAATCAGAAGTT+GGG + chr7_3:55154698-55154717 Msa1110350:CDS 40.0%
AAAGTGGCTGAAAGAAGGAA+TGG + chr7_3:55154729-55154748 Msa1110350:CDS 40.0%
!! TGGACTGCAATTTGCTGTTA+TGG + chr7_3:55154749-55154768 Msa1110350:CDS 40.0%
CCCTATAACAGTCAAGCTTA+AGG + chr7_3:55155483-55155502 Msa1110350:CDS 40.0%
! TACCAACAATGGATTCACAG+TGG - chr7_3:55155845-55155864 None:intergenic 40.0%
GTTAGACTCTTACAAACGCA+AGG - chr7_3:55155874-55155893 None:intergenic 40.0%
GAATGTCAAGAGAGTAGGAT+CGG + chr7_3:55155915-55155934 Msa1110350:intron 40.0%
GCAAGTGAATGCAAGACAAA+GGG - chr7_3:55156004-55156023 None:intergenic 40.0%
TGCAAGTGAATGCAAGACAA+AGG - chr7_3:55156005-55156024 None:intergenic 40.0%
GTCCCGCTCTTTGTAAATAT+AGG + chr7_3:55156102-55156121 Msa1110350:CDS 40.0%
CGCCTATATTTACAAAGAGC+GGG - chr7_3:55156107-55156126 None:intergenic 40.0%
GCTCTTTGTAAATATAGGCG+AGG + chr7_3:55156107-55156126 Msa1110350:CDS 40.0%
ATCATGATGAATAATGCCGC+AGG - chr7_3:55156347-55156366 None:intergenic 40.0%
CGACAACACAACATGATAGC+GGG + chr7_3:55151399-55151418 Msa1110350:exon 45.0%
TGCGAATAGGAAAGTTGGAG+GGG - chr7_3:55151485-55151504 None:intergenic 45.0%
GTGCGAATAGGAAAGTTGGA+GGG - chr7_3:55151486-55151505 None:intergenic 45.0%
GAGAAAACGGGGATTAGAAG+GGG - chr7_3:55151508-55151527 None:intergenic 45.0%
CTGAGAAAACGGGGATTAGA+AGG - chr7_3:55151510-55151529 None:intergenic 45.0%
AGTGGGGCTTACTGAGAAAA+CGG - chr7_3:55151521-55151540 None:intergenic 45.0%
AAGAAGGGTGGTTAGAGAAG+AGG - chr7_3:55151560-55151579 None:intergenic 45.0%
!! TCGAAGTTGATGGTTCACCT+TGG + chr7_3:55151654-55151673 Msa1110350:CDS 45.0%
GTATTACCTAAGACACGCCA+AGG - chr7_3:55151674-55151693 None:intergenic 45.0%
! ACAAATGCAGCACCTTTTCC+AGG - chr7_3:55151791-55151810 None:intergenic 45.0%
!! GAAAAGGTGCTGCATTTGTG+AGG + chr7_3:55151792-55151811 Msa1110350:CDS 45.0%
GTTGAAAAGACCTTCAGAGC+TGG + chr7_3:55151848-55151867 Msa1110350:CDS 45.0%
!! AAAAACCGGCTTGTGAGTTG+AGG - chr7_3:55152012-55152031 None:intergenic 45.0%
!!! CAACTCACAAGCCGGTTTTT+TGG + chr7_3:55152012-55152031 Msa1110350:intron 45.0%
!!! ACTCACAAGCCGGTTTTTTG+GGG + chr7_3:55152014-55152033 Msa1110350:intron 45.0%
!!! CGGTTTTTTGGGGTTGTGTT+AGG + chr7_3:55152024-55152043 Msa1110350:intron 45.0%
!! CTTTTTGGGAATAGGGGTAG+AGG + chr7_3:55152147-55152166 Msa1110350:intron 45.0%
! TTGCGGATTGTGGAAAATGG+AGG + chr7_3:55152264-55152283 Msa1110350:intron 45.0%
! GTGCCGCTATTTGACAACAT+TGG + chr7_3:55152320-55152339 Msa1110350:intron 45.0%
GGTCACACATGTTAGCGAAA+AGG - chr7_3:55152438-55152457 None:intergenic 45.0%
!! ACCAGTGTGTGCTTTAAGGT+TGG + chr7_3:55152474-55152493 Msa1110350:intron 45.0%
!! CCAGTGTGTGCTTTAAGGTT+GGG + chr7_3:55152475-55152494 Msa1110350:intron 45.0%
GGTCACACATTCTGGCAAAA+AGG - chr7_3:55152501-55152520 None:intergenic 45.0%
ATAGTCAAACTGAGCGCCTA+AGG + chr7_3:55152755-55152774 Msa1110350:intron 45.0%
!! GGCAAAGTGGATTTTGCCTT+AGG - chr7_3:55152774-55152793 None:intergenic 45.0%
GGTTGAACAAGCAACTGACA+AGG - chr7_3:55152924-55152943 None:intergenic 45.0%
!!! CCGGAAACCCCCTTTTTTTA+TGG + chr7_3:55152973-55152992 Msa1110350:intron 45.0%
CTACCTCCACAAATTAGGGT+GGG - chr7_3:55153183-55153202 None:intergenic 45.0%
TCTACCTCCACAAATTAGGG+TGG - chr7_3:55153184-55153203 None:intergenic 45.0%
TGGGCCTAATTGAGATTTGC+TGG + chr7_3:55153219-55153238 Msa1110350:intron 45.0%
ATGAAGCACGGATACGGATA+CGG + chr7_3:55153372-55153391 Msa1110350:intron 45.0%
!! TATATGTGTCGGTGTCGTAC+CGG + chr7_3:55153473-55153492 Msa1110350:intron 45.0%
ATGTGTTCTGATACGCTGAC+AGG - chr7_3:55153998-55154017 None:intergenic 45.0%
CAATCCACAAGAAAACAGGG+TGG - chr7_3:55154195-55154214 None:intergenic 45.0%
CGTCTGGATGAATCAGAAGT+TGG + chr7_3:55154697-55154716 Msa1110350:CDS 45.0%
!! TTGCGTATGCATAGCTTGCT+AGG + chr7_3:55155285-55155304 Msa1110350:intron 45.0%
CAAGCTTAAGGTAGTCGATG+TGG + chr7_3:55155495-55155514 Msa1110350:CDS 45.0%
TAAGGTAGTCGATGTGGATC+CGG + chr7_3:55155501-55155520 Msa1110350:CDS 45.0%
TGGAATATGATTGCAGGTGG+TGG + chr7_3:55156039-55156058 Msa1110350:intron 45.0%
!!! TTTTTTTTCTATTTTTTAAA+AGG + chr7_3:55153951-55153970 Msa1110350:intron 5.0%
!!! TTTTTTTCTATTTTTTAAAA+GGG + chr7_3:55153952-55153971 Msa1110350:intron 5.0%
!!! TATTTTAAACATAAAATTTA+AGG + chr7_3:55155357-55155376 Msa1110350:intron 5.0%
GGTGCGAATAGGAAAGTTGG+AGG - chr7_3:55151487-55151506 None:intergenic 50.0%
! AGGGGTGCGAATAGGAAAGT+TGG - chr7_3:55151490-55151509 None:intergenic 50.0%
! GGATTAGAAGGGGTGCGAAT+AGG - chr7_3:55151498-55151517 None:intergenic 50.0%
TGGGGCTTACTGAGAAAACG+GGG - chr7_3:55151519-55151538 None:intergenic 50.0%
GTGGGGCTTACTGAGAAAAC+GGG - chr7_3:55151520-55151539 None:intergenic 50.0%
GACCTTCAGAGCTGGAAGTT+CGG + chr7_3:55151856-55151875 Msa1110350:CDS 50.0%
! TACCGAACTTCCAGCTCTGA+AGG - chr7_3:55151861-55151880 None:intergenic 50.0%
GCAATCCTCAACTCACAAGC+CGG + chr7_3:55152004-55152023 Msa1110350:intron 50.0%
CCCAACCTTAAAGCACACAC+TGG - chr7_3:55152478-55152497 None:intergenic 50.0%
AGCAAGAGGGTCACACATTC+TGG - chr7_3:55152509-55152528 None:intergenic 50.0%
! TTGCTGGTGGGCCTAAAGTA+AGG + chr7_3:55152558-55152577 Msa1110350:intron 50.0%
! TGCTGGTGGGCCTAAAGTAA+GGG + chr7_3:55152559-55152578 Msa1110350:intron 50.0%
TTGGATATCGTCGGGCAAAG+TGG - chr7_3:55152787-55152806 None:intergenic 50.0%
GGTTGTTTGCCCATGAAGGT+AGG - chr7_3:55153157-55153176 None:intergenic 50.0%
TCCACAAATTAGGGTGGGTC+GGG - chr7_3:55153178-55153197 None:intergenic 50.0%
CTCCACAAATTAGGGTGGGT+CGG - chr7_3:55153179-55153198 None:intergenic 50.0%
TATGAAGCACGGACACTCCT+CGG - chr7_3:55153541-55153560 None:intergenic 50.0%
!! GACAGGCATCGGTGAAGTAT+TGG - chr7_3:55153981-55154000 None:intergenic 50.0%
TCTGATACGCTGACAGGCAT+CGG - chr7_3:55153992-55154011 None:intergenic 50.0%
CACATCGAGTACGATATGGG+AGG + chr7_3:55154013-55154032 Msa1110350:intron 50.0%
GACAAATTCTTTCGGGGGGT+GGG - chr7_3:55154101-55154120 None:intergenic 50.0%
AGACAAATTCTTTCGGGGGG+TGG - chr7_3:55154102-55154121 None:intergenic 50.0%
TACATACGAGGAGACTCGTC+TGG + chr7_3:55154681-55154700 Msa1110350:CDS 50.0%
!! ATGCATAGCTTGCTAGGCAC+AGG + chr7_3:55155291-55155310 Msa1110350:intron 50.0%
!! TGCATAGCTTGCTAGGCACA+GGG + chr7_3:55155292-55155311 Msa1110350:intron 50.0%
AAGGTAGTCGATGTGGATCC+GGG + chr7_3:55155502-55155521 Msa1110350:CDS 50.0%
GATGTGGATCCGGGACTTAA+GGG + chr7_3:55155511-55155530 Msa1110350:CDS 50.0%
TTCTTGGATCCTGCCAAGGT+GGG - chr7_3:55155812-55155831 None:intergenic 50.0%
TTTCTTGGATCCTGCCAAGG+TGG - chr7_3:55155813-55155832 None:intergenic 50.0%
CTCTTTCTTGGATCCTGCCA+AGG - chr7_3:55155816-55155835 None:intergenic 50.0%
GGTTCACCTTGGCGTGTCTT+AGG + chr7_3:55151665-55151684 Msa1110350:CDS 55.0%
! GTCGGGTTGTTTGCCCATGA+AGG - chr7_3:55153161-55153180 None:intergenic 55.0%
ACCCGACCCACCCTAATTTG+TGG + chr7_3:55153174-55153193 Msa1110350:intron 55.0%
! CGACCCACCCTAATTTGTGG+AGG + chr7_3:55153177-55153196 Msa1110350:intron 55.0%
CACGGATACGGATACGGACA+CGG + chr7_3:55153378-55153397 Msa1110350:intron 55.0%
GTGTCTGACACGGGATGACA+CGG + chr7_3:55153502-55153521 Msa1110350:intron 55.0%
TGTCTGACACGGGATGACAC+GGG + chr7_3:55153503-55153522 Msa1110350:intron 55.0%
!! GAGGAGTGTCCGTGCTTCAT+AGG + chr7_3:55153540-55153559 Msa1110350:intron 55.0%
AATTCTTTCGGGGGGTGGGT+GGG - chr7_3:55154097-55154116 None:intergenic 55.0%
AAATTCTTTCGGGGGGTGGG+TGG - chr7_3:55154098-55154117 None:intergenic 55.0%
CGATGTGGATCCGGGACTTA+AGG + chr7_3:55155510-55155529 Msa1110350:CDS 55.0%
GCTGTGTCACCCTTAAGTCC+CGG - chr7_3:55155523-55155542 None:intergenic 55.0%
CTTAAGGGTGACACAGCCCA+AGG + chr7_3:55155526-55155545 Msa1110350:CDS 55.0%
GGAGTGCGAATCGTGCGAAT+AGG + chr7_3:55155717-55155736 Msa1110350:intron 55.0%
TCTTGGATCCTGCCAAGGTG+GGG - chr7_3:55155811-55155830 None:intergenic 55.0%
AAGCCAGCAACTCTCGACAC+TGG + chr7_3:55156066-55156085 Msa1110350:CDS 55.0%
TTGCGAAACTGAGGCTCCTG+CGG + chr7_3:55156328-55156347 Msa1110350:three_prime_UTR 55.0%
GACACGGACACGACACGACA+CGG + chr7_3:55153394-55153413 Msa1110350:intron 60.0%
CCGTGTCAGACACGTGTCAC+CGG - chr7_3:55153495-55153514 None:intergenic 60.0%
CCGGTGACACGTGTCTGACA+CGG + chr7_3:55153492-55153511 Msa1110350:intron 60.0%
CGGTGACACGTGTCTGACAC+GGG + chr7_3:55153493-55153512 Msa1110350:intron 60.0%
ACGGGAACACGCCTTATCCG+AGG + chr7_3:55153521-55153540 Msa1110350:intron 60.0%
GCACGGACACTCCTCGGATA+AGG - chr7_3:55153535-55153554 None:intergenic 60.0%
! GTGGGGGGGCTTTATACCCT+AGG - chr7_3:55155794-55155813 None:intergenic 60.0%
GGTATAAAGCCCCCCCACCT+TGG + chr7_3:55155796-55155815 Msa1110350:intron 60.0%
TTGGATCCTGCCAAGGTGGG+GGG - chr7_3:55155809-55155828 None:intergenic 60.0%
CTTGGATCCTGCCAAGGTGG+GGG - chr7_3:55155810-55155829 None:intergenic 60.0%
! GCACCAGTGTCGAGAGTTGC+TGG - chr7_3:55156072-55156091 None:intergenic 60.0%
TAAAGCCCCCCCACCTTGGC+AGG + chr7_3:55155800-55155819 Msa1110350:intron 65.0%
TGGATCCTGCCAAGGTGGGG+GGG - chr7_3:55155808-55155827 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 55151342 55156453 55151342 ID=Msa1110350;Name=Msa1110350
chr7_3 mRNA 55151342 55156453 55151342 ID=Msa1110350-mRNA-1;Parent=Msa1110350;Name=Msa1110350-mRNA-1;_AED=0.04;_eAED=0.04;_QI=69|1|1|1|1|1|7|277|228
chr7_3 exon 55151342 55151528 55151342 ID=Msa1110350-mRNA-1:exon:11582;Parent=Msa1110350-mRNA-1
chr7_3 exon 55151609 55151686 55151609 ID=Msa1110350-mRNA-1:exon:11583;Parent=Msa1110350-mRNA-1
chr7_3 exon 55151771 55151877 55151771 ID=Msa1110350-mRNA-1:exon:11584;Parent=Msa1110350-mRNA-1
chr7_3 exon 55154388 55154465 55154388 ID=Msa1110350-mRNA-1:exon:11585;Parent=Msa1110350-mRNA-1
chr7_3 exon 55154679 55154780 55154679 ID=Msa1110350-mRNA-1:exon:11586;Parent=Msa1110350-mRNA-1
chr7_3 exon 55155466 55155547 55155466 ID=Msa1110350-mRNA-1:exon:11587;Parent=Msa1110350-mRNA-1
chr7_3 exon 55156055 55156453 55156055 ID=Msa1110350-mRNA-1:exon:11588;Parent=Msa1110350-mRNA-1
chr7_3 five_prime_UTR 55151342 55151410 55151342 ID=Msa1110350-mRNA-1:five_prime_utr;Parent=Msa1110350-mRNA-1
chr7_3 CDS 55151411 55151528 55151411 ID=Msa1110350-mRNA-1:cds;Parent=Msa1110350-mRNA-1
chr7_3 CDS 55151609 55151686 55151609 ID=Msa1110350-mRNA-1:cds;Parent=Msa1110350-mRNA-1
chr7_3 CDS 55151771 55151877 55151771 ID=Msa1110350-mRNA-1:cds;Parent=Msa1110350-mRNA-1
chr7_3 CDS 55154388 55154465 55154388 ID=Msa1110350-mRNA-1:cds;Parent=Msa1110350-mRNA-1
chr7_3 CDS 55154679 55154780 55154679 ID=Msa1110350-mRNA-1:cds;Parent=Msa1110350-mRNA-1
chr7_3 CDS 55155466 55155547 55155466 ID=Msa1110350-mRNA-1:cds;Parent=Msa1110350-mRNA-1
chr7_3 CDS 55156055 55156176 55156055 ID=Msa1110350-mRNA-1:cds;Parent=Msa1110350-mRNA-1
chr7_3 three_prime_UTR 55156177 55156453 55156177 ID=Msa1110350-mRNA-1:three_prime_utr;Parent=Msa1110350-mRNA-1
Gene Sequence

>Msa1110350

ATGATAGCGGGAAGTGCTACCTTGAAGCTCAATCTCTCCTATTTCTCTCTCCGCAAATCTTCTTCTTCATACCCCTCCAACTTTCCTATTCGCACCCCTTCTAATCCCCGTTTTCTCAAGATTTATGCTATTTCTAGTAATGACATTAAAGTTGGTACTAATATCGAAGTTGATGGTTCACCTTGGCGTGTCTTAGAGTTTCTTCATGTGAAACCTGGAAAAGGTGCTGCATTTGTGAGGACTAAGCTTAAGAATCATCTTACTGGAAATACTGTTGAAAAGACCTTCAGAGCTGGAAGTTCGATTGATGAAGCTGATATAGTCAAGGAAACAAAACAGTTCACATATAAAGATGGTGTTCAATTTGTCTTCATGGACTTGAGTACATACGAGGAGACTCGTCTGGATGAATCAGAAGTTGGGAACAAAACAAAGTGGCTGAAAGAAGGAATGGACTGCAATTTGCTGTTATGGAATGGAAAAGTTATTGATGTTGATCTCCCTATAACAGTCAAGCTTAAGGTAGTCGATGTGGATCCGGGACTTAAGGGTGACACAGCCCAAGGTGGTGGATCAAAGCCAGCAACTCTCGACACTGGTGCTATTGTCAATGTCCCGCTCTTTGTAAATATAGGCGAGGAAATACTGGTTGATACAAGATCTGGGCAGTACATGAGCCGTGCTTAA

Protein sequence

>Msa1110350

MIAGSATLKLNLSYFSLRKSSSSYPSNFPIRTPSNPRFLKIYAISSNDIKVGTNIEVDGSPWRVLEFLHVKPGKGAAFVRTKLKNHLTGNTVEKTFRAGSSIDEADIVKETKQFTYKDGVQFVFMDLSTYEETRLDESEVGNKTKWLKEGMDCNLLLWNGKVIDVDLPITVKLKVVDVDPGLKGDTAQGGGSKPATLDTGAIVNVPLFVNIGEEILVDTRSGQYMSRA*