AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0109380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0109380 MtrunA17_Chr1g0166331 95.205 146 7 0 1 146 1 146 2.38e-100 284
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0109380 AT2G33450.1 73.381 139 26 4 15 146 9 143 3.12e-61 185

Find 45 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGATTGTAATTGAGTAAA+AGG 0.215746 1_3:+21292499 Msa0109380:three_prime_UTR
GGCCCTGTTTGATTTCTTTC+CGG 0.253338 1_3:-21292273 None:intergenic
GAGAAGAAGCAAATAAGATT+TGG 0.259195 1_3:+21290454 Msa0109380:five_prime_UTR
ACTGCAGTTTCTTTGTCTTA+TGG 0.268492 1_3:-21292316 None:intergenic
ATCAAGTCCATTCTTCTCTA+TGG 0.282588 1_3:-21292423 None:intergenic
AGAAGAAGCAAATAAGATTT+GGG 0.310834 1_3:+21290455 Msa0109380:five_prime_UTR
ATAAAATATTTGAAGGGCAG+TGG 0.404783 1_3:+21290412 None:intergenic
AAGAGAGTTTGGTGGGAAGC+TGG 0.407615 1_3:+21292356 Msa0109380:CDS
ACCTCCAGTACAAGAGAGTT+TGG 0.413996 1_3:+21292345 Msa0109380:CDS
CTAGCAACAATTGGTTGAAA+AGG 0.417846 1_3:-21290814 None:intergenic
CTTTGTCTTATGGTTTGAAA+AGG 0.427226 1_3:-21292306 None:intergenic
GTTTGAAAAGGATACTTTGT+TGG 0.430284 1_3:-21292294 None:intergenic
ATTCAAAGTCTTCATTATGA+AGG 0.438728 1_3:-21292671 None:intergenic
GTTTGATTTCTTTCCGGTGA+AGG 0.440508 1_3:-21292267 None:intergenic
AATAACTTACTAGCAACAAT+TGG 0.447154 1_3:-21290823 None:intergenic
TCACCGGAAAGAAATCAAAC+AGG 0.457839 1_3:+21292270 Msa0109380:CDS
AAAGCTTCGTTTGTCAACTA+AGG 0.463346 1_3:+21292391 Msa0109380:CDS
GAAGCAAATAAGATTTGGGT+TGG 0.471656 1_3:+21290459 Msa0109380:five_prime_UTR
TATGTCATGAATCTTACAAA+TGG 0.472969 1_3:+21292630 Msa0109380:three_prime_UTR
TTCTTGAGTTCTCAGTTAAG+TGG 0.484465 1_3:+21290736 Msa0109380:CDS
CCCACCAAACTCTCTTGTAC+TGG 0.486040 1_3:-21292349 None:intergenic
GTGGTCTCAGAATCTCTTCT+CGG 0.489874 1_3:+21290755 Msa0109380:CDS
TGAAAAGGAGAAGCAACAAT+TGG 0.492986 1_3:-21290799 None:intergenic
TTTGATTTCTTTCCGGTGAA+GGG 0.493506 1_3:-21292266 None:intergenic
TGAAGAGGGTTTGTGAGTGT+TGG 0.509301 1_3:-21290580 None:intergenic
TTCAAAGTCTTCATTATGAA+GGG 0.513570 1_3:-21292670 None:intergenic
AGAGAGTTTGGTGGGAAGCT+GGG 0.527154 1_3:+21292357 Msa0109380:CDS
TAAAATATTTGAAGGGCAGT+GGG 0.530789 1_3:+21290413 None:intergenic
TTGAAAACCATAGAGAAGAA+TGG 0.536514 1_3:+21292416 Msa0109380:CDS
GAGAGAGTGTGTCCCTTCAC+CGG 0.545165 1_3:+21292254 Msa0109380:intron
TTACGGGGTGAGAATGAAGA+GGG 0.545764 1_3:-21290594 None:intergenic
AAGAAAAGAAGAACAATGGC+GGG 0.549495 1_3:+21290498 Msa0109380:exon
GCGGGTTCTGCAGTATCACT+TGG 0.558417 1_3:+21290516 Msa0109380:CDS
CCAGTACAAGAGAGTTTGGT+GGG 0.583767 1_3:+21292349 Msa0109380:CDS
GTTACGGGGTGAGAATGAAG+AGG 0.589375 1_3:-21290595 None:intergenic
ACAGGAGTTGATTCTGACTA+CGG 0.589928 1_3:+21292584 Msa0109380:three_prime_UTR
ACCAAACTCTCTTGTACTGG+AGG 0.590235 1_3:-21292346 None:intergenic
TCAAAGTCTTCATTATGAAG+GGG 0.615498 1_3:-21292669 None:intergenic
GGAGAAGCAACAATTGGTGA+GGG 0.617414 1_3:-21290793 None:intergenic
AGGAGAAGCAACAATTGGTG+AGG 0.627644 1_3:-21290794 None:intergenic
AATATTTGAAGGGCAGTGGG+TGG 0.627955 1_3:+21290416 Msa0109380:five_prime_UTR
AAAGAAAAGAAGAACAATGG+CGG 0.635030 1_3:+21290497 Msa0109380:exon
TCCAGTACAAGAGAGTTTGG+TGG 0.651100 1_3:+21292348 Msa0109380:CDS
CACCGGAAAGAAATCAAACA+GGG 0.654830 1_3:+21292271 Msa0109380:CDS
GCGCATAGAAGCGAAGACGA+AGG 0.687146 1_3:-21290544 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATTTAAAATTGAAAATG+CGG - chr1_3:21290938-21290957 None:intergenic 10.0%
!! ATATTAAAAATGAAAAAGAT+CGG - chr1_3:21290970-21290989 None:intergenic 10.0%
!!! ATATTTTTCATATTTTATTG+CGG + chr1_3:21291718-21291737 Msa0109380:intron 10.0%
!! CAATAATAATAATAATAATC+AGG - chr1_3:21292193-21292212 None:intergenic 10.0%
!!! TTTCTTTATGTATTATTTTT+AGG + chr1_3:21292560-21292579 Msa0109380:three_prime_UTR 10.0%
!!! TTCTTTATGTATTATTTTTA+GGG + chr1_3:21292561-21292580 Msa0109380:three_prime_UTR 10.0%
!!! TAAATTTAAAATTGAAAATG+CGG - chr1_3:21290938-21290957 None:intergenic 10.0%
!! ATATTAAAAATGAAAAAGAT+CGG - chr1_3:21290970-21290989 None:intergenic 10.0%
!!! ATATTTTTCATATTTTATTG+CGG + chr1_3:21291718-21291737 Msa0109380:intron 10.0%
!! CAATAATAATAATAATAATC+AGG - chr1_3:21292193-21292212 None:intergenic 10.0%
!!! TTTCTTTATGTATTATTTTT+AGG + chr1_3:21292560-21292579 Msa0109380:three_prime_UTR 10.0%
!!! TTCTTTATGTATTATTTTTA+GGG + chr1_3:21292561-21292580 Msa0109380:three_prime_UTR 10.0%
!! TGAAAAATATCAGTAATTAT+TGG - chr1_3:21290873-21290892 None:intergenic 15.0%
!!! AAATTTAAAATTGAAAATGC+GGG - chr1_3:21290937-21290956 None:intergenic 15.0%
!!! CCATTTTTAAAAATTATTAC+CGG - chr1_3:21291127-21291146 None:intergenic 15.0%
!!! CGGTAATAATTTTTAAAAAT+GGG + chr1_3:21291125-21291144 Msa0109380:intron 15.0%
!!! TTGCTCTAATTTTAATAAAA+TGG + chr1_3:21291228-21291247 Msa0109380:intron 15.0%
!! CATATTGTTATGAAAATAAA+AGG - chr1_3:21291603-21291622 None:intergenic 15.0%
!!! CTTTTATTTTCATAACAATA+TGG + chr1_3:21291601-21291620 Msa0109380:intron 15.0%
!! CAAAAAAGAATTATTACTAT+AGG - chr1_3:21291824-21291843 None:intergenic 15.0%
!!! TCCATTAATTAATAAGTTTT+TGG + chr1_3:21292061-21292080 Msa0109380:intron 15.0%
!! TGAAAAATATCAGTAATTAT+TGG - chr1_3:21290873-21290892 None:intergenic 15.0%
!!! AAATTTAAAATTGAAAATGC+GGG - chr1_3:21290937-21290956 None:intergenic 15.0%
!!! CCATTTTTAAAAATTATTAC+CGG - chr1_3:21291127-21291146 None:intergenic 15.0%
!!! CGGTAATAATTTTTAAAAAT+GGG + chr1_3:21291125-21291144 Msa0109380:intron 15.0%
!!! TTGCTCTAATTTTAATAAAA+TGG + chr1_3:21291228-21291247 Msa0109380:intron 15.0%
!! CATATTGTTATGAAAATAAA+AGG - chr1_3:21291603-21291622 None:intergenic 15.0%
!!! CTTTTATTTTCATAACAATA+TGG + chr1_3:21291601-21291620 Msa0109380:intron 15.0%
!! CAAAAAAGAATTATTACTAT+AGG - chr1_3:21291824-21291843 None:intergenic 15.0%
!!! TCCATTAATTAATAAGTTTT+TGG + chr1_3:21292061-21292080 Msa0109380:intron 15.0%
!! AAAAAAGAAAAGAAGAACAA+TGG + chr1_3:21290494-21290513 Msa0109380:exon 20.0%
!!! ATTTTTGTGATTTCAGAATT+AGG + chr1_3:21290712-21290731 Msa0109380:intron 20.0%
!!! TTTTTGTGATTTCAGAATTA+GGG + chr1_3:21290713-21290732 Msa0109380:intron 20.0%
!!! CCGGTAATAATTTTTAAAAA+TGG + chr1_3:21291124-21291143 Msa0109380:intron 20.0%
!!! ATTTTCATAACAATATGGAT+AGG + chr1_3:21291606-21291625 Msa0109380:intron 20.0%
!!! TTTTCATAACAATATGGATA+GGG + chr1_3:21291607-21291626 Msa0109380:intron 20.0%
!! AAAAAATAACATATTGCTGT+TGG + chr1_3:21291688-21291707 Msa0109380:intron 20.0%
!! GTTTAACACTAATCATTTAA+GGG - chr1_3:21291978-21291997 None:intergenic 20.0%
!! GCCAAAAACTTATTAATTAA+TGG - chr1_3:21292065-21292084 None:intergenic 20.0%
!!! ACCAAATATGTGTATTTTTT+GGG - chr1_3:21292114-21292133 None:intergenic 20.0%
!!! AACCAAATATGTGTATTTTT+TGG - chr1_3:21292115-21292134 None:intergenic 20.0%
!! TAAACAATAATGATGTAGTT+TGG - chr1_3:21292152-21292171 None:intergenic 20.0%
!! TATTGCAAATCAATTTAACT+TGG + chr1_3:21292208-21292227 Msa0109380:intron 20.0%
!! TATGATTGTAATTGAGTAAA+AGG + chr1_3:21292499-21292518 Msa0109380:three_prime_UTR 20.0%
!! ACAACAAAAATTAATGAACA+TGG - chr1_3:21292531-21292550 None:intergenic 20.0%
!! AAAAAAGAAAAGAAGAACAA+TGG + chr1_3:21290494-21290513 Msa0109380:exon 20.0%
!!! ATTTTTGTGATTTCAGAATT+AGG + chr1_3:21290712-21290731 Msa0109380:intron 20.0%
!!! TTTTTGTGATTTCAGAATTA+GGG + chr1_3:21290713-21290732 Msa0109380:intron 20.0%
!!! CCGGTAATAATTTTTAAAAA+TGG + chr1_3:21291124-21291143 Msa0109380:intron 20.0%
!!! ATTTTCATAACAATATGGAT+AGG + chr1_3:21291606-21291625 Msa0109380:intron 20.0%
!!! TTTTCATAACAATATGGATA+GGG + chr1_3:21291607-21291626 Msa0109380:intron 20.0%
!! AAAAAATAACATATTGCTGT+TGG + chr1_3:21291688-21291707 Msa0109380:intron 20.0%
!! GTTTAACACTAATCATTTAA+GGG - chr1_3:21291978-21291997 None:intergenic 20.0%
!! GCCAAAAACTTATTAATTAA+TGG - chr1_3:21292065-21292084 None:intergenic 20.0%
!!! ACCAAATATGTGTATTTTTT+GGG - chr1_3:21292114-21292133 None:intergenic 20.0%
!!! AACCAAATATGTGTATTTTT+TGG - chr1_3:21292115-21292134 None:intergenic 20.0%
!! TAAACAATAATGATGTAGTT+TGG - chr1_3:21292152-21292171 None:intergenic 20.0%
!! TATTGCAAATCAATTTAACT+TGG + chr1_3:21292208-21292227 Msa0109380:intron 20.0%
!! TATGATTGTAATTGAGTAAA+AGG + chr1_3:21292499-21292518 Msa0109380:three_prime_UTR 20.0%
!! ACAACAAAAATTAATGAACA+TGG - chr1_3:21292531-21292550 None:intergenic 20.0%
! AGAAGAAGCAAATAAGATTT+GGG + chr1_3:21290455-21290474 Msa0109380:five_prime_UTR 25.0%
! TTAGTTAGTTAGTTAGTTAC+GGG - chr1_3:21290613-21290632 None:intergenic 25.0%
! GTTAGTTAGTTAGTTAGTTA+CGG - chr1_3:21290614-21290633 None:intergenic 25.0%
! AATAACTTACTAGCAACAAT+TGG - chr1_3:21290826-21290845 None:intergenic 25.0%
!!! AAGTTATTTCTCTTCTTCAA+TGG + chr1_3:21290838-21290857 Msa0109380:intron 25.0%
! TTGTATATCACAATCAGATT+AGG - chr1_3:21291015-21291034 None:intergenic 25.0%
! AAGGAATTATTGCATAAAGA+CGG - chr1_3:21291439-21291458 None:intergenic 25.0%
!! TAAAGTACTATATTAGAGCA+AGG + chr1_3:21291513-21291532 Msa0109380:intron 25.0%
!! AAAGTACTATATTAGAGCAA+GGG + chr1_3:21291514-21291533 Msa0109380:intron 25.0%
! GTGGACAAATTAATAGAAAT+TGG + chr1_3:21291562-21291581 Msa0109380:intron 25.0%
! TAGAAATTGGAAACATCAAT+AGG + chr1_3:21291575-21291594 Msa0109380:intron 25.0%
! AGAAATTGGAAACATCAATA+GGG + chr1_3:21291576-21291595 Msa0109380:intron 25.0%
! AACATATGTTACATACAAAC+AGG - chr1_3:21291942-21291961 None:intergenic 25.0%
! GTTTGTATGTAACATATGTT+AGG + chr1_3:21291942-21291961 Msa0109380:intron 25.0%
! CGTTTAACACTAATCATTTA+AGG - chr1_3:21291979-21291998 None:intergenic 25.0%
! ACCCAAAAAATACACATATT+TGG + chr1_3:21292110-21292129 Msa0109380:intron 25.0%
! TCTCTGAATAAATAAAACCA+AGG - chr1_3:21292238-21292257 None:intergenic 25.0%
!!! TATGTATTATTTTTAGGGAC+AGG + chr1_3:21292566-21292585 Msa0109380:three_prime_UTR 25.0%
! TATGTCATGAATCTTACAAA+TGG + chr1_3:21292630-21292649 Msa0109380:three_prime_UTR 25.0%
! TTCAAAGTCTTCATTATGAA+GGG - chr1_3:21292673-21292692 None:intergenic 25.0%
! ATTCAAAGTCTTCATTATGA+AGG - chr1_3:21292674-21292693 None:intergenic 25.0%
! AGAAGAAGCAAATAAGATTT+GGG + chr1_3:21290455-21290474 Msa0109380:five_prime_UTR 25.0%
! TTAGTTAGTTAGTTAGTTAC+GGG - chr1_3:21290613-21290632 None:intergenic 25.0%
! GTTAGTTAGTTAGTTAGTTA+CGG - chr1_3:21290614-21290633 None:intergenic 25.0%
! AATAACTTACTAGCAACAAT+TGG - chr1_3:21290826-21290845 None:intergenic 25.0%
!!! AAGTTATTTCTCTTCTTCAA+TGG + chr1_3:21290838-21290857 Msa0109380:intron 25.0%
! TTGTATATCACAATCAGATT+AGG - chr1_3:21291015-21291034 None:intergenic 25.0%
! AAGGAATTATTGCATAAAGA+CGG - chr1_3:21291439-21291458 None:intergenic 25.0%
!! TAAAGTACTATATTAGAGCA+AGG + chr1_3:21291513-21291532 Msa0109380:intron 25.0%
!! AAAGTACTATATTAGAGCAA+GGG + chr1_3:21291514-21291533 Msa0109380:intron 25.0%
! GTGGACAAATTAATAGAAAT+TGG + chr1_3:21291562-21291581 Msa0109380:intron 25.0%
! TAGAAATTGGAAACATCAAT+AGG + chr1_3:21291575-21291594 Msa0109380:intron 25.0%
! AGAAATTGGAAACATCAATA+GGG + chr1_3:21291576-21291595 Msa0109380:intron 25.0%
! AACATATGTTACATACAAAC+AGG - chr1_3:21291942-21291961 None:intergenic 25.0%
! GTTTGTATGTAACATATGTT+AGG + chr1_3:21291942-21291961 Msa0109380:intron 25.0%
! CGTTTAACACTAATCATTTA+AGG - chr1_3:21291979-21291998 None:intergenic 25.0%
! ACCCAAAAAATACACATATT+TGG + chr1_3:21292110-21292129 Msa0109380:intron 25.0%
! TCTCTGAATAAATAAAACCA+AGG - chr1_3:21292238-21292257 None:intergenic 25.0%
!!! TATGTATTATTTTTAGGGAC+AGG + chr1_3:21292566-21292585 Msa0109380:three_prime_UTR 25.0%
! TATGTCATGAATCTTACAAA+TGG + chr1_3:21292630-21292649 Msa0109380:three_prime_UTR 25.0%
! TTCAAAGTCTTCATTATGAA+GGG - chr1_3:21292673-21292692 None:intergenic 25.0%
! ATTCAAAGTCTTCATTATGA+AGG - chr1_3:21292674-21292693 None:intergenic 25.0%
GAGAAGAAGCAAATAAGATT+TGG + chr1_3:21290454-21290473 Msa0109380:five_prime_UTR 30.0%
AAAGAAAAGAAGAACAATGG+CGG + chr1_3:21290497-21290516 Msa0109380:exon 30.0%
TAGTTAGTTAGTTAGTTACG+GGG - chr1_3:21290612-21290631 None:intergenic 30.0%
TAACGCATCTACAAAAAACA+AGG - chr1_3:21291458-21291477 None:intergenic 30.0%
TTGTTGAATCTTGTGTTAAG+TGG + chr1_3:21291543-21291562 Msa0109380:intron 30.0%
! AAAAGTACACAAACCATAGT+TGG - chr1_3:21291656-21291675 None:intergenic 30.0%
ACTATAGGCAAACATAAACT+AGG - chr1_3:21291809-21291828 None:intergenic 30.0%
! TTAGTGTTAAACGTGTTGTT+AGG + chr1_3:21291986-21292005 Msa0109380:intron 30.0%
! TAGTGTTAAACGTGTTGTTA+GGG + chr1_3:21291987-21292006 Msa0109380:intron 30.0%
!!! ATAAGACCTGTTTTTACTGA+AGG + chr1_3:21292017-21292036 Msa0109380:intron 30.0%
ATATGACCTTCAGTAAAAAC+AGG - chr1_3:21292026-21292045 None:intergenic 30.0%
TAATAATCAGGATTTGCAGT+TGG - chr1_3:21292181-21292200 None:intergenic 30.0%
GTTTGAAAAGGATACTTTGT+TGG - chr1_3:21292297-21292316 None:intergenic 30.0%
CTTTGTCTTATGGTTTGAAA+AGG - chr1_3:21292309-21292328 None:intergenic 30.0%
TTGAAAACCATAGAGAAGAA+TGG + chr1_3:21292416-21292435 Msa0109380:CDS 30.0%
TCAAAGTCTTCATTATGAAG+GGG - chr1_3:21292672-21292691 None:intergenic 30.0%
GAGAAGAAGCAAATAAGATT+TGG + chr1_3:21290454-21290473 Msa0109380:five_prime_UTR 30.0%
AAAGAAAAGAAGAACAATGG+CGG + chr1_3:21290497-21290516 Msa0109380:exon 30.0%
TAGTTAGTTAGTTAGTTACG+GGG - chr1_3:21290612-21290631 None:intergenic 30.0%
TAACGCATCTACAAAAAACA+AGG - chr1_3:21291458-21291477 None:intergenic 30.0%
TTGTTGAATCTTGTGTTAAG+TGG + chr1_3:21291543-21291562 Msa0109380:intron 30.0%
! AAAAGTACACAAACCATAGT+TGG - chr1_3:21291656-21291675 None:intergenic 30.0%
ACTATAGGCAAACATAAACT+AGG - chr1_3:21291809-21291828 None:intergenic 30.0%
! TTAGTGTTAAACGTGTTGTT+AGG + chr1_3:21291986-21292005 Msa0109380:intron 30.0%
! TAGTGTTAAACGTGTTGTTA+GGG + chr1_3:21291987-21292006 Msa0109380:intron 30.0%
!!! ATAAGACCTGTTTTTACTGA+AGG + chr1_3:21292017-21292036 Msa0109380:intron 30.0%
ATATGACCTTCAGTAAAAAC+AGG - chr1_3:21292026-21292045 None:intergenic 30.0%
TAATAATCAGGATTTGCAGT+TGG - chr1_3:21292181-21292200 None:intergenic 30.0%
GTTTGAAAAGGATACTTTGT+TGG - chr1_3:21292297-21292316 None:intergenic 30.0%
CTTTGTCTTATGGTTTGAAA+AGG - chr1_3:21292309-21292328 None:intergenic 30.0%
TTGAAAACCATAGAGAAGAA+TGG + chr1_3:21292416-21292435 Msa0109380:CDS 30.0%
TCAAAGTCTTCATTATGAAG+GGG - chr1_3:21292672-21292691 None:intergenic 30.0%
GAAGCAAATAAGATTTGGGT+TGG + chr1_3:21290459-21290478 Msa0109380:five_prime_UTR 35.0%
AAGAAAAGAAGAACAATGGC+GGG + chr1_3:21290498-21290517 Msa0109380:exon 35.0%
TTCTTGAGTTCTCAGTTAAG+TGG + chr1_3:21290736-21290755 Msa0109380:CDS 35.0%
TGAAAAGGAGAAGCAACAAT+TGG - chr1_3:21290802-21290821 None:intergenic 35.0%
CTAGCAACAATTGGTTGAAA+AGG - chr1_3:21290817-21290836 None:intergenic 35.0%
TGACAATGACATGTAAACAC+CGG + chr1_3:21291105-21291124 Msa0109380:intron 35.0%
ACTCTAACATGTGTTAGACA+AGG + chr1_3:21291287-21291306 Msa0109380:intron 35.0%
CTCTAACATGTGTTAGACAA+GGG + chr1_3:21291288-21291307 Msa0109380:intron 35.0%
!! CATACTAGTTTGTTTCTTGC+AGG + chr1_3:21291336-21291355 Msa0109380:intron 35.0%
CTTGTATCATAAGCACTTAC+TGG + chr1_3:21291366-21291385 Msa0109380:intron 35.0%
CAATATGGATAGGGAAGAAA+TGG + chr1_3:21291616-21291635 Msa0109380:intron 35.0%
! TACCTTTAAGAGACCAACTA+TGG + chr1_3:21291640-21291659 Msa0109380:intron 35.0%
! AACCATAGTTGGTCTCTTAA+AGG - chr1_3:21291645-21291664 None:intergenic 35.0%
! TCATATTTTATTGCGGACAG+AGG + chr1_3:21291725-21291744 Msa0109380:intron 35.0%
AGGCAAACATAAACTAGGAA+CGG - chr1_3:21291804-21291823 None:intergenic 35.0%
AGAACATGCATAACATGTTG+TGG + chr1_3:21291860-21291879 Msa0109380:intron 35.0%
TGCTTAAGAAACTCGGTTAT+AGG - chr1_3:21291895-21291914 None:intergenic 35.0%
!!! GTATTTTTTGGGTGAAACCA+TGG - chr1_3:21292103-21292122 None:intergenic 35.0%
!! CAATTTAACTTGGTGTACCT+TGG + chr1_3:21292218-21292237 Msa0109380:intron 35.0%
! TTTGATTTCTTTCCGGTGAA+GGG - chr1_3:21292269-21292288 None:intergenic 35.0%
ACTGCAGTTTCTTTGTCTTA+TGG - chr1_3:21292319-21292338 None:intergenic 35.0%
AAAGCTTCGTTTGTCAACTA+AGG + chr1_3:21292391-21292410 Msa0109380:CDS 35.0%
ATCAAGTCCATTCTTCTCTA+TGG - chr1_3:21292426-21292445 None:intergenic 35.0%
ACTTGATGCAGTTGCAAAAA+AGG + chr1_3:21292439-21292458 Msa0109380:CDS 35.0%
GAAGCAAATAAGATTTGGGT+TGG + chr1_3:21290459-21290478 Msa0109380:five_prime_UTR 35.0%
AAGAAAAGAAGAACAATGGC+GGG + chr1_3:21290498-21290517 Msa0109380:exon 35.0%
TTCTTGAGTTCTCAGTTAAG+TGG + chr1_3:21290736-21290755 Msa0109380:CDS 35.0%
TGAAAAGGAGAAGCAACAAT+TGG - chr1_3:21290802-21290821 None:intergenic 35.0%
CTAGCAACAATTGGTTGAAA+AGG - chr1_3:21290817-21290836 None:intergenic 35.0%
TGACAATGACATGTAAACAC+CGG + chr1_3:21291105-21291124 Msa0109380:intron 35.0%
ACTCTAACATGTGTTAGACA+AGG + chr1_3:21291287-21291306 Msa0109380:intron 35.0%
CTCTAACATGTGTTAGACAA+GGG + chr1_3:21291288-21291307 Msa0109380:intron 35.0%
!! CATACTAGTTTGTTTCTTGC+AGG + chr1_3:21291336-21291355 Msa0109380:intron 35.0%
CTTGTATCATAAGCACTTAC+TGG + chr1_3:21291366-21291385 Msa0109380:intron 35.0%
CAATATGGATAGGGAAGAAA+TGG + chr1_3:21291616-21291635 Msa0109380:intron 35.0%
! TACCTTTAAGAGACCAACTA+TGG + chr1_3:21291640-21291659 Msa0109380:intron 35.0%
! AACCATAGTTGGTCTCTTAA+AGG - chr1_3:21291645-21291664 None:intergenic 35.0%
! TCATATTTTATTGCGGACAG+AGG + chr1_3:21291725-21291744 Msa0109380:intron 35.0%
AGGCAAACATAAACTAGGAA+CGG - chr1_3:21291804-21291823 None:intergenic 35.0%
AGAACATGCATAACATGTTG+TGG + chr1_3:21291860-21291879 Msa0109380:intron 35.0%
TGCTTAAGAAACTCGGTTAT+AGG - chr1_3:21291895-21291914 None:intergenic 35.0%
!!! GTATTTTTTGGGTGAAACCA+TGG - chr1_3:21292103-21292122 None:intergenic 35.0%
!! CAATTTAACTTGGTGTACCT+TGG + chr1_3:21292218-21292237 Msa0109380:intron 35.0%
! TTTGATTTCTTTCCGGTGAA+GGG - chr1_3:21292269-21292288 None:intergenic 35.0%
ACTGCAGTTTCTTTGTCTTA+TGG - chr1_3:21292319-21292338 None:intergenic 35.0%
AAAGCTTCGTTTGTCAACTA+AGG + chr1_3:21292391-21292410 Msa0109380:CDS 35.0%
ATCAAGTCCATTCTTCTCTA+TGG - chr1_3:21292426-21292445 None:intergenic 35.0%
ACTTGATGCAGTTGCAAAAA+AGG + chr1_3:21292439-21292458 Msa0109380:CDS 35.0%
TGCATAAAGACGGTGTTTAC+TGG - chr1_3:21291429-21291448 None:intergenic 40.0%
TTCACTCTAACGATGAAAGC+TGG - chr1_3:21291772-21291791 None:intergenic 40.0%
ACCTACGTGCTTAAGAAACT+CGG - chr1_3:21291902-21291921 None:intergenic 40.0%
GCTCTTAGTTAGAGATACCA+TGG + chr1_3:21292083-21292102 Msa0109380:intron 40.0%
! GTTTGATTTCTTTCCGGTGA+AGG - chr1_3:21292270-21292289 None:intergenic 40.0%
TCACCGGAAAGAAATCAAAC+AGG + chr1_3:21292270-21292289 Msa0109380:CDS 40.0%
CACCGGAAAGAAATCAAACA+GGG + chr1_3:21292271-21292290 Msa0109380:CDS 40.0%
! ACAGGAGTTGATTCTGACTA+CGG + chr1_3:21292584-21292603 Msa0109380:three_prime_UTR 40.0%
TGCATAAAGACGGTGTTTAC+TGG - chr1_3:21291429-21291448 None:intergenic 40.0%
TTCACTCTAACGATGAAAGC+TGG - chr1_3:21291772-21291791 None:intergenic 40.0%
ACCTACGTGCTTAAGAAACT+CGG - chr1_3:21291902-21291921 None:intergenic 40.0%
GCTCTTAGTTAGAGATACCA+TGG + chr1_3:21292083-21292102 Msa0109380:intron 40.0%
! GTTTGATTTCTTTCCGGTGA+AGG - chr1_3:21292270-21292289 None:intergenic 40.0%
TCACCGGAAAGAAATCAAAC+AGG + chr1_3:21292270-21292289 Msa0109380:CDS 40.0%
CACCGGAAAGAAATCAAACA+GGG + chr1_3:21292271-21292290 Msa0109380:CDS 40.0%
! ACAGGAGTTGATTCTGACTA+CGG + chr1_3:21292584-21292603 Msa0109380:three_prime_UTR 40.0%
AATATTTGAAGGGCAGTGGG+TGG + chr1_3:21290416-21290435 Msa0109380:five_prime_UTR 45.0%
TGAAGAGGGTTTGTGAGTGT+TGG - chr1_3:21290583-21290602 None:intergenic 45.0%
TTACGGGGTGAGAATGAAGA+GGG - chr1_3:21290597-21290616 None:intergenic 45.0%
GTGGTCTCAGAATCTCTTCT+CGG + chr1_3:21290755-21290774 Msa0109380:CDS 45.0%
GGAGAAGCAACAATTGGTGA+GGG - chr1_3:21290796-21290815 None:intergenic 45.0%
AGGAGAAGCAACAATTGGTG+AGG - chr1_3:21290797-21290816 None:intergenic 45.0%
!! ACGGGTTTGCTGCTAGTTTA+CGG + chr1_3:21291072-21291091 Msa0109380:intron 45.0%
! TTGCTGCTAGTTTACGGACA+TGG + chr1_3:21291078-21291097 Msa0109380:intron 45.0%
!! TTGACACTGACTCGTGTCAT+TGG + chr1_3:21291181-21291200 Msa0109380:intron 45.0%
TTATTGCGGACAGAGGAGTT+TGG + chr1_3:21291732-21291751 Msa0109380:intron 45.0%
ACCGAGTTTCTTAAGCACGT+AGG + chr1_3:21291898-21291917 Msa0109380:intron 45.0%
! GGCCCTGTTTGATTTCTTTC+CGG - chr1_3:21292276-21292295 None:intergenic 45.0%
ACCTCCAGTACAAGAGAGTT+TGG + chr1_3:21292345-21292364 Msa0109380:CDS 45.0%
ACCAAACTCTCTTGTACTGG+AGG - chr1_3:21292349-21292368 None:intergenic 45.0%
TCCAGTACAAGAGAGTTTGG+TGG + chr1_3:21292348-21292367 Msa0109380:CDS 45.0%
CCAGTACAAGAGAGTTTGGT+GGG + chr1_3:21292349-21292368 Msa0109380:CDS 45.0%
GATGCAGTTGCAAAAAAGGC+TGG + chr1_3:21292443-21292462 Msa0109380:CDS 45.0%
AATATTTGAAGGGCAGTGGG+TGG + chr1_3:21290416-21290435 Msa0109380:five_prime_UTR 45.0%
TGAAGAGGGTTTGTGAGTGT+TGG - chr1_3:21290583-21290602 None:intergenic 45.0%
TTACGGGGTGAGAATGAAGA+GGG - chr1_3:21290597-21290616 None:intergenic 45.0%
GTGGTCTCAGAATCTCTTCT+CGG + chr1_3:21290755-21290774 Msa0109380:CDS 45.0%
GGAGAAGCAACAATTGGTGA+GGG - chr1_3:21290796-21290815 None:intergenic 45.0%
AGGAGAAGCAACAATTGGTG+AGG - chr1_3:21290797-21290816 None:intergenic 45.0%
!! ACGGGTTTGCTGCTAGTTTA+CGG + chr1_3:21291072-21291091 Msa0109380:intron 45.0%
! TTGCTGCTAGTTTACGGACA+TGG + chr1_3:21291078-21291097 Msa0109380:intron 45.0%
!! TTGACACTGACTCGTGTCAT+TGG + chr1_3:21291181-21291200 Msa0109380:intron 45.0%
TTATTGCGGACAGAGGAGTT+TGG + chr1_3:21291732-21291751 Msa0109380:intron 45.0%
ACCGAGTTTCTTAAGCACGT+AGG + chr1_3:21291898-21291917 Msa0109380:intron 45.0%
! GGCCCTGTTTGATTTCTTTC+CGG - chr1_3:21292276-21292295 None:intergenic 45.0%
ACCTCCAGTACAAGAGAGTT+TGG + chr1_3:21292345-21292364 Msa0109380:CDS 45.0%
ACCAAACTCTCTTGTACTGG+AGG - chr1_3:21292349-21292368 None:intergenic 45.0%
TCCAGTACAAGAGAGTTTGG+TGG + chr1_3:21292348-21292367 Msa0109380:CDS 45.0%
CCAGTACAAGAGAGTTTGGT+GGG + chr1_3:21292349-21292368 Msa0109380:CDS 45.0%
GATGCAGTTGCAAAAAAGGC+TGG + chr1_3:21292443-21292462 Msa0109380:CDS 45.0%
GTTACGGGGTGAGAATGAAG+AGG - chr1_3:21290598-21290617 None:intergenic 50.0%
CACGAGTCAGTGTCAAACAC+AGG - chr1_3:21291177-21291196 None:intergenic 50.0%
CCCACCAAACTCTCTTGTAC+TGG - chr1_3:21292352-21292371 None:intergenic 50.0%
! AAGAGAGTTTGGTGGGAAGC+TGG + chr1_3:21292356-21292375 Msa0109380:CDS 50.0%
! AGAGAGTTTGGTGGGAAGCT+GGG + chr1_3:21292357-21292376 Msa0109380:CDS 50.0%
GTTACGGGGTGAGAATGAAG+AGG - chr1_3:21290598-21290617 None:intergenic 50.0%
CACGAGTCAGTGTCAAACAC+AGG - chr1_3:21291177-21291196 None:intergenic 50.0%
CCCACCAAACTCTCTTGTAC+TGG - chr1_3:21292352-21292371 None:intergenic 50.0%
! AAGAGAGTTTGGTGGGAAGC+TGG + chr1_3:21292356-21292375 Msa0109380:CDS 50.0%
! AGAGAGTTTGGTGGGAAGCT+GGG + chr1_3:21292357-21292376 Msa0109380:CDS 50.0%
GCGGGTTCTGCAGTATCACT+TGG + chr1_3:21290516-21290535 Msa0109380:CDS 55.0%
GCGCATAGAAGCGAAGACGA+AGG - chr1_3:21290547-21290566 None:intergenic 55.0%
ATGCGCAGGCTGTGTTTGCA+CGG + chr1_3:21291053-21291072 Msa0109380:intron 55.0%
! GAGAGAGTGTGTCCCTTCAC+CGG + chr1_3:21292254-21292273 Msa0109380:intron 55.0%
GCGGGTTCTGCAGTATCACT+TGG + chr1_3:21290516-21290535 Msa0109380:CDS 55.0%
GCGCATAGAAGCGAAGACGA+AGG - chr1_3:21290547-21290566 None:intergenic 55.0%
ATGCGCAGGCTGTGTTTGCA+CGG + chr1_3:21291053-21291072 Msa0109380:intron 55.0%
! GAGAGAGTGTGTCCCTTCAC+CGG + chr1_3:21292254-21292273 Msa0109380:intron 55.0%
AGCCTGCGCATCAAAACGCG+CGG - chr1_3:21291044-21291063 None:intergenic 60.0%
TGCGCAGGCTGTGTTTGCAC+GGG + chr1_3:21291054-21291073 Msa0109380:intron 60.0%
AGCCTGCGCATCAAAACGCG+CGG - chr1_3:21291044-21291063 None:intergenic 60.0%
TGCGCAGGCTGTGTTTGCAC+GGG + chr1_3:21291054-21291073 Msa0109380:intron 60.0%
!! ACCCGCGCGTTTTGATGCGC+AGG + chr1_3:21291039-21291058 Msa0109380:intron 65.0%
GCCTGCGCATCAAAACGCGC+GGG - chr1_3:21291043-21291062 None:intergenic 65.0%
!! ACCCGCGCGTTTTGATGCGC+AGG + chr1_3:21291039-21291058 Msa0109380:intron 65.0%
GCCTGCGCATCAAAACGCGC+GGG - chr1_3:21291043-21291062 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 21290414 21292731 21290414 ID=Msa0109380;Name=Msa0109380
chr1_3 mRNA 21290414 21292731 21290414 ID=Msa0109380-mRNA-1;Parent=Msa0109380;Name=Msa0109380-mRNA-1;_AED=0.05;_eAED=0.05;_QI=99|1|1|1|1|1|3|244|146
chr1_3 exon 21290414 21290612 21290414 ID=Msa0109380-mRNA-1:exon:7659;Parent=Msa0109380-mRNA-1
chr1_3 exon 21290728 21290835 21290728 ID=Msa0109380-mRNA-1:exon:7660;Parent=Msa0109380-mRNA-1
chr1_3 exon 21292255 21292731 21292255 ID=Msa0109380-mRNA-1:exon:7661;Parent=Msa0109380-mRNA-1
chr1_3 five_prime_UTR 21290414 21290512 21290414 ID=Msa0109380-mRNA-1:five_prime_utr;Parent=Msa0109380-mRNA-1
chr1_3 CDS 21290513 21290612 21290513 ID=Msa0109380-mRNA-1:cds;Parent=Msa0109380-mRNA-1
chr1_3 CDS 21290728 21290835 21290728 ID=Msa0109380-mRNA-1:cds;Parent=Msa0109380-mRNA-1
chr1_3 CDS 21292255 21292487 21292255 ID=Msa0109380-mRNA-1:cds;Parent=Msa0109380-mRNA-1
chr1_3 three_prime_UTR 21292488 21292731 21292488 ID=Msa0109380-mRNA-1:three_prime_utr;Parent=Msa0109380-mRNA-1
Gene Sequence

>Msa0109380

ATGGCGGGTTCTGCAGTATCACTTGGAAACACCTTCGTCTTCGCTTCTATGCGCACAATCTCATCAACCAACACTCACAAACCCTCTTCATTCTCACCCCAATTAGGGTTCTTGAGTTCTCAGTTAAGTGGTCTCAGAATCTCTTCTCGGACTTCGATTAAATTGCCCTCACCAATTGTTGCTTCTCCTTTTCAACCAATTGTTGCTAAGAGAGTGTGTCCCTTCACCGGAAAGAAATCAAACAGGGCCAACAAAGTATCCTTTTCAAACCATAAGACAAAGAAACTGCAGTTTGTAAACCTCCAGTACAAGAGAGTTTGGTGGGAAGCTGGGAAGCGTTATGTAAAGCTTCGTTTGTCAACTAAGGCGTTGAAAACCATAGAGAAGAATGGACTTGATGCAGTTGCAAAAAAGGCTGGAATTGATCTCAGTAAGAAATGA

Protein sequence

>Msa0109380

MAGSAVSLGNTFVFASMRTISSTNTHKPSSFSPQLGFLSSQLSGLRISSRTSIKLPSPIVASPFQPIVAKRVCPFTGKKSNRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLSKK*