AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1398740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1398740 MtrunA17_Chr8g0383951 86.966 445 7 3 1 394 1 445 0.0 756
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 139 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGGTTCCCTTCAAGATTT+TGG 0.069730 tig0022299:+20078 Msa1398740:CDS
GATTGGTACAAATTCAATTA+AGG 0.200850 tig0022299:+22172 Msa1398740:three_prime_UTR
CGCCTTTCTGCGCCCGGGCT+TGG 0.209663 tig0022299:+21123 Msa1398740:CDS
TGCTGAAGTTCTGGCATCTA+AGG 0.222981 tig0022299:+21331 Msa1398740:CDS
CTTCCTGATTGCTGAAGTTC+TGG 0.223414 tig0022299:+21322 Msa1398740:CDS
AAAAGGGACTCTGGTGGTTT+GGG 0.240265 tig0022299:+20060 Msa1398740:CDS
GACACATTAGAGGAAGTAAT+TGG 0.241899 tig0022299:+20036 Msa1398740:CDS
GAAAAGGGACTCTGGTGGTT+TGG 0.264666 tig0022299:+20059 Msa1398740:CDS
TGCAATGTGTCTCTTTCTTA+TGG 0.272210 tig0022299:+22503 Msa1398740:three_prime_UTR
GGGTGAGTTGATGTAGATTT+TGG 0.281925 tig0022299:+22250 Msa1398740:three_prime_UTR
TTCTTTCACCTCAAATGGTT+GGG 0.316414 tig0022299:+21202 Msa1398740:CDS
ATTTGGTCACTGTCGGATTT+CGG 0.330297 tig0022299:-22217 None:intergenic
CTCACCCGCTGCACGAGATT+TGG 0.332656 tig0022299:-22234 None:intergenic
ATTGGTACAAATTCAATTAA+GGG 0.353441 tig0022299:+22173 Msa1398740:three_prime_UTR
TCGGCAGGGTGCAGATTTGA+TGG 0.362196 tig0022299:+21008 Msa1398740:intron
CCATGTGGCGGATATGTTGC+TGG 0.367862 tig0022299:+21069 Msa1398740:CDS
GCCGATGGAACCTTCATTGA+TGG 0.370185 tig0022299:+21875 Msa1398740:CDS
GCGGACAATATTATTAAGAT+TGG 0.371580 tig0022299:+22155 Msa1398740:three_prime_UTR
GCAGCGCGCCTTTCTGCGCC+CGG 0.376005 tig0022299:+21117 Msa1398740:CDS
ATTATTTCTTTCACCTCAAA+TGG 0.379919 tig0022299:+21197 Msa1398740:CDS
CCGAGGATGGTGGACTTGAC+TGG 0.385164 tig0022299:+20203 Msa1398740:CDS
CCAATTGCGGGTACCACTCC+TGG 0.392343 tig0022299:+21699 Msa1398740:CDS
ACTTCCTCTAATGTGTCATA+TGG 0.402174 tig0022299:-20030 None:intergenic
ATTGCTTCCCCAACCATTTG+AGG 0.410807 tig0022299:-21210 None:intergenic
ACCACAATCCACACCAAGCC+CGG 0.425545 tig0022299:-21136 None:intergenic
TAGAGGAAGTAATTGGGAAA+AGG 0.426036 tig0022299:+20043 Msa1398740:CDS
AAATGCAGGGTGGCACTCAT+TGG 0.430241 tig0022299:+22039 Msa1398740:intron
TGGCACTCATTGGACTCAAT+GGG 0.438629 tig0022299:+22049 Msa1398740:CDS
AGAGGTCATGTGGTTATTCA+TGG 0.439010 tig0022299:+20275 Msa1398740:CDS
AGTGGTACCCGCAATTGGTT+TGG 0.441177 tig0022299:-21694 None:intergenic
ATCAGCTATTGTTCGTTCAC+AGG 0.442751 tig0022299:+19316 Msa1398740:CDS
GTGGCACTCATTGGACTCAA+TGG 0.444697 tig0022299:+22048 Msa1398740:CDS
AACCTGAACTGTATCACATC+GGG 0.445399 tig0022299:-21384 None:intergenic
ATGCCAGAACTTCAGCAATC+AGG 0.447778 tig0022299:-21325 None:intergenic
GGTGAAATACCGAGAAGTTC+CGG 0.451794 tig0022299:+20101 Msa1398740:CDS
CCAGGAGTGGTACCCGCAAT+TGG 0.455539 tig0022299:-21699 None:intergenic
CAGCGCGCCTTTCTGCGCCC+GGG 0.457346 tig0022299:+21118 Msa1398740:CDS
AGAGGAAGTAATTGGGAAAA+GGG 0.458354 tig0022299:+20044 Msa1398740:CDS
GCCTGGCAAAATACAGCAAA+TGG 0.460230 tig0022299:-21938 None:intergenic
TTTCTTTCACCTCAAATGGT+TGG 0.466714 tig0022299:+21201 Msa1398740:CDS
TCATACACCAAACCAATTGC+GGG 0.468084 tig0022299:+21687 Msa1398740:CDS
TTCTGCGCCCGGGCTTGGTG+TGG 0.471332 tig0022299:+21128 Msa1398740:CDS
CAGACCTCTGATGCATATCC+AGG 0.477506 tig0022299:-21717 None:intergenic
TCTGGAACGAAGGGATTGAT+AGG 0.478948 tig0022299:-18256 None:intergenic
TGCCTGTAGGCTGTACAACT+TGG 0.486368 tig0022299:+21606 Msa1398740:intron
CACCAAGCCCGGGCGCAGAA+AGG 0.488183 tig0022299:-21125 None:intergenic
AGTTTGAGTGTTAATGACAT+AGG 0.488359 tig0022299:+20304 Msa1398740:CDS
TGCTCCATATGACACATTAG+AGG 0.492829 tig0022299:+20026 Msa1398740:CDS
GATGCAAAATCCTGAGTGTT+CGG 0.498240 tig0022299:+20859 Msa1398740:intron
ATTTCACCCCAAAATCTTGA+AGG 0.501972 tig0022299:-20086 None:intergenic
CAGGGTGCAGATTTGATGGC+GGG 0.503740 tig0022299:+21012 Msa1398740:intron
ATGTGTTAATTTAGAATCCA+TGG 0.507142 tig0022299:+22422 Msa1398740:three_prime_UTR
TTTCATCAGCTTGCCGAGGA+TGG 0.507265 tig0022299:+20190 Msa1398740:intron
AAAAGAACAAAAGCAAGATA+AGG 0.507721 tig0022299:+18120 Msa1398740:five_prime_UTR
AATGGTTGGGGAAGCAATCA+AGG 0.508889 tig0022299:+21215 Msa1398740:CDS
TGTTCAGAGAAGCTCTCCTG+TGG 0.510171 tig0022299:+21662 Msa1398740:CDS
AATGGTAGATGTTGTTGTAA+TGG 0.513262 tig0022299:-18209 None:intergenic
CATCAGCTTGCCGAGGATGG+TGG 0.516636 tig0022299:+20193 Msa1398740:intron
GTCATGGTGGATAATTGCTA+TGG 0.519956 tig0022299:+20881 Msa1398740:CDS
TAGATTTCAGAACTTCTCCT+AGG 0.521668 tig0022299:-22079 None:intergenic
GTTTGAGTGTTAATGACATA+GGG 0.522137 tig0022299:+20305 Msa1398740:CDS
GTTCAGAGAAGCTCTCCTGT+GGG 0.522769 tig0022299:+21663 Msa1398740:CDS
AGCGAGTACCTCTGGAACGA+AGG 0.525027 tig0022299:-18266 None:intergenic
TTCTGAATGCAATGCATCAA+CGG 0.525308 tig0022299:-18371 None:intergenic
GTTAACTTGTGCTGAAAGAA+TGG 0.526680 tig0022299:+22525 Msa1398740:three_prime_UTR
ACACATTAGAGGAAGTAATT+GGG 0.527457 tig0022299:+20037 Msa1398740:CDS
CCAGTCAAGTCCACCATCCT+CGG 0.529194 tig0022299:-20203 None:intergenic
TCTCAGGTTATCTTTGCCGA+TGG 0.530646 tig0022299:+21860 Msa1398740:intron
TCTTTCACCTCAAATGGTTG+GGG 0.531494 tig0022299:+21203 Msa1398740:CDS
AAAGGCTCTCATGATATCAC+CGG 0.531537 tig0022299:-21166 None:intergenic
CCCGGGCTTGGTGTGGATTG+TGG 0.531980 tig0022299:+21135 Msa1398740:CDS
ACTCAATGGGGACTAGTCCT+AGG 0.534013 tig0022299:+22062 Msa1398740:CDS
GTGACCAAATCTCGTGCAGC+GGG 0.534283 tig0022299:+22230 Msa1398740:three_prime_UTR
GTGGATTGTGGTTCAACTCC+CGG 0.534401 tig0022299:+21147 Msa1398740:CDS
TCATGGTGGATAATTGCTAT+GGG 0.535135 tig0022299:+20882 Msa1398740:CDS
CAACAATTTCTGCAAAAGCC+TGG 0.536674 tig0022299:-19286 None:intergenic
AAGTTCTGAAATCTATATGA+TGG 0.540257 tig0022299:+22087 Msa1398740:CDS
CAAAATGTGCACTCATACAG+AGG 0.542723 tig0022299:+20257 Msa1398740:CDS
AGTAGCATACCGGAACTTCT+CGG 0.544340 tig0022299:-20110 None:intergenic
GAGATTCGAACGGGATGCGT+AGG 0.544625 tig0022299:-18187 None:intergenic
GTCATACACCAAACCAATTG+CGG 0.548656 tig0022299:+21686 Msa1398740:CDS
CCACAATCCACACCAAGCCC+GGG 0.549428 tig0022299:-21135 None:intergenic
GCTGAAGTTCTGGCATCTAA+GGG 0.550000 tig0022299:+21332 Msa1398740:CDS
ACTAGTACTTCCATCAATGA+AGG 0.556777 tig0022299:-21885 None:intergenic
ACTAGTGAGCTTTCATGTGA+TGG 0.559350 tig0022299:+21902 Msa1398740:CDS
TTAATAATATTGTCCGCTGA+AGG 0.559995 tig0022299:-22149 None:intergenic
AGAACAAAAGCAAGATAAGG+AGG 0.560797 tig0022299:+18123 Msa1398740:five_prime_UTR
GTAATTGGGAAAAGGGACTC+TGG 0.564622 tig0022299:+20051 Msa1398740:CDS
GGCAGTTTGATAAAGAATCC+TGG 0.564656 tig0022299:+21033 Msa1398740:CDS
GCACGAGATTTGGTCACTGT+CGG 0.567738 tig0022299:-22224 None:intergenic
ACAGCAAATGGCTCTCTAAG+AGG 0.576106 tig0022299:-21926 None:intergenic
ATATTATCGCATACCACCAT+GGG 0.576389 tig0022299:-20929 None:intergenic
GTTGTAATGGAGATTCGAAC+GGG 0.577259 tig0022299:-18196 None:intergenic
CATATTATCGCATACCACCA+TGG 0.578930 tig0022299:-20930 None:intergenic
TTTCACCCCAAAATCTTGAA+GGG 0.581207 tig0022299:-20085 None:intergenic
GTATACACCACATACTATCA+AGG 0.584193 tig0022299:-22460 None:intergenic
GCATTCAGAATTCAGAGCAG+TGG 0.587918 tig0022299:+18384 Msa1398740:CDS
GGGACGTGAAGCTCTTGACC+AGG 0.591339 tig0022299:+19268 Msa1398740:CDS
CATGGAGCAATCGTTCCACC+AGG 0.592431 tig0022299:-21051 None:intergenic
ACATATTATACGACCTTCAG+CGG 0.593384 tig0022299:+22136 Msa1398740:three_prime_UTR
TGTTGTAATGGAGATTCGAA+CGG 0.593925 tig0022299:-18197 None:intergenic
GAACAAAAGCAAGATAAGGA+GGG 0.594310 tig0022299:+18124 Msa1398740:five_prime_UTR
CACTCCTGGATATGCATCAG+AGG 0.597649 tig0022299:+21713 Msa1398740:CDS
CCAGCAACATATCCGCCACA+TGG 0.599034 tig0022299:-21069 None:intergenic
CATCACTATACTTACAAACA+AGG 0.600332 tig0022299:-22482 None:intergenic
TCCATCAATGAAGGTTCCAT+CGG 0.600675 tig0022299:-21876 None:intergenic
TATCAATCCCTTCGTTCCAG+AGG 0.600711 tig0022299:+18258 Msa1398740:CDS
GCAGGGTGCAGATTTGATGG+CGG 0.604272 tig0022299:+21011 Msa1398740:intron
AAATCCTGAGTGTTCGGTCA+TGG 0.605022 tig0022299:+20865 Msa1398740:CDS
CATGTGGCGGATATGTTGCT+GGG 0.607387 tig0022299:+21070 Msa1398740:CDS
GAAGCGAGAGGCATAGCGAA+TGG 0.611375 tig0022299:-18227 None:intergenic
TAATTGCTATGGGGAACTTG+TGG 0.611820 tig0022299:+20892 Msa1398740:CDS
GGTACAAATTCAATTAAGGG+TGG 0.613885 tig0022299:+22176 Msa1398740:three_prime_UTR
TCCTGAGTGTTCGGTCATGG+TGG 0.614793 tig0022299:+20868 Msa1398740:CDS
ATGCGTAGGATAAGCAGAGA+AGG 0.621133 tig0022299:-18173 None:intergenic
TGCTATGGGGAACTTGTGGA+AGG 0.622880 tig0022299:+20896 Msa1398740:CDS
GGTCAAAACAGTTCTTACCA+TGG 0.627762 tig0022299:-22439 None:intergenic
TTCAGAGAAGCTCTCCTGTG+GGG 0.632335 tig0022299:+21664 Msa1398740:CDS
GGTTTGGTGTATGACCCCAC+AGG 0.633665 tig0022299:-21678 None:intergenic
AAACCTGAACTGTATCACAT+CGG 0.634425 tig0022299:-21385 None:intergenic
CTCTGATGCATATCCAGGAG+TGG 0.634582 tig0022299:-21712 None:intergenic
GGAAGGCATTGAACCTCCCA+TGG 0.640149 tig0022299:+20913 Msa1398740:CDS
AAGGCTCTCATGATATCACC+GGG 0.640580 tig0022299:-21165 None:intergenic
GCGAGTACCTCTGGAACGAA+GGG 0.641161 tig0022299:-18265 None:intergenic
TCCACCATGACCGAACACTC+AGG 0.644287 tig0022299:-20869 None:intergenic
CAGAACTTCAGCAATCAGGA+AGG 0.652209 tig0022299:-21321 None:intergenic
GCACTCATACAGAGGTCATG+TGG 0.658940 tig0022299:+20265 Msa1398740:CDS
TTATCGCATACCACCATGGG+AGG 0.664402 tig0022299:-20926 None:intergenic
GGAACGATTGCTCCATGTGG+CGG 0.666888 tig0022299:+21057 Msa1398740:CDS
AGTGACCAAATCTCGTGCAG+CGG 0.669947 tig0022299:+22229 Msa1398740:three_prime_UTR
GGCACTCATTGGACTCAATG+GGG 0.670357 tig0022299:+22050 Msa1398740:CDS
ATTGGGAAAAGGGACTCTGG+TGG 0.681378 tig0022299:+20054 Msa1398740:CDS
GATAGGAACAGAGAAGCGAG+AGG 0.690097 tig0022299:-18239 None:intergenic
GGTGGAACGATTGCTCCATG+TGG 0.694007 tig0022299:+21054 Msa1398740:CDS
CCTGAACTGTATCACATCGG+GGG 0.701546 tig0022299:-21382 None:intergenic
ACCTGAACTGTATCACATCG+GGG 0.703191 tig0022299:-21383 None:intergenic
CATGGTGGATAATTGCTATG+GGG 0.706640 tig0022299:+20883 Msa1398740:CDS
AGGCATTGAACCTCCCATGG+TGG 0.710958 tig0022299:+20916 Msa1398740:CDS
AGTTTGATAAAGAATCCTGG+TGG 0.766897 tig0022299:+21036 Msa1398740:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTATTCATTTACAAAA+CGG - tig0022299:18508-18527 None:intergenic 10.0%
!!! TATTTTAGGTATTTATTTTT+TGG + tig0022299:18531-18550 Msa1398740:intron 10.0%
!!! ATTTTAGGTATTTATTTTTT+GGG + tig0022299:18532-18551 Msa1398740:intron 10.0%
!! ATATTAAGTTACTTATTAAT+AGG + tig0022299:19363-19382 Msa1398740:intron 10.0%
!! TATTAAGTTACTTATTAATA+GGG + tig0022299:19364-19383 Msa1398740:intron 10.0%
!!! TTTAAAGTTAATATTATTCA+AGG + tig0022299:20396-20415 Msa1398740:intron 10.0%
!!! TTTTAATTTTGATTTTAAGT+TGG + tig0022299:21458-21477 Msa1398740:intron 10.0%
!! AACTTAATATAAAGAAAACA+GGG - tig0022299:19353-19372 None:intergenic 15.0%
!! TAACTTAATATAAAGAAAAC+AGG - tig0022299:19354-19373 None:intergenic 15.0%
!! ATTAAGTTACTTATTAATAG+GGG + tig0022299:19365-19384 Msa1398740:intron 15.0%
!! TAGAATATTAGAAGAAAAAA+GGG - tig0022299:19888-19907 None:intergenic 15.0%
!! ATAGAATATTAGAAGAAAAA+AGG - tig0022299:19889-19908 None:intergenic 15.0%
!!! TTCTGTTCTTTAATATTTTT+AGG - tig0022299:20690-20709 None:intergenic 15.0%
!! TTCTAATAAAATGATAAATC+TGG - tig0022299:21243-21262 None:intergenic 15.0%
!!! ATACATTTTTTGCTTATATT+TGG + tig0022299:21266-21285 Msa1398740:intron 15.0%
!!! AAACATAATCAATTTGTTTA+GGG - tig0022299:21763-21782 None:intergenic 15.0%
!!! AAAACATAATCAATTTGTTT+AGG - tig0022299:21764-21783 None:intergenic 15.0%
!!! TAAACAAATTGATTATGTTT+TGG + tig0022299:21763-21782 Msa1398740:intron 15.0%
!!! AAAATATTGAGTTTTGTAAA+TGG + tig0022299:22374-22393 Msa1398740:three_prime_UTR 15.0%
!! AATAAGCTAAAAATAGCTTA+TGG + tig0022299:18692-18711 Msa1398740:intron 20.0%
!! ATTAACAAAACAACCAATTA+GGG - tig0022299:19084-19103 None:intergenic 20.0%
!! ATTAACAAAACAACCAATTA+GGG - tig0022299:19084-19103 None:intergenic 20.0%
!! AATACTAACAATGTTAACAT+TGG + tig0022299:19475-19494 Msa1398740:intron 20.0%
!! TATAACTTGAAGCTATAATT+TGG - tig0022299:19651-19670 None:intergenic 20.0%
!! TAACTTATAATCAATTCTGA+AGG + tig0022299:19669-19688 Msa1398740:intron 20.0%
!!! TAATATTTTTAGGTCACAAA+AGG - tig0022299:20680-20699 None:intergenic 20.0%
!! TATTAAAGAACAGAAAATAG+TGG + tig0022299:20695-20714 Msa1398740:intron 20.0%
!! TTTGTGATCAGAAAAATTAT+AGG - tig0022299:20803-20822 None:intergenic 20.0%
!!! ATTTTCTGTATTCTTTACAA+GGG + tig0022299:21296-21315 Msa1398740:intron 20.0%
!! CAAAATTAAAAATCAGATAC+AGG - tig0022299:21449-21468 None:intergenic 20.0%
!! GTAATATTGAACATCATTTA+AGG - tig0022299:21790-21809 None:intergenic 20.0%
!! ATCAAAGAGTTATTAATATC+TGG - tig0022299:21832-21851 None:intergenic 20.0%
!! ATTGGTACAAATTCAATTAA+GGG + tig0022299:22173-22192 Msa1398740:three_prime_UTR 20.0%
! AAAAGAACAAAAGCAAGATA+AGG + tig0022299:18120-18139 Msa1398740:five_prime_UTR 25.0%
! TTATCTATTAGCATAAGCAT+TGG - tig0022299:18761-18780 None:intergenic 25.0%
! TTATCTATTAGCATAAGCAT+TGG - tig0022299:18761-18780 None:intergenic 25.0%
! AAACATTGGATATATAAGAG+AGG + tig0022299:18900-18919 Msa1398740:intron 25.0%
! AACATTGGATATATAAGAGA+GGG + tig0022299:18901-18920 Msa1398740:intron 25.0%
! ATAAAGACCAATATGTTGTT+GGG - tig0022299:19024-19043 None:intergenic 25.0%
! CATTAACAAAACAACCAATT+AGG - tig0022299:19085-19104 None:intergenic 25.0%
! CATTAACAAAACAACCAATT+AGG - tig0022299:19085-19104 None:intergenic 25.0%
! CATTGTTAGTATTATATGCT+GGG - tig0022299:19468-19487 None:intergenic 25.0%
! ACATTGTTAGTATTATATGC+TGG - tig0022299:19469-19488 None:intergenic 25.0%
! CATTGGCGATTTAAATAAAA+AGG + tig0022299:19492-19511 Msa1398740:intron 25.0%
! TTGAATATGTAACTGGAATA+AGG + tig0022299:19962-19981 Msa1398740:intron 25.0%
! AAGAAATATTAGTAGCATAC+CGG - tig0022299:20123-20142 None:intergenic 25.0%
!! TATTATGGACTTTTAGATCA+GGG - tig0022299:20489-20508 None:intergenic 25.0%
! TATAGCTTCTACTAGTATTA+TGG - tig0022299:20504-20523 None:intergenic 25.0%
!! TAGAAGCTATATTGATTGTT+AGG + tig0022299:20513-20532 Msa1398740:intron 25.0%
!! AGAAGCTATATTGATTGTTA+GGG + tig0022299:20514-20533 Msa1398740:intron 25.0%
!!! TTTTTTACCAACAGAATTAC+TGG + tig0022299:20626-20645 Msa1398740:intron 25.0%
! AAGAAATAATCCCTGAAAAA+AGG - tig0022299:21187-21206 None:intergenic 25.0%
!! ATTATTTCTTTCACCTCAAA+TGG + tig0022299:21197-21216 Msa1398740:CDS 25.0%
!! GATTTTCTGTATTCTTTACA+AGG + tig0022299:21295-21314 Msa1398740:intron 25.0%
! AAGAGTTATTAATATCTGGT+AGG - tig0022299:21828-21847 None:intergenic 25.0%
! AGCAATAGAATACTATATAC+AGG + tig0022299:21978-21997 Msa1398740:intron 25.0%
!!! AAGTTCTGAAATCTATATGA+TGG + tig0022299:22087-22106 Msa1398740:CDS 25.0%
! GATTGGTACAAATTCAATTA+AGG + tig0022299:22172-22191 Msa1398740:three_prime_UTR 25.0%
!! TGATGTAGATTTTGGATTTT+TGG + tig0022299:22258-22277 Msa1398740:three_prime_UTR 25.0%
!! GATGTAGATTTTGGATTTTT+GGG + tig0022299:22259-22278 Msa1398740:three_prime_UTR 25.0%
!! ATGTGTTAATTTAGAATCCA+TGG + tig0022299:22422-22441 Msa1398740:three_prime_UTR 25.0%
AATGGTAGATGTTGTTGTAA+TGG - tig0022299:18212-18231 None:intergenic 30.0%
GCAACAAAATTAAGTCTGAA+TGG - tig0022299:18334-18353 None:intergenic 30.0%
! ACTTAATTTTGTTGCAATGC+AGG + tig0022299:18339-18358 Msa1398740:intron 30.0%
!! TGTGAAAAGCTTTAAGAACA+CGG - tig0022299:18435-18454 None:intergenic 30.0%
!! GCTGTTTTCATAAGCTATTT+TGG + tig0022299:18657-18676 Msa1398740:intron 30.0%
!! TGTTGTTTCTATAAGCTCTT+CGG + tig0022299:18725-18744 Msa1398740:intron 30.0%
TCAAATAAGACAATCCAAAC+AGG + tig0022299:18812-18831 Msa1398740:intron 30.0%
ACATTGGATATATAAGAGAG+GGG + tig0022299:18902-18921 Msa1398740:intron 30.0%
TAAAGACCAATATGTTGTTG+GGG - tig0022299:19023-19042 None:intergenic 30.0%
CATAAAGACCAATATGTTGT+TGG - tig0022299:19025-19044 None:intergenic 30.0%
! TAAAGACCAATGTGTTGTTA+GGG - tig0022299:19138-19157 None:intergenic 30.0%
! ATAAAGACCAATGTGTTGTT+AGG - tig0022299:19139-19158 None:intergenic 30.0%
ACTTATTAATAGGGGATATG+AGG + tig0022299:19373-19392 Msa1398740:intron 30.0%
AATTAAGGAGTGAAGTGATA+AGG + tig0022299:19420-19439 Msa1398740:intron 30.0%
ATTAAGGAGTGAAGTGATAA+GGG + tig0022299:19421-19440 Msa1398740:intron 30.0%
! ATTATGTTTTCTCCCAAAAG+TGG + tig0022299:19754-19773 Msa1398740:intron 30.0%
ATAGTATGCAAGTGTATGTT+TGG - tig0022299:19782-19801 None:intergenic 30.0%
TTCCAGTTACATATTCAACA+GGG - tig0022299:19960-19979 None:intergenic 30.0%
ATTCCAGTTACATATTCAAC+AGG - tig0022299:19961-19980 None:intergenic 30.0%
! CTAATATAGCTATCAGCTTT+TGG + tig0022299:19993-20012 Msa1398740:intron 30.0%
ACACATTAGAGGAAGTAATT+GGG + tig0022299:20037-20056 Msa1398740:CDS 30.0%
!! TATGAGTGCACATTTTGTTT+CGG - tig0022299:20254-20273 None:intergenic 30.0%
AGTTTGAGTGTTAATGACAT+AGG + tig0022299:20304-20323 Msa1398740:CDS 30.0%
GTTTGAGTGTTAATGACATA+GGG + tig0022299:20305-20324 Msa1398740:CDS 30.0%
! AGATTCTTAGTTGTGCTTTT+TGG + tig0022299:20352-20371 Msa1398740:intron 30.0%
!!! ATTCGTATTTTAACTCACAC+AGG - tig0022299:20434-20453 None:intergenic 30.0%
! GTATTATGGACTTTTAGATC+AGG - tig0022299:20490-20509 None:intergenic 30.0%
TAGTATTCCAGTAATTCTGT+TGG - tig0022299:20636-20655 None:intergenic 30.0%
!!! CTTTTAAAGTATGAGCGTTA+GGG + tig0022299:20732-20751 Msa1398740:intron 30.0%
! TTTTGCATCTGAACATTGAA+GGG - tig0022299:20848-20867 None:intergenic 30.0%
! ATTTTGCATCTGAACATTGA+AGG - tig0022299:20849-20868 None:intergenic 30.0%
GAATAAAGCAATACATACTG+CGG - tig0022299:20956-20975 None:intergenic 30.0%
! GTATGTATTGCTTTATTCCA+AGG + tig0022299:20958-20977 Msa1398740:intron 30.0%
TATCACATTTCTACATTCGT+CGG + tig0022299:20989-21008 Msa1398740:intron 30.0%
ATTAATATCTGGTAGGACTT+TGG - tig0022299:21821-21840 None:intergenic 30.0%
!! TTCATTTGTTTTCCAAATGC+AGG + tig0022299:22025-22044 Msa1398740:intron 30.0%
!! TCATTTGTTTTCCAAATGCA+GGG + tig0022299:22026-22045 Msa1398740:intron 30.0%
TTAATAATATTGTCCGCTGA+AGG - tig0022299:22152-22171 None:intergenic 30.0%
GCGGACAATATTATTAAGAT+TGG + tig0022299:22155-22174 Msa1398740:three_prime_UTR 30.0%
!! TTGAGTTTTGTAAATGGCTT+AGG + tig0022299:22380-22399 Msa1398740:three_prime_UTR 30.0%
CATCACTATACTTACAAACA+AGG - tig0022299:22485-22504 None:intergenic 30.0%
AGAACAAAAGCAAGATAAGG+AGG + tig0022299:18123-18142 Msa1398740:five_prime_UTR 35.0%
GAACAAAAGCAAGATAAGGA+GGG + tig0022299:18124-18143 Msa1398740:five_prime_UTR 35.0%
! TGTTGTAATGGAGATTCGAA+CGG - tig0022299:18200-18219 None:intergenic 35.0%
TTCTGAATGCAATGCATCAA+CGG - tig0022299:18374-18393 None:intergenic 35.0%
!! GTGAAAAGCTTTAAGAACAC+GGG - tig0022299:18434-18453 None:intergenic 35.0%
! CCTTAAGGCATTAGGTATAT+GGG - tig0022299:18929-18948 None:intergenic 35.0%
! ACCTTAAGGCATTAGGTATA+TGG - tig0022299:18930-18949 None:intergenic 35.0%
! ACTCAAAACCTTAAGGCATT+AGG - tig0022299:18937-18956 None:intergenic 35.0%
!!! TAATGCCTTAAGGTTTTGAG+TGG + tig0022299:18936-18955 Msa1398740:intron 35.0%
CAATCTAAACATGCCCTAAT+TGG + tig0022299:19068-19087 Msa1398740:intron 35.0%
CAATCTAAACATGCCCTAAT+TGG + tig0022299:19068-19087 Msa1398740:intron 35.0%
ATTAATAGGGGATATGAGGT+TGG + tig0022299:19377-19396 Msa1398740:intron 35.0%
TTAAGGAGTGAAGTGATAAG+GGG + tig0022299:19422-19441 Msa1398740:intron 35.0%
!! GTATGTTTGGTTCCACTTTT+GGG - tig0022299:19769-19788 None:intergenic 35.0%
!! TGTATGTTTGGTTCCACTTT+TGG - tig0022299:19770-19789 None:intergenic 35.0%
TTCCCTGTTGAATATGTAAC+TGG + tig0022299:19955-19974 Msa1398740:intron 35.0%
ACTTCCTCTAATGTGTCATA+TGG - tig0022299:20033-20052 None:intergenic 35.0%
GACACATTAGAGGAAGTAAT+TGG + tig0022299:20036-20055 Msa1398740:CDS 35.0%
TAGAGGAAGTAATTGGGAAA+AGG + tig0022299:20043-20062 Msa1398740:CDS 35.0%
AGAGGAAGTAATTGGGAAAA+GGG + tig0022299:20044-20063 Msa1398740:CDS 35.0%
TTTCACCCCAAAATCTTGAA+GGG - tig0022299:20088-20107 None:intergenic 35.0%
ATTTCACCCCAAAATCTTGA+AGG - tig0022299:20089-20108 None:intergenic 35.0%
!! ATGAGTGCACATTTTGTTTC+GGG - tig0022299:20253-20272 None:intergenic 35.0%
!!! GCTTTTAAAGTATGAGCGTT+AGG + tig0022299:20731-20750 Msa1398740:intron 35.0%
TTGAAGGGTAAAAAGGTTAC+AGG - tig0022299:20833-20852 None:intergenic 35.0%
CTGAACATTGAAGGGTAAAA+AGG - tig0022299:20840-20859 None:intergenic 35.0%
!! TCATGGTGGATAATTGCTAT+GGG + tig0022299:20882-20901 Msa1398740:CDS 35.0%
ATATTATCGCATACCACCAT+GGG - tig0022299:20932-20951 None:intergenic 35.0%
AGTTTGATAAAGAATCCTGG+TGG + tig0022299:21036-21055 Msa1398740:CDS 35.0%
TGTTGCTGGGAAAAAGAAAT+TGG + tig0022299:21083-21102 Msa1398740:CDS 35.0%
!!! TATCATGAGAGCCTTTTTTC+AGG + tig0022299:21173-21192 Msa1398740:CDS 35.0%
!!! ATCATGAGAGCCTTTTTTCA+GGG + tig0022299:21174-21193 Msa1398740:CDS 35.0%
TTTCTTTCACCTCAAATGGT+TGG + tig0022299:21201-21220 Msa1398740:CDS 35.0%
TTCTTTCACCTCAAATGGTT+GGG + tig0022299:21202-21221 Msa1398740:CDS 35.0%
AAACCTGAACTGTATCACAT+CGG - tig0022299:21388-21407 None:intergenic 35.0%
TCTAGAAAGAATGATAGCAC+AGG - tig0022299:21421-21440 None:intergenic 35.0%
ATACTGAAAGAAACTCCTAC+GGG - tig0022299:21539-21558 None:intergenic 35.0%
CATACTGAAAGAAACTCCTA+CGG - tig0022299:21540-21559 None:intergenic 35.0%
AATTGATCTTCAATGCCTGT+AGG + tig0022299:21593-21612 Msa1398740:intron 35.0%
! AATTTGTTTAGGGACTGTGA+AGG - tig0022299:21753-21772 None:intergenic 35.0%
TCTTTGATATCACTCTTCTC+AGG + tig0022299:21844-21863 Msa1398740:intron 35.0%
ACTAGTACTTCCATCAATGA+AGG - tig0022299:21888-21907 None:intergenic 35.0%
TAGATTTCAGAACTTCTCCT+AGG - tig0022299:22082-22101 None:intergenic 35.0%
ACATATTATACGACCTTCAG+CGG + tig0022299:22136-22155 Msa1398740:three_prime_UTR 35.0%
GGTACAAATTCAATTAAGGG+TGG + tig0022299:22176-22195 Msa1398740:three_prime_UTR 35.0%
!! GTTTTGACCTTGATAGTATG+TGG + tig0022299:22453-22472 Msa1398740:three_prime_UTR 35.0%
GTATACACCACATACTATCA+AGG - tig0022299:22463-22482 None:intergenic 35.0%
TGCAATGTGTCTCTTTCTTA+TGG + tig0022299:22503-22522 Msa1398740:three_prime_UTR 35.0%
!! GTTAACTTGTGCTGAAAGAA+TGG + tig0022299:22525-22544 Msa1398740:three_prime_UTR 35.0%
! GTTGTAATGGAGATTCGAAC+GGG - tig0022299:18199-18218 None:intergenic 40.0%
!! AAAAGCTTTAAGAACACGGG+TGG - tig0022299:18431-18450 None:intergenic 40.0%
GTGAGTGATTATATCCCACA+TGG + tig0022299:18863-18882 Msa1398740:intron 40.0%
GATTATATCCCACATGGACT+CGG + tig0022299:18869-18888 Msa1398740:intron 40.0%
CCCATATACCTAATGCCTTA+AGG + tig0022299:18926-18945 Msa1398740:intron 40.0%
CATCTCCACTCAAAACCTTA+AGG - tig0022299:18944-18963 None:intergenic 40.0%
!!! TAAGGTTTTGAGTGGAGATG+TGG + tig0022299:18944-18963 Msa1398740:intron 40.0%
GATGTGGTGTCTAAGTTTCT+TGG + tig0022299:18960-18979 Msa1398740:intron 40.0%
TGTTAATGCTGTCAGCACTT+TGG + tig0022299:19212-19231 Msa1398740:intron 40.0%
GTTATGGTCATGATGAAGCT+GGG + tig0022299:19246-19265 Msa1398740:intron 40.0%
TTATGGTCATGATGAAGCTG+GGG + tig0022299:19247-19266 Msa1398740:intron 40.0%
CAACAATTTCTGCAAAAGCC+TGG - tig0022299:19289-19308 None:intergenic 40.0%
! CAGGCTTTTGCAGAAATTGT+TGG + tig0022299:19287-19306 Msa1398740:CDS 40.0%
ATCAGCTATTGTTCGTTCAC+AGG + tig0022299:19316-19335 Msa1398740:CDS 40.0%
AGTATTATATGCTGGGAGTG+TGG - tig0022299:19461-19480 None:intergenic 40.0%
ACTTGTCAACAGTTCTTCTC+AGG + tig0022299:19806-19825 Msa1398740:intron 40.0%
GGCAAATAAAGCACATGTGA+TGG - tig0022299:19840-19859 None:intergenic 40.0%
CAACTATAGAGCTATACTGC+TGG - tig0022299:19927-19946 None:intergenic 40.0%
TGCTCCATATGACACATTAG+AGG + tig0022299:20026-20045 Msa1398740:CDS 40.0%
! TTGGGTTCCCTTCAAGATTT+TGG + tig0022299:20078-20097 Msa1398740:CDS 40.0%
! TGGGTTCCCTTCAAGATTTT+GGG + tig0022299:20079-20098 Msa1398740:CDS 40.0%
!!! ATTTTTTCATCAGCTTGCCG+AGG + tig0022299:20186-20205 Msa1398740:intron 40.0%
CAAAATGTGCACTCATACAG+AGG + tig0022299:20257-20276 Msa1398740:CDS 40.0%
AGAGGTCATGTGGTTATTCA+TGG + tig0022299:20275-20294 Msa1398740:CDS 40.0%
TTAACTCACACAGGTCACAA+TGG - tig0022299:20425-20444 None:intergenic 40.0%
!!! TACAGCAGTCTTGTTTTGCA+TGG + tig0022299:20599-20618 Msa1398740:intron 40.0%
AGGTCACAAAAGGAATCAGT+TGG - tig0022299:20670-20689 None:intergenic 40.0%
GATGCAAAATCCTGAGTGTT+CGG + tig0022299:20859-20878 Msa1398740:intron 40.0%
!! GTCATGGTGGATAATTGCTA+TGG + tig0022299:20881-20900 Msa1398740:CDS 40.0%
!! CATGGTGGATAATTGCTATG+GGG + tig0022299:20883-20902 Msa1398740:CDS 40.0%
TAATTGCTATGGGGAACTTG+TGG + tig0022299:20892-20911 Msa1398740:CDS 40.0%
CATATTATCGCATACCACCA+TGG - tig0022299:20933-20952 None:intergenic 40.0%
AATGTGATACTGCACATCCT+TGG - tig0022299:20978-20997 None:intergenic 40.0%
GGCAGTTTGATAAAGAATCC+TGG + tig0022299:21033-21052 Msa1398740:CDS 40.0%
AAAGGCTCTCATGATATCAC+CGG - tig0022299:21169-21188 None:intergenic 40.0%
TCTTTCACCTCAAATGGTTG+GGG + tig0022299:21203-21222 Msa1398740:CDS 40.0%
AACCTGAACTGTATCACATC+GGG - tig0022299:21387-21406 None:intergenic 40.0%
!! TGGCAGCGAAATTTTGTTTC+TGG + tig0022299:21478-21497 Msa1398740:intron 40.0%
!! TGTTTCTGGTAGAAAAGCTG+TGG + tig0022299:21492-21511 Msa1398740:intron 40.0%
! TAGAAAAGCTGTGGTTGATG+TGG + tig0022299:21501-21520 Msa1398740:intron 40.0%
! AGAAAAGCTGTGGTTGATGT+GGG + tig0022299:21502-21521 Msa1398740:intron 40.0%
GTCATACACCAAACCAATTG+CGG + tig0022299:21686-21705 Msa1398740:CDS 40.0%
TCATACACCAAACCAATTGC+GGG + tig0022299:21687-21706 Msa1398740:CDS 40.0%
TCCATCAATGAAGGTTCCAT+CGG - tig0022299:21879-21898 None:intergenic 40.0%
ACTAGTGAGCTTTCATGTGA+TGG + tig0022299:21902-21921 Msa1398740:CDS 40.0%
!! TTTGTTTTCCAAATGCAGGG+TGG + tig0022299:22029-22048 Msa1398740:intron 40.0%
ATTTGGTCACTGTCGGATTT+CGG - tig0022299:22220-22239 None:intergenic 40.0%
!!! GGGTGAGTTGATGTAGATTT+TGG + tig0022299:22250-22269 Msa1398740:three_prime_UTR 40.0%
GGTCAAAACAGTTCTTACCA+TGG - tig0022299:22442-22461 None:intergenic 40.0%
ATGCGTAGGATAAGCAGAGA+AGG - tig0022299:18176-18195 None:intergenic 45.0%
! TCTGGAACGAAGGGATTGAT+AGG - tig0022299:18259-18278 None:intergenic 45.0%
TATCAATCCCTTCGTTCCAG+AGG + tig0022299:18258-18277 Msa1398740:CDS 45.0%
GCATTCAGAATTCAGAGCAG+TGG + tig0022299:18384-18403 Msa1398740:CDS 45.0%
! GCTTTTCACAATGCTCGACT+TGG + tig0022299:18445-18464 Msa1398740:intron 45.0%
CACAATGAGATGAGCCTGTT+TGG - tig0022299:18829-18848 None:intergenic 45.0%
ACAGGCTCATCTCATTGTGT+TGG + tig0022299:18830-18849 Msa1398740:intron 45.0%
CAGGCTCATCTCATTGTGTT+GGG + tig0022299:18831-18850 Msa1398740:intron 45.0%
ACTCGGAATGGAGGAAACAT+TGG + tig0022299:18886-18905 Msa1398740:intron 45.0%
GTGGTGTCTAAGTTTCTTGG+TGG + tig0022299:18963-18982 Msa1398740:intron 45.0%
CAATATGTTGTTGGGGAGTC+CGG - tig0022299:19016-19035 None:intergenic 45.0%
! AATGTGTTGTTAGGGAGTCC+GGG - tig0022299:19130-19149 None:intergenic 45.0%
! CAATGTGTTGTTAGGGAGTC+CGG - tig0022299:19131-19150 None:intergenic 45.0%
TAATGCTGTCAGCACTTTGG+TGG + tig0022299:19215-19234 Msa1398740:intron 45.0%
!! TTTGGTGGTTGCACTGGTTA+TGG + tig0022299:19230-19249 Msa1398740:intron 45.0%
GGTTATGGTCATGATGAAGC+TGG + tig0022299:19245-19264 Msa1398740:intron 45.0%
TATGGTCATGATGAAGCTGG+GGG + tig0022299:19248-19267 Msa1398740:intron 45.0%
! TAGGGGATATGAGGTTGGTT+TGG + tig0022299:19382-19401 Msa1398740:intron 45.0%
!! TTGGTTTGGTGGCTGAAGTA+GGG + tig0022299:19396-19415 Msa1398740:intron 45.0%
TGGCTGAAGTAGGGGAATTA+AGG + tig0022299:19405-19424 Msa1398740:intron 45.0%
AGTGAAGTGATAAGGGGTTG+AGG + tig0022299:19428-19447 Msa1398740:intron 45.0%
GTGAAGTGATAAGGGGTTGA+GGG + tig0022299:19429-19448 Msa1398740:intron 45.0%
!! GTGCTTTATTTGCCCTCTTG+AGG + tig0022299:19846-19865 Msa1398740:intron 45.0%
AAAAGGGTTACCTCATCTCC+TGG - tig0022299:19872-19891 None:intergenic 45.0%
! TATCAGCTTTTGGCAGTTGC+TGG + tig0022299:20003-20022 Msa1398740:intron 45.0%
GTAATTGGGAAAAGGGACTC+TGG + tig0022299:20051-20070 Msa1398740:CDS 45.0%
AAAAGGGACTCTGGTGGTTT+GGG + tig0022299:20060-20079 Msa1398740:CDS 45.0%
! GGGTTCCCTTCAAGATTTTG+GGG + tig0022299:20080-20099 Msa1398740:CDS 45.0%
GGTGAAATACCGAGAAGTTC+CGG + tig0022299:20101-20120 Msa1398740:CDS 45.0%
AGTAGCATACCGGAACTTCT+CGG - tig0022299:20113-20132 None:intergenic 45.0%
CTGCTGTAGAGAGTTATCAG+TGG - tig0022299:20587-20606 None:intergenic 45.0%
AAATCCTGAGTGTTCGGTCA+TGG + tig0022299:20865-20884 Msa1398740:CDS 45.0%
ACATTTCTACATTCGTCGGC+AGG + tig0022299:20993-21012 Msa1398740:intron 45.0%
CATTTCTACATTCGTCGGCA+GGG + tig0022299:20994-21013 Msa1398740:intron 45.0%
AAGGCTCTCATGATATCACC+GGG - tig0022299:21168-21187 None:intergenic 45.0%
ATTGCTTCCCCAACCATTTG+AGG - tig0022299:21213-21232 None:intergenic 45.0%
AATGGTTGGGGAAGCAATCA+AGG + tig0022299:21215-21234 Msa1398740:CDS 45.0%
CAGAACTTCAGCAATCAGGA+AGG - tig0022299:21324-21343 None:intergenic 45.0%
CTTCCTGATTGCTGAAGTTC+TGG + tig0022299:21322-21341 Msa1398740:CDS 45.0%
ATGCCAGAACTTCAGCAATC+AGG - tig0022299:21328-21347 None:intergenic 45.0%
! TGCTGAAGTTCTGGCATCTA+AGG + tig0022299:21331-21350 Msa1398740:CDS 45.0%
! GCTGAAGTTCTGGCATCTAA+GGG + tig0022299:21332-21351 Msa1398740:CDS 45.0%
ACCTGAACTGTATCACATCG+GGG - tig0022299:21386-21405 None:intergenic 45.0%
TTCCAAGTTGTACAGCCTAC+AGG - tig0022299:21611-21630 None:intergenic 45.0%
AAAAAGCAAGGAGACGCTCA+CGG - tig0022299:21635-21654 None:intergenic 45.0%
GAACAGCCTCACAAAAAGCA+AGG - tig0022299:21647-21666 None:intergenic 45.0%
TCTCAGGTTATCTTTGCCGA+TGG + tig0022299:21860-21879 Msa1398740:intron 45.0%
ACAGCAAATGGCTCTCTAAG+AGG - tig0022299:21929-21948 None:intergenic 45.0%
!!! GCCATTTGCTGTATTTTGCC+AGG + tig0022299:21937-21956 Msa1398740:intron 45.0%
GCCTGGCAAAATACAGCAAA+TGG - tig0022299:21941-21960 None:intergenic 45.0%
! CTGTATTTTGCCAGGCATGT+TGG + tig0022299:21945-21964 Msa1398740:intron 45.0%
TGATGCAAAACCAACATGCC+TGG - tig0022299:21958-21977 None:intergenic 45.0%
TGGCACTCATTGGACTCAAT+GGG + tig0022299:22049-22068 Msa1398740:CDS 45.0%
!!! TGAATAATTATAATTATTTT+AGG + tig0022299:18517-18536 Msa1398740:intron 5.0%
GATAGGAACAGAGAAGCGAG+AGG - tig0022299:18242-18261 None:intergenic 50.0%
TATCCCACATGGACTCGGAA+TGG + tig0022299:18874-18893 Msa1398740:intron 50.0%
CGGACTCCCCAACAACATAT+TGG + tig0022299:19014-19033 Msa1398740:intron 50.0%
! ATGTGTTGTTAGGGAGTCCG+GGG - tig0022299:19129-19148 None:intergenic 50.0%
CGGACTCCCTAACAACACAT+TGG + tig0022299:19129-19148 Msa1398740:intron 50.0%
!! GGGATATGAGGTTGGTTTGG+TGG + tig0022299:19385-19404 Msa1398740:intron 50.0%
!! GTTGGTTTGGTGGCTGAAGT+AGG + tig0022299:19395-19414 Msa1398740:intron 50.0%
!! TGGTTTGGTGGCTGAAGTAG+GGG + tig0022299:19397-19416 Msa1398740:intron 50.0%
TTATTTGCCCTCTTGAGGCC+AGG + tig0022299:19851-19870 Msa1398740:intron 50.0%
ATTGGGAAAAGGGACTCTGG+TGG + tig0022299:20054-20073 Msa1398740:CDS 50.0%
GAAAAGGGACTCTGGTGGTT+TGG + tig0022299:20059-20078 Msa1398740:CDS 50.0%
TTTCATCAGCTTGCCGAGGA+TGG + tig0022299:20190-20209 Msa1398740:intron 50.0%
GCACTCATACAGAGGTCATG+TGG + tig0022299:20265-20284 Msa1398740:CDS 50.0%
TGCTATGGGGAACTTGTGGA+AGG + tig0022299:20896-20915 Msa1398740:CDS 50.0%
TTATCGCATACCACCATGGG+AGG - tig0022299:20929-20948 None:intergenic 50.0%
!! CATGTGGCGGATATGTTGCT+GGG + tig0022299:21070-21089 Msa1398740:CDS 50.0%
! GTGGATTGTGGTTCAACTCC+CGG + tig0022299:21147-21166 Msa1398740:CDS 50.0%
CCTGAACTGTATCACATCGG+GGG - tig0022299:21385-21404 None:intergenic 50.0%
TGGGCAAAAACTTGTCCCGT+AGG + tig0022299:21521-21540 Msa1398740:intron 50.0%
TGCCTGTAGGCTGTACAACT+TGG + tig0022299:21606-21625 Msa1398740:intron 50.0%
!!! GCGTCTCCTTGCTTTTTGTG+AGG + tig0022299:21638-21657 Msa1398740:CDS 50.0%
TGTTCAGAGAAGCTCTCCTG+TGG + tig0022299:21662-21681 Msa1398740:CDS 50.0%
GTTCAGAGAAGCTCTCCTGT+GGG + tig0022299:21663-21682 Msa1398740:CDS 50.0%
TTCAGAGAAGCTCTCCTGTG+GGG + tig0022299:21664-21683 Msa1398740:CDS 50.0%
AGTGGTACCCGCAATTGGTT+TGG - tig0022299:21697-21716 None:intergenic 50.0%
CTCTGATGCATATCCAGGAG+TGG - tig0022299:21715-21734 None:intergenic 50.0%
CACTCCTGGATATGCATCAG+AGG + tig0022299:21713-21732 Msa1398740:CDS 50.0%
CAGACCTCTGATGCATATCC+AGG - tig0022299:21720-21739 None:intergenic 50.0%
GCCGATGGAACCTTCATTGA+TGG + tig0022299:21875-21894 Msa1398740:CDS 50.0%
AATGAGTGCCACCCTGCATT+TGG - tig0022299:22040-22059 None:intergenic 50.0%
AAATGCAGGGTGGCACTCAT+TGG + tig0022299:22039-22058 Msa1398740:intron 50.0%
GTGGCACTCATTGGACTCAA+TGG + tig0022299:22048-22067 Msa1398740:CDS 50.0%
GGCACTCATTGGACTCAATG+GGG + tig0022299:22050-22069 Msa1398740:CDS 50.0%
!! ACTCAATGGGGACTAGTCCT+AGG + tig0022299:22062-22081 Msa1398740:CDS 50.0%
! GCACGAGATTTGGTCACTGT+CGG - tig0022299:22227-22246 None:intergenic 50.0%
AGTGACCAAATCTCGTGCAG+CGG + tig0022299:22229-22248 Msa1398740:three_prime_UTR 50.0%
GAGATTCGAACGGGATGCGT+AGG - tig0022299:18190-18209 None:intergenic 55.0%
! GAAGCGAGAGGCATAGCGAA+TGG - tig0022299:18230-18249 None:intergenic 55.0%
!! GCGAGTACCTCTGGAACGAA+GGG - tig0022299:18268-18287 None:intergenic 55.0%
!! AGCGAGTACCTCTGGAACGA+AGG - tig0022299:18269-18288 None:intergenic 55.0%
GAAGAGTGAGCGAGTACCTC+TGG - tig0022299:18277-18296 None:intergenic 55.0%
CCTCCATTCCGAGTCCATGT+GGG - tig0022299:18880-18899 None:intergenic 55.0%
TCCTCCATTCCGAGTCCATG+TGG - tig0022299:18881-18900 None:intergenic 55.0%
!! CGGCAATGGGCTAAACGTTC+AGG - tig0022299:18990-19009 None:intergenic 55.0%
GTTTAGCCCATTGCCGTCTC+CGG + tig0022299:18994-19013 Msa1398740:intron 55.0%
TTTAACCCATTGCCGCTCCC+CGG + tig0022299:19109-19128 Msa1398740:intron 55.0%
! CAGCACTTTGGTGGTTGCAC+TGG + tig0022299:19224-19243 Msa1398740:intron 55.0%
CTCATCTCCTGGCCTCAAGA+GGG - tig0022299:19861-19880 None:intergenic 55.0%
CCAGTCAAGTCCACCATCCT+CGG - tig0022299:20206-20225 None:intergenic 55.0%
TCCTGAGTGTTCGGTCATGG+TGG + tig0022299:20868-20887 Msa1398740:CDS 55.0%
TCCACCATGACCGAACACTC+AGG - tig0022299:20872-20891 None:intergenic 55.0%
!! GGAAGGCATTGAACCTCCCA+TGG + tig0022299:20913-20932 Msa1398740:CDS 55.0%
!! AGGCATTGAACCTCCCATGG+TGG + tig0022299:20916-20935 Msa1398740:CDS 55.0%
TCGGCAGGGTGCAGATTTGA+TGG + tig0022299:21008-21027 Msa1398740:intron 55.0%
GCAGGGTGCAGATTTGATGG+CGG + tig0022299:21011-21030 Msa1398740:intron 55.0%
! CAGGGTGCAGATTTGATGGC+GGG + tig0022299:21012-21031 Msa1398740:intron 55.0%
CATGGAGCAATCGTTCCACC+AGG - tig0022299:21054-21073 None:intergenic 55.0%
GGTGGAACGATTGCTCCATG+TGG + tig0022299:21054-21073 Msa1398740:CDS 55.0%
GGAACGATTGCTCCATGTGG+CGG + tig0022299:21057-21076 Msa1398740:CDS 55.0%
CCAGCAACATATCCGCCACA+TGG - tig0022299:21072-21091 None:intergenic 55.0%
!! CCATGTGGCGGATATGTTGC+TGG + tig0022299:21069-21088 Msa1398740:CDS 55.0%
ACCACAATCCACACCAAGCC+CGG - tig0022299:21139-21158 None:intergenic 55.0%
CCCCCGATGTGATACAGTTC+AGG + tig0022299:21382-21401 Msa1398740:CDS 55.0%
!! GGTTTGGTGTATGACCCCAC+AGG - tig0022299:21681-21700 None:intergenic 55.0%
GTGACCAAATCTCGTGCAGC+GGG + tig0022299:22230-22249 Msa1398740:three_prime_UTR 55.0%
CCCACATGGACTCGGAATGG+AGG + tig0022299:18877-18896 Msa1398740:intron 60.0%
GTTGTTGGGGAGTCCGGAGA+CGG - tig0022299:19010-19029 None:intergenic 60.0%
TTGTTAGGGAGTCCGGGGAG+CGG - tig0022299:19124-19143 None:intergenic 60.0%
GGGACGTGAAGCTCTTGACC+AGG + tig0022299:19268-19287 Msa1398740:CDS 60.0%
CCTCATCTCCTGGCCTCAAG+AGG - tig0022299:19862-19881 None:intergenic 60.0%
CCTCTTGAGGCCAGGAGATG+AGG + tig0022299:19859-19878 Msa1398740:intron 60.0%
CATCAGCTTGCCGAGGATGG+TGG + tig0022299:20193-20212 Msa1398740:intron 60.0%
!! CCGAGGATGGTGGACTTGAC+TGG + tig0022299:20203-20222 Msa1398740:CDS 60.0%
CCACAATCCACACCAAGCCC+GGG - tig0022299:21138-21157 None:intergenic 60.0%
TATCACATCGGGGGACGCGA+GGG - tig0022299:21376-21395 None:intergenic 60.0%
CCAGGAGTGGTACCCGCAAT+TGG - tig0022299:21702-21721 None:intergenic 60.0%
CCAATTGCGGGTACCACTCC+TGG + tig0022299:21699-21718 Msa1398740:CDS 60.0%
CTCACCCGCTGCACGAGATT+TGG - tig0022299:22237-22256 None:intergenic 60.0%
GGGAGTCCGGAGACGGCAAT+GGG - tig0022299:19003-19022 None:intergenic 65.0%
!! CCCGGGCTTGGTGTGGATTG+TGG + tig0022299:21135-21154 Msa1398740:CDS 65.0%
GTATCACATCGGGGGACGCG+AGG - tig0022299:21377-21396 None:intergenic 65.0%
GGGGAGTCCGGAGACGGCAA+TGG - tig0022299:19004-19023 None:intergenic 70.0%
GGAGTCCGGGGAGCGGCAAT+GGG - tig0022299:19117-19136 None:intergenic 70.0%
CACCAAGCCCGGGCGCAGAA+AGG - tig0022299:21128-21147 None:intergenic 70.0%
!! TTCTGCGCCCGGGCTTGGTG+TGG + tig0022299:21128-21147 Msa1398740:CDS 70.0%
GGGAGTCCGGGGAGCGGCAA+TGG - tig0022299:19118-19137 None:intergenic 75.0%
GCAGCGCGCCTTTCTGCGCC+CGG + tig0022299:21117-21136 Msa1398740:CDS 75.0%
CAGCGCGCCTTTCTGCGCCC+GGG + tig0022299:21118-21137 Msa1398740:CDS 75.0%
CGCCTTTCTGCGCCCGGGCT+TGG + tig0022299:21123-21142 Msa1398740:CDS 75.0%
CATCGGGGGACGCGAGGGAG+TGG - tig0022299:21371-21390 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0022299 gene 18120 22549 18120 ID=Msa1398740;Name=Msa1398740
tig0022299 mRNA 18120 22549 18120 ID=Msa1398740-mRNA-1;Parent=Msa1398740;Name=Msa1398740-mRNA-1;_AED=0.09;_eAED=0.09;_QI=34|0.7|0.72|1|1|0.90|11|443|394
tig0022299 exon 18120 18279 18120 ID=Msa1398740-mRNA-1:exon:16802;Parent=Msa1398740-mRNA-1
tig0022299 exon 18361 18433 18361 ID=Msa1398740-mRNA-1:exon:16803;Parent=Msa1398740-mRNA-1
tig0022299 exon 19264 19337 19264 ID=Msa1398740-mRNA-1:exon:16804;Parent=Msa1398740-mRNA-1
tig0022299 exon 20009 20122 20009 ID=Msa1398740-mRNA-1:exon:16805;Parent=Msa1398740-mRNA-1
tig0022299 exon 20199 20348 20199 ID=Msa1398740-mRNA-1:exon:16806;Parent=Msa1398740-mRNA-1
tig0022299 exon 20860 20937 20860 ID=Msa1398740-mRNA-1:exon:16807;Parent=Msa1398740-mRNA-1
tig0022299 exon 21015 21236 21015 ID=Msa1398740-mRNA-1:exon:16808;Parent=Msa1398740-mRNA-1
tig0022299 exon 21317 21403 21317 ID=Msa1398740-mRNA-1:exon:16809;Parent=Msa1398740-mRNA-1
tig0022299 exon 21615 21734 21615 ID=Msa1398740-mRNA-1:exon:16810;Parent=Msa1398740-mRNA-1
tig0022299 exon 21866 21946 21866 ID=Msa1398740-mRNA-1:exon:16811;Parent=Msa1398740-mRNA-1
tig0022299 exon 22047 22549 22047 ID=Msa1398740-mRNA-1:exon:16812;Parent=Msa1398740-mRNA-1
tig0022299 five_prime_UTR 18120 18153 18120 ID=Msa1398740-mRNA-1:five_prime_utr;Parent=Msa1398740-mRNA-1
tig0022299 CDS 18154 18279 18154 ID=Msa1398740-mRNA-1:cds;Parent=Msa1398740-mRNA-1
tig0022299 CDS 18361 18433 18361 ID=Msa1398740-mRNA-1:cds;Parent=Msa1398740-mRNA-1
tig0022299 CDS 19264 19337 19264 ID=Msa1398740-mRNA-1:cds;Parent=Msa1398740-mRNA-1
tig0022299 CDS 20009 20122 20009 ID=Msa1398740-mRNA-1:cds;Parent=Msa1398740-mRNA-1
tig0022299 CDS 20199 20348 20199 ID=Msa1398740-mRNA-1:cds;Parent=Msa1398740-mRNA-1
tig0022299 CDS 20860 20937 20860 ID=Msa1398740-mRNA-1:cds;Parent=Msa1398740-mRNA-1
tig0022299 CDS 21015 21236 21015 ID=Msa1398740-mRNA-1:cds;Parent=Msa1398740-mRNA-1
tig0022299 CDS 21317 21403 21317 ID=Msa1398740-mRNA-1:cds;Parent=Msa1398740-mRNA-1
tig0022299 CDS 21615 21734 21615 ID=Msa1398740-mRNA-1:cds;Parent=Msa1398740-mRNA-1
tig0022299 CDS 21866 21946 21866 ID=Msa1398740-mRNA-1:cds;Parent=Msa1398740-mRNA-1
tig0022299 CDS 22047 22106 22047 ID=Msa1398740-mRNA-1:cds;Parent=Msa1398740-mRNA-1
tig0022299 three_prime_UTR 22107 22549 22107 ID=Msa1398740-mRNA-1:three_prime_utr;Parent=Msa1398740-mRNA-1
Gene Sequence

>Msa1398740

ATGTTGAGCATAACGTGCGCCTTCTCTGCTTATCCTACGCATCCCGTTCGAATCTCCATTACAACAACATCTACCATTCGCTATGCCTCTCGCTTCTCTGTTCCTATCAATCCCTTCGTTCCAGAGGTTATTGAAGCCGTTGATGCATTGCATTCAGAATTCAGAGCAGTGGATAATTTAGTTGCATACAATACCACCCCTGGGGGACGTGAAGCTCTTGACCAGGCTTTTGCAGAAATTGTTGGAGCAGAATCAGCTATTGTTCGTTCACAGCTTTTGGCAGTTGCTGGTGCTCCATATGACACATTAGAGGAAGTAATTGGGAAAAGGGACTCTGGTGGTTTGGGTTCCCTTCAAGATTTTGGGGTGAAATACCGAGAAGTTCCGCTTGCCGAGGATGGTGGACTTGACTGGAATGCACTGATGCATGCTGTCAAACCCGAAACAAAATGTGCACTCATACAGAGGTCATGTGGTTATTCATGGCGTCAGAGTTTGAGTGTTAATGACATAGGGAGAGCGATACAAATTATCAAAATGCAAAATCCTGAGTGTTCGGTCATGGTGGATAATTGCTATGGGGAACTTGTGGAAGGCATTGAACCTCCCATGGTGGGTGCAGATTTGATGGCGGGCAGTTTGATAAAGAATCCTGGTGGAACGATTGCTCCATGTGGCGGATATGTTGCTGGGAAAAAGAAATTGGTTGAAGCAGCTGCAGCGCGCCTTTCTGCGCCCGGGCTTGGTGTGGATTGTGGTTCAACTCCCGGTGATATCATGAGAGCCTTTTTTCAGGGATTATTTCTTTCACCTCAAATGGTTGGGGAAGCAATCAAGGGTTCCTTCCTGATTGCTGAAGTTCTGGCATCTAAGGGTTATAAAGTGCAGCCACTCCCTCGCGTCCCCCGATGTGATACAGTTCAGGCTGTACAACTTGGAAGCCGTGAGCGTCTCCTTGCTTTTTGTGAGGCTGTTCAGAGAAGCTCTCCTGTGGGGTCATACACCAAACCAATTGCGGGTACCACTCCTGGATATGCATCAGAGGTTATCTTTGCCGATGGAACCTTCATTGATGGAAGTACTAGTGAGCTTTCATGTGATGGACCTCTTAGAGAGCCATTTGCTGGTGGCACTCATTGGACTCAATGGGGACTAGTCCTAGGAGAAGTTCTGAAATCTATATGA

Protein sequence

>Msa1398740

MLSITCAFSAYPTHPVRISITTTSTIRYASRFSVPINPFVPEVIEAVDALHSEFRAVDNLVAYNTTPGGREALDQAFAEIVGAESAIVRSQLLAVAGAPYDTLEEVIGKRDSGGLGSLQDFGVKYREVPLAEDGGLDWNALMHAVKPETKCALIQRSCGYSWRQSLSVNDIGRAIQIIKMQNPECSVMVDNCYGELVEGIEPPMVGADLMAGSLIKNPGGTIAPCGGYVAGKKKLVEAAAARLSAPGLGVDCGSTPGDIMRAFFQGLFLSPQMVGEAIKGSFLIAEVLASKGYKVQPLPRVPRCDTVQAVQLGSRERLLAFCEAVQRSSPVGSYTKPIAGTTPGYASEVIFADGTFIDGSTSELSCDGPLREPFAGGTHWTQWGLVLGEVLKSI*