AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0654640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0654640 MtrunA17_Chr4g0051761 90.398 427 32 2 1 426 23 441 0.0 799
Msa0654640 MtrunA17_Chr4g0051711 82.759 435 74 1 1 434 1 435 0.0 747
Msa0654640 MtrunA17_Chr4g0051701 84.149 429 66 2 1 427 1 429 0.0 746
Msa0654640 MtrunA17_Chr4g0051681 82.558 430 73 2 7 434 8 437 0.0 738
Msa0654640 MtrunA17_Chr4g0051821 81.517 422 78 0 7 428 8 429 0.0 728
Msa0654640 MtrunA17_Chr4g0051731 81.754 422 67 1 13 434 1 412 0.0 717
Msa0654640 MtrunA17_Chr6g0468811 77.829 433 95 1 1 432 1 433 0.0 712
Msa0654640 MtrunA17_Chr6g0468791 77.176 425 91 3 3 426 2 421 0.0 666
Msa0654640 MtrunA17_Chr2g0292581 60.147 409 153 4 9 415 12 412 0.0 535
Msa0654640 MtrunA17_Chr1g0173751 62.113 388 138 2 29 415 33 412 0.0 526
Msa0654640 MtrunA17_Chr1g0173761 58.810 420 160 4 1 415 1 412 0.0 525
Msa0654640 MtrunA17_Chr2g0292621 58.234 419 163 3 1 415 1 411 0.0 520
Msa0654640 MtrunA17_Chr2g0292611 57.576 429 152 3 9 415 31 451 0.0 518
Msa0654640 MtrunA17_Chr4g0051791 72.785 316 52 2 113 428 2 283 7.94e-164 462
Msa0654640 MtrunA17_Chr8g0353201 44.286 420 211 8 1 411 1 406 8.20e-129 378
Msa0654640 MtrunA17_Chr1g0180281 42.654 422 219 9 1 412 5 413 2.98e-122 362
Msa0654640 MtrunA17_Chr1g0180271 42.237 438 223 11 1 427 5 423 7.42e-122 360
Msa0654640 MtrunA17_Chr6g0487311 41.315 426 225 8 1 409 1 418 1.54e-121 360
Msa0654640 MtrunA17_Chr6g0487401 42.446 417 199 7 1 409 33 416 2.15e-120 357
Msa0654640 MtrunA17_Chr6g0471901 38.015 413 188 7 7 412 8 359 1.99e-97 296
Msa0654640 MtrunA17_Chr2g0292641 67.284 162 53 0 254 415 1 162 5.19e-78 239
Msa0654640 MtrunA17_Chr2g0292631 54.070 172 71 1 11 182 15 178 4.82e-61 196
Msa0654640 MtrunA17_Chr1g0162771 40.359 223 122 4 1 215 1 220 1.38e-52 176
Msa0654640 MtrunA17_Chr4g0051801 85.263 95 13 1 1 94 1 95 2.00e-51 168
Msa0654640 MtrunA17_Chr1g0162761 60.563 71 28 0 313 383 2 72 2.10e-25 98.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0654640 AT5G61820.2 56.386 415 160 7 11 411 12 419 3.96e-163 468
Msa0654640 AT5G61820.1 56.386 415 160 7 11 411 12 419 3.96e-163 468

Find 130 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAATTTCCTCGTTGTAAA+TGG 0.197819 4_3:+62897748 Msa0654640:three_prime_UTR
CCATTACTCCAGTGTGTTCT+TGG 0.254712 4_3:-62897515 None:intergenic
CAGAAGGGTCCGAGGATAAA+TGG 0.264972 4_3:+62896214 Msa0654640:CDS
ATCTAAGATACACAGTAAAA+TGG 0.267275 4_3:+62896439 Msa0654640:CDS
AATTTCAAAGTAGTCTTCTT+AGG 0.275523 4_3:-62895575 None:intergenic
CAGGTCCTAACTCGAATTTC+GGG 0.281315 4_3:-62895840 None:intergenic
CCAGGTCCTAACTCGAATTT+CGG 0.291077 4_3:-62895841 None:intergenic
GGAATTGGATCCACCCTATA+TGG 0.332124 4_3:+62897005 Msa0654640:CDS
TGGAAATTACCTGTCCATAT+AGG 0.336191 4_3:-62897019 None:intergenic
CAAGAACACACTGGAGTAAT+GGG 0.339184 4_3:+62897516 Msa0654640:CDS
TGTTGCTGTTCCTCGTGTTT+CGG 0.340641 4_3:-62896142 None:intergenic
CATCAGCATTCAGGTGGAAT+TGG 0.345957 4_3:+62896990 Msa0654640:CDS
GGAAATTACCTGTCCATATA+GGG 0.348859 4_3:-62897018 None:intergenic
TAAGTTTCATGGAGAGGTAT+AGG 0.349623 4_3:-62895961 None:intergenic
TCCATACCACGTTATGGAAA+TGG 0.368210 4_3:+62897372 Msa0654640:CDS
GGTGTTGCACATCAGCATTC+AGG 0.372185 4_3:+62896981 Msa0654640:CDS
ATCTGATAGTTTCAAAGTAT+TGG 0.375958 4_3:-62896514 None:intergenic
ACACAGTAAAATGGGTTGAT+TGG 0.378269 4_3:+62896448 Msa0654640:CDS
TACTTATATGATAATATAAC+TGG 0.378444 4_3:+62897646 Msa0654640:three_prime_UTR
TTATGCAGATTACTCTAAAT+AGG 0.381916 4_3:-62897832 None:intergenic
GCAATACTTCTGCTATTGTT+TGG 0.383102 4_3:+62895754 Msa0654640:CDS
GAGTAGAATGTCTGAGTTGA+TGG 0.383708 4_3:-62897575 None:intergenic
TGAAACTTATCTCCATCATT+GGG 0.386239 4_3:+62895975 Msa0654640:CDS
ATGAAACTTATCTCCATCAT+TGG 0.388395 4_3:+62895974 Msa0654640:CDS
ATCTCTATACCGAAAGGTTC+CGG 0.388605 4_3:-62896171 None:intergenic
TTGTCCCCGAAATTCGAGTT+AGG 0.393897 4_3:+62895835 Msa0654640:CDS
CGTGGCGTGGAGGATAAGTT+AGG 0.394688 4_3:+62896264 Msa0654640:CDS
AATGTTACGGTGGATGAATA+TGG 0.394757 4_3:+62896315 Msa0654640:CDS
TGTTCTTCCATACCACGTTA+TGG 0.396127 4_3:+62897366 Msa0654640:CDS
GAGGAACAGTGGCATATGTC+AGG 0.396372 4_3:+62896086 Msa0654640:CDS
AATGATGGAGATAAGTTTCA+TGG 0.396431 4_3:-62895972 None:intergenic
CTTAGATAGAGGCTTCTCTT+TGG 0.397938 4_3:-62896423 None:intergenic
CACAGTAAAATGGGTTGATT+GGG 0.401945 4_3:+62896449 Msa0654640:CDS
TCAATTATATATATCTTAAC+AGG 0.405782 4_3:-62896486 None:intergenic
ACTGGTGGCTATGTGATCTA+TGG 0.406576 4_3:+62896960 Msa0654640:CDS
CAGTGTGGCTGCAAGTGTTT+GGG 0.408628 4_3:+62897789 Msa0654640:three_prime_UTR
ACAGATATTCCGGAACCTTT+CGG 0.411010 4_3:+62896162 Msa0654640:CDS
ATGAATATGGAAGGTCTATA+AGG 0.411102 4_3:+62896328 Msa0654640:CDS
TATAACTGGCGTGTCATTGA+TGG 0.411833 4_3:+62897660 Msa0654640:three_prime_UTR
TTACTGTGTATCTTAGATAG+AGG 0.415894 4_3:-62896434 None:intergenic
ACATAGCCACCAGTTTGAAA+TGG 0.422102 4_3:-62896951 None:intergenic
TCAGTGTGGCTGCAAGTGTT+TGG 0.424711 4_3:+62897788 Msa0654640:three_prime_UTR
AGGAACAGCAACAGATATTC+CGG 0.425269 4_3:+62896152 Msa0654640:CDS
AATACTCTTGGACAATACTT+TGG 0.427743 4_3:+62896111 Msa0654640:CDS
TCTATAAGGCCAGATTATAA+AGG 0.432793 4_3:+62896342 Msa0654640:CDS
TTGAGTGCAATATGATCTCT+TGG 0.433417 4_3:-62895901 None:intergenic
AACCAACCTCCTTTATAATC+TGG 0.436373 4_3:-62896351 None:intergenic
CTTGGACAATACTTTGGCAT+TGG 0.442628 4_3:+62896117 Msa0654640:CDS
TTGAGTCTTGTATGTGTGAT+TGG 0.444540 4_3:+62897864 Msa0654640:three_prime_UTR
GTTGCTGTTCTGCGACCAAT+AGG 0.447175 4_3:-62897548 None:intergenic
TCAATTATCGTGACGGAACC+TGG 0.451783 4_3:-62897453 None:intergenic
CCAAGAACACACTGGAGTAA+TGG 0.458171 4_3:+62897515 Msa0654640:CDS
ATCGTGACGGAACCTGGTTT+AGG 0.460036 4_3:-62897447 None:intergenic
TCCATTTCCATAACGTGGTA+TGG 0.460705 4_3:-62897373 None:intergenic
TCTAAGATACACAGTAAAAT+GGG 0.465087 4_3:+62896440 Msa0654640:CDS
AATGAGACAGGCTACATTGT+AGG 0.466676 4_3:+62897408 Msa0654640:CDS
GAACCTTTCGGTATAGAGAT+AGG 0.466983 4_3:+62896174 Msa0654640:CDS
CTCCACGCCACGTGTATCAA+TGG 0.468315 4_3:-62896253 None:intergenic
CCGAAATTCGAGTTAGGACC+TGG 0.469785 4_3:+62895841 Msa0654640:CDS
CATAGCCACCAGTTTGAAAT+GGG 0.475271 4_3:-62896950 None:intergenic
TGGGAAAGGATTTGTTGTGC+AGG 0.482979 4_3:+62897808 Msa0654640:three_prime_UTR
TCTTTATTGATAACTGATCC+AGG 0.484752 4_3:-62895859 None:intergenic
AGTAATCTGCATAATTATGC+AGG 0.485556 4_3:+62897841 Msa0654640:three_prime_UTR
GATTGGAGAATGGCACAGTT+TGG 0.486571 4_3:+62897881 Msa0654640:three_prime_UTR
GTGCGAGCTTTATAATGTTA+CGG 0.488201 4_3:+62896302 Msa0654640:CDS
AAACTATCAGATAACTCAAA+AGG 0.488445 4_3:+62896525 Msa0654640:CDS
GGGAAAGGATTTGTTGTGCA+GGG 0.500831 4_3:+62897809 Msa0654640:three_prime_UTR
ACAAGTCTCCCATTTCAAAC+TGG 0.501575 4_3:+62896942 Msa0654640:CDS
TTGTACACAGTGCAAGTTGA+AGG 0.504293 4_3:+62896386 Msa0654640:CDS
AGAAGGGTCCGAGGATAAAT+GGG 0.505079 4_3:+62896215 Msa0654640:CDS
ATCTTGCAACACCCCAATGA+TGG 0.507927 4_3:-62895987 None:intergenic
GCCACTGAAAATACAAACTT+AGG 0.511667 4_3:-62895733 None:intergenic
GGTTCCGTCACGATAATTGA+TGG 0.511998 4_3:+62897456 Msa0654640:CDS
GACCCTTCTGAAACCTCTGC+AGG 0.513932 4_3:-62896201 None:intergenic
ACAAACCACAAGGAGCGAAA+TGG 0.515563 4_3:+62896900 Msa0654640:CDS
ATATGTCAGGGAAATACTCT+TGG 0.523938 4_3:+62896099 Msa0654640:CDS
TATGGAAATGGAAACGAAGC+AGG 0.525207 4_3:+62897384 Msa0654640:CDS
TTTCATGATTTCAGGATGGG+AGG 0.525371 4_3:+62897337 Msa0654640:intron
CACAGCCATTTCGCTCCTTG+TGG 0.529057 4_3:-62896905 None:intergenic
GTCACACACACAAGAAATGA+TGG 0.529849 4_3:+62896027 Msa0654640:CDS
TCCTCGTTGTAAATGGTGCA+AGG 0.532465 4_3:+62897755 Msa0654640:three_prime_UTR
AGCTTAATTCAATTCATCAA+AGG 0.535584 4_3:+62895549 Msa0654640:five_prime_UTR
CAGAACTTTGAAGCATCCAT+TGG 0.546927 4_3:-62896050 None:intergenic
GGCCAGATTATAAAGGAGGT+TGG 0.552111 4_3:+62896349 Msa0654640:CDS
TGGATCCACCCTATATGGAC+AGG 0.552599 4_3:+62897010 Msa0654640:CDS
TTCACAAAAGGTAAATCAAG+AGG 0.553544 4_3:-62895607 None:intergenic
AACGAAGCAGGAAATGAGAC+AGG 0.557757 4_3:+62897396 Msa0654640:CDS
TTCATGATTTCAGGATGGGA+GGG 0.563353 4_3:+62897338 Msa0654640:intron
GTGGCGTGGAGGATAAGTTA+GGG 0.565799 4_3:+62896265 Msa0654640:CDS
ATGGCTGTGTTAATGTAAAG+AGG 0.565801 4_3:+62896919 Msa0654640:CDS
TGCCATTGATACACGTGGCG+TGG 0.583642 4_3:+62896251 Msa0654640:CDS
TTCACCATCAATTATCGTGA+CGG 0.588512 4_3:-62897460 None:intergenic
ATTAAGCACCCATTTATCCT+CGG 0.597914 4_3:-62896223 None:intergenic
TCGTTTCCATTTCCATAACG+TGG 0.598819 4_3:-62897378 None:intergenic
ACACAGTGCAAGTTGAAGGA+AGG 0.600179 4_3:+62896390 Msa0654640:CDS
AAGGTTTATTTATTTCAGTG+TGG 0.602970 4_3:+62897774 Msa0654640:three_prime_UTR
GAACTCTGATCATGATTGCA+AGG 0.603932 4_3:+62896551 Msa0654640:CDS
ACACAAGAAATGATGGCCAA+TGG 0.605078 4_3:+62896034 Msa0654640:CDS
TCAACTTGTTATCCTAAACC+AGG 0.605101 4_3:+62897435 Msa0654640:CDS
GCTGAAGTAGTTGATGAAGC+TGG 0.605489 4_3:+62895934 Msa0654640:CDS
GTTCTGATATTGTGAAAGTG+AGG 0.606469 4_3:+62896067 Msa0654640:CDS
AATCCTGCAGAGGTTTCAGA+AGG 0.606888 4_3:+62896198 Msa0654640:CDS
AGGAACAGTGGCATATGTCA+GGG 0.613732 4_3:+62896087 Msa0654640:CDS
GAATGTCTGAGTTGATGGTA+TGG 0.615297 4_3:-62897570 None:intergenic
TTGTATGTGTGATTGGAGAA+TGG 0.621583 4_3:+62897871 Msa0654640:three_prime_UTR
AATTAAGCTTACAATAAACA+AGG 0.623359 4_3:-62895535 None:intergenic
TGGCTGCAAGTGTTTGGGAA+AGG 0.625549 4_3:+62897794 Msa0654640:three_prime_UTR
TGGAGATAAGTTTCATGGAG+AGG 0.630553 4_3:-62895967 None:intergenic
AGTCTCCCATTTCAAACTGG+TGG 0.630697 4_3:+62896945 Msa0654640:CDS
AATTACCTGTCCATATAGGG+TGG 0.632679 4_3:-62897015 None:intergenic
CATTGATACACGTGGCGTGG+AGG 0.634415 4_3:+62896254 Msa0654640:CDS
ATCTTGCAGCACAAACCACA+AGG 0.636798 4_3:+62896890 Msa0654640:CDS
TTACAACGAGGAAATTTGTG+AGG 0.636821 4_3:-62897744 None:intergenic
ATAAGGCCAGATTATAAAGG+AGG 0.643505 4_3:+62896345 Msa0654640:CDS
TTACGGTGGATGAATATGGA+AGG 0.644081 4_3:+62896319 Msa0654640:CDS
TTACCTATCTCTATACCGAA+AGG 0.645143 4_3:-62896177 None:intergenic
AACAATAGCCAAGAACACAC+TGG 0.645606 4_3:+62897507 Msa0654640:CDS
TTAGGGAGGAAAATTAGTGA+CGG 0.645999 4_3:+62897708 Msa0654640:three_prime_UTR
GTTGCACATCAGCATTCAGG+TGG 0.648323 4_3:+62896984 Msa0654640:CDS
GGCATTGGATCCGAAACACG+AGG 0.662444 4_3:+62896132 Msa0654640:CDS
AGAGATAGGTAATCCTGCAG+AGG 0.665825 4_3:+62896188 Msa0654640:CDS
AGAGGTTTCAGAAGGGTCCG+AGG 0.677663 4_3:+62896206 Msa0654640:CDS
GAAACTTATCTCCATCATTG+GGG 0.685791 4_3:+62895976 Msa0654640:CDS
AAGAACACACTGGAGTAATG+GGG 0.686123 4_3:+62897517 Msa0654640:CDS
CGAGCTTTATAATGTTACGG+TGG 0.698006 4_3:+62896305 Msa0654640:CDS
GTTCATGCCATTGATACACG+TGG 0.703873 4_3:+62896246 Msa0654640:CDS
AGGTCCTAACTCGAATTTCG+GGG 0.706831 4_3:-62895839 None:intergenic
ATCCTGCAGAGGTTTCAGAA+GGG 0.717685 4_3:+62896199 Msa0654640:CDS
ATTGTGAAAGTGAGGAACAG+TGG 0.726055 4_3:+62896075 Msa0654640:CDS
ACCTTGCACCATTTACAACG+AGG 0.752551 4_3:-62897756 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTACTAATATATATTTTTC+TGG + chr4_3:62895689-62895708 Msa0654640:five_prime_UTR 10.0%
!!! ATTACTAATATATATTTTTC+TGG + chr4_3:62895689-62895708 Msa0654640:five_prime_UTR 10.0%
!!! AAATGTATTATTTTCACAAA+AGG - chr4_3:62895622-62895641 None:intergenic 15.0%
!! TCAATTATATATATCTTAAC+AGG - chr4_3:62896489-62896508 None:intergenic 15.0%
!! TATAATCTATCTTTAACTAA+TGG - chr4_3:62897042-62897061 None:intergenic 15.0%
!! TATACTAATTCTTAAATAGT+TGG + chr4_3:62897058-62897077 Msa0654640:intron 15.0%
!! TACTTATATGATAATATAAC+TGG + chr4_3:62897646-62897665 Msa0654640:three_prime_UTR 15.0%
!!! AAATGTATTATTTTCACAAA+AGG - chr4_3:62895622-62895641 None:intergenic 15.0%
!! TCAATTATATATATCTTAAC+AGG - chr4_3:62896489-62896508 None:intergenic 15.0%
!! TATAATCTATCTTTAACTAA+TGG - chr4_3:62897042-62897061 None:intergenic 15.0%
!! TATACTAATTCTTAAATAGT+TGG + chr4_3:62897058-62897077 Msa0654640:intron 15.0%
!! TACTTATATGATAATATAAC+TGG + chr4_3:62897646-62897665 Msa0654640:three_prime_UTR 15.0%
!! AATTAAGCTTACAATAAACA+AGG - chr4_3:62895538-62895557 None:intergenic 20.0%
!! TATTACATGAACAAATAGAA+GGG - chr4_3:62897161-62897180 None:intergenic 20.0%
!!! TTGCTTGTTAATTAAACATT+TGG - chr4_3:62897201-62897220 None:intergenic 20.0%
!! ATGTTTAATTAACAAGCAAA+TGG + chr4_3:62897202-62897221 Msa0654640:intron 20.0%
!! TACTAGAAAAAGCAAAATTA+GGG + chr4_3:62897691-62897710 Msa0654640:three_prime_UTR 20.0%
!! AATTAAGCTTACAATAAACA+AGG - chr4_3:62895538-62895557 None:intergenic 20.0%
!! TATTACATGAACAAATAGAA+GGG - chr4_3:62897161-62897180 None:intergenic 20.0%
!!! TTGCTTGTTAATTAAACATT+TGG - chr4_3:62897201-62897220 None:intergenic 20.0%
!! ATGTTTAATTAACAAGCAAA+TGG + chr4_3:62897202-62897221 Msa0654640:intron 20.0%
!! TACTAGAAAAAGCAAAATTA+GGG + chr4_3:62897691-62897710 Msa0654640:three_prime_UTR 20.0%
! AGCTTAATTCAATTCATCAA+AGG + chr4_3:62895549-62895568 Msa0654640:five_prime_UTR 25.0%
! AATTTCAAAGTAGTCTTCTT+AGG - chr4_3:62895578-62895597 None:intergenic 25.0%
! TTCAAAAAAGAACTTAAGCA+TGG - chr4_3:62895784-62895803 None:intergenic 25.0%
!! ATCTAAGATACACAGTAAAA+TGG + chr4_3:62896439-62896458 Msa0654640:CDS 25.0%
!! TCTAAGATACACAGTAAAAT+GGG + chr4_3:62896440-62896459 Msa0654640:CDS 25.0%
! ATCTGATAGTTTCAAAGTAT+TGG - chr4_3:62896517-62896536 None:intergenic 25.0%
! AAACTATCAGATAACTCAAA+AGG + chr4_3:62896525-62896544 Msa0654640:CDS 25.0%
!! TTTATATTTTGTGAACTGAC+TGG - chr4_3:62896632-62896651 None:intergenic 25.0%
! AGACAAACAAACTACAAATT+TGG - chr4_3:62896773-62896792 None:intergenic 25.0%
! GATTAAAGATGTATATGAGT+CGG + chr4_3:62897097-62897116 Msa0654640:intron 25.0%
! CTATTACATGAACAAATAGA+AGG - chr4_3:62897162-62897181 None:intergenic 25.0%
!! CATGTAATAGTTTTCAATTG+AGG + chr4_3:62897172-62897191 Msa0654640:intron 25.0%
! AAATTGTGTTTCATGATTTC+AGG + chr4_3:62897329-62897348 Msa0654640:intron 25.0%
! CTACTAGAAAAAGCAAAATT+AGG + chr4_3:62897690-62897709 Msa0654640:three_prime_UTR 25.0%
! AAGGTTTATTTATTTCAGTG+TGG + chr4_3:62897774-62897793 Msa0654640:three_prime_UTR 25.0%
! TTATGCAGATTACTCTAAAT+AGG - chr4_3:62897835-62897854 None:intergenic 25.0%
! AGCTTAATTCAATTCATCAA+AGG + chr4_3:62895549-62895568 Msa0654640:five_prime_UTR 25.0%
! AATTTCAAAGTAGTCTTCTT+AGG - chr4_3:62895578-62895597 None:intergenic 25.0%
! TTCAAAAAAGAACTTAAGCA+TGG - chr4_3:62895784-62895803 None:intergenic 25.0%
!! ATCTAAGATACACAGTAAAA+TGG + chr4_3:62896439-62896458 Msa0654640:CDS 25.0%
!! TCTAAGATACACAGTAAAAT+GGG + chr4_3:62896440-62896459 Msa0654640:CDS 25.0%
! ATCTGATAGTTTCAAAGTAT+TGG - chr4_3:62896517-62896536 None:intergenic 25.0%
! AAACTATCAGATAACTCAAA+AGG + chr4_3:62896525-62896544 Msa0654640:CDS 25.0%
!! TTTATATTTTGTGAACTGAC+TGG - chr4_3:62896632-62896651 None:intergenic 25.0%
! AGACAAACAAACTACAAATT+TGG - chr4_3:62896773-62896792 None:intergenic 25.0%
! GATTAAAGATGTATATGAGT+CGG + chr4_3:62897097-62897116 Msa0654640:intron 25.0%
! CTATTACATGAACAAATAGA+AGG - chr4_3:62897162-62897181 None:intergenic 25.0%
!! CATGTAATAGTTTTCAATTG+AGG + chr4_3:62897172-62897191 Msa0654640:intron 25.0%
! AAATTGTGTTTCATGATTTC+AGG + chr4_3:62897329-62897348 Msa0654640:intron 25.0%
! CTACTAGAAAAAGCAAAATT+AGG + chr4_3:62897690-62897709 Msa0654640:three_prime_UTR 25.0%
! AAGGTTTATTTATTTCAGTG+TGG + chr4_3:62897774-62897793 Msa0654640:three_prime_UTR 25.0%
! TTATGCAGATTACTCTAAAT+AGG - chr4_3:62897835-62897854 None:intergenic 25.0%
TTCACAAAAGGTAAATCAAG+AGG - chr4_3:62895610-62895629 None:intergenic 30.0%
! ACCTAAGTTTGTATTTTCAG+TGG + chr4_3:62895732-62895751 Msa0654640:CDS 30.0%
! TCTTTATTGATAACTGATCC+AGG - chr4_3:62895862-62895881 None:intergenic 30.0%
! AATGATGGAGATAAGTTTCA+TGG - chr4_3:62895975-62895994 None:intergenic 30.0%
ATGAAACTTATCTCCATCAT+TGG + chr4_3:62895974-62895993 Msa0654640:CDS 30.0%
TGAAACTTATCTCCATCATT+GGG + chr4_3:62895975-62895994 Msa0654640:CDS 30.0%
AATACTCTTGGACAATACTT+TGG + chr4_3:62896111-62896130 Msa0654640:CDS 30.0%
ATGAATATGGAAGGTCTATA+AGG + chr4_3:62896328-62896347 Msa0654640:CDS 30.0%
TCTATAAGGCCAGATTATAA+AGG + chr4_3:62896342-62896361 Msa0654640:CDS 30.0%
TTACTGTGTATCTTAGATAG+AGG - chr4_3:62896437-62896456 None:intergenic 30.0%
ATATAACACTAGTCCATTGT+TGG + chr4_3:62896814-62896833 Msa0654640:intron 30.0%
TATAACACTAGTCCATTGTT+GGG + chr4_3:62896815-62896834 Msa0654640:intron 30.0%
!! TGCTTGTTTTCATTGTATAC+TGG + chr4_3:62897255-62897274 Msa0654640:intron 30.0%
!!! TACTCGTTCTTCATTTTTTG+TGG + chr4_3:62897593-62897612 Msa0654640:CDS 30.0%
TAGAAAAAGCAAAATTAGGG+AGG + chr4_3:62897694-62897713 Msa0654640:three_prime_UTR 30.0%
ACAAATTTCCTCGTTGTAAA+TGG + chr4_3:62897748-62897767 Msa0654640:three_prime_UTR 30.0%
AGTAATCTGCATAATTATGC+AGG + chr4_3:62897841-62897860 Msa0654640:three_prime_UTR 30.0%
TTCACAAAAGGTAAATCAAG+AGG - chr4_3:62895610-62895629 None:intergenic 30.0%
! ACCTAAGTTTGTATTTTCAG+TGG + chr4_3:62895732-62895751 Msa0654640:CDS 30.0%
! TCTTTATTGATAACTGATCC+AGG - chr4_3:62895862-62895881 None:intergenic 30.0%
! AATGATGGAGATAAGTTTCA+TGG - chr4_3:62895975-62895994 None:intergenic 30.0%
ATGAAACTTATCTCCATCAT+TGG + chr4_3:62895974-62895993 Msa0654640:CDS 30.0%
TGAAACTTATCTCCATCATT+GGG + chr4_3:62895975-62895994 Msa0654640:CDS 30.0%
AATACTCTTGGACAATACTT+TGG + chr4_3:62896111-62896130 Msa0654640:CDS 30.0%
ATGAATATGGAAGGTCTATA+AGG + chr4_3:62896328-62896347 Msa0654640:CDS 30.0%
TCTATAAGGCCAGATTATAA+AGG + chr4_3:62896342-62896361 Msa0654640:CDS 30.0%
TTACTGTGTATCTTAGATAG+AGG - chr4_3:62896437-62896456 None:intergenic 30.0%
ATATAACACTAGTCCATTGT+TGG + chr4_3:62896814-62896833 Msa0654640:intron 30.0%
TATAACACTAGTCCATTGTT+GGG + chr4_3:62896815-62896834 Msa0654640:intron 30.0%
!! TGCTTGTTTTCATTGTATAC+TGG + chr4_3:62897255-62897274 Msa0654640:intron 30.0%
!!! TACTCGTTCTTCATTTTTTG+TGG + chr4_3:62897593-62897612 Msa0654640:CDS 30.0%
TAGAAAAAGCAAAATTAGGG+AGG + chr4_3:62897694-62897713 Msa0654640:three_prime_UTR 30.0%
ACAAATTTCCTCGTTGTAAA+TGG + chr4_3:62897748-62897767 Msa0654640:three_prime_UTR 30.0%
AGTAATCTGCATAATTATGC+AGG + chr4_3:62897841-62897860 Msa0654640:three_prime_UTR 30.0%
GCCACTGAAAATACAAACTT+AGG - chr4_3:62895736-62895755 None:intergenic 35.0%
GCAATACTTCTGCTATTGTT+TGG + chr4_3:62895754-62895773 Msa0654640:CDS 35.0%
TTGAGTGCAATATGATCTCT+TGG - chr4_3:62895904-62895923 None:intergenic 35.0%
! TAAGTTTCATGGAGAGGTAT+AGG - chr4_3:62895964-62895983 None:intergenic 35.0%
GAAACTTATCTCCATCATTG+GGG + chr4_3:62895976-62895995 Msa0654640:CDS 35.0%
GTTCTGATATTGTGAAAGTG+AGG + chr4_3:62896067-62896086 Msa0654640:CDS 35.0%
ATATGTCAGGGAAATACTCT+TGG + chr4_3:62896099-62896118 Msa0654640:CDS 35.0%
TTACCTATCTCTATACCGAA+AGG - chr4_3:62896180-62896199 None:intergenic 35.0%
ATTAAGCACCCATTTATCCT+CGG - chr4_3:62896226-62896245 None:intergenic 35.0%
! GTGCGAGCTTTATAATGTTA+CGG + chr4_3:62896302-62896321 Msa0654640:CDS 35.0%
AATGTTACGGTGGATGAATA+TGG + chr4_3:62896315-62896334 Msa0654640:CDS 35.0%
ATAAGGCCAGATTATAAAGG+AGG + chr4_3:62896345-62896364 Msa0654640:CDS 35.0%
AACCAACCTCCTTTATAATC+TGG - chr4_3:62896354-62896373 None:intergenic 35.0%
!! AAGTTGAAGGAAGGTTTTGA+GGG + chr4_3:62896399-62896418 Msa0654640:CDS 35.0%
!! ACACAGTAAAATGGGTTGAT+TGG + chr4_3:62896448-62896467 Msa0654640:CDS 35.0%
!! CACAGTAAAATGGGTTGATT+GGG + chr4_3:62896449-62896468 Msa0654640:CDS 35.0%
GTCAATGCATCAATGAATGT+TGG + chr4_3:62896599-62896618 Msa0654640:intron 35.0%
! AGATTTCAAGCTCGGTATTT+TGG - chr4_3:62896678-62896697 None:intergenic 35.0%
AAATACCGAGCTTGAAATCT+AGG + chr4_3:62896678-62896697 Msa0654640:intron 35.0%
CTCATTATGATACCCAACAA+TGG - chr4_3:62896830-62896849 None:intergenic 35.0%
ATGGCTGTGTTAATGTAAAG+AGG + chr4_3:62896919-62896938 Msa0654640:CDS 35.0%
GGAAATTACCTGTCCATATA+GGG - chr4_3:62897021-62897040 None:intergenic 35.0%
TGGAAATTACCTGTCCATAT+AGG - chr4_3:62897022-62897041 None:intergenic 35.0%
GTGTGAATAATTAGCAGTTG+AGG + chr4_3:62897224-62897243 Msa0654640:intron 35.0%
AATTAGCAGTTGAGGACTAT+CGG + chr4_3:62897232-62897251 Msa0654640:intron 35.0%
TGTGTTTCATGATTTCAGGA+TGG + chr4_3:62897333-62897352 Msa0654640:intron 35.0%
GTGTTTCATGATTTCAGGAT+GGG + chr4_3:62897334-62897353 Msa0654640:intron 35.0%
!! TCAACTTGTTATCCTAAACC+AGG + chr4_3:62897435-62897454 Msa0654640:CDS 35.0%
TTCACCATCAATTATCGTGA+CGG - chr4_3:62897463-62897482 None:intergenic 35.0%
TTAGGGAGGAAAATTAGTGA+CGG + chr4_3:62897708-62897727 Msa0654640:three_prime_UTR 35.0%
TTACAACGAGGAAATTTGTG+AGG - chr4_3:62897747-62897766 None:intergenic 35.0%
! TTGAGTCTTGTATGTGTGAT+TGG + chr4_3:62897864-62897883 Msa0654640:three_prime_UTR 35.0%
TTGTATGTGTGATTGGAGAA+TGG + chr4_3:62897871-62897890 Msa0654640:three_prime_UTR 35.0%
GCCACTGAAAATACAAACTT+AGG - chr4_3:62895736-62895755 None:intergenic 35.0%
GCAATACTTCTGCTATTGTT+TGG + chr4_3:62895754-62895773 Msa0654640:CDS 35.0%
TTGAGTGCAATATGATCTCT+TGG - chr4_3:62895904-62895923 None:intergenic 35.0%
! TAAGTTTCATGGAGAGGTAT+AGG - chr4_3:62895964-62895983 None:intergenic 35.0%
GAAACTTATCTCCATCATTG+GGG + chr4_3:62895976-62895995 Msa0654640:CDS 35.0%
GTTCTGATATTGTGAAAGTG+AGG + chr4_3:62896067-62896086 Msa0654640:CDS 35.0%
ATATGTCAGGGAAATACTCT+TGG + chr4_3:62896099-62896118 Msa0654640:CDS 35.0%
TTACCTATCTCTATACCGAA+AGG - chr4_3:62896180-62896199 None:intergenic 35.0%
ATTAAGCACCCATTTATCCT+CGG - chr4_3:62896226-62896245 None:intergenic 35.0%
! GTGCGAGCTTTATAATGTTA+CGG + chr4_3:62896302-62896321 Msa0654640:CDS 35.0%
AATGTTACGGTGGATGAATA+TGG + chr4_3:62896315-62896334 Msa0654640:CDS 35.0%
ATAAGGCCAGATTATAAAGG+AGG + chr4_3:62896345-62896364 Msa0654640:CDS 35.0%
AACCAACCTCCTTTATAATC+TGG - chr4_3:62896354-62896373 None:intergenic 35.0%
!! AAGTTGAAGGAAGGTTTTGA+GGG + chr4_3:62896399-62896418 Msa0654640:CDS 35.0%
!! ACACAGTAAAATGGGTTGAT+TGG + chr4_3:62896448-62896467 Msa0654640:CDS 35.0%
!! CACAGTAAAATGGGTTGATT+GGG + chr4_3:62896449-62896468 Msa0654640:CDS 35.0%
GTCAATGCATCAATGAATGT+TGG + chr4_3:62896599-62896618 Msa0654640:intron 35.0%
! AGATTTCAAGCTCGGTATTT+TGG - chr4_3:62896678-62896697 None:intergenic 35.0%
AAATACCGAGCTTGAAATCT+AGG + chr4_3:62896678-62896697 Msa0654640:intron 35.0%
CTCATTATGATACCCAACAA+TGG - chr4_3:62896830-62896849 None:intergenic 35.0%
ATGGCTGTGTTAATGTAAAG+AGG + chr4_3:62896919-62896938 Msa0654640:CDS 35.0%
GGAAATTACCTGTCCATATA+GGG - chr4_3:62897021-62897040 None:intergenic 35.0%
TGGAAATTACCTGTCCATAT+AGG - chr4_3:62897022-62897041 None:intergenic 35.0%
GTGTGAATAATTAGCAGTTG+AGG + chr4_3:62897224-62897243 Msa0654640:intron 35.0%
AATTAGCAGTTGAGGACTAT+CGG + chr4_3:62897232-62897251 Msa0654640:intron 35.0%
TGTGTTTCATGATTTCAGGA+TGG + chr4_3:62897333-62897352 Msa0654640:intron 35.0%
GTGTTTCATGATTTCAGGAT+GGG + chr4_3:62897334-62897353 Msa0654640:intron 35.0%
!! TCAACTTGTTATCCTAAACC+AGG + chr4_3:62897435-62897454 Msa0654640:CDS 35.0%
TTCACCATCAATTATCGTGA+CGG - chr4_3:62897463-62897482 None:intergenic 35.0%
TTAGGGAGGAAAATTAGTGA+CGG + chr4_3:62897708-62897727 Msa0654640:three_prime_UTR 35.0%
TTACAACGAGGAAATTTGTG+AGG - chr4_3:62897747-62897766 None:intergenic 35.0%
! TTGAGTCTTGTATGTGTGAT+TGG + chr4_3:62897864-62897883 Msa0654640:three_prime_UTR 35.0%
TTGTATGTGTGATTGGAGAA+TGG + chr4_3:62897871-62897890 Msa0654640:three_prime_UTR 35.0%
TGGAGATAAGTTTCATGGAG+AGG - chr4_3:62895970-62895989 None:intergenic 40.0%
GTCACACACACAAGAAATGA+TGG + chr4_3:62896027-62896046 Msa0654640:CDS 40.0%
ACACAAGAAATGATGGCCAA+TGG + chr4_3:62896034-62896053 Msa0654640:CDS 40.0%
!! CAGAACTTTGAAGCATCCAT+TGG - chr4_3:62896053-62896072 None:intergenic 40.0%
ATTGTGAAAGTGAGGAACAG+TGG + chr4_3:62896075-62896094 Msa0654640:CDS 40.0%
CTTGGACAATACTTTGGCAT+TGG + chr4_3:62896117-62896136 Msa0654640:CDS 40.0%
AGGAACAGCAACAGATATTC+CGG + chr4_3:62896152-62896171 Msa0654640:CDS 40.0%
ACAGATATTCCGGAACCTTT+CGG + chr4_3:62896162-62896181 Msa0654640:CDS 40.0%
ATCTCTATACCGAAAGGTTC+CGG - chr4_3:62896174-62896193 None:intergenic 40.0%
GAACCTTTCGGTATAGAGAT+AGG + chr4_3:62896174-62896193 Msa0654640:CDS 40.0%
! CGAGCTTTATAATGTTACGG+TGG + chr4_3:62896305-62896324 Msa0654640:CDS 40.0%
TTACGGTGGATGAATATGGA+AGG + chr4_3:62896319-62896338 Msa0654640:CDS 40.0%
! TTGTACACAGTGCAAGTTGA+AGG + chr4_3:62896386-62896405 Msa0654640:CDS 40.0%
!! CAAGTTGAAGGAAGGTTTTG+AGG + chr4_3:62896398-62896417 Msa0654640:CDS 40.0%
CTTAGATAGAGGCTTCTCTT+TGG - chr4_3:62896426-62896445 None:intergenic 40.0%
GAACTCTGATCATGATTGCA+AGG + chr4_3:62896551-62896570 Msa0654640:CDS 40.0%
ACAGTCCTAGATTTCAAGCT+CGG - chr4_3:62896686-62896705 None:intergenic 40.0%
CAGACTGTTGGATCAAAGAT+CGG - chr4_3:62896709-62896728 None:intergenic 40.0%
ACAAGTCTCCCATTTCAAAC+TGG + chr4_3:62896942-62896961 Msa0654640:CDS 40.0%
! CATAGCCACCAGTTTGAAAT+GGG - chr4_3:62896953-62896972 None:intergenic 40.0%
ACATAGCCACCAGTTTGAAA+TGG - chr4_3:62896954-62896973 None:intergenic 40.0%
AATTACCTGTCCATATAGGG+TGG - chr4_3:62897018-62897037 None:intergenic 40.0%
AGATGTATATGAGTCGGACA+CGG + chr4_3:62897103-62897122 Msa0654640:intron 40.0%
TTTCATGATTTCAGGATGGG+AGG + chr4_3:62897337-62897356 Msa0654640:intron 40.0%
TTCATGATTTCAGGATGGGA+GGG + chr4_3:62897338-62897357 Msa0654640:intron 40.0%
TGTTCTTCCATACCACGTTA+TGG + chr4_3:62897366-62897385 Msa0654640:CDS 40.0%
TCCATACCACGTTATGGAAA+TGG + chr4_3:62897372-62897391 Msa0654640:CDS 40.0%
TCCATTTCCATAACGTGGTA+TGG - chr4_3:62897376-62897395 None:intergenic 40.0%
TCGTTTCCATTTCCATAACG+TGG - chr4_3:62897381-62897400 None:intergenic 40.0%
TATGGAAATGGAAACGAAGC+AGG + chr4_3:62897384-62897403 Msa0654640:CDS 40.0%
AATGAGACAGGCTACATTGT+AGG + chr4_3:62897408-62897427 Msa0654640:CDS 40.0%
AACAATAGCCAAGAACACAC+TGG + chr4_3:62897507-62897526 Msa0654640:CDS 40.0%
CAAGAACACACTGGAGTAAT+GGG + chr4_3:62897516-62897535 Msa0654640:CDS 40.0%
AAGAACACACTGGAGTAATG+GGG + chr4_3:62897517-62897536 Msa0654640:CDS 40.0%
! AATGGGGCTTTTCTACCTAT+TGG + chr4_3:62897533-62897552 Msa0654640:CDS 40.0%
!! GAATGTCTGAGTTGATGGTA+TGG - chr4_3:62897573-62897592 None:intergenic 40.0%
! GAGTAGAATGTCTGAGTTGA+TGG - chr4_3:62897578-62897597 None:intergenic 40.0%
! TATAACTGGCGTGTCATTGA+TGG + chr4_3:62897660-62897679 Msa0654640:three_prime_UTR 40.0%
TGGAGATAAGTTTCATGGAG+AGG - chr4_3:62895970-62895989 None:intergenic 40.0%
GTCACACACACAAGAAATGA+TGG + chr4_3:62896027-62896046 Msa0654640:CDS 40.0%
ACACAAGAAATGATGGCCAA+TGG + chr4_3:62896034-62896053 Msa0654640:CDS 40.0%
!! CAGAACTTTGAAGCATCCAT+TGG - chr4_3:62896053-62896072 None:intergenic 40.0%
ATTGTGAAAGTGAGGAACAG+TGG + chr4_3:62896075-62896094 Msa0654640:CDS 40.0%
CTTGGACAATACTTTGGCAT+TGG + chr4_3:62896117-62896136 Msa0654640:CDS 40.0%
AGGAACAGCAACAGATATTC+CGG + chr4_3:62896152-62896171 Msa0654640:CDS 40.0%
ACAGATATTCCGGAACCTTT+CGG + chr4_3:62896162-62896181 Msa0654640:CDS 40.0%
ATCTCTATACCGAAAGGTTC+CGG - chr4_3:62896174-62896193 None:intergenic 40.0%
GAACCTTTCGGTATAGAGAT+AGG + chr4_3:62896174-62896193 Msa0654640:CDS 40.0%
! CGAGCTTTATAATGTTACGG+TGG + chr4_3:62896305-62896324 Msa0654640:CDS 40.0%
TTACGGTGGATGAATATGGA+AGG + chr4_3:62896319-62896338 Msa0654640:CDS 40.0%
! TTGTACACAGTGCAAGTTGA+AGG + chr4_3:62896386-62896405 Msa0654640:CDS 40.0%
!! CAAGTTGAAGGAAGGTTTTG+AGG + chr4_3:62896398-62896417 Msa0654640:CDS 40.0%
CTTAGATAGAGGCTTCTCTT+TGG - chr4_3:62896426-62896445 None:intergenic 40.0%
GAACTCTGATCATGATTGCA+AGG + chr4_3:62896551-62896570 Msa0654640:CDS 40.0%
ACAGTCCTAGATTTCAAGCT+CGG - chr4_3:62896686-62896705 None:intergenic 40.0%
CAGACTGTTGGATCAAAGAT+CGG - chr4_3:62896709-62896728 None:intergenic 40.0%
ACAAGTCTCCCATTTCAAAC+TGG + chr4_3:62896942-62896961 Msa0654640:CDS 40.0%
! CATAGCCACCAGTTTGAAAT+GGG - chr4_3:62896953-62896972 None:intergenic 40.0%
ACATAGCCACCAGTTTGAAA+TGG - chr4_3:62896954-62896973 None:intergenic 40.0%
AATTACCTGTCCATATAGGG+TGG - chr4_3:62897018-62897037 None:intergenic 40.0%
AGATGTATATGAGTCGGACA+CGG + chr4_3:62897103-62897122 Msa0654640:intron 40.0%
TTTCATGATTTCAGGATGGG+AGG + chr4_3:62897337-62897356 Msa0654640:intron 40.0%
TTCATGATTTCAGGATGGGA+GGG + chr4_3:62897338-62897357 Msa0654640:intron 40.0%
TGTTCTTCCATACCACGTTA+TGG + chr4_3:62897366-62897385 Msa0654640:CDS 40.0%
TCCATACCACGTTATGGAAA+TGG + chr4_3:62897372-62897391 Msa0654640:CDS 40.0%
TCCATTTCCATAACGTGGTA+TGG - chr4_3:62897376-62897395 None:intergenic 40.0%
TCGTTTCCATTTCCATAACG+TGG - chr4_3:62897381-62897400 None:intergenic 40.0%
TATGGAAATGGAAACGAAGC+AGG + chr4_3:62897384-62897403 Msa0654640:CDS 40.0%
AATGAGACAGGCTACATTGT+AGG + chr4_3:62897408-62897427 Msa0654640:CDS 40.0%
AACAATAGCCAAGAACACAC+TGG + chr4_3:62897507-62897526 Msa0654640:CDS 40.0%
CAAGAACACACTGGAGTAAT+GGG + chr4_3:62897516-62897535 Msa0654640:CDS 40.0%
AAGAACACACTGGAGTAATG+GGG + chr4_3:62897517-62897536 Msa0654640:CDS 40.0%
! AATGGGGCTTTTCTACCTAT+TGG + chr4_3:62897533-62897552 Msa0654640:CDS 40.0%
!! GAATGTCTGAGTTGATGGTA+TGG - chr4_3:62897573-62897592 None:intergenic 40.0%
! GAGTAGAATGTCTGAGTTGA+TGG - chr4_3:62897578-62897597 None:intergenic 40.0%
! TATAACTGGCGTGTCATTGA+TGG + chr4_3:62897660-62897679 Msa0654640:three_prime_UTR 40.0%
! TTGTCCCCGAAATTCGAGTT+AGG + chr4_3:62895835-62895854 Msa0654640:CDS 45.0%
AGGTCCTAACTCGAATTTCG+GGG - chr4_3:62895842-62895861 None:intergenic 45.0%
CAGGTCCTAACTCGAATTTC+GGG - chr4_3:62895843-62895862 None:intergenic 45.0%
CCAGGTCCTAACTCGAATTT+CGG - chr4_3:62895844-62895863 None:intergenic 45.0%
!! GCTGAAGTAGTTGATGAAGC+TGG + chr4_3:62895934-62895953 Msa0654640:CDS 45.0%
ATCTTGCAACACCCCAATGA+TGG - chr4_3:62895990-62896009 None:intergenic 45.0%
AGGAACAGTGGCATATGTCA+GGG + chr4_3:62896087-62896106 Msa0654640:CDS 45.0%
! TGTTGCTGTTCCTCGTGTTT+CGG - chr4_3:62896145-62896164 None:intergenic 45.0%
AGAGATAGGTAATCCTGCAG+AGG + chr4_3:62896188-62896207 Msa0654640:CDS 45.0%
AATCCTGCAGAGGTTTCAGA+AGG + chr4_3:62896198-62896217 Msa0654640:CDS 45.0%
ATCCTGCAGAGGTTTCAGAA+GGG + chr4_3:62896199-62896218 Msa0654640:CDS 45.0%
AGAAGGGTCCGAGGATAAAT+GGG + chr4_3:62896215-62896234 Msa0654640:CDS 45.0%
GTTCATGCCATTGATACACG+TGG + chr4_3:62896246-62896265 Msa0654640:CDS 45.0%
GGCCAGATTATAAAGGAGGT+TGG + chr4_3:62896349-62896368 Msa0654640:CDS 45.0%
! ACACAGTGCAAGTTGAAGGA+AGG + chr4_3:62896390-62896409 Msa0654640:CDS 45.0%
GGGTATCATAATGAGCGACA+TGG + chr4_3:62896835-62896854 Msa0654640:intron 45.0%
ATCTTGCAGCACAAACCACA+AGG + chr4_3:62896890-62896909 Msa0654640:CDS 45.0%
ACAAACCACAAGGAGCGAAA+TGG + chr4_3:62896900-62896919 Msa0654640:CDS 45.0%
AGTCTCCCATTTCAAACTGG+TGG + chr4_3:62896945-62896964 Msa0654640:CDS 45.0%
ACTGGTGGCTATGTGATCTA+TGG + chr4_3:62896960-62896979 Msa0654640:CDS 45.0%
CATCAGCATTCAGGTGGAAT+TGG + chr4_3:62896990-62897009 Msa0654640:CDS 45.0%
GGAATTGGATCCACCCTATA+TGG + chr4_3:62897005-62897024 Msa0654640:CDS 45.0%
AACGAAGCAGGAAATGAGAC+AGG + chr4_3:62897396-62897415 Msa0654640:CDS 45.0%
! TCAATTATCGTGACGGAACC+TGG - chr4_3:62897456-62897475 None:intergenic 45.0%
GGTTCCGTCACGATAATTGA+TGG + chr4_3:62897456-62897475 Msa0654640:CDS 45.0%
CCATTACTCCAGTGTGTTCT+TGG - chr4_3:62897518-62897537 None:intergenic 45.0%
CCAAGAACACACTGGAGTAA+TGG + chr4_3:62897515-62897534 Msa0654640:CDS 45.0%
TCCTCGTTGTAAATGGTGCA+AGG + chr4_3:62897755-62897774 Msa0654640:three_prime_UTR 45.0%
ACCTTGCACCATTTACAACG+AGG - chr4_3:62897759-62897778 None:intergenic 45.0%
!! TGGGAAAGGATTTGTTGTGC+AGG + chr4_3:62897808-62897827 Msa0654640:three_prime_UTR 45.0%
!! GGGAAAGGATTTGTTGTGCA+GGG + chr4_3:62897809-62897828 Msa0654640:three_prime_UTR 45.0%
GATTGGAGAATGGCACAGTT+TGG + chr4_3:62897881-62897900 Msa0654640:three_prime_UTR 45.0%
! TTGTCCCCGAAATTCGAGTT+AGG + chr4_3:62895835-62895854 Msa0654640:CDS 45.0%
AGGTCCTAACTCGAATTTCG+GGG - chr4_3:62895842-62895861 None:intergenic 45.0%
CAGGTCCTAACTCGAATTTC+GGG - chr4_3:62895843-62895862 None:intergenic 45.0%
CCAGGTCCTAACTCGAATTT+CGG - chr4_3:62895844-62895863 None:intergenic 45.0%
!! GCTGAAGTAGTTGATGAAGC+TGG + chr4_3:62895934-62895953 Msa0654640:CDS 45.0%
ATCTTGCAACACCCCAATGA+TGG - chr4_3:62895990-62896009 None:intergenic 45.0%
AGGAACAGTGGCATATGTCA+GGG + chr4_3:62896087-62896106 Msa0654640:CDS 45.0%
! TGTTGCTGTTCCTCGTGTTT+CGG - chr4_3:62896145-62896164 None:intergenic 45.0%
AGAGATAGGTAATCCTGCAG+AGG + chr4_3:62896188-62896207 Msa0654640:CDS 45.0%
AATCCTGCAGAGGTTTCAGA+AGG + chr4_3:62896198-62896217 Msa0654640:CDS 45.0%
ATCCTGCAGAGGTTTCAGAA+GGG + chr4_3:62896199-62896218 Msa0654640:CDS 45.0%
AGAAGGGTCCGAGGATAAAT+GGG + chr4_3:62896215-62896234 Msa0654640:CDS 45.0%
GTTCATGCCATTGATACACG+TGG + chr4_3:62896246-62896265 Msa0654640:CDS 45.0%
GGCCAGATTATAAAGGAGGT+TGG + chr4_3:62896349-62896368 Msa0654640:CDS 45.0%
! ACACAGTGCAAGTTGAAGGA+AGG + chr4_3:62896390-62896409 Msa0654640:CDS 45.0%
GGGTATCATAATGAGCGACA+TGG + chr4_3:62896835-62896854 Msa0654640:intron 45.0%
ATCTTGCAGCACAAACCACA+AGG + chr4_3:62896890-62896909 Msa0654640:CDS 45.0%
ACAAACCACAAGGAGCGAAA+TGG + chr4_3:62896900-62896919 Msa0654640:CDS 45.0%
AGTCTCCCATTTCAAACTGG+TGG + chr4_3:62896945-62896964 Msa0654640:CDS 45.0%
ACTGGTGGCTATGTGATCTA+TGG + chr4_3:62896960-62896979 Msa0654640:CDS 45.0%
CATCAGCATTCAGGTGGAAT+TGG + chr4_3:62896990-62897009 Msa0654640:CDS 45.0%
GGAATTGGATCCACCCTATA+TGG + chr4_3:62897005-62897024 Msa0654640:CDS 45.0%
AACGAAGCAGGAAATGAGAC+AGG + chr4_3:62897396-62897415 Msa0654640:CDS 45.0%
! TCAATTATCGTGACGGAACC+TGG - chr4_3:62897456-62897475 None:intergenic 45.0%
GGTTCCGTCACGATAATTGA+TGG + chr4_3:62897456-62897475 Msa0654640:CDS 45.0%
CCATTACTCCAGTGTGTTCT+TGG - chr4_3:62897518-62897537 None:intergenic 45.0%
CCAAGAACACACTGGAGTAA+TGG + chr4_3:62897515-62897534 Msa0654640:CDS 45.0%
TCCTCGTTGTAAATGGTGCA+AGG + chr4_3:62897755-62897774 Msa0654640:three_prime_UTR 45.0%
ACCTTGCACCATTTACAACG+AGG - chr4_3:62897759-62897778 None:intergenic 45.0%
!! TGGGAAAGGATTTGTTGTGC+AGG + chr4_3:62897808-62897827 Msa0654640:three_prime_UTR 45.0%
!! GGGAAAGGATTTGTTGTGCA+GGG + chr4_3:62897809-62897828 Msa0654640:three_prime_UTR 45.0%
GATTGGAGAATGGCACAGTT+TGG + chr4_3:62897881-62897900 Msa0654640:three_prime_UTR 45.0%
! CCGAAATTCGAGTTAGGACC+TGG + chr4_3:62895841-62895860 Msa0654640:CDS 50.0%
GAGGAACAGTGGCATATGTC+AGG + chr4_3:62896086-62896105 Msa0654640:CDS 50.0%
CAGAAGGGTCCGAGGATAAA+TGG + chr4_3:62896214-62896233 Msa0654640:CDS 50.0%
GTGGCGTGGAGGATAAGTTA+GGG + chr4_3:62896265-62896284 Msa0654640:CDS 50.0%
ACGCAATCAGCACAGACTGT+TGG - chr4_3:62896721-62896740 None:intergenic 50.0%
TGTAGAGTCTCTCGACTGCT+AGG + chr4_3:62896744-62896763 Msa0654640:intron 50.0%
! GGTGTTGCACATCAGCATTC+AGG + chr4_3:62896981-62897000 Msa0654640:CDS 50.0%
GTTGCACATCAGCATTCAGG+TGG + chr4_3:62896984-62897003 Msa0654640:CDS 50.0%
TGGATCCACCCTATATGGAC+AGG + chr4_3:62897010-62897029 Msa0654640:CDS 50.0%
! ATCGTGACGGAACCTGGTTT+AGG - chr4_3:62897450-62897469 None:intergenic 50.0%
! GTTGCTGTTCTGCGACCAAT+AGG - chr4_3:62897551-62897570 None:intergenic 50.0%
TCAGTGTGGCTGCAAGTGTT+TGG + chr4_3:62897788-62897807 Msa0654640:three_prime_UTR 50.0%
CAGTGTGGCTGCAAGTGTTT+GGG + chr4_3:62897789-62897808 Msa0654640:three_prime_UTR 50.0%
TGGCTGCAAGTGTTTGGGAA+AGG + chr4_3:62897794-62897813 Msa0654640:three_prime_UTR 50.0%
! CCGAAATTCGAGTTAGGACC+TGG + chr4_3:62895841-62895860 Msa0654640:CDS 50.0%
GAGGAACAGTGGCATATGTC+AGG + chr4_3:62896086-62896105 Msa0654640:CDS 50.0%
CAGAAGGGTCCGAGGATAAA+TGG + chr4_3:62896214-62896233 Msa0654640:CDS 50.0%
GTGGCGTGGAGGATAAGTTA+GGG + chr4_3:62896265-62896284 Msa0654640:CDS 50.0%
ACGCAATCAGCACAGACTGT+TGG - chr4_3:62896721-62896740 None:intergenic 50.0%
TGTAGAGTCTCTCGACTGCT+AGG + chr4_3:62896744-62896763 Msa0654640:intron 50.0%
! GGTGTTGCACATCAGCATTC+AGG + chr4_3:62896981-62897000 Msa0654640:CDS 50.0%
GTTGCACATCAGCATTCAGG+TGG + chr4_3:62896984-62897003 Msa0654640:CDS 50.0%
TGGATCCACCCTATATGGAC+AGG + chr4_3:62897010-62897029 Msa0654640:CDS 50.0%
! ATCGTGACGGAACCTGGTTT+AGG - chr4_3:62897450-62897469 None:intergenic 50.0%
! GTTGCTGTTCTGCGACCAAT+AGG - chr4_3:62897551-62897570 None:intergenic 50.0%
TCAGTGTGGCTGCAAGTGTT+TGG + chr4_3:62897788-62897807 Msa0654640:three_prime_UTR 50.0%
CAGTGTGGCTGCAAGTGTTT+GGG + chr4_3:62897789-62897808 Msa0654640:three_prime_UTR 50.0%
TGGCTGCAAGTGTTTGGGAA+AGG + chr4_3:62897794-62897813 Msa0654640:three_prime_UTR 50.0%
! GGCATTGGATCCGAAACACG+AGG + chr4_3:62896132-62896151 Msa0654640:CDS 55.0%
!! GACCCTTCTGAAACCTCTGC+AGG - chr4_3:62896204-62896223 None:intergenic 55.0%
AGAGGTTTCAGAAGGGTCCG+AGG + chr4_3:62896206-62896225 Msa0654640:CDS 55.0%
TGCCATTGATACACGTGGCG+TGG + chr4_3:62896251-62896270 Msa0654640:CDS 55.0%
CTCCACGCCACGTGTATCAA+TGG - chr4_3:62896256-62896275 None:intergenic 55.0%
CATTGATACACGTGGCGTGG+AGG + chr4_3:62896254-62896273 Msa0654640:CDS 55.0%
CGTGGCGTGGAGGATAAGTT+AGG + chr4_3:62896264-62896283 Msa0654640:CDS 55.0%
CACAGCCATTTCGCTCCTTG+TGG - chr4_3:62896908-62896927 None:intergenic 55.0%
! GGCATTGGATCCGAAACACG+AGG + chr4_3:62896132-62896151 Msa0654640:CDS 55.0%
!! GACCCTTCTGAAACCTCTGC+AGG - chr4_3:62896204-62896223 None:intergenic 55.0%
AGAGGTTTCAGAAGGGTCCG+AGG + chr4_3:62896206-62896225 Msa0654640:CDS 55.0%
TGCCATTGATACACGTGGCG+TGG + chr4_3:62896251-62896270 Msa0654640:CDS 55.0%
CTCCACGCCACGTGTATCAA+TGG - chr4_3:62896256-62896275 None:intergenic 55.0%
CATTGATACACGTGGCGTGG+AGG + chr4_3:62896254-62896273 Msa0654640:CDS 55.0%
CGTGGCGTGGAGGATAAGTT+AGG + chr4_3:62896264-62896283 Msa0654640:CDS 55.0%
CACAGCCATTTCGCTCCTTG+TGG - chr4_3:62896908-62896927 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 62895526 62897937 62895526 ID=Msa0654640;Name=Msa0654640
chr4_3 mRNA 62895526 62897937 62895526 ID=Msa0654640-mRNA-1;Parent=Msa0654640;Name=Msa0654640-mRNA-1;_AED=0.30;_eAED=0.30;_QI=195|1|1|1|1|1|3|293|434
chr4_3 exon 62895526 62896572 62895526 ID=Msa0654640-mRNA-1:exon:17613;Parent=Msa0654640-mRNA-1
chr4_3 exon 62896873 62897031 62896873 ID=Msa0654640-mRNA-1:exon:17614;Parent=Msa0654640-mRNA-1
chr4_3 exon 62897351 62897937 62897351 ID=Msa0654640-mRNA-1:exon:17615;Parent=Msa0654640-mRNA-1
chr4_3 five_prime_UTR 62895526 62895720 62895526 ID=Msa0654640-mRNA-1:five_prime_utr;Parent=Msa0654640-mRNA-1
chr4_3 CDS 62895721 62896572 62895721 ID=Msa0654640-mRNA-1:cds;Parent=Msa0654640-mRNA-1
chr4_3 CDS 62896873 62897031 62896873 ID=Msa0654640-mRNA-1:cds;Parent=Msa0654640-mRNA-1
chr4_3 CDS 62897351 62897644 62897351 ID=Msa0654640-mRNA-1:cds;Parent=Msa0654640-mRNA-1
chr4_3 three_prime_UTR 62897645 62897937 62897645 ID=Msa0654640-mRNA-1:three_prime_utr;Parent=Msa0654640-mRNA-1
Gene Sequence

>Msa0654640

ATGTCGTTTGTACCTAAGTTTGTATTTTCAGTGGCAATACTTCTGCTATTGTTTGGCACACCATGCTTAAGTTCTTTTTTGAATGCTGAAAATAAAATAAAATCAGCTGTATTTTTGTCCCCGAAATTCGAGTTAGGACCTGGATCAGTTATCAATAAAGAATATTATGATATTGATTTTCCAAGAGATCATATTGCACTCAAGAGTTTCAATGCTGAAGTAGTTGATGAAGCTGGTAATCCTATACCTCTCCATGAAACTTATCTCCATCATTGGGGTGTTGCAAGATATCATCAAAGTAAACATGTCACACACACAAGAAATGATGGCCAATGGATGCTTCAAAGTTCTGATATTGTGAAAGTGAGGAACAGTGGCATATGTCAGGGAAATACTCTTGGACAATACTTTGGCATTGGATCCGAAACACGAGGAACAGCAACAGATATTCCGGAACCTTTCGGTATAGAGATAGGTAATCCTGCAGAGGTTTCAGAAGGGTCCGAGGATAAATGGGTGCTTAATGTTCATGCCATTGATACACGTGGCGTGGAGGATAAGTTAGGGTGCACTGAGTGTAAGTGCGAGCTTTATAATGTTACGGTGGATGAATATGGAAGGTCTATAAGGCCAGATTATAAAGGAGGTTGGTTATGTTGTTATGATTGTACACAGTGCAAGTTGAAGGAAGGTTTTGAGGGACCAAAGAGAAGCCTCTATCTAAGATACACAGTAAAATGGGTTGATTGGGATGATTTTATAGTGCCTGTTAAGATATATATAATTGATGTTACCAATACTTTGAAACTATCAGATAACTCAAAAGGAACGAACTCTGATCATGATTGCAAGATTGAGTATCAAGTTGAATCTTGCAGCACAAACCACAAGGAGCGAAATGGCTGTGTTAATGTAAAGAGGACAAGTCTCCCATTTCAAACTGGTGGCTATGTGATCTATGGTGTTGCACATCAGCATTCAGGTGGAATTGGATCCACCCTATATGGACAGGATGGGAGGGTTATATGTTCTTCCATACCACGTTATGGAAATGGAAACGAAGCAGGAAATGAGACAGGCTACATTGTAGGAATGTCAACTTGTTATCCTAAACCAGGTTCCGTCACGATAATTGATGGTGAAACTTTAACTGTAGAGTCTATCTACAACAATAGCCAAGAACACACTGGAGTAATGGGGCTTTTCTACCTATTGGTCGCAGAACAGCAACCATACCATCAACTCAGACATTCTACTCGTTCTTCATTTTTTGTGGATATAAATAGTATACTTTTAGATAATTAG
Protein sequence

>Msa0654640

MSFVPKFVFSVAILLLLFGTPCLSSFLNAENKIKSAVFLSPKFELGPGSVINKEYYDIDFPRDHIALKSFNAEVVDEAGNPIPLHETYLHHWGVARYHQSKHVTHTRNDGQWMLQSSDIVKVRNSGICQGNTLGQYFGIGSETRGTATDIPEPFGIEIGNPAEVSEGSEDKWVLNVHAIDTRGVEDKLGCTECKCELYNVTVDEYGRSIRPDYKGGWLCCYDCTQCKLKEGFEGPKRSLYLRYTVKWVDWDDFIVPVKIYIIDVTNTLKLSDNSKGTNSDHDCKIEYQVESCSTNHKERNGCVNVKRTSLPFQTGGYVIYGVAHQHSGGIGSTLYGQDGRVICSSIPRYGNGNEAGNETGYIVGMSTCYPKPGSVTIIDGETLTVESIYNNSQEHTGVMGLFYLLVAEQQPYHQLRHSTRSSFFVDINSILLDN*