AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1157670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1157670 MtrunA17_Chr7g0252031 98.671 301 3 1 1 300 1 301 0.0 601
Msa1157670 MtrunA17_Chr7g0268591 56.884 276 118 1 23 298 22 296 3.53e-112 326
Msa1157670 MtrunA17_Chr7g0244061 49.632 272 124 4 32 290 27 298 1.10e-83 254
Msa1157670 MtrunA17_Chr4g0025971 49.259 270 122 5 32 298 12 269 5.39e-77 236
Msa1157670 MtrunA17_Chr4g0026001 51.562 256 114 3 32 286 12 258 1.06e-76 235
Msa1157670 MtrunA17_Chr7g0266981 50.570 263 122 5 32 293 11 266 1.84e-72 224
Msa1157670 MtrunA17_Chr4g0044111 50.570 263 122 5 32 293 11 266 2.17e-72 224
Msa1157670 MtrunA17_Chr7g0270451 47.761 268 131 4 32 297 4 264 6.61e-71 220
Msa1157670 MtrunA17_Chr4g0025981 49.425 261 119 6 35 293 42 291 2.29e-70 221
Msa1157670 MtrunA17_Chr4g0044131 44.318 264 140 3 31 293 5 262 1.23e-69 217
Msa1157670 MtrunA17_Chr7g0266891 49.808 261 123 5 34 293 7 260 5.98e-69 215
Msa1157670 MtrunA17_Chr4g0040371 46.324 272 135 7 32 296 17 284 1.60e-68 214
Msa1157670 MtrunA17_Chr7g0270441 45.977 261 133 4 32 290 4 258 2.25e-68 213
Msa1157670 MtrunA17_Chr2g0324021 44.737 266 137 6 32 295 4 261 7.76e-68 212
Msa1157670 MtrunA17_Chr3g0084871 46.591 264 125 4 32 286 14 270 1.36e-65 207
Msa1157670 MtrunA17_Chr6g0459261 42.188 256 139 5 33 285 24 273 1.78e-60 194
Msa1157670 MtrunA17_Chr6g0459301 41.406 256 141 5 33 285 13 262 3.23e-60 192
Msa1157670 MtrunA17_Chr7g0267001 39.773 264 134 3 31 293 5 244 6.96e-58 186
Msa1157670 MtrunA17_Chr6g0459281 40.530 264 144 6 27 285 6 261 8.98e-57 184
Msa1157670 MtrunA17_Chr6g0459351 40.698 258 140 6 33 285 12 261 2.14e-56 183
Msa1157670 MtrunA17_Chr6g0459331 40.385 260 144 6 33 288 12 264 2.67e-54 177
Msa1157670 MtrunA17_Chr7g0267011 49.474 190 94 2 31 219 5 193 7.83e-54 174
Msa1157670 MtrunA17_Chr6g0459271 39.844 256 145 5 33 285 12 261 7.30e-53 174
Msa1157670 MtrunA17_Chr7g0266991 44.255 235 109 5 32 266 23 235 1.46e-45 154
Msa1157670 MtrunA17_Chr3g0142651 54.135 133 60 1 114 246 1 132 9.15e-44 146
Msa1157670 MtrunA17_Chr6g0463951 47.191 178 86 4 114 290 1 171 3.39e-41 140
Msa1157670 MtrunA17_Chr4g0044121 47.222 180 88 4 114 293 1 173 1.74e-38 134
Msa1157670 MtrunA17_Chr7g0270471 46.053 152 76 3 141 291 1 147 2.07e-34 122
Msa1157670 MtrunA17_Chr7g0270461 50.980 102 49 1 23 123 35 136 3.35e-26 100
Msa1157670 MtrunA17_Chr3g0122901 30.502 259 162 6 32 285 73 318 4.43e-26 105
Msa1157670 MtrunA17_Chr4g0075531 30.385 260 163 9 32 287 5 250 1.25e-23 97.1
Msa1157670 MtrunA17_Chr3g0112151 29.225 284 180 9 7 286 65 331 6.49e-23 96.7
Msa1157670 MtrunA17_Chr3g0112171 30.739 257 163 7 34 286 15 260 8.25e-22 92.4
Msa1157670 MtrunA17_Chr3g0112141 30.233 258 165 7 34 287 17 263 1.06e-21 92.4
Msa1157670 MtrunA17_Chr3g0112261 30.943 265 162 8 30 286 13 264 1.06e-20 89.7
Msa1157670 MtrunA17_Chr7g0259531 29.963 267 154 10 34 285 11 259 1.82e-20 88.6
Msa1157670 MtrunA17_Chr7g0259521 28.839 267 169 8 34 291 6 260 2.06e-20 88.6
Msa1157670 MtrunA17_Chr4g0028911 29.389 262 167 7 34 286 11 263 3.27e-20 88.2
Msa1157670 MtrunA17_Chr1g0191751 29.278 263 162 7 33 284 100 349 1.04e-19 88.2
Msa1157670 MtrunA17_Chr4g0074511 29.699 266 158 11 33 284 39 289 1.55e-19 86.7
Msa1157670 MtrunA17_Chr4g0028921 29.008 262 168 7 34 286 11 263 4.44e-19 85.1
Msa1157670 MtrunA17_Chr7g0272961 28.897 263 163 7 33 284 39 288 5.57e-19 85.1
Msa1157670 MtrunA17_Chr1g0171831 27.308 260 166 7 32 277 12 262 2.48e-18 82.8
Msa1157670 MtrunA17_Chr7g0239511 30.739 257 167 6 34 286 16 265 3.71e-17 79.7
Msa1157670 MtrunA17_Chr4g0054341 30.366 191 125 3 35 222 3 188 7.57e-17 79.0
Msa1157670 MtrunA17_Chr1g0182511 28.626 262 165 8 34 285 14 263 1.39e-16 77.8
Msa1157670 MtrunA17_Chr3g0112271 28.016 257 170 8 34 286 17 262 1.95e-15 74.7
Msa1157670 MtrunA17_Chr7g0239491 28.897 263 165 8 34 287 15 264 2.07e-15 74.7
Msa1157670 MtrunA17_Chr7g0239481 29.297 256 170 5 34 285 15 263 3.23e-15 73.9
Msa1157670 MtrunA17_Chr8g0357481 29.740 269 155 11 34 285 14 265 1.76e-14 72.4
Msa1157670 MtrunA17_Chr7g0239501 27.413 259 173 6 34 286 16 265 2.71e-14 71.6
Msa1157670 MtrunA17_Chr7g0239451 28.295 258 174 7 34 287 16 266 6.21e-13 67.4
Msa1157670 MtrunA17_Chr4g0033091 31.193 218 120 8 31 226 21 230 1.79e-12 66.2
Msa1157670 MtrunA17_Chr4g0045041 28.409 264 161 9 36 275 6 265 9.34e-12 65.5
Msa1157670 MtrunA17_Chr7g0249571 26.804 194 133 4 34 220 38 229 1.28e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1157670 AT3G26760.1 58.863 299 119 2 1 295 1 299 3.49e-124 357
Msa1157670 AT3G26770.1 59.925 267 107 0 32 298 39 305 3.78e-119 344
Msa1157670 AT4G03140.1 55.224 268 119 1 32 299 76 342 9.40e-103 304
Msa1157670 AT3G51680.1 49.259 270 126 5 32 290 30 299 5.82e-78 239
Msa1157670 AT2G47120.1 46.097 269 130 6 31 297 3 258 9.31e-71 219
Msa1157670 AT2G47120.2 46.067 267 129 6 33 297 6 259 3.31e-70 218
Msa1157670 AT2G47130.1 45.594 261 132 4 31 289 3 255 1.77e-68 214
Msa1157670 AT3G29250.3 42.456 285 155 5 7 289 15 292 3.51e-68 214
Msa1157670 AT2G47140.1 44.828 261 135 5 31 289 3 256 3.71e-68 213
Msa1157670 AT3G29260.1 45.211 261 133 4 31 289 3 255 6.15e-68 213
Msa1157670 AT3G29250.2 44.828 261 135 5 31 289 3 256 3.07e-66 208
Msa1157670 AT3G29250.1 42.160 287 155 6 7 289 15 294 4.06e-66 209
Msa1157670 AT1G52340.1 42.697 267 134 4 32 286 16 275 5.02e-59 191
Msa1157670 AT3G42960.1 47.510 261 128 6 32 287 6 262 5.47e-59 190
Msa1157670 AT2G47150.1 31.128 257 117 7 34 289 1 198 5.72e-26 102
Msa1157670 AT5G18210.1 31.439 264 157 9 34 285 8 259 1.48e-25 102
Msa1157670 AT1G63380.3 30.075 266 161 8 34 286 15 268 3.24e-24 99.8
Msa1157670 AT1G63380.2 30.075 266 161 8 34 286 22 275 3.38e-24 99.8
Msa1157670 AT1G63380.4 30.075 266 161 8 34 286 19 272 3.55e-24 99.8
Msa1157670 AT1G63380.1 30.075 266 161 8 34 286 17 270 3.61e-24 99.4
Msa1157670 AT1G62610.1 29.434 265 164 7 34 286 14 267 5.25e-23 96.3
Msa1157670 AT1G62610.3 29.434 265 164 7 34 286 15 268 5.39e-23 96.3
Msa1157670 AT1G62610.4 29.434 265 164 7 34 286 19 272 5.61e-23 96.3
Msa1157670 AT1G62610.2 29.434 265 164 7 34 286 13 266 5.83e-23 96.3
Msa1157670 AT2G17845.1 29.658 263 164 6 34 284 47 300 5.88e-23 96.7
Msa1157670 AT1G24360.1 29.352 293 182 10 1 285 42 317 3.26e-22 94.7
Msa1157670 AT3G55290.1 30.534 262 164 6 34 286 18 270 6.01e-22 93.6
Msa1157670 AT4G13180.1 30.268 261 161 9 34 285 13 261 6.40e-22 93.2
Msa1157670 AT3G55290.2 30.534 262 164 6 34 286 17 269 7.54e-22 93.2
Msa1157670 AT2G29150.1 31.818 264 163 11 34 293 16 266 1.04e-21 92.4
Msa1157670 AT5G18210.2 31.452 248 146 9 34 269 8 243 5.98e-21 90.5
Msa1157670 AT3G03980.1 29.851 268 160 8 34 285 14 269 6.72e-21 90.5
Msa1157670 AT2G29340.2 28.788 264 172 7 34 293 7 258 9.64e-21 89.7
Msa1157670 AT2G29340.1 28.788 264 172 7 34 293 7 258 2.07e-20 89.7
Msa1157670 AT2G29370.1 28.302 265 174 8 34 294 16 268 3.77e-20 88.2
Msa1157670 AT5G06060.1 27.341 267 172 9 34 293 9 260 3.13e-19 85.5
Msa1157670 AT3G04000.1 29.478 268 160 8 34 284 14 269 4.75e-19 85.5
Msa1157670 AT4G05530.1 31.439 264 155 10 32 287 7 252 6.01e-19 84.7
Msa1157670 AT2G29300.1 27.652 264 163 8 34 286 7 253 6.61e-19 84.7
Msa1157670 AT2G29360.1 27.985 268 176 9 34 296 16 271 1.04e-18 84.3
Msa1157670 AT2G29300.2 27.652 264 163 8 34 286 7 253 1.35e-18 84.3
Msa1157670 AT2G29310.1 27.237 257 172 6 34 286 7 252 1.46e-18 84.0
Msa1157670 AT1G07450.1 27.820 266 171 10 34 293 8 258 1.72e-18 83.6
Msa1157670 AT3G55310.1 29.588 267 160 8 34 286 17 269 2.15e-18 83.6
Msa1157670 AT3G05260.1 26.515 264 169 6 33 285 36 285 3.20e-18 83.2
Msa1157670 AT1G54870.1 27.757 263 166 7 33 284 81 330 3.60e-18 84.0
Msa1157670 AT1G54870.2 27.757 263 166 7 33 284 83 332 3.93e-18 83.6
Msa1157670 AT3G46170.1 28.897 263 169 6 33 286 25 278 7.24e-18 82.4
Msa1157670 AT2G30670.1 27.652 264 175 8 34 293 7 258 2.12e-17 80.5
Msa1157670 AT2G29320.1 26.966 267 174 8 34 293 13 265 2.52e-17 80.5
Msa1157670 AT2G29340.3 30.412 194 128 4 34 223 7 197 2.54e-17 79.0
Msa1157670 AT2G29340.4 30.412 194 128 4 34 223 7 197 2.54e-17 79.0
Msa1157670 AT2G29290.2 28.302 265 172 10 34 293 7 258 1.10e-16 78.6
Msa1157670 AT1G10310.1 32.178 202 121 6 37 226 18 215 2.12e-16 77.4
Msa1157670 AT2G29330.1 26.692 266 175 7 34 293 7 258 1.14e-15 75.9
Msa1157670 AT1G07440.1 25.758 264 179 7 34 293 12 262 3.30e-15 74.3
Msa1157670 AT2G29260.1 28.996 269 172 10 34 297 68 322 3.91e-15 75.1
Msa1157670 AT2G29350.1 27.068 266 177 8 34 295 15 267 4.74e-15 73.9
Msa1157670 AT2G29310.3 27.320 194 134 3 34 223 7 197 4.49e-14 70.1
Msa1157670 AT2G29320.3 27.692 195 133 4 34 223 13 204 6.94e-14 69.7
Msa1157670 AT2G29350.2 29.208 202 136 5 34 231 15 213 2.86e-13 68.2
Msa1157670 AT3G12800.1 28.364 275 170 10 34 294 10 271 1.41e-12 67.4
Msa1157670 AT3G01980.1 24.324 259 177 6 36 284 5 254 5.40e-12 65.1
Msa1157670 AT3G01980.4 24.324 259 177 6 36 284 5 254 5.40e-12 65.1
Msa1157670 AT2G29310.2 25.417 240 164 6 51 286 22 250 6.97e-12 64.7
Msa1157670 AT1G49670.2 27.848 237 132 8 39 252 9 229 1.01e-11 65.9
Msa1157670 AT2G29290.1 27.309 249 163 10 50 293 6 241 1.05e-11 64.3
Msa1157670 AT1G49670.1 27.848 237 132 8 39 252 9 229 1.07e-11 65.9
Msa1157670 AT5G65205.1 28.293 205 137 4 29 230 1 198 2.20e-11 63.5
Msa1157670 AT3G03330.1 25.888 197 132 4 34 220 41 233 3.36e-11 63.5
Msa1157670 AT5G10050.1 27.000 200 134 5 35 230 6 197 9.75e-11 61.6

Find 109 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCAATTCCTTTGCAACTTT+TGG 0.096535 7_4:-46734662 None:intergenic
GATGGGTTGATGAGTATTTA+AGG 0.193959 7_4:-46731544 None:intergenic
ATCTTTGTATCATTGTATTA+TGG 0.243459 7_4:+46735657 Msa1157670:three_prime_UTR
GTTATGCTTGGTGGGATTAT+TGG 0.256279 7_4:-46734809 None:intergenic
AGAAGAGTGTTGACCTTTGA+TGG 0.268825 7_4:-46731600 None:intergenic
CCAATGTCATTGTATCAAAT+TGG 0.270336 7_4:+46735312 Msa1157670:CDS
AGTGGGCTATTTGGTGGGCT+TGG 0.274352 7_4:+46735171 Msa1157670:CDS
GCCAAAAGTTGCAAAGGAAT+TGG 0.277997 7_4:+46734661 Msa1157670:CDS
CGTTGTCGGCGATGATTACT+TGG 0.280742 7_4:-46734625 None:intergenic
GTGATGATACCAAAGGGATA+TGG 0.297661 7_4:+46735123 Msa1157670:CDS
GTGGGCTATTTGGTGGGCTT+GGG 0.302403 7_4:+46735172 Msa1157670:CDS
TCAAGCATAAGTGGGCTATT+TGG 0.324040 7_4:+46735162 Msa1157670:CDS
AGTTCACTGCTTCTTCTACT+TGG 0.342962 7_4:-46734727 None:intergenic
TATGCTTGATGTACATATAA+TGG 0.345255 7_4:-46735148 None:intergenic
CAAATTGGAAAGTTTATTCC+TGG 0.346532 7_4:+46735327 Msa1157670:CDS
TACAACAATGCTGGCATAAC+AGG 0.355905 7_4:+46734785 Msa1157670:CDS
AACTTTGCCATAACAAACTA+TGG 0.360430 7_4:+46734746 Msa1157670:CDS
AAATTTCGCGTTTCCTTCTC+CGG 0.363396 7_4:+46735518 Msa1157670:CDS
TAATTGAAGACAAGTATCTT+TGG 0.369403 7_4:+46735603 Msa1157670:three_prime_UTR
AATTTCCCCTATCTGTTCAT+AGG 0.378823 7_4:-46735355 None:intergenic
TAGTTTACCATAGTTTGTTA+TGG 0.381695 7_4:-46734753 None:intergenic
CCCACCAAGCATAACAGAAT+TGG 0.384770 7_4:+46734817 Msa1157670:CDS
GTCATGAGAATCAATGTAAC+AGG 0.385275 7_4:+46734860 Msa1157670:CDS
CCCCATGTTGGACAAATTCA+TGG 0.396340 7_4:-46734601 None:intergenic
GTTCACTGCTTCTTCTACTT+GGG 0.400670 7_4:-46734726 None:intergenic
AACATCAATGTCCTCACATT+TGG 0.400849 7_4:-46735406 None:intergenic
CCAAAAGTTGCAAAGGAATT+GGG 0.408007 7_4:+46734662 Msa1157670:CDS
CACCAACTTCAGCAATGGTT+TGG 0.409202 7_4:+46731846 Msa1157670:CDS
GTGATCAAGATCTGATTGTA+AGG 0.414105 7_4:-46731629 None:intergenic
ACCTTTGATGGATCTAGCTC+TGG 0.424045 7_4:-46731588 None:intergenic
TGCTAGAGCTGCATTGTACT+TGG 0.426496 7_4:+46735428 Msa1157670:CDS
GCCGACAACGACACTAAACT+TGG 0.431149 7_4:+46734638 Msa1157670:CDS
TCCAATTCTGTTATGCTTGG+TGG 0.440019 7_4:-46734818 None:intergenic
GGTCAGAATCTCATAGTTGA+TGG 0.441728 7_4:+46735477 Msa1157670:CDS
TAGGGTTTAAATTGCGATCT+CGG 0.442430 7_4:+46735556 Msa1157670:three_prime_UTR
CCCAAGTTTAGTGTCGTTGT+CGG 0.443828 7_4:-46734639 None:intergenic
ACTGGATCAGCAAGTGGACT+TGG 0.446502 7_4:+46734566 Msa1157670:CDS
CCAATTCTGTTATGCTTGGT+GGG 0.447299 7_4:-46734817 None:intergenic
AACCAAACCATTGCTGAAGT+TGG 0.452789 7_4:-46731848 None:intergenic
GTAGACTTCGATATTGTGTA+AGG 0.457400 7_4:-46735201 None:intergenic
CCGGATCAAATCGGTTAGCT+AGG 0.459950 7_4:+46735537 Msa1157670:exon
ACACGAAATTATTCTCTTAG+TGG 0.462248 7_4:-46731477 None:intergenic
ATTTGAAAGAAAAGAAATGA+TGG 0.466642 7_4:-46731562 None:intergenic
TTTCCTTCTCCGGATCAAAT+CGG 0.468245 7_4:+46735528 Msa1157670:CDS
GCTAGTGAACTATGTGGAGC+TGG 0.476731 7_4:+46735249 Msa1157670:CDS
AATGTAACAGGAGTTATTGC+AGG 0.478783 7_4:+46734872 Msa1157670:CDS
TGATGATACCAAAGGGATAT+GGG 0.491753 7_4:+46735124 Msa1157670:CDS
GATGATGCTAAGTTTATCTC+AGG 0.492118 7_4:+46735456 Msa1157670:CDS
CACGAAATTATTCTCTTAGT+GGG 0.497747 7_4:-46731476 None:intergenic
AGCATAAGTGGGCTATTTGG+TGG 0.499085 7_4:+46735165 Msa1157670:CDS
GCCCATGAATTTGTCCAACA+TGG 0.508068 7_4:+46734599 Msa1157670:CDS
GTGTGACCTATGAACAGATA+GGG 0.509095 7_4:+46735349 Msa1157670:CDS
CCAATTTGATACAATGACAT+TGG 0.512550 7_4:-46735312 None:intergenic
TGATTACTTGGGCCCCATGT+TGG 0.514016 7_4:-46734613 None:intergenic
ATATCGAAGTCTACAATACC+TGG 0.516201 7_4:+46735210 Msa1157670:CDS
ATAATGGACCCATATCCCTT+TGG 0.520967 7_4:-46735132 None:intergenic
TTCGATATTGTGTAAGGATG+AGG 0.521215 7_4:-46735195 None:intergenic
ATGCAACAGTTGGTGGAAGA+AGG 0.524744 7_4:+46731890 Msa1157670:CDS
CAGATAGGGGAAATTGTTAG+TGG 0.528334 7_4:+46735363 Msa1157670:CDS
CCTAGCTAACCGATTTGATC+CGG 0.532831 7_4:-46735537 None:intergenic
GGTGTGACCTATGAACAGAT+AGG 0.533977 7_4:+46735348 Msa1157670:CDS
CCCATGAATTTGTCCAACAT+GGG 0.534289 7_4:+46734600 Msa1157670:CDS
ATATGTACATCAAGCATAAG+TGG 0.539440 7_4:+46735153 Msa1157670:CDS
TGATACAATGACATTGGTGT+AGG 0.540244 7_4:-46735306 None:intergenic
AGATTCTATGCAACAGTTGG+TGG 0.542590 7_4:+46731883 Msa1157670:CDS
TCATGCTCAGAACACTAGCC+AGG 0.543355 7_4:+46731660 Msa1157670:exon
ATTCCACATACTGTGCTGAA+TGG 0.544450 7_4:-46734685 None:intergenic
CGGATCAAATCGGTTAGCTA+GGG 0.545809 7_4:+46735538 Msa1157670:exon
TTTGAAAGAAAAGAAATGAT+GGG 0.547929 7_4:-46731561 None:intergenic
GACATCATGTACAACAATGC+TGG 0.549387 7_4:+46734776 Msa1157670:CDS
AGGTCCAATTCTGTTATGCT+TGG 0.553618 7_4:-46734821 None:intergenic
AAGCTCACCAACTTCAGCAA+TGG 0.557570 7_4:+46731841 Msa1157670:CDS
GCATAAGTGGGCTATTTGGT+GGG 0.558522 7_4:+46735166 Msa1157670:CDS
ATCAGCAAGTGGACTTGGAA+AGG 0.560560 7_4:+46734571 Msa1157670:CDS
GGGCCATTCAGCACAGTATG+TGG 0.564489 7_4:+46734682 Msa1157670:CDS
GCCGCAGATTTCACCACCCC+AGG 0.565265 7_4:-46735228 None:intergenic
TTGTCTCTTACAAATATAGG+AGG 0.567172 7_4:-46731502 None:intergenic
GGACCTTGATGAATTTGAGA+AGG 0.567216 7_4:+46734838 Msa1157670:CDS
AGCAGATTCTATGCAACAGT+TGG 0.569130 7_4:+46731880 Msa1157670:CDS
CCCATGTTGGACAAATTCAT+GGG 0.569913 7_4:-46734600 None:intergenic
TGACCTTCTCAAATTCATCA+AGG 0.579050 7_4:-46734841 None:intergenic
TAACCGATTTGATCCGGAGA+AGG 0.582964 7_4:-46735531 None:intergenic
CTAGTGAACTATGTGGAGCT+GGG 0.585535 7_4:+46735250 Msa1157670:CDS
TATGTACATCAAGCATAAGT+GGG 0.587715 7_4:+46735154 Msa1157670:CDS
GCTCGAGTGATGATACCAAA+GGG 0.593471 7_4:+46735117 Msa1157670:CDS
ATCTGTTCATAGGTCACACC+AGG 0.597148 7_4:-46735345 None:intergenic
CAGAATCTCATAGTTGATGG+AGG 0.597836 7_4:+46735480 Msa1157670:CDS
TATCGAAGTCTACAATACCT+GGG 0.601318 7_4:+46735211 Msa1157670:CDS
ACTTGGGCCAAAAGTTGCAA+AGG 0.606003 7_4:+46734655 Msa1157670:CDS
TGATCAAGATCTGATTGTAA+GGG 0.615673 7_4:-46731628 None:intergenic
GTTGTCGGCGATGATTACTT+GGG 0.621879 7_4:-46734624 None:intergenic
CCATGAATTTGTCCAACATG+GGG 0.626707 7_4:+46734601 Msa1157670:CDS
ACCAGAGCTAGATCCATCAA+AGG 0.636456 7_4:+46731587 Msa1157670:five_prime_UTR
GGCTAGTGTTCTGAGCATGA+TGG 0.637926 7_4:-46731657 None:intergenic
ATCATAACTGGATCAGCAAG+TGG 0.638092 7_4:+46734560 Msa1157670:CDS
GAAGTCTACAATACCTGGGG+TGG 0.639167 7_4:+46735215 Msa1157670:CDS
AGAATCTCATAGTTGATGGA+GGG 0.642750 7_4:+46735481 Msa1157670:CDS
CGTTGCAGGTATAAAACATG+CGG 0.648055 7_4:+46735095 Msa1157670:intron
CAATGATACAAAGATTGTTG+AGG 0.648163 7_4:-46735649 None:intergenic
TCTGCGGCTAGTGAACTATG+TGG 0.653433 7_4:+46735243 Msa1157670:CDS
CCGACAACGACACTAAACTT+GGG 0.660224 7_4:+46734639 Msa1157670:CDS
TGTGACCTATGAACAGATAG+GGG 0.662078 7_4:+46735350 Msa1157670:CDS
TCTCAAAGGTGCCAAATGTG+AGG 0.663215 7_4:+46735395 Msa1157670:CDS
AGTGGACTTAGTGCTCTCAA+AGG 0.666537 7_4:+46735381 Msa1157670:CDS
GGCTCGAGTGATGATACCAA+AGG 0.666702 7_4:+46735116 Msa1157670:CDS
ACCTGGGGTGGTGAAATCTG+CGG 0.676557 7_4:+46735227 Msa1157670:CDS
GGAATGTGATGTCACTGTTG+AGG 0.683235 7_4:+46734703 Msa1157670:CDS
ATCGAAGTCTACAATACCTG+GGG 0.685324 7_4:+46735212 Msa1157670:CDS
ATTGGTGTAGGAATTGCAGT+TGG 0.686643 7_4:-46735294 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATAGAATAATTGTT+TGG - chr7_4:46731728-46731747 None:intergenic 10.0%
!! CTTAAATACAATAAAAAAAT+TGG + chr7_4:46732264-46732283 Msa1157670:intron 10.0%
!! AAAAACATAAGAAAAAATAT+GGG + chr7_4:46734939-46734958 Msa1157670:intron 10.0%
!! AAATTTATTTAACATGAATT+TGG - chr7_4:46734975-46734994 None:intergenic 10.0%
!! AATTAAAAAAGAATGACTAT+TGG - chr7_4:46731697-46731716 None:intergenic 15.0%
!!! TTTAAATCTTTTATATATGC+AGG + chr7_4:46731812-46731831 Msa1157670:intron 15.0%
!!! TTAAATCTTTTATATATGCA+GGG + chr7_4:46731813-46731832 Msa1157670:intron 15.0%
!! TCCAAAAATAAATAAACTAT+AGG + chr7_4:46732077-46732096 Msa1157670:intron 15.0%
!!! TCCTATAGTTTATTTATTTT+TGG - chr7_4:46732081-46732100 None:intergenic 15.0%
!! CAACTGTAAATAAATAAAAA+AGG - chr7_4:46732892-46732911 None:intergenic 15.0%
!!! GTTCTTTTAAACAATTTATT+TGG + chr7_4:46733257-46733276 Msa1157670:intron 15.0%
!! TACGAATGAAAATAAAAAAT+AGG + chr7_4:46733331-46733350 Msa1157670:intron 15.0%
!!! TCATTAGTTTCATTATTTTA+TGG - chr7_4:46733371-46733390 None:intergenic 15.0%
!! AATAAAATTGAATTAAACAG+TGG - chr7_4:46733432-46733451 None:intergenic 15.0%
!! GTTCAATTAAAAAATAAAAG+TGG - chr7_4:46733667-46733686 None:intergenic 15.0%
!! AAATAAATAATGATTGATGA+TGG - chr7_4:46734394-46734413 None:intergenic 15.0%
!!! TTTGTTTTCTATTTTCTTTT+TGG - chr7_4:46734922-46734941 None:intergenic 15.0%
!! CAAAAACATAAGAAAAAATA+TGG + chr7_4:46734938-46734957 Msa1157670:intron 15.0%
!! TTTGAAAGAAAAGAAATGAT+GGG - chr7_4:46731564-46731583 None:intergenic 20.0%
!! ATTTGAAAGAAAAGAAATGA+TGG - chr7_4:46731565-46731584 None:intergenic 20.0%
!! ATAAGTATTCTGTTCTATAT+AGG + chr7_4:46731757-46731776 Msa1157670:intron 20.0%
!! TACTATAATTGCACATAATA+TGG - chr7_4:46731951-46731970 None:intergenic 20.0%
!!! TTTTTTTGAAGAAGCTAAAA+TGG - chr7_4:46732802-46732821 None:intergenic 20.0%
!! CAATGAATCAAAAGTAATAT+AGG + chr7_4:46733036-46733055 Msa1157670:intron 20.0%
!!! ACTTTTGATTCAAACATATT+CGG - chr7_4:46733072-46733091 None:intergenic 20.0%
!! GTTTGAATCAAAAGTAATAT+AGG + chr7_4:46733077-46733096 Msa1157670:intron 20.0%
!!! CTTTTAAACAATTTATTTGG+TGG + chr7_4:46733260-46733279 Msa1157670:intron 20.0%
!! AAATGAAATTGAATTCAAGT+GGG - chr7_4:46733295-46733314 None:intergenic 20.0%
!! TAAATGAAATTGAATTCAAG+TGG - chr7_4:46733296-46733315 None:intergenic 20.0%
!!! ATACTTTAGTTTAGAAACAA+TGG + chr7_4:46733531-46733550 Msa1157670:intron 20.0%
!!! ATTGATTAGTTTAGAAATCT+AGG - chr7_4:46733722-46733741 None:intergenic 20.0%
!!! CACTTTTTTTTTACAATGTT+TGG - chr7_4:46733752-46733771 None:intergenic 20.0%
!! ATTATTATCTTGAAGAGATA+GGG - chr7_4:46733892-46733911 None:intergenic 20.0%
!! AATTATTATCTTGAAGAGAT+AGG - chr7_4:46733893-46733912 None:intergenic 20.0%
!! AATATGCTTACAAAAATGAA+TGG - chr7_4:46733955-46733974 None:intergenic 20.0%
!!! TACTTTAATTTGGAATTATG+AGG - chr7_4:46734041-46734060 None:intergenic 20.0%
!! AGACAAGTTTATATTTGAAA+GGG + chr7_4:46734072-46734091 Msa1157670:intron 20.0%
!!! TTACTTTTCAAAGTCATTTA+AGG + chr7_4:46734229-46734248 Msa1157670:intron 20.0%
!! ATCTTACAAAAAAATCTTGT+TGG + chr7_4:46734260-46734279 Msa1157670:intron 20.0%
!!! CATTCAATTCAATTCATTTT+TGG + chr7_4:46734505-46734524 Msa1157670:intron 20.0%
!! ATCTTTGTATCATTGTATTA+TGG + chr7_4:46735657-46735676 Msa1157670:three_prime_UTR 20.0%
!! GTTTTGTCTCTTACAAATAT+AGG - chr7_4:46731508-46731527 None:intergenic 25.0%
! TCATTAAAGCTCTTTACTAT+GGG + chr7_4:46731922-46731941 Msa1157670:intron 25.0%
! CTAAATGTACACTAAACTAT+AGG + chr7_4:46732044-46732063 Msa1157670:intron 25.0%
! TGTCAATTTAGAAGAAAGTT+GGG - chr7_4:46732149-46732168 None:intergenic 25.0%
! ATGTCAATTTAGAAGAAAGT+TGG - chr7_4:46732150-46732169 None:intergenic 25.0%
!! TATTGTATTTAAGACAAGAG+AGG - chr7_4:46732257-46732276 None:intergenic 25.0%
!! TAAGTATATGTTTTCAACAC+AGG + chr7_4:46732318-46732337 Msa1157670:intron 25.0%
! CTAACAAATTATCTTCACAT+AGG - chr7_4:46732360-46732379 None:intergenic 25.0%
!! TTTTAATAAAACGATGCAGT+AGG + chr7_4:46732406-46732425 Msa1157670:intron 25.0%
! CTATCATAGAAAACAGTAAA+CGG - chr7_4:46732611-46732630 None:intergenic 25.0%
! AAGAACTATAATTACCATGT+CGG - chr7_4:46733243-46733262 None:intergenic 25.0%
! ATATTGTACTATGTATGATC+AGG + chr7_4:46733502-46733521 Msa1157670:intron 25.0%
! AGAATCATTAGTTGAGTTAT+TGG - chr7_4:46733694-46733713 None:intergenic 25.0%
!! AACTCAACTAATGATTCTTT+TGG + chr7_4:46733696-46733715 Msa1157670:intron 25.0%
! AATGATTATGATCCTGAATT+TGG - chr7_4:46733826-46733845 None:intergenic 25.0%
!! TAAGCATTTTTATAAGCATC+TGG + chr7_4:46733982-46734001 Msa1157670:intron 25.0%
! TCAAATATAAACTTGTCTCA+AGG - chr7_4:46734070-46734089 None:intergenic 25.0%
! GAGACAAGTTTATATTTGAA+AGG + chr7_4:46734071-46734090 Msa1157670:intron 25.0%
! GACAAGTTTATATTTGAAAG+GGG + chr7_4:46734073-46734092 Msa1157670:intron 25.0%
!! TCATGGAGTATCAATAAAAA+TGG + chr7_4:46734123-46734142 Msa1157670:intron 25.0%
! TGAAAGTAACACAAATCTAA+AGG + chr7_4:46734189-46734208 Msa1157670:intron 25.0%
!! AAATGACTTTGAAAAGTAAG+AGG - chr7_4:46734228-46734247 None:intergenic 25.0%
! AATCTTGTTGGATAAATCTT+CGG + chr7_4:46734272-46734291 Msa1157670:intron 25.0%
!!! TCATTTCTTTTTCAACAAGT+TGG - chr7_4:46734314-46734333 None:intergenic 25.0%
!!! TAGTTTACCATAGTTTGTTA+TGG - chr7_4:46734756-46734775 None:intergenic 25.0%
! AACATAAGAAAAAATATGGG+AGG + chr7_4:46734942-46734961 Msa1157670:intron 25.0%
!! TTACAACTTTAAGTTAAAGG+TGG - chr7_4:46735002-46735021 None:intergenic 25.0%
!! GGATTACAACTTTAAGTTAA+AGG - chr7_4:46735005-46735024 None:intergenic 25.0%
!! TATGAAATTTTCTCAAGTAG+AGG - chr7_4:46735026-46735045 None:intergenic 25.0%
! CTAAATCACAGATATAACTT+AGG - chr7_4:46735054-46735073 None:intergenic 25.0%
! TATGCTTGATGTACATATAA+TGG - chr7_4:46735151-46735170 None:intergenic 25.0%
! TAATTGAAGACAAGTATCTT+TGG + chr7_4:46735603-46735622 Msa1157670:three_prime_UTR 25.0%
CACGAAATTATTCTCTTAGT+GGG - chr7_4:46731479-46731498 None:intergenic 30.0%
ACACGAAATTATTCTCTTAG+TGG - chr7_4:46731480-46731499 None:intergenic 30.0%
TTGTCTCTTACAAATATAGG+AGG - chr7_4:46731505-46731524 None:intergenic 30.0%
TGATCAAGATCTGATTGTAA+GGG - chr7_4:46731631-46731650 None:intergenic 30.0%
CTCATTAAAGCTCTTTACTA+TGG + chr7_4:46731921-46731940 Msa1157670:intron 30.0%
!!! ATTTTTTTTCCTTGATTCCC+TGG + chr7_4:46732005-46732024 Msa1157670:intron 30.0%
! ACATTTAGAGTAGCATAATC+AGG - chr7_4:46732032-46732051 None:intergenic 30.0%
TCTAAATTGACATGTATGAG+TGG + chr7_4:46732157-46732176 Msa1157670:intron 30.0%
! GTGTCAAAAGTTTTACAATG+TGG - chr7_4:46732195-46732214 None:intergenic 30.0%
AGCATCAAAATCGTTTCTTA+AGG + chr7_4:46732436-46732455 Msa1157670:intron 30.0%
!! TCGTTTCTTAAGGTTGTTTT+CGG + chr7_4:46732446-46732465 Msa1157670:intron 30.0%
! TGTTTTCGGTGATGTTTAAA+CGG + chr7_4:46732460-46732479 Msa1157670:intron 30.0%
TTCTATGATAGTCCTTTGTT+AGG + chr7_4:46732620-46732639 Msa1157670:intron 30.0%
CAACATACAAATGATAGATG+GGG - chr7_4:46732713-46732732 None:intergenic 30.0%
GCAACATACAAATGATAGAT+GGG - chr7_4:46732714-46732733 None:intergenic 30.0%
AGCAACATACAAATGATAGA+TGG - chr7_4:46732715-46732734 None:intergenic 30.0%
TCAGTTCATTTCGGATAATT+TGG - chr7_4:46733131-46733150 None:intergenic 30.0%
TAGTTTAGAAACAATGGCAA+CGG + chr7_4:46733537-46733556 Msa1157670:intron 30.0%
! GTTTATGTTTGCTAAATCCA+TGG - chr7_4:46733624-46733643 None:intergenic 30.0%
AATTTGGCTACACAACAAAA+AGG - chr7_4:46733810-46733829 None:intergenic 30.0%
! TGGACGAAGTATTTAAAGTA+TGG - chr7_4:46733931-46733950 None:intergenic 30.0%
TGCTTACAAAAATGAATGGA+TGG - chr7_4:46733951-46733970 None:intergenic 30.0%
AAGGTCTCACTACTTTAATT+TGG - chr7_4:46734051-46734070 None:intergenic 30.0%
!!! TTTCTTTTTCAACAAGTTGG+AGG - chr7_4:46734311-46734330 None:intergenic 30.0%
GAATGAATGAGAATCATCAT+GGG - chr7_4:46734490-46734509 None:intergenic 30.0%
TGAATGAATGAGAATCATCA+TGG - chr7_4:46734491-46734510 None:intergenic 30.0%
GGAAAAATTGCAATCATAAC+TGG + chr7_4:46734548-46734567 Msa1157670:CDS 30.0%
AACTTTGCCATAACAAACTA+TGG + chr7_4:46734746-46734765 Msa1157670:CDS 30.0%
ATATGTACATCAAGCATAAG+TGG + chr7_4:46735153-46735172 Msa1157670:CDS 30.0%
TATGTACATCAAGCATAAGT+GGG + chr7_4:46735154-46735173 Msa1157670:CDS 30.0%
CCAATTTGATACAATGACAT+TGG - chr7_4:46735315-46735334 None:intergenic 30.0%
CCAATGTCATTGTATCAAAT+TGG + chr7_4:46735312-46735331 Msa1157670:CDS 30.0%
CAAATTGGAAAGTTTATTCC+TGG + chr7_4:46735327-46735346 Msa1157670:CDS 30.0%
! AGGAAACGCGAAATTTTTAA+TGG - chr7_4:46735514-46735533 None:intergenic 30.0%
CAATGATACAAAGATTGTTG+AGG - chr7_4:46735652-46735671 None:intergenic 30.0%
!! GATGGGTTGATGAGTATTTA+AGG - chr7_4:46731547-46731566 None:intergenic 35.0%
GTGATCAAGATCTGATTGTA+AGG - chr7_4:46731632-46731651 None:intergenic 35.0%
CTATTGGAGTATATTGAACC+TGG - chr7_4:46731681-46731700 None:intergenic 35.0%
ATGTTTAAACGGTGGCAAAA+TGG + chr7_4:46732471-46732490 Msa1157670:intron 35.0%
TGTTTAAACGGTGGCAAAAT+GGG + chr7_4:46732472-46732491 Msa1157670:intron 35.0%
TTCAGATTGTCTTAGATGCA+CGG + chr7_4:46732662-46732681 Msa1157670:intron 35.0%
!!! TGTTGCTATTTTACGACTTC+TGG + chr7_4:46732728-46732747 Msa1157670:intron 35.0%
AGAGACACGTACACTTAAAA+AGG - chr7_4:46732925-46732944 None:intergenic 35.0%
GTCAAATAAGTACACGAGTT+AGG - chr7_4:46732961-46732980 None:intergenic 35.0%
CTCATGAGTTCAGTTCATTT+CGG - chr7_4:46733140-46733159 None:intergenic 35.0%
CATATGAACATGCATATTGG+AGG - chr7_4:46733601-46733620 None:intergenic 35.0%
TGGCATATGAACATGCATAT+TGG - chr7_4:46733604-46733623 None:intergenic 35.0%
ATATGCATGTTCATATGCCA+TGG + chr7_4:46733604-46733623 Msa1157670:intron 35.0%
! TTTGTTGTGTAGCCAAATTC+AGG + chr7_4:46733811-46733830 Msa1157670:intron 35.0%
!!! CATTTTTGGTTCCAAAAAGC+AGG + chr7_4:46734519-46734538 Msa1157670:intron 35.0%
!! TTTCCTTCTAACCTGCTTTT+TGG - chr7_4:46734533-46734552 None:intergenic 35.0%
CCAAAAGTTGCAAAGGAATT+GGG + chr7_4:46734662-46734681 Msa1157670:CDS 35.0%
TGACCTTCTCAAATTCATCA+AGG - chr7_4:46734844-46734863 None:intergenic 35.0%
GTCATGAGAATCAATGTAAC+AGG + chr7_4:46734860-46734879 Msa1157670:CDS 35.0%
AATGTAACAGGAGTTATTGC+AGG + chr7_4:46734872-46734891 Msa1157670:CDS 35.0%
TGATGATACCAAAGGGATAT+GGG + chr7_4:46735124-46735143 Msa1157670:CDS 35.0%
TTCGATATTGTGTAAGGATG+AGG - chr7_4:46735198-46735217 None:intergenic 35.0%
GTAGACTTCGATATTGTGTA+AGG - chr7_4:46735204-46735223 None:intergenic 35.0%
ATATCGAAGTCTACAATACC+TGG + chr7_4:46735210-46735229 Msa1157670:CDS 35.0%
TATCGAAGTCTACAATACCT+GGG + chr7_4:46735211-46735230 Msa1157670:CDS 35.0%
TGATACAATGACATTGGTGT+AGG - chr7_4:46735309-46735328 None:intergenic 35.0%
AATTTCCCCTATCTGTTCAT+AGG - chr7_4:46735358-46735377 None:intergenic 35.0%
AACATCAATGTCCTCACATT+TGG - chr7_4:46735409-46735428 None:intergenic 35.0%
GATGATGCTAAGTTTATCTC+AGG + chr7_4:46735456-46735475 Msa1157670:CDS 35.0%
!! AGAATCTCATAGTTGATGGA+GGG + chr7_4:46735481-46735500 Msa1157670:CDS 35.0%
TAGGGTTTAAATTGCGATCT+CGG + chr7_4:46735556-46735575 Msa1157670:three_prime_UTR 35.0%
!! AGAAGAGTGTTGACCTTTGA+TGG - chr7_4:46731603-46731622 None:intergenic 40.0%
AACCAAACCATTGCTGAAGT+TGG - chr7_4:46731851-46731870 None:intergenic 40.0%
AGCAGATTCTATGCAACAGT+TGG + chr7_4:46731880-46731899 Msa1157670:CDS 40.0%
AGATTCTATGCAACAGTTGG+TGG + chr7_4:46731883-46731902 Msa1157670:CDS 40.0%
AAAACGATGCAGTAGGAAGA+CGG + chr7_4:46732413-46732432 Msa1157670:intron 40.0%
TTTCGGTGATGTTTAAACGG+TGG + chr7_4:46732463-46732482 Msa1157670:intron 40.0%
! TGAGATTATTGGTGTTTGCG+AGG + chr7_4:46732517-46732536 Msa1157670:intron 40.0%
GAAGTTGTGGTCTTCGAATT+TGG + chr7_4:46732581-46732600 Msa1157670:intron 40.0%
CAGGAAACATCACCTAACAA+AGG - chr7_4:46732635-46732654 None:intergenic 40.0%
TTGTTAGGTGATGTTTCCTG+TGG + chr7_4:46732635-46732654 Msa1157670:intron 40.0%
AGACAATCTGAAAAAGCCAC+AGG - chr7_4:46732654-46732673 None:intergenic 40.0%
TCAGATTGTCTTAGATGCAC+GGG + chr7_4:46732663-46732682 Msa1157670:intron 40.0%
!!! GCGCTTTTTTGTGTTAACTC+CGG + chr7_4:46733198-46733217 Msa1157670:intron 40.0%
!!! CGCTTTTTTGTGTTAACTCC+GGG + chr7_4:46733199-46733218 Msa1157670:intron 40.0%
ACGGATTTCTGTGAAACACA+TGG + chr7_4:46733556-46733575 Msa1157670:intron 40.0%
CATCCTTCATCGCTAATTGA+AGG - chr7_4:46734100-46734119 None:intergenic 40.0%
CTTCAATTAGCGATGAAGGA+TGG + chr7_4:46734098-46734117 Msa1157670:intron 40.0%
GAAAGACAAAAGGAGTTGCT+TGG - chr7_4:46734445-46734464 None:intergenic 40.0%
TGTGAGAAAAGAAAGATGGG+GGG - chr7_4:46734467-46734486 None:intergenic 40.0%
GTGTGAGAAAAGAAAGATGG+GGG - chr7_4:46734468-46734487 None:intergenic 40.0%
GGTGTGAGAAAAGAAAGATG+GGG - chr7_4:46734469-46734488 None:intergenic 40.0%
GGGTGTGAGAAAAGAAAGAT+GGG - chr7_4:46734470-46734489 None:intergenic 40.0%
TGGGTGTGAGAAAAGAAAGA+TGG - chr7_4:46734471-46734490 None:intergenic 40.0%
GTTCCAAAAAGCAGGTTAGA+AGG + chr7_4:46734527-46734546 Msa1157670:intron 40.0%
ATCATAACTGGATCAGCAAG+TGG + chr7_4:46734560-46734579 Msa1157670:CDS 40.0%
CCCATGTTGGACAAATTCAT+GGG - chr7_4:46734603-46734622 None:intergenic 40.0%
CCCATGAATTTGTCCAACAT+GGG + chr7_4:46734600-46734619 Msa1157670:CDS 40.0%
CCATGAATTTGTCCAACATG+GGG + chr7_4:46734601-46734620 Msa1157670:CDS 40.0%
GCCAAAAGTTGCAAAGGAAT+TGG + chr7_4:46734661-46734680 Msa1157670:CDS 40.0%
! CCCAATTCCTTTGCAACTTT+TGG - chr7_4:46734665-46734684 None:intergenic 40.0%
ATTCCACATACTGTGCTGAA+TGG - chr7_4:46734688-46734707 None:intergenic 40.0%
GTTCACTGCTTCTTCTACTT+GGG - chr7_4:46734729-46734748 None:intergenic 40.0%
AGTTCACTGCTTCTTCTACT+TGG - chr7_4:46734730-46734749 None:intergenic 40.0%
GACATCATGTACAACAATGC+TGG + chr7_4:46734776-46734795 Msa1157670:CDS 40.0%
TACAACAATGCTGGCATAAC+AGG + chr7_4:46734785-46734804 Msa1157670:CDS 40.0%
! GTTATGCTTGGTGGGATTAT+TGG - chr7_4:46734812-46734831 None:intergenic 40.0%
CCAATTCTGTTATGCTTGGT+GGG - chr7_4:46734820-46734839 None:intergenic 40.0%
TCCAATTCTGTTATGCTTGG+TGG - chr7_4:46734821-46734840 None:intergenic 40.0%
AGGTCCAATTCTGTTATGCT+TGG - chr7_4:46734824-46734843 None:intergenic 40.0%
GGACCTTGATGAATTTGAGA+AGG + chr7_4:46734838-46734857 Msa1157670:CDS 40.0%
CGTTGCAGGTATAAAACATG+CGG + chr7_4:46735095-46735114 Msa1157670:intron 40.0%
GTGATGATACCAAAGGGATA+TGG + chr7_4:46735123-46735142 Msa1157670:CDS 40.0%
!! ATAATGGACCCATATCCCTT+TGG - chr7_4:46735135-46735154 None:intergenic 40.0%
!! TCAAGCATAAGTGGGCTATT+TGG + chr7_4:46735162-46735181 Msa1157670:CDS 40.0%
ATCGAAGTCTACAATACCTG+GGG + chr7_4:46735212-46735231 Msa1157670:CDS 40.0%
ATTGGTGTAGGAATTGCAGT+TGG - chr7_4:46735297-46735316 None:intergenic 40.0%
GTGTGACCTATGAACAGATA+GGG + chr7_4:46735349-46735368 Msa1157670:CDS 40.0%
TGTGACCTATGAACAGATAG+GGG + chr7_4:46735350-46735369 Msa1157670:CDS 40.0%
CAGATAGGGGAAATTGTTAG+TGG + chr7_4:46735363-46735382 Msa1157670:CDS 40.0%
GGTCAGAATCTCATAGTTGA+TGG + chr7_4:46735477-46735496 Msa1157670:CDS 40.0%
!! CAGAATCTCATAGTTGATGG+AGG + chr7_4:46735480-46735499 Msa1157670:CDS 40.0%
AAATTTCGCGTTTCCTTCTC+CGG + chr7_4:46735518-46735537 Msa1157670:CDS 40.0%
TTTCCTTCTCCGGATCAAAT+CGG + chr7_4:46735528-46735547 Msa1157670:CDS 40.0%
ACCAGAGCTAGATCCATCAA+AGG + chr7_4:46731587-46731606 Msa1157670:five_prime_UTR 45.0%
! ACCTTTGATGGATCTAGCTC+TGG - chr7_4:46731591-46731610 None:intergenic 45.0%
AAGCTCACCAACTTCAGCAA+TGG + chr7_4:46731841-46731860 Msa1157670:CDS 45.0%
CACCAACTTCAGCAATGGTT+TGG + chr7_4:46731846-46731865 Msa1157670:CDS 45.0%
!! ATGCAACAGTTGGTGGAAGA+AGG + chr7_4:46731890-46731909 Msa1157670:CDS 45.0%
TAATCAGGACCAGGGAATCA+AGG - chr7_4:46732017-46732036 None:intergenic 45.0%
GAGTAGCATAATCAGGACCA+GGG - chr7_4:46732025-46732044 None:intergenic 45.0%
AGAGTAGCATAATCAGGACC+AGG - chr7_4:46732026-46732045 None:intergenic 45.0%
TTAAACGGTGGCAAAATGGG+TGG + chr7_4:46732475-46732494 Msa1157670:intron 45.0%
! GGGAGGGTTAGTGAGATTAT+TGG + chr7_4:46732506-46732525 Msa1157670:intron 45.0%
TCTTAGATGCACGGGTCTAT+GGG + chr7_4:46732671-46732690 Msa1157670:intron 45.0%
CGGGTCTATGGGTTTACAAT+TGG + chr7_4:46732682-46732701 Msa1157670:intron 45.0%
GTACGTGTCTCTCACTTTAG+AGG + chr7_4:46732933-46732952 Msa1157670:intron 45.0%
TGACAGACTCTCACAACGTA+AGG + chr7_4:46733103-46733122 Msa1157670:intron 45.0%
GGACCTTCAATTAGCGATGA+AGG + chr7_4:46734094-46734113 Msa1157670:intron 45.0%
! CAAGTTGGAGGATGATGTTG+TGG - chr7_4:46734299-46734318 None:intergenic 45.0%
AAGATGGGGGGAAAGACAAA+AGG - chr7_4:46734455-46734474 None:intergenic 45.0%
! ATCAGCAAGTGGACTTGGAA+AGG + chr7_4:46734571-46734590 Msa1157670:CDS 45.0%
GCCCATGAATTTGTCCAACA+TGG + chr7_4:46734599-46734618 Msa1157670:CDS 45.0%
CCCCATGTTGGACAAATTCA+TGG - chr7_4:46734604-46734623 None:intergenic 45.0%
GTTGTCGGCGATGATTACTT+GGG - chr7_4:46734627-46734646 None:intergenic 45.0%
! CCCAAGTTTAGTGTCGTTGT+CGG - chr7_4:46734642-46734661 None:intergenic 45.0%
CCGACAACGACACTAAACTT+GGG + chr7_4:46734639-46734658 Msa1157670:CDS 45.0%
ACTTGGGCCAAAAGTTGCAA+AGG + chr7_4:46734655-46734674 Msa1157670:CDS 45.0%
GGAATGTGATGTCACTGTTG+AGG + chr7_4:46734703-46734722 Msa1157670:CDS 45.0%
CCCACCAAGCATAACAGAAT+TGG + chr7_4:46734817-46734836 Msa1157670:CDS 45.0%
CTGCAACGATGAGTTTACTG+TGG - chr7_4:46735083-46735102 None:intergenic 45.0%
CACAGTAAACTCATCGTTGC+AGG + chr7_4:46735081-46735100 Msa1157670:intron 45.0%
GCTCGAGTGATGATACCAAA+GGG + chr7_4:46735117-46735136 Msa1157670:CDS 45.0%
!! AGCATAAGTGGGCTATTTGG+TGG + chr7_4:46735165-46735184 Msa1157670:CDS 45.0%
!! GCATAAGTGGGCTATTTGGT+GGG + chr7_4:46735166-46735185 Msa1157670:CDS 45.0%
CTAGTGAACTATGTGGAGCT+GGG + chr7_4:46735250-46735269 Msa1157670:CDS 45.0%
ATCTGTTCATAGGTCACACC+AGG - chr7_4:46735348-46735367 None:intergenic 45.0%
GGTGTGACCTATGAACAGAT+AGG + chr7_4:46735348-46735367 Msa1157670:CDS 45.0%
! AGTGGACTTAGTGCTCTCAA+AGG + chr7_4:46735381-46735400 Msa1157670:CDS 45.0%
!! TCTCAAAGGTGCCAAATGTG+AGG + chr7_4:46735395-46735414 Msa1157670:CDS 45.0%
TGCTAGAGCTGCATTGTACT+TGG + chr7_4:46735428-46735447 Msa1157670:CDS 45.0%
!! TAACCGATTTGATCCGGAGA+AGG - chr7_4:46735534-46735553 None:intergenic 45.0%
!! CCTAGCTAACCGATTTGATC+CGG - chr7_4:46735540-46735559 None:intergenic 45.0%
! CGGATCAAATCGGTTAGCTA+GGG + chr7_4:46735538-46735557 Msa1157670:exon 45.0%
! GGCTAGTGTTCTGAGCATGA+TGG - chr7_4:46731660-46731679 None:intergenic 50.0%
TCATGCTCAGAACACTAGCC+AGG + chr7_4:46731660-46731679 Msa1157670:exon 50.0%
AATCTCACTAACCCTCCCGT+TGG - chr7_4:46732504-46732523 None:intergenic 50.0%
! TTGGTGTTTGCGAGGTGTGA+TGG + chr7_4:46732525-46732544 Msa1157670:intron 50.0%
!!! GTTGGGGGCTTTTGAAGTTG+TGG + chr7_4:46732568-46732587 Msa1157670:intron 50.0%
GTCTTAGATGCACGGGTCTA+TGG + chr7_4:46732670-46732689 Msa1157670:intron 50.0%
TGTGTTAACTCCGGGTCCTA+TGG + chr7_4:46733207-46733226 Msa1157670:intron 50.0%
GTGTTAACTCCGGGTCCTAT+GGG + chr7_4:46733208-46733227 Msa1157670:intron 50.0%
CATATTGGAGGCAAGCTTGC+GGG - chr7_4:46733589-46733608 None:intergenic 50.0%
GCATATTGGAGGCAAGCTTG+CGG - chr7_4:46733590-46733609 None:intergenic 50.0%
AGCGATGAAGGATGGAGTCA+TGG + chr7_4:46734106-46734125 Msa1157670:intron 50.0%
! ACTGGATCAGCAAGTGGACT+TGG + chr7_4:46734566-46734585 Msa1157670:CDS 50.0%
TGATTACTTGGGCCCCATGT+TGG - chr7_4:46734616-46734635 None:intergenic 50.0%
CGTTGTCGGCGATGATTACT+TGG - chr7_4:46734628-46734647 None:intergenic 50.0%
GCCGACAACGACACTAAACT+TGG + chr7_4:46734638-46734657 Msa1157670:CDS 50.0%
GGCTCGAGTGATGATACCAA+AGG + chr7_4:46735116-46735135 Msa1157670:CDS 50.0%
GAAGTCTACAATACCTGGGG+TGG + chr7_4:46735215-46735234 Msa1157670:CDS 50.0%
TCTGCGGCTAGTGAACTATG+TGG + chr7_4:46735243-46735262 Msa1157670:CDS 50.0%
GCTAGTGAACTATGTGGAGC+TGG + chr7_4:46735249-46735268 Msa1157670:CDS 50.0%
! CCGGATCAAATCGGTTAGCT+AGG + chr7_4:46735537-46735556 Msa1157670:exon 50.0%
AACGGTGGCAAAATGGGTGG+TGG + chr7_4:46732478-46732497 Msa1157670:intron 55.0%
! GCAAAATGGGTGGTGGCCAA+CGG + chr7_4:46732485-46732504 Msa1157670:intron 55.0%
! CAAAATGGGTGGTGGCCAAC+GGG + chr7_4:46732486-46732505 Msa1157670:intron 55.0%
TGGAGATAGCTGCTTGCGTG+AGG + chr7_4:46732545-46732564 Msa1157670:intron 55.0%
GGAGATAGCTGCTTGCGTGA+GGG + chr7_4:46732546-46732565 Msa1157670:intron 55.0%
ATAGCTGCTTGCGTGAGGGT+TGG + chr7_4:46732550-46732569 Msa1157670:intron 55.0%
TAGCTGCTTGCGTGAGGGTT+GGG + chr7_4:46732551-46732570 Msa1157670:intron 55.0%
!! TGACCAGCACAAGAGGTGCT+AGG - chr7_4:46732754-46732773 None:intergenic 55.0%
! TAGCACCTCTTGTGCTGGTC+AGG + chr7_4:46732753-46732772 Msa1157670:intron 55.0%
TGAGTCCTGACCAGCACAAG+AGG - chr7_4:46732761-46732780 None:intergenic 55.0%
AACTCCGGGTCCTATGGGAA+AGG + chr7_4:46733213-46733232 Msa1157670:intron 55.0%
ACTCCGGGTCCTATGGGAAA+GGG + chr7_4:46733214-46733233 Msa1157670:intron 55.0%
TGTCCCTTTCCCATAGGACC+CGG - chr7_4:46733220-46733239 None:intergenic 55.0%
! TGTCGGTGTCCCTTTCCCAT+AGG - chr7_4:46733226-46733245 None:intergenic 55.0%
ATGGGAAAGGGACACCGACA+TGG + chr7_4:46733226-46733245 Msa1157670:intron 55.0%
GGGCCATTCAGCACAGTATG+TGG + chr7_4:46734682-46734701 Msa1157670:CDS 55.0%
!! AGTGGGCTATTTGGTGGGCT+TGG + chr7_4:46735171-46735190 Msa1157670:CDS 55.0%
!! GTGGGCTATTTGGTGGGCTT+GGG + chr7_4:46735172-46735191 Msa1157670:CDS 55.0%
ACCTGGGGTGGTGAAATCTG+CGG + chr7_4:46735227-46735246 Msa1157670:CDS 55.0%
AGCTGCTTGCGTGAGGGTTG+GGG + chr7_4:46732552-46732571 Msa1157670:intron 60.0%
TGGCCTAGCACCTCTTGTGC+TGG + chr7_4:46732748-46732767 Msa1157670:intron 60.0%
! AATGGGTGGTGGCCAACGGG+AGG + chr7_4:46732489-46732508 Msa1157670:intron 65.0%
! ATGGGTGGTGGCCAACGGGA+GGG + chr7_4:46732490-46732509 Msa1157670:intron 65.0%
GCTGCTTGCGTGAGGGTTGG+GGG + chr7_4:46732553-46732572 Msa1157670:intron 65.0%
GCCGCAGATTTCACCACCCC+AGG - chr7_4:46735231-46735250 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 46731469 46735702 46731469 ID=Msa1157670;Name=Msa1157670
chr7_4 mRNA 46731469 46735702 46731469 ID=Msa1157670-mRNA-1;Parent=Msa1157670;Name=Msa1157670-mRNA-1;_AED=0.14;_eAED=0.14;_QI=193|1|1|1|1|1|4|148|300
chr7_4 exon 46731469 46731681 46731469 ID=Msa1157670-mRNA-1:exon:12277;Parent=Msa1157670-mRNA-1
chr7_4 exon 46731834 46731911 46731834 ID=Msa1157670-mRNA-1:exon:12278;Parent=Msa1157670-mRNA-1
chr7_4 exon 46734541 46734893 46734541 ID=Msa1157670-mRNA-1:exon:12279;Parent=Msa1157670-mRNA-1
chr7_4 exon 46735103 46735702 46735103 ID=Msa1157670-mRNA-1:exon:12280;Parent=Msa1157670-mRNA-1
chr7_4 five_prime_UTR 46731469 46731661 46731469 ID=Msa1157670-mRNA-1:five_prime_utr;Parent=Msa1157670-mRNA-1
chr7_4 CDS 46731662 46731681 46731662 ID=Msa1157670-mRNA-1:cds;Parent=Msa1157670-mRNA-1
chr7_4 CDS 46731834 46731911 46731834 ID=Msa1157670-mRNA-1:cds;Parent=Msa1157670-mRNA-1
chr7_4 CDS 46734541 46734893 46734541 ID=Msa1157670-mRNA-1:cds;Parent=Msa1157670-mRNA-1
chr7_4 CDS 46735103 46735554 46735103 ID=Msa1157670-mRNA-1:cds;Parent=Msa1157670-mRNA-1
chr7_4 three_prime_UTR 46735555 46735702 46735555 ID=Msa1157670-mRNA-1:three_prime_utr;Parent=Msa1157670-mRNA-1
Gene Sequence

>Msa1157670

ATGCTCAGAACACTAGCCAGGGAGTTGAAGCTCACCAACTTCAGCAATGGTTTGGTTAAAAAACGCAGCAGATTCTATGCAACAGTTGGTGGAAGAAGGTTAGAAGGAAAAATTGCAATCATAACTGGATCAGCAAGTGGACTTGGAAAGGCAACAGCCCATGAATTTGTCCAACATGGGGCCCAAGTAATCATCGCCGACAACGACACTAAACTTGGGCCAAAAGTTGCAAAGGAATTGGGCCATTCAGCACAGTATGTGGAATGTGATGTCACTGTTGAGGCCCAAGTAGAAGAAGCAGTGAACTTTGCCATAACAAACTATGGTAAACTAGACATCATGTACAACAATGCTGGCATAACAGGACCAATAATCCCACCAAGCATAACAGAATTGGACCTTGATGAATTTGAGAAGGTCATGAGAATCAATGTAACAGGAGTTATTGCAGGTATAAAACATGCGGCTCGAGTGATGATACCAAAGGGATATGGGTCCATTATATGTACATCAAGCATAAGTGGGCTATTTGGTGGGCTTGGGCCTCATCCTTACACAATATCGAAGTCTACAATACCTGGGGTGGTGAAATCTGCGGCTAGTGAACTATGTGGAGCTGGGATTAGAGTCAATTGCATATCACCAACTGCAATTCCTACACCAATGTCATTGTATCAAATTGGAAAGTTTATTCCTGGTGTGACCTATGAACAGATAGGGGAAATTGTTAGTGGACTTAGTGCTCTCAAAGGTGCCAAATGTGAGGACATTGATGTTGCTAGAGCTGCATTGTACTTGGCATCAGATGATGCTAAGTTTATCTCAGGTCAGAATCTCATAGTTGATGGAGGGTTCACTTCCATTAAAAATTTCGCGTTTCCTTCTCCGGATCAAATCGGTTAG
Protein sequence

>Msa1157670

MLRTLARELKLTNFSNGLVKKRSRFYATVGGRRLEGKIAIITGSASGLGKATAHEFVQHGAQVIIADNDTKLGPKVAKELGHSAQYVECDVTVEAQVEEAVNFAITNYGKLDIMYNNAGITGPIIPPSITELDLDEFEKVMRINVTGVIAGIKHAARVMIPKGYGSIICTSSISGLFGGLGPHPYTISKSTIPGVVKSAASELCGAGIRVNCISPTAIPTPMSLYQIGKFIPGVTYEQIGEIVSGLSALKGAKCEDIDVARAALYLASDDAKFISGQNLIVDGGFTSIKNFAFPSPDQIG*