Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561300 | RHN62838.1 | 91.101 | 427 | 29 | 2 | 1 | 426 | 23 | 441 | 0.0 | 806 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561300 | A0A396IDH0 | 91.101 | 427 | 29 | 2 | 1 | 426 | 23 | 441 | 0.0 | 806 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0051960 | Msa0561300 | 0.803676 | 3.110958e-49 | -8.615850e-47 |
| Msa0094710 | Msa0561300 | 0.802569 | 5.272020e-49 | -8.615850e-47 |
| Msa0095940 | Msa0561300 | 0.808853 | 2.525590e-50 | -8.615850e-47 |
| Msa0101960 | Msa0561300 | 0.802249 | 6.136901e-49 | -8.615850e-47 |
| Msa0193190 | Msa0561300 | 0.846929 | 1.594251e-59 | -8.615850e-47 |
| Msa0374890 | Msa0561300 | 0.801575 | 8.441478e-49 | -8.615850e-47 |
| Msa0264680 | Msa0561300 | 0.824177 | 9.295143e-54 | -8.615850e-47 |
| Msa0273070 | Msa0561300 | 0.821241 | 4.483097e-53 | -8.615850e-47 |
| Msa0302730 | Msa0561300 | 0.826020 | 3.411245e-54 | -8.615850e-47 |
| Msa0306310 | Msa0561300 | 0.828174 | 1.040774e-54 | -8.615850e-47 |
| Msa0345890 | Msa0561300 | 0.804674 | 1.928991e-49 | -8.615850e-47 |
| Msa0497120 | Msa0561300 | 0.800112 | 1.678938e-48 | -8.615850e-47 |
| Msa0517270 | Msa0561300 | 0.832540 | 8.918897e-56 | -8.615850e-47 |
| Msa0561300 | Msa0600590 | 0.831641 | 1.487911e-55 | -8.615850e-47 |
| Msa0561300 | Msa0631130 | 0.802819 | 4.681196e-49 | -8.615850e-47 |
| Msa0561300 | Msa0641130 | 0.828440 | 8.982555e-55 | -8.615850e-47 |
| Msa0561300 | Msa0650560 | 0.805883 | 1.076642e-49 | -8.615850e-47 |
| Msa0561300 | Msa0654640 | 0.901716 | 2.022634e-78 | -8.615850e-47 |
| Msa0561300 | Msa0790920 | 0.815450 | 9.190148e-52 | -8.615850e-47 |
| Msa0561300 | Msa0804870 | 0.823358 | 1.445994e-53 | -8.615850e-47 |
| Msa0561300 | Msa0832950 | 0.815614 | 8.445665e-52 | -8.615850e-47 |
| Msa0561300 | Msa0833270 | 0.818564 | 1.834917e-52 | -8.615850e-47 |
| Msa0561300 | Msa0840780 | 0.807665 | 4.522830e-50 | -8.615850e-47 |
| Msa0561300 | Msa0863990 | 0.804883 | 1.744117e-49 | -8.615850e-47 |
| Msa0561300 | Msa1011250 | 0.803149 | 4.000908e-49 | -8.615850e-47 |
| Msa0561300 | Msa1069890 | 0.804357 | 2.246016e-49 | -8.615850e-47 |
| Msa0561300 | Msa1157110 | 0.807041 | 6.135756e-50 | -8.615850e-47 |
| Msa0561300 | Msa1157670 | 0.813745 | 2.191158e-51 | -8.615850e-47 |
| Msa0561300 | Msa1180430 | 0.807717 | 4.410263e-50 | -8.615850e-47 |
| Msa0561300 | Msa1208990 | 0.802962 | 4.372728e-49 | -8.615850e-47 |
| Msa0561300 | Msa1225580 | 0.819643 | 1.042656e-52 | -8.615850e-47 |
| Msa0561300 | Msa1256060 | 0.852136 | 5.627980e-61 | -8.615850e-47 |
| Msa0561300 | Msa1296240 | 0.835596 | 1.530578e-56 | -8.615850e-47 |
| Msa0561300 | Msa1355510 | 0.822673 | 2.088716e-53 | -8.615850e-47 |
| Msa0561300 | Msa1395250 | 0.800771 | 1.232806e-48 | -8.615850e-47 |
| Msa0561300 | Msa1404050 | 0.809297 | 2.028245e-50 | -8.615850e-47 |
| Msa0561300 | Msa1435320 | 0.825097 | 5.645492e-54 | -8.615850e-47 |
| Msa0561300 | Msa1443400 | 0.828813 | 7.295108e-55 | -8.615850e-47 |
| Msa0561300 | Msa1448040 | 0.827804 | 1.277843e-54 | -8.615850e-47 |
| Msa0561300 | Msa1451990 | 0.819810 | 9.549806e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561300 | MtrunA17_Chr4g0051761 | 91.101 | 427 | 29 | 2 | 1 | 426 | 23 | 441 | 0.0 | 806 |
| Msa0561300 | MtrunA17_Chr4g0051701 | 84.848 | 429 | 63 | 2 | 1 | 427 | 1 | 429 | 0.0 | 756 |
| Msa0561300 | MtrunA17_Chr4g0051681 | 83.721 | 430 | 68 | 2 | 7 | 434 | 8 | 437 | 0.0 | 750 |
| Msa0561300 | MtrunA17_Chr4g0051711 | 82.989 | 435 | 73 | 1 | 1 | 434 | 1 | 435 | 0.0 | 749 |
| Msa0561300 | MtrunA17_Chr4g0051821 | 82.464 | 422 | 74 | 0 | 7 | 428 | 8 | 429 | 0.0 | 732 |
| Msa0561300 | MtrunA17_Chr4g0051731 | 82.227 | 422 | 65 | 1 | 13 | 434 | 1 | 412 | 0.0 | 721 |
| Msa0561300 | MtrunA17_Chr6g0468811 | 78.060 | 433 | 94 | 1 | 1 | 432 | 1 | 433 | 0.0 | 717 |
| Msa0561300 | MtrunA17_Chr6g0468791 | 77.647 | 425 | 89 | 3 | 3 | 426 | 2 | 421 | 0.0 | 671 |
| Msa0561300 | MtrunA17_Chr2g0292581 | 60.880 | 409 | 150 | 4 | 9 | 415 | 12 | 412 | 0.0 | 540 |
| Msa0561300 | MtrunA17_Chr1g0173751 | 62.371 | 388 | 137 | 2 | 29 | 415 | 33 | 412 | 0.0 | 527 |
| Msa0561300 | MtrunA17_Chr1g0173761 | 59.048 | 420 | 159 | 4 | 1 | 415 | 1 | 412 | 0.0 | 527 |
| Msa0561300 | MtrunA17_Chr2g0292621 | 58.950 | 419 | 160 | 3 | 1 | 415 | 1 | 411 | 0.0 | 524 |
| Msa0561300 | MtrunA17_Chr2g0292611 | 58.275 | 429 | 149 | 3 | 9 | 415 | 31 | 451 | 0.0 | 524 |
| Msa0561300 | MtrunA17_Chr4g0051791 | 72.468 | 316 | 53 | 2 | 113 | 428 | 2 | 283 | 5.68e-163 | 460 |
| Msa0561300 | MtrunA17_Chr8g0353201 | 44.524 | 420 | 210 | 8 | 1 | 411 | 1 | 406 | 2.55e-130 | 382 |
| Msa0561300 | MtrunA17_Chr1g0180281 | 43.128 | 422 | 217 | 9 | 1 | 412 | 5 | 413 | 8.93e-125 | 368 |
| Msa0561300 | MtrunA17_Chr1g0180271 | 42.694 | 438 | 221 | 11 | 1 | 427 | 5 | 423 | 1.89e-124 | 367 |
| Msa0561300 | MtrunA17_Chr6g0487311 | 41.549 | 426 | 224 | 8 | 1 | 409 | 1 | 418 | 4.17e-123 | 364 |
| Msa0561300 | MtrunA17_Chr6g0487401 | 42.686 | 417 | 198 | 7 | 1 | 409 | 33 | 416 | 7.84e-122 | 360 |
| Msa0561300 | MtrunA17_Chr6g0471901 | 38.257 | 413 | 187 | 7 | 7 | 412 | 8 | 359 | 7.92e-99 | 300 |
| Msa0561300 | MtrunA17_Chr2g0292641 | 68.519 | 162 | 51 | 0 | 254 | 415 | 1 | 162 | 6.03e-79 | 241 |
| Msa0561300 | MtrunA17_Chr2g0292631 | 54.651 | 172 | 70 | 1 | 11 | 182 | 15 | 178 | 5.58e-62 | 198 |
| Msa0561300 | MtrunA17_Chr1g0162771 | 41.204 | 216 | 117 | 3 | 7 | 215 | 8 | 220 | 3.74e-54 | 179 |
| Msa0561300 | MtrunA17_Chr4g0051801 | 85.263 | 95 | 13 | 1 | 1 | 94 | 1 | 95 | 1.25e-51 | 169 |
| Msa0561300 | MtrunA17_Chr1g0162761 | 60.563 | 71 | 28 | 0 | 313 | 383 | 2 | 72 | 4.83e-25 | 97.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0561300 | AT5G61820.2 | 56.867 | 415 | 158 | 7 | 11 | 411 | 12 | 419 | 2.65e-164 | 471 |
| Msa0561300 | AT5G61820.1 | 56.867 | 415 | 158 | 7 | 11 | 411 | 12 | 419 | 2.65e-164 | 471 |
Find 124 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGCACATCAATATTAAAA+AGG | 0.251772 | 4_1:+60817437 | None:intergenic |
| CCATTACTCCAGTGTGTTCT+TGG | 0.254712 | 4_1:+60815412 | None:intergenic |
| CAGAAGGGTCCGAGGATAAA+TGG | 0.264972 | 4_1:-60816713 | Msa0561300:CDS |
| ATCTAAGATACACAGTAAAA+TGG | 0.267275 | 4_1:-60816488 | Msa0561300:CDS |
| AATTTCAAAGTAGTCTTCTT+AGG | 0.275523 | 4_1:+60817352 | None:intergenic |
| CAGGTCCTAACTCGAATTTC+GGG | 0.281315 | 4_1:+60817087 | None:intergenic |
| CCAGGTCCTAACTCGAATTT+CGG | 0.291077 | 4_1:+60817086 | None:intergenic |
| GGAATTGGATCCACCCTATA+TGG | 0.332124 | 4_1:-60815922 | Msa0561300:CDS |
| TGGAAATTACCTGTCCATAT+AGG | 0.336191 | 4_1:+60815908 | None:intergenic |
| CAAGAACACACTGGAGTAAT+GGG | 0.339184 | 4_1:-60815411 | Msa0561300:CDS |
| TGTTGCTGTTCCTCGTGTTT+CGG | 0.340641 | 4_1:+60816785 | None:intergenic |
| CATCAGCATTCAGGTGGAAT+TGG | 0.345957 | 4_1:-60815937 | Msa0561300:CDS |
| GGAAATTACCTGTCCATATA+GGG | 0.348859 | 4_1:+60815909 | None:intergenic |
| TAAGTTTCATGGAGAGGTAT+AGG | 0.349623 | 4_1:+60816966 | None:intergenic |
| GGTGTTGCACATCAGCATTC+AGG | 0.372185 | 4_1:-60815946 | Msa0561300:CDS |
| ACACAGTAAAATGGGTTGAT+TGG | 0.378269 | 4_1:-60816479 | Msa0561300:CDS |
| TACTTATATGATAATATAAC+TGG | 0.378444 | 4_1:-60815281 | Msa0561300:three_prime_UTR |
| CATTGCAATTGTAATGCAAA+AGG | 0.383053 | 4_1:-60814954 | Msa0561300:three_prime_UTR |
| GCAATACTTCTGCTATTGTT+TGG | 0.383102 | 4_1:-60817173 | Msa0561300:CDS |
| GAGTAGAATGTCTGAGTTGA+TGG | 0.383708 | 4_1:+60815352 | None:intergenic |
| TGAAACTTATCTCCATCATT+GGG | 0.386239 | 4_1:-60816952 | Msa0561300:CDS |
| ATGAAACTTATCTCCATCAT+TGG | 0.388395 | 4_1:-60816953 | Msa0561300:CDS |
| ATCTCTATACCGAAAGGTTC+CGG | 0.388605 | 4_1:+60816756 | None:intergenic |
| TTGTCCCCGAAATTCGAGTT+AGG | 0.393897 | 4_1:-60817092 | Msa0561300:CDS |
| CGTGGCGTGGAGGATAAGTT+AGG | 0.394688 | 4_1:-60816663 | Msa0561300:CDS |
| AATGTTACGGTGGATGAATA+TGG | 0.394757 | 4_1:-60816612 | Msa0561300:CDS |
| GAGGAACAGTGGCATATGTC+AGG | 0.396372 | 4_1:-60816841 | Msa0561300:CDS |
| AATGATGGAGATAAGTTTCA+TGG | 0.396431 | 4_1:+60816955 | None:intergenic |
| CTTAGATAGAGGCTTCTCTT+TGG | 0.397938 | 4_1:+60816504 | None:intergenic |
| TGTTCTTCCATACCACGTTA+TGG | 0.398792 | 4_1:-60815561 | Msa0561300:CDS |
| CACAGTAAAATGGGTTGATT+GGG | 0.401945 | 4_1:-60816478 | Msa0561300:CDS |
| TCAATTATATATATCTTAAC+AGG | 0.405782 | 4_1:+60816441 | None:intergenic |
| ACTGGTGGCTATGTGATCTA+TGG | 0.406576 | 4_1:-60815967 | Msa0561300:CDS |
| ACAGATATTCCGGAACCTTT+CGG | 0.411010 | 4_1:-60816765 | Msa0561300:CDS |
| ATGAATATGGAAGGTCTATA+AGG | 0.411102 | 4_1:-60816599 | Msa0561300:CDS |
| TATAACTGGCGTGTCATTGA+TGG | 0.411833 | 4_1:-60815267 | Msa0561300:three_prime_UTR |
| CAGAACTTTGAAGCATCCTT+TGG | 0.412728 | 4_1:+60816877 | None:intergenic |
| TTACTGTGTATCTTAGATAG+AGG | 0.415894 | 4_1:+60816493 | None:intergenic |
| ACATAGCCACCAGTTTGAAA+TGG | 0.422102 | 4_1:+60815976 | None:intergenic |
| AGGAACAGCAACAGATATTC+CGG | 0.425269 | 4_1:-60816775 | Msa0561300:CDS |
| AATACTCTTGGACAATACTT+TGG | 0.427743 | 4_1:-60816816 | Msa0561300:CDS |
| TCTATAAGGCCAGATTATAA+AGG | 0.432793 | 4_1:-60816585 | Msa0561300:CDS |
| AACCAACCTCCTTTATAATC+TGG | 0.436373 | 4_1:+60816576 | None:intergenic |
| CTTGGACAATACTTTGGCAT+TGG | 0.442628 | 4_1:-60816810 | Msa0561300:CDS |
| TCAATTATCGTGACGGAACC+TGG | 0.451783 | 4_1:+60815474 | None:intergenic |
| TTGAGTGCAATATGACCTCT+TGG | 0.455360 | 4_1:+60817026 | None:intergenic |
| CCAAGAACACACTGGAGTAA+TGG | 0.458171 | 4_1:-60815412 | Msa0561300:CDS |
| ATCGTGACGGAACCTGGTTT+AGG | 0.460036 | 4_1:+60815480 | None:intergenic |
| TCTAAGATACACAGTAAAAT+GGG | 0.465087 | 4_1:-60816487 | Msa0561300:CDS |
| AATGAGACAGGCTACATTGT+AGG | 0.466676 | 4_1:-60815519 | Msa0561300:CDS |
| GAACCTTTCGGTATAGAGAT+AGG | 0.466983 | 4_1:-60816753 | Msa0561300:CDS |
| CTCCACGCCACGTGTATCAA+TGG | 0.468315 | 4_1:+60816674 | None:intergenic |
| CCGAAATTCGAGTTAGGACC+TGG | 0.469785 | 4_1:-60817086 | Msa0561300:CDS |
| CATAGCCACCAGTTTGAAAT+GGG | 0.475271 | 4_1:+60815977 | None:intergenic |
| ATCTGATAGTTTCAAAGTAT+CGG | 0.483069 | 4_1:+60816413 | None:intergenic |
| TCTTTATTGATAACTGATCC+AGG | 0.484752 | 4_1:+60817068 | None:intergenic |
| ATTGCAATTGTAATGCAAAA+GGG | 0.487504 | 4_1:-60814953 | Msa0561300:three_prime_UTR |
| GTGCGAGCTTTATAATGTTA+CGG | 0.488201 | 4_1:-60816625 | Msa0561300:CDS |
| AAACTATCAGATAACTCAAA+AGG | 0.488445 | 4_1:-60816402 | Msa0561300:CDS |
| ACAAGTCTCCCATTTCAAAC+TGG | 0.501575 | 4_1:-60815985 | Msa0561300:CDS |
| TTGTACACAGTGCAAGTTGA+AGG | 0.504293 | 4_1:-60816541 | Msa0561300:CDS |
| AGAAGGGTCCGAGGATAAAT+GGG | 0.505079 | 4_1:-60816712 | Msa0561300:CDS |
| ATCTTGCAACACCCCAATGA+TGG | 0.507927 | 4_1:+60816940 | None:intergenic |
| TCCATACCACGTTATGGAGA+TGG | 0.510380 | 4_1:-60815555 | Msa0561300:CDS |
| GCCACTGAAAATACAAACTT+AGG | 0.511667 | 4_1:+60817194 | None:intergenic |
| GGTTCCGTCACGATAATTGA+TGG | 0.511998 | 4_1:-60815471 | Msa0561300:CDS |
| TCCATCTCCATAACGTGGTA+TGG | 0.512548 | 4_1:+60815554 | None:intergenic |
| GACCCTTCTGAAACCTCTGC+AGG | 0.513932 | 4_1:+60816726 | None:intergenic |
| ACAAACCACAAGGAGCGAAA+TGG | 0.515563 | 4_1:-60816027 | Msa0561300:CDS |
| ATATGTCAGGGAAATACTCT+TGG | 0.523938 | 4_1:-60816828 | Msa0561300:CDS |
| TTTCATGATTTCAGGATGGG+AGG | 0.525371 | 4_1:-60815590 | Msa0561300:intron |
| TATGGAGATGGAAACGAAGC+AGG | 0.527503 | 4_1:-60815543 | Msa0561300:CDS |
| CACAGCCATTTCGCTCCTTG+TGG | 0.529057 | 4_1:+60816022 | None:intergenic |
| GTCACACACACAAGAAATGA+TGG | 0.529849 | 4_1:-60816900 | Msa0561300:CDS |
| AGCTTAATTCAATTCATCAA+AGG | 0.535584 | 4_1:-60817378 | Msa0561300:five_prime_UTR |
| GGCCAGATTATAAAGGAGGT+TGG | 0.552111 | 4_1:-60816578 | Msa0561300:CDS |
| TGGATCCACCCTATATGGAC+AGG | 0.552599 | 4_1:-60815917 | Msa0561300:intron |
| TTCACAAAAGGTAAATCAAG+AGG | 0.553544 | 4_1:+60817320 | None:intergenic |
| AACGAAGCAGGAAATGAGAC+AGG | 0.557757 | 4_1:-60815531 | Msa0561300:CDS |
| ACAGAATTTGCAAATTGCAC+AGG | 0.562645 | 4_1:+60817418 | None:intergenic |
| TTCATGATTTCAGGATGGGA+GGG | 0.563353 | 4_1:-60815589 | Msa0561300:intron |
| GTGGCGTGGAGGATAAGTTA+GGG | 0.565799 | 4_1:-60816662 | Msa0561300:CDS |
| ATGGCTGTGTTAATGTAAAG+AGG | 0.565801 | 4_1:-60816008 | Msa0561300:CDS |
| TGCCATTGATACACGTGGCG+TGG | 0.583642 | 4_1:-60816676 | Msa0561300:CDS |
| TTCACCATCAATTATCGTGA+CGG | 0.588512 | 4_1:+60815467 | None:intergenic |
| ATTGCAATGAAGCAGCTACA+TGG | 0.592995 | 4_1:+60814968 | None:intergenic |
| ATTAAGCACCCATTTATCCT+CGG | 0.597914 | 4_1:+60816704 | None:intergenic |
| ACACAGTGCAAGTTGAAGGA+AGG | 0.600179 | 4_1:-60816537 | Msa0561300:CDS |
| GAACTCTGATCATGATTGCA+AGG | 0.603932 | 4_1:-60816376 | Msa0561300:intron |
| TCAACTTGTTATCCTAAACC+AGG | 0.605101 | 4_1:-60815492 | Msa0561300:CDS |
| GTTCTGATATTGTGAAAGTG+AGG | 0.606469 | 4_1:-60816860 | Msa0561300:CDS |
| AATCCTGCAGAGGTTTCAGA+AGG | 0.606888 | 4_1:-60816729 | Msa0561300:CDS |
| ATCTAGTGACGAAATTAGAG+AGG | 0.606918 | 4_1:-60815159 | Msa0561300:three_prime_UTR |
| AGGGCAACAATATATACTGT+GGG | 0.607279 | 4_1:+60817457 | None:intergenic |
| AGGAACAGTGGCATATGTCA+GGG | 0.613732 | 4_1:-60816840 | Msa0561300:CDS |
| AAGGGCAACAATATATACTG+TGG | 0.615173 | 4_1:+60817456 | None:intergenic |
| GAATGTCTGAGTTGATGGTA+TGG | 0.615297 | 4_1:+60815357 | None:intergenic |
| GCTGAAGTAGTTGATGAAGA+TGG | 0.618761 | 4_1:-60816993 | Msa0561300:CDS |
| AATTAAGCTTACAATAAACA+AGG | 0.623359 | 4_1:+60817392 | None:intergenic |
| TGGAGATAAGTTTCATGGAG+AGG | 0.630553 | 4_1:+60816960 | None:intergenic |
| AGTCTCCCATTTCAAACTGG+TGG | 0.630697 | 4_1:-60815982 | Msa0561300:CDS |
| AATTACCTGTCCATATAGGG+TGG | 0.632679 | 4_1:+60815912 | None:intergenic |
| CATTGATACACGTGGCGTGG+AGG | 0.634415 | 4_1:-60816673 | Msa0561300:CDS |
| ATCTTGCAGCACAAACCACA+AGG | 0.636798 | 4_1:-60816037 | Msa0561300:CDS |
| TTACGACGAGGAAATTTGTG+AGG | 0.636821 | 4_1:+60815183 | None:intergenic |
| TCTAGTGACGAAATTAGAGA+GGG | 0.641824 | 4_1:-60815158 | Msa0561300:three_prime_UTR |
| ATAAGGCCAGATTATAAAGG+AGG | 0.643505 | 4_1:-60816582 | Msa0561300:CDS |
| TTACGGTGGATGAATATGGA+AGG | 0.644081 | 4_1:-60816608 | Msa0561300:CDS |
| TTACCTATCTCTATACCGAA+AGG | 0.645143 | 4_1:+60816750 | None:intergenic |
| AACAATAGCCAAGAACACAC+TGG | 0.645606 | 4_1:-60815420 | Msa0561300:CDS |
| ACACAAGAAATGATGGCCAA+AGG | 0.645745 | 4_1:-60816893 | Msa0561300:CDS |
| TTAGGGAGGAAAATTAGTGA+CGG | 0.645999 | 4_1:-60815219 | Msa0561300:three_prime_UTR |
| GTTGCACATCAGCATTCAGG+TGG | 0.648323 | 4_1:-60815943 | Msa0561300:CDS |
| TCGTTTCCATCTCCATAACG+TGG | 0.662395 | 4_1:+60815549 | None:intergenic |
| GGCATTGGATCCGAAACACG+AGG | 0.662444 | 4_1:-60816795 | Msa0561300:CDS |
| AGAGATAGGTAATCCTGCAG+AGG | 0.665825 | 4_1:-60816739 | Msa0561300:CDS |
| AGAGGTTTCAGAAGGGTCCG+AGG | 0.677663 | 4_1:-60816721 | Msa0561300:CDS |
| GAAACTTATCTCCATCATTG+GGG | 0.685791 | 4_1:-60816951 | Msa0561300:CDS |
| AAGAACACACTGGAGTAATG+GGG | 0.686123 | 4_1:-60815410 | Msa0561300:CDS |
| CGAGCTTTATAATGTTACGG+TGG | 0.698006 | 4_1:-60816622 | Msa0561300:CDS |
| GTTCATGCCATTGATACACG+TGG | 0.703873 | 4_1:-60816681 | Msa0561300:CDS |
| AGGTCCTAACTCGAATTTCG+GGG | 0.706831 | 4_1:+60817088 | None:intergenic |
| ATCCTGCAGAGGTTTCAGAA+GGG | 0.717685 | 4_1:-60816728 | Msa0561300:CDS |
| ATTGTGAAAGTGAGGAACAG+TGG | 0.726055 | 4_1:-60816852 | Msa0561300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTACTAATATATATTTTTC+TGG | - | chr4_1:60815159-60815178 | Msa0561300:three_prime_UTR | 10.0% |
| !!! | AAATGTATTATTTTCACAAA+AGG | + | chr4_1:60815092-60815111 | None:intergenic | 15.0% |
| !! | TCAATTATATATATCTTAAC+AGG | + | chr4_1:60815959-60815978 | None:intergenic | 15.0% |
| !! | TATAATCTATCTTTAACTAA+TGG | + | chr4_1:60816512-60816531 | None:intergenic | 15.0% |
| !! | TATACTAATTCTTAAATAGT+TGG | - | chr4_1:60816528-60816547 | Msa0561300:CDS | 15.0% |
| !! | TACTTATATGATAATATAAC+TGG | - | chr4_1:60817116-60817135 | Msa0561300:CDS | 15.0% |
| !! | AATTAAGCTTACAATAAACA+AGG | + | chr4_1:60815008-60815027 | None:intergenic | 20.0% |
| !! | TATTACATGAACAAATAGAA+GGG | + | chr4_1:60816631-60816650 | None:intergenic | 20.0% |
| !!! | TTGCTTGTTAATTAAACATT+TGG | + | chr4_1:60816671-60816690 | None:intergenic | 20.0% |
| !! | ATGTTTAATTAACAAGCAAA+TGG | - | chr4_1:60816672-60816691 | Msa0561300:CDS | 20.0% |
| !! | TACTAGAAAAAGCAAAATTA+GGG | - | chr4_1:60817161-60817180 | Msa0561300:CDS | 20.0% |
| !! | TAAAAAACAAAAAGTAGTGA+GGG | + | chr4_1:60817291-60817310 | None:intergenic | 20.0% |
| !! | AATAAAGACATGATTGTAAA+GGG | - | chr4_1:60817348-60817367 | Msa0561300:five_prime_UTR | 20.0% |
| ! | AGGCACATCAATATTAAAAA+GGG | + | chr4_1:60814962-60814981 | None:intergenic | 25.0% |
| ! | AGCTTAATTCAATTCATCAA+AGG | - | chr4_1:60815019-60815038 | Msa0561300:intron | 25.0% |
| ! | AATTTCAAAGTAGTCTTCTT+AGG | + | chr4_1:60815048-60815067 | None:intergenic | 25.0% |
| ! | TTCAAAAAAGAACTTAAGCA+TGG | + | chr4_1:60815254-60815273 | None:intergenic | 25.0% |
| !!! | TATGATATTGATTTTCCAAG+AGG | - | chr4_1:60815356-60815375 | Msa0561300:CDS | 25.0% |
| !! | ATCTAAGATACACAGTAAAA+TGG | - | chr4_1:60815909-60815928 | Msa0561300:intron | 25.0% |
| !! | TCTAAGATACACAGTAAAAT+GGG | - | chr4_1:60815910-60815929 | Msa0561300:intron | 25.0% |
| ! | ATCTGATAGTTTCAAAGTAT+CGG | + | chr4_1:60815987-60816006 | None:intergenic | 25.0% |
| ! | AAACTATCAGATAACTCAAA+AGG | - | chr4_1:60815995-60816014 | Msa0561300:CDS | 25.0% |
| !! | TTTATATTTTGTGAACTGAC+TGG | + | chr4_1:60816102-60816121 | None:intergenic | 25.0% |
| ! | AGACAAACAAACTACAAATT+TGG | + | chr4_1:60816243-60816262 | None:intergenic | 25.0% |
| ! | GATTAAAGATGTATATGAGT+CGG | - | chr4_1:60816567-60816586 | Msa0561300:CDS | 25.0% |
| ! | CTATTACATGAACAAATAGA+AGG | + | chr4_1:60816632-60816651 | None:intergenic | 25.0% |
| !! | CATGTAATAGTTTTCAATTG+AGG | - | chr4_1:60816642-60816661 | Msa0561300:CDS | 25.0% |
| ! | AAATTGTGTTTCATGATTTC+AGG | - | chr4_1:60816799-60816818 | Msa0561300:CDS | 25.0% |
| !!! | TACTCGTTCTTCATTTTTTA+TGG | - | chr4_1:60817063-60817082 | Msa0561300:CDS | 25.0% |
| ! | CTACTAGAAAAAGCAAAATT+AGG | - | chr4_1:60817160-60817179 | Msa0561300:CDS | 25.0% |
| ! | CTAAAAAACAAAAAGTAGTG+AGG | + | chr4_1:60817292-60817311 | None:intergenic | 25.0% |
| ! | GAATAAAGACATGATTGTAA+AGG | - | chr4_1:60817347-60817366 | Msa0561300:five_prime_UTR | 25.0% |
| ! | ATTGCAATTGTAATGCAAAA+GGG | - | chr4_1:60817444-60817463 | Msa0561300:five_prime_UTR | 25.0% |
| CAGGCACATCAATATTAAAA+AGG | + | chr4_1:60814963-60814982 | None:intergenic | 30.0% | |
| TTCACAAAAGGTAAATCAAG+AGG | + | chr4_1:60815080-60815099 | None:intergenic | 30.0% | |
| ! | ACCTAAGTTTGTATTTTCAG+TGG | - | chr4_1:60815202-60815221 | Msa0561300:three_prime_UTR | 30.0% |
| ! | TCTTTATTGATAACTGATCC+AGG | + | chr4_1:60815332-60815351 | None:intergenic | 30.0% |
| ! | AATGATGGAGATAAGTTTCA+TGG | + | chr4_1:60815445-60815464 | None:intergenic | 30.0% |
| ATGAAACTTATCTCCATCAT+TGG | - | chr4_1:60815444-60815463 | Msa0561300:CDS | 30.0% | |
| TGAAACTTATCTCCATCATT+GGG | - | chr4_1:60815445-60815464 | Msa0561300:CDS | 30.0% | |
| AATACTCTTGGACAATACTT+TGG | - | chr4_1:60815581-60815600 | Msa0561300:intron | 30.0% | |
| ATGAATATGGAAGGTCTATA+AGG | - | chr4_1:60815798-60815817 | Msa0561300:intron | 30.0% | |
| TCTATAAGGCCAGATTATAA+AGG | - | chr4_1:60815812-60815831 | Msa0561300:intron | 30.0% | |
| TTACTGTGTATCTTAGATAG+AGG | + | chr4_1:60815907-60815926 | None:intergenic | 30.0% | |
| ATATAACACTAGTCCATTGT+TGG | - | chr4_1:60816284-60816303 | Msa0561300:intron | 30.0% | |
| TATAACACTAGTCCATTGTT+GGG | - | chr4_1:60816285-60816304 | Msa0561300:intron | 30.0% | |
| !! | TGCTTGTTTTCATTGTATAC+TGG | - | chr4_1:60816725-60816744 | Msa0561300:CDS | 30.0% |
| TAGAAAAAGCAAAATTAGGG+AGG | - | chr4_1:60817164-60817183 | Msa0561300:CDS | 30.0% | |
| ! | CAAAGAGAAGTGTAAGTATT+CGG | + | chr4_1:60817377-60817396 | None:intergenic | 30.0% |
| CATTGCAATTGTAATGCAAA+AGG | - | chr4_1:60817443-60817462 | Msa0561300:five_prime_UTR | 30.0% | |
| AAGGGCAACAATATATACTG+TGG | + | chr4_1:60814944-60814963 | None:intergenic | 35.0% | |
| ACAGAATTTGCAAATTGCAC+AGG | + | chr4_1:60814982-60815001 | None:intergenic | 35.0% | |
| GCCACTGAAAATACAAACTT+AGG | + | chr4_1:60815206-60815225 | None:intergenic | 35.0% | |
| GCAATACTTCTGCTATTGTT+TGG | - | chr4_1:60815224-60815243 | Msa0561300:three_prime_UTR | 35.0% | |
| ! | TAAGTTTCATGGAGAGGTAT+AGG | + | chr4_1:60815434-60815453 | None:intergenic | 35.0% |
| GAAACTTATCTCCATCATTG+GGG | - | chr4_1:60815446-60815465 | Msa0561300:CDS | 35.0% | |
| GTTCTGATATTGTGAAAGTG+AGG | - | chr4_1:60815537-60815556 | Msa0561300:CDS | 35.0% | |
| ATATGTCAGGGAAATACTCT+TGG | - | chr4_1:60815569-60815588 | Msa0561300:CDS | 35.0% | |
| TTACCTATCTCTATACCGAA+AGG | + | chr4_1:60815650-60815669 | None:intergenic | 35.0% | |
| ATTAAGCACCCATTTATCCT+CGG | + | chr4_1:60815696-60815715 | None:intergenic | 35.0% | |
| ! | GTGCGAGCTTTATAATGTTA+CGG | - | chr4_1:60815772-60815791 | Msa0561300:intron | 35.0% |
| AATGTTACGGTGGATGAATA+TGG | - | chr4_1:60815785-60815804 | Msa0561300:intron | 35.0% | |
| ATAAGGCCAGATTATAAAGG+AGG | - | chr4_1:60815815-60815834 | Msa0561300:intron | 35.0% | |
| AACCAACCTCCTTTATAATC+TGG | + | chr4_1:60815824-60815843 | None:intergenic | 35.0% | |
| !! | AAGTTGAAGGAAGGTTTTGA+GGG | - | chr4_1:60815869-60815888 | Msa0561300:intron | 35.0% |
| !! | ACACAGTAAAATGGGTTGAT+TGG | - | chr4_1:60815918-60815937 | Msa0561300:CDS | 35.0% |
| !! | CACAGTAAAATGGGTTGATT+GGG | - | chr4_1:60815919-60815938 | Msa0561300:CDS | 35.0% |
| GTCAATGCATCAATGAATGT+TGG | - | chr4_1:60816069-60816088 | Msa0561300:intron | 35.0% | |
| ! | AGATTTCAAGCTCGGTATTT+TGG | + | chr4_1:60816148-60816167 | None:intergenic | 35.0% |
| AAATACCGAGCTTGAAATCT+AGG | - | chr4_1:60816148-60816167 | Msa0561300:intron | 35.0% | |
| CTCATTATGATACCCAACAA+TGG | + | chr4_1:60816300-60816319 | None:intergenic | 35.0% | |
| ATGGCTGTGTTAATGTAAAG+AGG | - | chr4_1:60816389-60816408 | Msa0561300:CDS | 35.0% | |
| GGAAATTACCTGTCCATATA+GGG | + | chr4_1:60816491-60816510 | None:intergenic | 35.0% | |
| TGGAAATTACCTGTCCATAT+AGG | + | chr4_1:60816492-60816511 | None:intergenic | 35.0% | |
| GTGTGAATAATTAGCAGTTG+AGG | - | chr4_1:60816694-60816713 | Msa0561300:CDS | 35.0% | |
| AATTAGCAGTTGAGGACTAT+CGG | - | chr4_1:60816702-60816721 | Msa0561300:CDS | 35.0% | |
| TGTGTTTCATGATTTCAGGA+TGG | - | chr4_1:60816803-60816822 | Msa0561300:CDS | 35.0% | |
| GTGTTTCATGATTTCAGGAT+GGG | - | chr4_1:60816804-60816823 | Msa0561300:CDS | 35.0% | |
| !! | TCAACTTGTTATCCTAAACC+AGG | - | chr4_1:60816905-60816924 | Msa0561300:CDS | 35.0% |
| TTCACCATCAATTATCGTGA+CGG | + | chr4_1:60816933-60816952 | None:intergenic | 35.0% | |
| ! | AATGGGGCTTTTCTACATAT+TGG | - | chr4_1:60817003-60817022 | Msa0561300:CDS | 35.0% |
| TTAGGGAGGAAAATTAGTGA+CGG | - | chr4_1:60817178-60817197 | Msa0561300:CDS | 35.0% | |
| ATCTAGTGACGAAATTAGAG+AGG | - | chr4_1:60817238-60817257 | Msa0561300:five_prime_UTR | 35.0% | |
| TCTAGTGACGAAATTAGAGA+GGG | - | chr4_1:60817239-60817258 | Msa0561300:five_prime_UTR | 35.0% | |
| !! | TAGTGAGGGAATTTTAGAGA+GGG | + | chr4_1:60817277-60817296 | None:intergenic | 35.0% |
| TTGAGTGCAATATGACCTCT+TGG | + | chr4_1:60815374-60815393 | None:intergenic | 40.0% | |
| !! | GCTGAAGTAGTTGATGAAGA+TGG | - | chr4_1:60815404-60815423 | Msa0561300:CDS | 40.0% |
| TGGAGATAAGTTTCATGGAG+AGG | + | chr4_1:60815440-60815459 | None:intergenic | 40.0% | |
| GTCACACACACAAGAAATGA+TGG | - | chr4_1:60815497-60815516 | Msa0561300:CDS | 40.0% | |
| ACACAAGAAATGATGGCCAA+AGG | - | chr4_1:60815504-60815523 | Msa0561300:CDS | 40.0% | |
| !! | CAGAACTTTGAAGCATCCTT+TGG | + | chr4_1:60815523-60815542 | None:intergenic | 40.0% |
| ATTGTGAAAGTGAGGAACAG+TGG | - | chr4_1:60815545-60815564 | Msa0561300:CDS | 40.0% | |
| CTTGGACAATACTTTGGCAT+TGG | - | chr4_1:60815587-60815606 | Msa0561300:intron | 40.0% | |
| AGGAACAGCAACAGATATTC+CGG | - | chr4_1:60815622-60815641 | Msa0561300:intron | 40.0% | |
| ACAGATATTCCGGAACCTTT+CGG | - | chr4_1:60815632-60815651 | Msa0561300:intron | 40.0% | |
| ATCTCTATACCGAAAGGTTC+CGG | + | chr4_1:60815644-60815663 | None:intergenic | 40.0% | |
| GAACCTTTCGGTATAGAGAT+AGG | - | chr4_1:60815644-60815663 | Msa0561300:intron | 40.0% | |
| ! | CGAGCTTTATAATGTTACGG+TGG | - | chr4_1:60815775-60815794 | Msa0561300:intron | 40.0% |
| TTACGGTGGATGAATATGGA+AGG | - | chr4_1:60815789-60815808 | Msa0561300:intron | 40.0% | |
| ! | TTGTACACAGTGCAAGTTGA+AGG | - | chr4_1:60815856-60815875 | Msa0561300:intron | 40.0% |
| !! | CAAGTTGAAGGAAGGTTTTG+AGG | - | chr4_1:60815868-60815887 | Msa0561300:intron | 40.0% |
| CTTAGATAGAGGCTTCTCTT+TGG | + | chr4_1:60815896-60815915 | None:intergenic | 40.0% | |
| GAACTCTGATCATGATTGCA+AGG | - | chr4_1:60816021-60816040 | Msa0561300:CDS | 40.0% | |
| ACAGTCCTAGATTTCAAGCT+CGG | + | chr4_1:60816156-60816175 | None:intergenic | 40.0% | |
| CAGACTGTTGGATCAAAGAT+CGG | + | chr4_1:60816179-60816198 | None:intergenic | 40.0% | |
| ACAAGTCTCCCATTTCAAAC+TGG | - | chr4_1:60816412-60816431 | Msa0561300:CDS | 40.0% | |
| ! | CATAGCCACCAGTTTGAAAT+GGG | + | chr4_1:60816423-60816442 | None:intergenic | 40.0% |
| ACATAGCCACCAGTTTGAAA+TGG | + | chr4_1:60816424-60816443 | None:intergenic | 40.0% | |
| AATTACCTGTCCATATAGGG+TGG | + | chr4_1:60816488-60816507 | None:intergenic | 40.0% | |
| AGATGTATATGAGTCGGACA+CGG | - | chr4_1:60816573-60816592 | Msa0561300:CDS | 40.0% | |
| TTTCATGATTTCAGGATGGG+AGG | - | chr4_1:60816807-60816826 | Msa0561300:CDS | 40.0% | |
| TTCATGATTTCAGGATGGGA+GGG | - | chr4_1:60816808-60816827 | Msa0561300:CDS | 40.0% | |
| TGTTCTTCCATACCACGTTA+TGG | - | chr4_1:60816836-60816855 | Msa0561300:CDS | 40.0% | |
| AATGAGACAGGCTACATTGT+AGG | - | chr4_1:60816878-60816897 | Msa0561300:CDS | 40.0% | |
| AACAATAGCCAAGAACACAC+TGG | - | chr4_1:60816977-60816996 | Msa0561300:CDS | 40.0% | |
| CAAGAACACACTGGAGTAAT+GGG | - | chr4_1:60816986-60817005 | Msa0561300:CDS | 40.0% | |
| AAGAACACACTGGAGTAATG+GGG | - | chr4_1:60816987-60817006 | Msa0561300:CDS | 40.0% | |
| !! | GAATGTCTGAGTTGATGGTA+TGG | + | chr4_1:60817043-60817062 | None:intergenic | 40.0% |
| ! | GAGTAGAATGTCTGAGTTGA+TGG | + | chr4_1:60817048-60817067 | None:intergenic | 40.0% |
| ! | TATAACTGGCGTGTCATTGA+TGG | - | chr4_1:60817130-60817149 | Msa0561300:CDS | 40.0% |
| TTACGACGAGGAAATTTGTG+AGG | + | chr4_1:60817217-60817236 | None:intergenic | 40.0% | |
| !! | GTAGTGAGGGAATTTTAGAG+AGG | + | chr4_1:60817278-60817297 | None:intergenic | 40.0% |
| ATTGCAATGAAGCAGCTACA+TGG | + | chr4_1:60817432-60817451 | None:intergenic | 40.0% | |
| ! | TTGTCCCCGAAATTCGAGTT+AGG | - | chr4_1:60815305-60815324 | Msa0561300:CDS | 45.0% |
| AGGTCCTAACTCGAATTTCG+GGG | + | chr4_1:60815312-60815331 | None:intergenic | 45.0% | |
| CAGGTCCTAACTCGAATTTC+GGG | + | chr4_1:60815313-60815332 | None:intergenic | 45.0% | |
| CCAGGTCCTAACTCGAATTT+CGG | + | chr4_1:60815314-60815333 | None:intergenic | 45.0% | |
| ATCTTGCAACACCCCAATGA+TGG | + | chr4_1:60815460-60815479 | None:intergenic | 45.0% | |
| AGGAACAGTGGCATATGTCA+GGG | - | chr4_1:60815557-60815576 | Msa0561300:CDS | 45.0% | |
| ! | TGTTGCTGTTCCTCGTGTTT+CGG | + | chr4_1:60815615-60815634 | None:intergenic | 45.0% |
| AGAGATAGGTAATCCTGCAG+AGG | - | chr4_1:60815658-60815677 | Msa0561300:intron | 45.0% | |
| AATCCTGCAGAGGTTTCAGA+AGG | - | chr4_1:60815668-60815687 | Msa0561300:intron | 45.0% | |
| ATCCTGCAGAGGTTTCAGAA+GGG | - | chr4_1:60815669-60815688 | Msa0561300:intron | 45.0% | |
| AGAAGGGTCCGAGGATAAAT+GGG | - | chr4_1:60815685-60815704 | Msa0561300:intron | 45.0% | |
| GTTCATGCCATTGATACACG+TGG | - | chr4_1:60815716-60815735 | Msa0561300:intron | 45.0% | |
| GGCCAGATTATAAAGGAGGT+TGG | - | chr4_1:60815819-60815838 | Msa0561300:intron | 45.0% | |
| ! | ACACAGTGCAAGTTGAAGGA+AGG | - | chr4_1:60815860-60815879 | Msa0561300:intron | 45.0% |
| GGGTATCATAATGAGCGACA+TGG | - | chr4_1:60816305-60816324 | Msa0561300:intron | 45.0% | |
| ATCTTGCAGCACAAACCACA+AGG | - | chr4_1:60816360-60816379 | Msa0561300:intron | 45.0% | |
| ACAAACCACAAGGAGCGAAA+TGG | - | chr4_1:60816370-60816389 | Msa0561300:intron | 45.0% | |
| AGTCTCCCATTTCAAACTGG+TGG | - | chr4_1:60816415-60816434 | Msa0561300:CDS | 45.0% | |
| ACTGGTGGCTATGTGATCTA+TGG | - | chr4_1:60816430-60816449 | Msa0561300:CDS | 45.0% | |
| CATCAGCATTCAGGTGGAAT+TGG | - | chr4_1:60816460-60816479 | Msa0561300:CDS | 45.0% | |
| GGAATTGGATCCACCCTATA+TGG | - | chr4_1:60816475-60816494 | Msa0561300:CDS | 45.0% | |
| TCCATACCACGTTATGGAGA+TGG | - | chr4_1:60816842-60816861 | Msa0561300:CDS | 45.0% | |
| TCCATCTCCATAACGTGGTA+TGG | + | chr4_1:60816846-60816865 | None:intergenic | 45.0% | |
| TCGTTTCCATCTCCATAACG+TGG | + | chr4_1:60816851-60816870 | None:intergenic | 45.0% | |
| TATGGAGATGGAAACGAAGC+AGG | - | chr4_1:60816854-60816873 | Msa0561300:CDS | 45.0% | |
| AACGAAGCAGGAAATGAGAC+AGG | - | chr4_1:60816866-60816885 | Msa0561300:CDS | 45.0% | |
| ! | TCAATTATCGTGACGGAACC+TGG | + | chr4_1:60816926-60816945 | None:intergenic | 45.0% |
| GGTTCCGTCACGATAATTGA+TGG | - | chr4_1:60816926-60816945 | Msa0561300:CDS | 45.0% | |
| CCATTACTCCAGTGTGTTCT+TGG | + | chr4_1:60816988-60817007 | None:intergenic | 45.0% | |
| CCAAGAACACACTGGAGTAA+TGG | - | chr4_1:60816985-60817004 | Msa0561300:CDS | 45.0% | |
| ! | CGTCACTAGATTTTACGACG+AGG | + | chr4_1:60817229-60817248 | None:intergenic | 45.0% |
| ! | CCGAAATTCGAGTTAGGACC+TGG | - | chr4_1:60815311-60815330 | Msa0561300:CDS | 50.0% |
| GAGGAACAGTGGCATATGTC+AGG | - | chr4_1:60815556-60815575 | Msa0561300:CDS | 50.0% | |
| CAGAAGGGTCCGAGGATAAA+TGG | - | chr4_1:60815684-60815703 | Msa0561300:intron | 50.0% | |
| GTGGCGTGGAGGATAAGTTA+GGG | - | chr4_1:60815735-60815754 | Msa0561300:intron | 50.0% | |
| ACGCAATCAGCACAGACTGT+TGG | + | chr4_1:60816191-60816210 | None:intergenic | 50.0% | |
| TGTAGAGTCTCTCGACTGCT+AGG | - | chr4_1:60816214-60816233 | Msa0561300:intron | 50.0% | |
| ! | GGTGTTGCACATCAGCATTC+AGG | - | chr4_1:60816451-60816470 | Msa0561300:CDS | 50.0% |
| GTTGCACATCAGCATTCAGG+TGG | - | chr4_1:60816454-60816473 | Msa0561300:CDS | 50.0% | |
| TGGATCCACCCTATATGGAC+AGG | - | chr4_1:60816480-60816499 | Msa0561300:CDS | 50.0% | |
| ! | ATCGTGACGGAACCTGGTTT+AGG | + | chr4_1:60816920-60816939 | None:intergenic | 50.0% |
| ! | GGCATTGGATCCGAAACACG+AGG | - | chr4_1:60815602-60815621 | Msa0561300:intron | 55.0% |
| !! | GACCCTTCTGAAACCTCTGC+AGG | + | chr4_1:60815674-60815693 | None:intergenic | 55.0% |
| AGAGGTTTCAGAAGGGTCCG+AGG | - | chr4_1:60815676-60815695 | Msa0561300:intron | 55.0% | |
| TGCCATTGATACACGTGGCG+TGG | - | chr4_1:60815721-60815740 | Msa0561300:intron | 55.0% | |
| CTCCACGCCACGTGTATCAA+TGG | + | chr4_1:60815726-60815745 | None:intergenic | 55.0% | |
| CATTGATACACGTGGCGTGG+AGG | - | chr4_1:60815724-60815743 | Msa0561300:intron | 55.0% | |
| CGTGGCGTGGAGGATAAGTT+AGG | - | chr4_1:60815734-60815753 | Msa0561300:intron | 55.0% | |
| CACAGCCATTTCGCTCCTTG+TGG | + | chr4_1:60816378-60816397 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 60814941 | 60817478 | 60814941 | ID=Msa0561300;Name=Msa0561300 |
| chr4_1 | mRNA | 60814941 | 60817478 | 60814941 | ID=Msa0561300-mRNA-1;Parent=Msa0561300;Name=Msa0561300-mRNA-1;_AED=0.02;_eAED=0.02;_QI=250|1|1|1|0.66|0.5|4|271|434 |
| chr4_1 | exon | 60814941 | 60815015 | 60814941 | ID=Msa0561300-mRNA-1:exon:19011;Parent=Msa0561300-mRNA-1 |
| chr4_1 | exon | 60815109 | 60815598 | 60815109 | ID=Msa0561300-mRNA-1:exon:19010;Parent=Msa0561300-mRNA-1 |
| chr4_1 | exon | 60815918 | 60816076 | 60815918 | ID=Msa0561300-mRNA-1:exon:19009;Parent=Msa0561300-mRNA-1 |
| chr4_1 | exon | 60816377 | 60817478 | 60816377 | ID=Msa0561300-mRNA-1:exon:19008;Parent=Msa0561300-mRNA-1 |
| chr4_1 | five_prime_UTR | 60817229 | 60817478 | 60817229 | ID=Msa0561300-mRNA-1:five_prime_utr;Parent=Msa0561300-mRNA-1 |
| chr4_1 | CDS | 60816377 | 60817228 | 60816377 | ID=Msa0561300-mRNA-1:cds;Parent=Msa0561300-mRNA-1 |
| chr4_1 | CDS | 60815918 | 60816076 | 60815918 | ID=Msa0561300-mRNA-1:cds;Parent=Msa0561300-mRNA-1 |
| chr4_1 | CDS | 60815305 | 60815598 | 60815305 | ID=Msa0561300-mRNA-1:cds;Parent=Msa0561300-mRNA-1 |
| chr4_1 | three_prime_UTR | 60815109 | 60815304 | 60815109 | ID=Msa0561300-mRNA-1:three_prime_utr;Parent=Msa0561300-mRNA-1 |
| chr4_1 | three_prime_UTR | 60814941 | 60815015 | 60814941 | ID=Msa0561300-mRNA-1:three_prime_utr;Parent=Msa0561300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
