AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0175240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0175240 MtrunA17_Chr1g0204131 97.838 370 8 0 12 381 259 628 0.0 751
Msa0175240 MtrunA17_Chr8g0391241 58.869 389 145 5 5 381 197 582 4.32e-157 454
Msa0175240 MtrunA17_Chr1g0204151 94.872 117 6 0 209 325 20 136 2.19e-76 233
Msa0175240 MtrunA17_Chr1g0204161 95.745 47 2 0 335 381 13 59 1.14e-24 95.5
Msa0175240 MtrunA17_Chr4g0067871 55.072 69 31 0 313 381 5 73 1.36e-18 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0175240 AT5G51820.1 87.027 370 48 0 12 381 254 623 0.0 679
Msa0175240 AT1G70730.1 59.686 382 140 3 14 381 204 585 4.41e-161 464
Msa0175240 AT1G70730.2 59.686 382 140 3 14 381 224 605 8.82e-161 464
Msa0175240 AT1G70730.3 59.686 382 140 3 14 381 281 662 4.85e-160 464
Msa0175240 AT1G23190.1 59.843 381 140 4 14 381 203 583 5.73e-156 451

Find 89 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAATACCTTTGGAAGATTT+TGG 0.116294 1_4:-61122433 Msa0175240:CDS
TAGATACTCTATCATCTTAT+TGG 0.171603 1_4:+61120865 None:intergenic
ATATTTAGCTTCTCTGTAAA+AGG 0.251377 1_4:-61119909 Msa0175240:three_prime_UTR
TTAACACTGTTCTTGAAGTA+TGG 0.261178 1_4:+61121869 None:intergenic
AACATTATGTATGCTGAAAA+TGG 0.287707 1_4:-61122284 Msa0175240:CDS
ATTGCCTTGAAACCGTTAAT+AGG 0.291661 1_4:-61120309 Msa0175240:intron
ATTTGCGGGGAAGAGAGTTT+TGG 0.344745 1_4:-61121528 Msa0175240:CDS
GATGCCATGCATGCAGTTGC+TGG 0.369833 1_4:-61122609 Msa0175240:CDS
CTGGGAATTTGTCAATTTGC+GGG 0.370284 1_4:-61121542 Msa0175240:CDS
GCTGAAAATGGACCTGATTT+CGG 0.370762 1_4:-61122272 Msa0175240:CDS
GTTGAACCTCCCTTTCTTTG+AGG 0.375439 1_4:-61121713 Msa0175240:intron
AATTTAAATATGCAGGTAGA+TGG 0.382586 1_4:-61120578 Msa0175240:intron
AATTTCAAATGGAATACCTT+TGG 0.393380 1_4:-61122443 Msa0175240:CDS
TATTAATCTCACGTTAGATT+AGG 0.401560 1_4:+61122394 None:intergenic
TTTGGGAATCTTATGGATGC+TGG 0.406165 1_4:-61121561 Msa0175240:CDS
TCCGTGAGAAAGACGGAATC+TGG 0.414017 1_4:-61121488 Msa0175240:intron
ATGTAAAATCATCTGCAAAC+TGG 0.416056 1_4:+61120700 None:intergenic
AGAAGATTGTACCTAAAATC+TGG 0.421191 1_4:+61122763 None:intergenic
GGGCGGACTATGCTCCAAAA+TGG 0.422417 1_4:+61120014 None:intergenic
CAATAACAAATAAACTGAAC+TGG 0.422800 1_4:+61122840 None:intergenic
ATGTAGGATTCAATTTCAAA+TGG 0.426656 1_4:-61122454 Msa0175240:intron
CCCATCTTTGTGGATAAACT+TGG 0.430041 1_4:-61122573 Msa0175240:CDS
CGCAACAAAGACACGAAACC+AGG 0.430719 1_4:-61121150 Msa0175240:CDS
AGCAAGCCCGGTGATAAGTA+TGG 0.431470 1_4:-61120824 Msa0175240:intron
ACAAAATATACCTCAAAGAA+AGG 0.431933 1_4:+61121703 None:intergenic
ACTTGATCTCAGGTAATGAT+AGG 0.432412 1_4:+61120070 None:intergenic
TATCATCTTATTGGCCCCTT+CGG 0.437478 1_4:+61120874 None:intergenic
TCATTACCTGAGATCAAGTT+CGG 0.451519 1_4:-61120066 Msa0175240:three_prime_UTR
TGATGTTGTAAAGGAACATT+GGG 0.455481 1_4:-61121106 Msa0175240:CDS
ATAACCTATTAACGGTTTCA+AGG 0.456835 1_4:+61120305 None:intergenic
ATACTTCAAGAACAGTGTTA+AGG 0.459497 1_4:-61121867 Msa0175240:intron
TCACTAGCACCTCCGAAATC+AGG 0.463402 1_4:+61122260 None:intergenic
TTACAGGGAACAGGTTCTGC+TGG 0.464686 1_4:-61120399 Msa0175240:intron
TTCCGTCTTTCTCACGGATG+TGG 0.466826 1_4:+61121493 None:intergenic
ACAGAGATCAATTTCTCCCC+TGG 0.468883 1_4:+61121132 None:intergenic
GCTGGGAATTTGTCAATTTG+CGG 0.469092 1_4:-61121543 Msa0175240:CDS
TTGGGAATCTTATGGATGCT+GGG 0.472034 1_4:-61121560 Msa0175240:CDS
CTCTGTATCTGATGTTGTAA+AGG 0.480141 1_4:-61121115 Msa0175240:CDS
AGGTCGTGTTTAGAAACATC+TGG 0.480847 1_4:+61120342 None:intergenic
CCAAGTTTATCCACAAAGAT+GGG 0.482008 1_4:+61122573 None:intergenic
ACCAAGTTTATCCACAAAGA+TGG 0.484051 1_4:+61122572 None:intergenic
TAATCAAAGGTCTTATTTCA+CGG 0.486109 1_4:-61122786 Msa0175240:CDS
AGAAAAGAAATTTCTACCAT+AGG 0.488825 1_4:+61121080 None:intergenic
TTACTAGGGCTGTATTAGCT+TGG 0.499141 1_4:-61121191 Msa0175240:intron
TAGGCGTAATGCACTCAACT+TGG 0.502028 1_4:+61120094 None:intergenic
CTGATGTTGTAAAGGAACAT+TGG 0.505332 1_4:-61121107 Msa0175240:CDS
TCTCACGTTAGATTAGGATC+AGG 0.510026 1_4:+61122400 None:intergenic
GAACTCTTTGAGCTTTGAAA+CGG 0.513418 1_4:+61120188 None:intergenic
TCAAAGCTCAAAGAGTTCAC+AGG 0.520238 1_4:-61120183 Msa0175240:CDS
AGCACCAGCAACTGCATGCA+TGG 0.520589 1_4:+61122605 None:intergenic
GACAAACCGAACTTGATCTC+AGG 0.527283 1_4:+61120060 None:intergenic
TGGTATCAAAACAAGGGGTC+CGG 0.530761 1_4:-61120550 Msa0175240:CDS
TATAGGAATGTGAATCCGAA+GGG 0.532495 1_4:-61120889 Msa0175240:intron
ACCAGATTCCGTCTTTCTCA+CGG 0.536879 1_4:+61121487 None:intergenic
CAAAATATACCTCAAAGAAA+GGG 0.540251 1_4:+61121704 None:intergenic
AAGGAACATTGGGCAACCTA+TGG 0.541470 1_4:-61121096 Msa0175240:CDS
TAACTTACCATACTTATCAC+CGG 0.545382 1_4:+61120817 None:intergenic
TGTCTGTGTAAGAGCAAGCC+CGG 0.563841 1_4:-61120836 Msa0175240:CDS
TTTATTGAACAGATATGCAA+AGG 0.567419 1_4:-61122315 Msa0175240:intron
GGATAAACTTGGTGCTACTC+CGG 0.568376 1_4:-61122562 Msa0175240:intron
CCTTGGATGCAGGTGCCCAC+TGG 0.570875 1_4:-61121594 Msa0175240:intron
CAAAGCTCAAAGAGTTCACA+GGG 0.577713 1_4:-61120182 Msa0175240:CDS
TCAAGGCAATTTGAGCGTCA+AGG 0.579209 1_4:+61120322 None:intergenic
AACTTACCATACTTATCACC+GGG 0.580691 1_4:+61120818 None:intergenic
GCAACAAAGACACGAAACCA+GGG 0.582127 1_4:-61121149 Msa0175240:CDS
ATATAGGAATGTGAATCCGA+AGG 0.600836 1_4:-61120890 Msa0175240:intron
CAACAAAGACACGAAACCAG+GGG 0.600910 1_4:-61121148 Msa0175240:CDS
GATTTCGGAGGTGCTAGTGA+TGG 0.609547 1_4:-61122257 Msa0175240:intron
GGATGCAGGTGCCCACTGGT+TGG 0.610506 1_4:-61121590 Msa0175240:intron
ATCTCAGGTAATGATAGGAT+AGG 0.613607 1_4:+61120075 None:intergenic
GGAAGTGTGGTATCAAAACA+AGG 0.613768 1_4:-61120557 Msa0175240:CDS
CTGGTTTCGTGTCTTTGTTG+CGG 0.618637 1_4:+61121151 None:intergenic
CAAGTTTATCCACAAAGATG+GGG 0.618671 1_4:+61122574 None:intergenic
TAAAATCATCTGCAAACTGG+AGG 0.620007 1_4:+61120703 None:intergenic
CCATGTCCAAAATCTTCCAA+AGG 0.626695 1_4:+61122427 None:intergenic
TATGCAGGTAGATGGAAGTG+TGG 0.631620 1_4:-61120570 Msa0175240:intron
AAGTTTATCCACAAAGATGG+GGG 0.633720 1_4:+61122575 None:intergenic
GACCACATCCGTGAGAAAGA+CGG 0.637403 1_4:-61121495 Msa0175240:CDS
AATATACCTCAAAGAAAGGG+AGG 0.641483 1_4:+61121707 None:intergenic
GCACGATCAATGCCGACGAG+TGG 0.650359 1_4:-61121760 Msa0175240:CDS
CTATCTAGAGCACCACTCGT+CGG 0.651595 1_4:+61121748 None:intergenic
TTATTTATTTAGTTACACAA+TGG 0.658888 1_4:+61119947 None:intergenic
ATAACCGCTACAGAGTCTGA+AGG 0.662514 1_4:+61121917 None:intergenic
TGGGAATTTGTCAATTTGCG+GGG 0.668271 1_4:-61121541 Msa0175240:CDS
AAGTGTGGTATCAAAACAAG+GGG 0.673050 1_4:-61120555 Msa0175240:CDS
AACTCCTTCAGACTCTGTAG+CGG 0.682045 1_4:-61121921 Msa0175240:CDS
GAAGTGTGGTATCAAAACAA+GGG 0.690476 1_4:-61120556 Msa0175240:CDS
ATAGGAATGTGAATCCGAAG+GGG 0.711243 1_4:-61120888 Msa0175240:intron
GAAAATGGACCTGATTTCGG+AGG 0.722419 1_4:-61122269 Msa0175240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATCTTGATTATTTATTTT+AGG - chr1_4:61120106-61120125 Msa0175240:three_prime_UTR 10.0%
!!! TTTATATGTATAATACTTTT+TGG - chr1_4:61121731-61121750 Msa0175240:CDS 10.0%
!!! TTTTTGACAAATTTAAATAT+AGG - chr1_4:61121841-61121860 Msa0175240:intron 10.0%
!!! TATAATTTTTTTGAAAGAAA+TGG + chr1_4:61122289-61122308 None:intergenic 10.0%
!!! TAAATATCATATTTTACATA+GGG + chr1_4:61122756-61122775 None:intergenic 10.0%
!!! ATAAATATCATATTTTACAT+AGG + chr1_4:61122757-61122776 None:intergenic 10.0%
!! ACTTTATATTATGTTGATAT+TGG - chr1_4:61120250-61120269 Msa0175240:intron 15.0%
!! AGTTTATACATACTATTAAT+AGG - chr1_4:61120908-61120927 Msa0175240:intron 15.0%
!!! TAATATTTTAGATGAAGTAA+TGG - chr1_4:61121108-61121127 Msa0175240:CDS 15.0%
!!! AACATTTGCTATTAAAAAAA+AGG + chr1_4:61121339-61121358 None:intergenic 15.0%
!! ATTATGATTTATATATCACT+CGG - chr1_4:61121401-61121420 Msa0175240:intron 15.0%
!! TTATTTATTTAGTTACACAA+TGG + chr1_4:61122803-61122822 None:intergenic 15.0%
!! CAAATACATAAAAATCATCA+AGG + chr1_4:61120750-61120769 None:intergenic 20.0%
!!! ACTTCATCTAAAATATTAAG+CGG + chr1_4:61121106-61121125 None:intergenic 20.0%
!!! GCTATTAAAAAAAAGGTATA+CGG + chr1_4:61121332-61121351 None:intergenic 20.0%
!! TACAATTACTAGTTATGTTA+CGG - chr1_4:61121361-61121380 Msa0175240:intron 20.0%
!!! TATTTAGTTTAGTTTTGCTT+TGG - chr1_4:61121762-61121781 Msa0175240:CDS 20.0%
!!! ATATTTTTCTTTTCAACTCA+AGG - chr1_4:61122117-61122136 Msa0175240:intron 20.0%
!!! TTAAATCAGATTTTGAACTA+CGG + chr1_4:61122151-61122170 None:intergenic 20.0%
!!! CTGATTTAATTTAAATATGC+AGG - chr1_4:61122162-61122181 Msa0175240:intron 20.0%
!! TATATTACTATACGTTATCT+TGG + chr1_4:61122478-61122497 None:intergenic 20.0%
! CAATAACAAATAAACTGAAC+TGG + chr1_4:61119910-61119929 None:intergenic 25.0%
!!! TTTGATTTTCAGCTAATCAA+AGG - chr1_4:61119948-61119967 Msa0175240:three_prime_UTR 25.0%
!!! TAATCAAAGGTCTTATTTCA+CGG - chr1_4:61119961-61119980 Msa0175240:three_prime_UTR 25.0%
!!! TGATTATTGCAAATTTTGAC+TGG - chr1_4:61120014-61120033 Msa0175240:three_prime_UTR 25.0%
!!! GATTATTGCAAATTTTGACT+GGG - chr1_4:61120015-61120034 Msa0175240:three_prime_UTR 25.0%
! ATGTAGGATTCAATTTCAAA+TGG - chr1_4:61120293-61120312 Msa0175240:intron 25.0%
! AATTTCAAATGGAATACCTT+TGG - chr1_4:61120304-61120323 Msa0175240:intron 25.0%
! TATTAATCTCACGTTAGATT+AGG + chr1_4:61120356-61120375 None:intergenic 25.0%
! TTTATTGAACAGATATGCAA+AGG - chr1_4:61120432-61120451 Msa0175240:intron 25.0%
! AACATTATGTATGCTGAAAA+TGG - chr1_4:61120463-61120482 Msa0175240:intron 25.0%
!!! CAACTACATCTTCTAAAATA+TGG + chr1_4:61120685-61120704 None:intergenic 25.0%
!! ATGTATTTGAACTTTTGTTC+AGG - chr1_4:61120761-61120780 Msa0175240:intron 25.0%
! CAAAATATACCTCAAAGAAA+GGG + chr1_4:61121046-61121065 None:intergenic 25.0%
! ACAAAATATACCTCAAAGAA+AGG + chr1_4:61121047-61121066 None:intergenic 25.0%
!! CTTCATCTAAAATATTAAGC+GGG + chr1_4:61121105-61121124 None:intergenic 25.0%
!!! GAAATTTTTTGGGAATCTTA+TGG - chr1_4:61121179-61121198 Msa0175240:CDS 25.0%
! ACAATTACTAGTTATGTTAC+GGG - chr1_4:61121362-61121381 Msa0175240:intron 25.0%
! TTGTTTGTTTCCAATTACTA+GGG - chr1_4:61121542-61121561 Msa0175240:CDS 25.0%
! AGAAAAGAAATTTCTACCAT+AGG + chr1_4:61121670-61121689 None:intergenic 25.0%
! ATTTCTTAATACCATAAGCT+AGG - chr1_4:61121786-61121805 Msa0175240:intron 25.0%
! TAGATACTCTATCATCTTAT+TGG + chr1_4:61121885-61121904 None:intergenic 25.0%
! AAGAAAAATATGAACGTGAT+AGG + chr1_4:61122108-61122127 None:intergenic 25.0%
! AATTTAAATATGCAGGTAGA+TGG - chr1_4:61122169-61122188 Msa0175240:intron 25.0%
! CACGAAAAATAACCTATTAA+CGG + chr1_4:61122453-61122472 None:intergenic 25.0%
!!! TTTTGGTTGTTTTACCATTT+TGG - chr1_4:61122719-61122738 Msa0175240:intron 25.0%
!! ATATCATATTTTACATAGGG+CGG + chr1_4:61122753-61122772 None:intergenic 25.0%
!! ATATTTAGCTTCTCTGTAAA+AGG - chr1_4:61122838-61122857 Msa0175240:CDS 25.0%
AGAAGATTGTACCTAAAATC+TGG + chr1_4:61119987-61120006 None:intergenic 30.0%
! ATCACTTTGTTTAAACAGAG+TGG - chr1_4:61120060-61120079 Msa0175240:three_prime_UTR 30.0%
! TCACTTTGTTTAAACAGAGT+GGG - chr1_4:61120061-61120080 Msa0175240:three_prime_UTR 30.0%
TGAAACTAATCATCAGTTCA+GGG + chr1_4:61120586-61120605 None:intergenic 30.0%
ATGAAACTAATCATCAGTTC+AGG + chr1_4:61120587-61120606 None:intergenic 30.0%
ATCATCAAGGAAACACATAA+AGG + chr1_4:61120737-61120756 None:intergenic 30.0%
! GGGGATAGAAATATGATTTT+AGG - chr1_4:61120788-61120807 Msa0175240:intron 30.0%
TTAACACTGTTCTTGAAGTA+TGG + chr1_4:61120881-61120900 None:intergenic 30.0%
ATACTTCAAGAACAGTGTTA+AGG - chr1_4:61120880-61120899 Msa0175240:CDS 30.0%
!! TTATGCTTTGAAGAAACATG+TGG + chr1_4:61121293-61121312 None:intergenic 30.0%
GTTGTTTGTTTCCAATTACT+AGG - chr1_4:61121541-61121560 Msa0175240:CDS 30.0%
TGATGTTGTAAAGGAACATT+GGG - chr1_4:61121641-61121660 Msa0175240:intron 30.0%
TATACACTTAACCTAGCTTA+TGG + chr1_4:61121800-61121819 None:intergenic 30.0%
TAACTTACCATACTTATCAC+CGG + chr1_4:61121933-61121952 None:intergenic 30.0%
ATCATACTTCAAATATGCTC+AGG + chr1_4:61121998-61122017 None:intergenic 30.0%
TATGATGAGTATTCTTCTAC+AGG - chr1_4:61122012-61122031 Msa0175240:intron 30.0%
ATGTAAAATCATCTGCAAAC+TGG + chr1_4:61122050-61122069 None:intergenic 30.0%
!!! TGTACGATGTTTTGTTTTAC+AGG - chr1_4:61122332-61122351 Msa0175240:intron 30.0%
!!! GTACGATGTTTTGTTTTACA+GGG - chr1_4:61122333-61122352 Msa0175240:intron 30.0%
ATAACCTATTAACGGTTTCA+AGG + chr1_4:61122445-61122464 None:intergenic 30.0%
!!! CATTTTTAAGTGATGACTGT+AGG + chr1_4:61122600-61122619 None:intergenic 30.0%
!! TACATTTTGATGAGTGATTG+TGG + chr1_4:61122631-61122650 None:intergenic 30.0%
!!! GGTTTGTCATTTTTCAGTTT+TGG - chr1_4:61122702-61122721 Msa0175240:intron 30.0%
! TTATTTCACGGCCAGATTTT+AGG - chr1_4:61119973-61119992 Msa0175240:three_prime_UTR 35.0%
! CACTTTGTTTAAACAGAGTG+GGG - chr1_4:61120062-61120081 Msa0175240:three_prime_UTR 35.0%
AAGTTTATCCACAAAGATGG+GGG + chr1_4:61120175-61120194 None:intergenic 35.0%
CAAGTTTATCCACAAAGATG+GGG + chr1_4:61120176-61120195 None:intergenic 35.0%
CCAAGTTTATCCACAAAGAT+GGG + chr1_4:61120177-61120196 None:intergenic 35.0%
ACCAAGTTTATCCACAAAGA+TGG + chr1_4:61120178-61120197 None:intergenic 35.0%
ACTCCCTAATTGAGTTAAAG+GGG + chr1_4:61120221-61120240 None:intergenic 35.0%
CACTCCCTAATTGAGTTAAA+GGG + chr1_4:61120222-61120241 None:intergenic 35.0%
TGATGTCAAGTATGCAATGT+AGG - chr1_4:61120277-61120296 Msa0175240:intron 35.0%
!! GGAATACCTTTGGAAGATTT+TGG - chr1_4:61120314-61120333 Msa0175240:CDS 35.0%
GAAACTAATCATCAGTTCAG+GGG + chr1_4:61120585-61120604 None:intergenic 35.0%
! TTGAACTTTTGTTCAGGTGA+CGG - chr1_4:61120767-61120786 Msa0175240:intron 35.0%
TTGTTCTGTATTGCAATTGC+AGG - chr1_4:61120959-61120978 Msa0175240:intron 35.0%
TGTTCTGTATTGCAATTGCA+GGG - chr1_4:61120960-61120979 Msa0175240:intron 35.0%
AATATACCTCAAAGAAAGGG+AGG + chr1_4:61121043-61121062 None:intergenic 35.0%
AAATGACAAAAGACGAACCT+TGG - chr1_4:61121136-61121155 Msa0175240:CDS 35.0%
CCAAAAAATTTCCAACCAGT+GGG + chr1_4:61121171-61121190 None:intergenic 35.0%
!!! CCACTGGTTGGAAATTTTTT+GGG - chr1_4:61121169-61121188 Msa0175240:CDS 35.0%
AAGGTATACGGAAACACAAT+AGG + chr1_4:61121320-61121339 None:intergenic 35.0%
ATTACTAGTTATGTTACGGG+TGG - chr1_4:61121365-61121384 Msa0175240:intron 35.0%
TTACTAGTTATGTTACGGGT+GGG - chr1_4:61121366-61121385 Msa0175240:intron 35.0%
GTTCACAAAACTTATGCTTG+TGG + chr1_4:61121489-61121508 None:intergenic 35.0%
CTCTGTATCTGATGTTGTAA+AGG - chr1_4:61121632-61121651 Msa0175240:intron 35.0%
CTGATGTTGTAAAGGAACAT+TGG - chr1_4:61121640-61121659 Msa0175240:intron 35.0%
! CTTTTCTAGATATGACTACG+AGG - chr1_4:61121683-61121702 Msa0175240:intron 35.0%
ATATAGGAATGTGAATCCGA+AGG - chr1_4:61121857-61121876 Msa0175240:intron 35.0%
TATAGGAATGTGAATCCGAA+GGG - chr1_4:61121858-61121877 Msa0175240:intron 35.0%
AACTTACCATACTTATCACC+GGG + chr1_4:61121932-61121951 None:intergenic 35.0%
TAAAATCATCTGCAAACTGG+AGG + chr1_4:61122047-61122066 None:intergenic 35.0%
GAAGTGTGGTATCAAAACAA+GGG - chr1_4:61122191-61122210 Msa0175240:intron 35.0%
AAGTGTGGTATCAAAACAAG+GGG - chr1_4:61122192-61122211 Msa0175240:intron 35.0%
AACCATCCGTAAAAACAAAC+CGG + chr1_4:61122219-61122238 None:intergenic 35.0%
!!! TTGTTTTTACGGATGGTTCA+AGG - chr1_4:61122221-61122240 Msa0175240:intron 35.0%
!!! TGTTTTGTTTTACAGGGAAC+AGG - chr1_4:61122339-61122358 Msa0175240:intron 35.0%
ATTGCCTTGAAACCGTTAAT+AGG - chr1_4:61122438-61122457 Msa0175240:CDS 35.0%
!! GAACTCTTTGAGCTTTGAAA+CGG + chr1_4:61122562-61122581 None:intergenic 35.0%
ATCTCAGGTAATGATAGGAT+AGG + chr1_4:61122675-61122694 None:intergenic 35.0%
ACTTGATCTCAGGTAATGAT+AGG + chr1_4:61122680-61122699 None:intergenic 35.0%
TCATTACCTGAGATCAAGTT+CGG - chr1_4:61122681-61122700 Msa0175240:intron 35.0%
CCCATCTTTGTGGATAAACT+TGG - chr1_4:61120174-61120193 Msa0175240:CDS 40.0%
TCTCCCCCTTTAACTCAATT+AGG - chr1_4:61120214-61120233 Msa0175240:intron 40.0%
CTCCCCCTTTAACTCAATTA+GGG - chr1_4:61120215-61120234 Msa0175240:intron 40.0%
CTCCCTAATTGAGTTAAAGG+GGG + chr1_4:61120220-61120239 None:intergenic 40.0%
CCACTCCCTAATTGAGTTAA+AGG + chr1_4:61120223-61120242 None:intergenic 40.0%
CCTTTAACTCAATTAGGGAG+TGG - chr1_4:61120220-61120239 Msa0175240:intron 40.0%
CCATGTCCAAAATCTTCCAA+AGG + chr1_4:61120323-61120342 None:intergenic 40.0%
!! CCTTTGGAAGATTTTGGACA+TGG - chr1_4:61120320-61120339 Msa0175240:CDS 40.0%
TCTCACGTTAGATTAGGATC+AGG + chr1_4:61120350-61120369 None:intergenic 40.0%
GCTGAAAATGGACCTGATTT+CGG - chr1_4:61120475-61120494 Msa0175240:intron 40.0%
AAACCAAAGATGTGCAAGCT+GGG + chr1_4:61120529-61120548 None:intergenic 40.0%
TAAACCAAAGATGTGCAAGC+TGG + chr1_4:61120530-61120549 None:intergenic 40.0%
! TGAACTTTTGTTCAGGTGAC+GGG - chr1_4:61120768-61120787 Msa0175240:intron 40.0%
! TGGAATCGCTTCTTTTGCAT+TGG + chr1_4:61120861-61120880 None:intergenic 40.0%
!!! CCCACTGGTTGGAAATTTTT+TGG - chr1_4:61121168-61121187 Msa0175240:CDS 40.0%
CCCAAAAAATTTCCAACCAG+TGG + chr1_4:61121172-61121191 None:intergenic 40.0%
TTTGGGAATCTTATGGATGC+TGG - chr1_4:61121186-61121205 Msa0175240:CDS 40.0%
TTGGGAATCTTATGGATGCT+GGG - chr1_4:61121187-61121206 Msa0175240:CDS 40.0%
GCTGGGAATTTGTCAATTTG+CGG - chr1_4:61121204-61121223 Msa0175240:intron 40.0%
CTGGGAATTTGTCAATTTGC+GGG - chr1_4:61121205-61121224 Msa0175240:intron 40.0%
TGGGAATTTGTCAATTTGCG+GGG - chr1_4:61121206-61121225 Msa0175240:intron 40.0%
TACTAGTTATGTTACGGGTG+GGG - chr1_4:61121367-61121386 Msa0175240:intron 40.0%
ACAACCTTGTAAAGGAGATG+AGG - chr1_4:61121424-61121443 Msa0175240:intron 40.0%
GCTAATACAGCCCTAGTAAT+TGG + chr1_4:61121555-61121574 None:intergenic 40.0%
TTACTAGGGCTGTATTAGCT+TGG - chr1_4:61121556-61121575 Msa0175240:CDS 40.0%
TCTAGATATGACTACGAGGT+TGG - chr1_4:61121687-61121706 Msa0175240:intron 40.0%
ATAGGAATGTGAATCCGAAG+GGG - chr1_4:61121859-61121878 Msa0175240:intron 40.0%
TATCATCTTATTGGCCCCTT+CGG + chr1_4:61121876-61121895 None:intergenic 40.0%
TGCACATTGCAAGAACTTAC+AGG + chr1_4:61122081-61122100 None:intergenic 40.0%
! GGAAGTGTGGTATCAAAACA+AGG - chr1_4:61122190-61122209 Msa0175240:intron 40.0%
AGGTCGTGTTTAGAAACATC+TGG + chr1_4:61122408-61122427 None:intergenic 40.0%
TCAAAGCTCAAAGAGTTCAC+AGG - chr1_4:61122564-61122583 Msa0175240:CDS 40.0%
CAAAGCTCAAAGAGTTCACA+GGG - chr1_4:61122565-61122584 Msa0175240:CDS 40.0%
AGTGGGGCTATATCATCTCA+TGG - chr1_4:61120078-61120097 Msa0175240:three_prime_UTR 45.0%
GTGGGGCTATATCATCTCAT+GGG - chr1_4:61120079-61120098 Msa0175240:three_prime_UTR 45.0%
TTATGCAACCCCCATCTTTG+TGG - chr1_4:61120164-61120183 Msa0175240:CDS 45.0%
!! GGATAAACTTGGTGCTACTC+CGG - chr1_4:61120185-61120204 Msa0175240:CDS 45.0%
TTAAAGGGGGAGAACCATAC+CGG + chr1_4:61120207-61120226 None:intergenic 45.0%
GAAAATGGACCTGATTTCGG+AGG - chr1_4:61120478-61120497 Msa0175240:intron 45.0%
! GAACTTTTGTTCAGGTGACG+GGG - chr1_4:61120769-61120788 Msa0175240:intron 45.0%
AACTCCTTCAGACTCTGTAG+CGG - chr1_4:61120826-61120845 Msa0175240:CDS 45.0%
ATAACCGCTACAGAGTCTGA+AGG + chr1_4:61120833-61120852 None:intergenic 45.0%
GTTGAACCTCCCTTTCTTTG+AGG - chr1_4:61121034-61121053 Msa0175240:intron 45.0%
AAAAGACGAACCTTGGATGC+AGG - chr1_4:61121143-61121162 Msa0175240:CDS 45.0%
! ATTTGCGGGGAAGAGAGTTT+TGG - chr1_4:61121219-61121238 Msa0175240:intron 45.0%
ACCAGATTCCGTCTTTCTCA+CGG + chr1_4:61121263-61121282 None:intergenic 45.0%
TCACTCGGACAACCTTGTAA+AGG - chr1_4:61121416-61121435 Msa0175240:intron 45.0%
ACCTTGTAAAGGAGATGAGG+TGG - chr1_4:61121427-61121446 Msa0175240:intron 45.0%
ACCACCTCATCTCCTTTACA+AGG + chr1_4:61121431-61121450 None:intergenic 45.0%
CTGGTTTCGTGTCTTTGTTG+CGG + chr1_4:61121599-61121618 None:intergenic 45.0%
GCAACAAAGACACGAAACCA+GGG - chr1_4:61121598-61121617 Msa0175240:intron 45.0%
CAACAAAGACACGAAACCAG+GGG - chr1_4:61121599-61121618 Msa0175240:intron 45.0%
ACAGAGATCAATTTCTCCCC+TGG + chr1_4:61121618-61121637 None:intergenic 45.0%
AAGGAACATTGGGCAACCTA+TGG - chr1_4:61121651-61121670 Msa0175240:intron 45.0%
TATGCAGGTAGATGGAAGTG+TGG - chr1_4:61122177-61122196 Msa0175240:intron 45.0%
TGGTATCAAAACAAGGGGTC+CGG - chr1_4:61122197-61122216 Msa0175240:intron 45.0%
!!! AGGGGTCCGGTTTGTTTTTA+CGG - chr1_4:61122210-61122229 Msa0175240:intron 45.0%
!!! GTCCGGTTTGTTTTTACGGA+TGG - chr1_4:61122214-61122233 Msa0175240:intron 45.0%
TCAAGGCAATTTGAGCGTCA+AGG + chr1_4:61122428-61122447 None:intergenic 45.0%
TAGGCGTAATGCACTCAACT+TGG + chr1_4:61122656-61122675 None:intergenic 45.0%
GACAAACCGAACTTGATCTC+AGG + chr1_4:61122690-61122709 None:intergenic 45.0%
! GACTGGGTTGCATGTTGCTT+TGG - chr1_4:61120031-61120050 Msa0175240:three_prime_UTR 50.0%
!! AACTTGGTGCTACTCCGGTA+TGG - chr1_4:61120190-61120209 Msa0175240:CDS 50.0%
TCACTAGCACCTCCGAAATC+AGG + chr1_4:61120490-61120509 None:intergenic 50.0%
!! GATTTCGGAGGTGCTAGTGA+TGG - chr1_4:61120490-61120509 Msa0175240:intron 50.0%
CAACCCAGCTTGCACATCTT+TGG - chr1_4:61120523-61120542 Msa0175240:CDS 50.0%
! CTATCTAGAGCACCACTCGT+CGG + chr1_4:61121002-61121021 None:intergenic 50.0%
!!! GGGGAAGAGAGTTTTGGAAC+AGG - chr1_4:61121225-61121244 Msa0175240:intron 50.0%
GACCACATCCGTGAGAAAGA+CGG - chr1_4:61121252-61121271 Msa0175240:intron 50.0%
TTCCGTCTTTCTCACGGATG+TGG + chr1_4:61121257-61121276 None:intergenic 50.0%
TCCGTGAGAAAGACGGAATC+TGG - chr1_4:61121259-61121278 Msa0175240:intron 50.0%
CGCAACAAAGACACGAAACC+AGG - chr1_4:61121597-61121616 Msa0175240:intron 50.0%
TGTCTGTGTAAGAGCAAGCC+CGG - chr1_4:61121911-61121930 Msa0175240:CDS 50.0%
AGCAAGCCCGGTGATAAGTA+TGG - chr1_4:61121923-61121942 Msa0175240:CDS 50.0%
TTACAGGGAACAGGTTCTGC+TGG - chr1_4:61122348-61122367 Msa0175240:intron 50.0%
GATGCCATGCATGCAGTTGC+TGG - chr1_4:61120138-61120157 Msa0175240:exon 55.0%
AGCACCAGCAACTGCATGCA+TGG + chr1_4:61120145-61120164 None:intergenic 55.0%
!! GGGCGGACTATGCTCCAAAA+TGG + chr1_4:61122736-61122755 None:intergenic 55.0%
GCACGATCAATGCCGACGAG+TGG - chr1_4:61120987-61121006 Msa0175240:intron 60.0%
CCAGTGGGCACCTGCATCCA+AGG + chr1_4:61121156-61121175 None:intergenic 65.0%
CCTTGGATGCAGGTGCCCAC+TGG - chr1_4:61121153-61121172 Msa0175240:CDS 65.0%
GGATGCAGGTGCCCACTGGT+TGG - chr1_4:61121157-61121176 Msa0175240:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 61119894 61122875 61119894 ID=Msa0175240;Name=Msa0175240
chr1_4 mRNA 61119894 61122875 61119894 ID=Msa0175240-mRNA-1;Parent=Msa0175240;Name=Msa0175240-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|1|1|1|0.91|0.84|13|261|381
chr1_4 exon 61119894 61120222 61119894 ID=Msa0175240-mRNA-1:exon:19502;Parent=Msa0175240-mRNA-1
chr1_4 exon 61120310 61120415 61120310 ID=Msa0175240-mRNA-1:exon:19501;Parent=Msa0175240-mRNA-1
chr1_4 exon 61120508 61120585 61120508 ID=Msa0175240-mRNA-1:exon:19500;Parent=Msa0175240-mRNA-1
chr1_4 exon 61120689 61120735 61120689 ID=Msa0175240-mRNA-1:exon:19499;Parent=Msa0175240-mRNA-1
chr1_4 exon 61120825 61120906 61120825 ID=Msa0175240-mRNA-1:exon:19498;Parent=Msa0175240-mRNA-1
chr1_4 exon 61121065 61121206 61121065 ID=Msa0175240-mRNA-1:exon:19497;Parent=Msa0175240-mRNA-1
chr1_4 exon 61121489 61121604 61121489 ID=Msa0175240-mRNA-1:exon:19496;Parent=Msa0175240-mRNA-1
chr1_4 exon 61121714 61121788 61121714 ID=Msa0175240-mRNA-1:exon:19495;Parent=Msa0175240-mRNA-1
chr1_4 exon 61121868 61121986 61121868 ID=Msa0175240-mRNA-1:exon:19494;Parent=Msa0175240-mRNA-1
chr1_4 exon 61122258 61122325 61122258 ID=Msa0175240-mRNA-1:exon:19493;Parent=Msa0175240-mRNA-1
chr1_4 exon 61122406 61122470 61122406 ID=Msa0175240-mRNA-1:exon:19492;Parent=Msa0175240-mRNA-1
chr1_4 exon 61122563 61122641 61122563 ID=Msa0175240-mRNA-1:exon:19491;Parent=Msa0175240-mRNA-1
chr1_4 exon 61122775 61122875 61122775 ID=Msa0175240-mRNA-1:exon:19490;Parent=Msa0175240-mRNA-1
chr1_4 CDS 61122775 61122875 61122775 ID=Msa0175240-mRNA-1:cds;Parent=Msa0175240-mRNA-1
chr1_4 CDS 61122563 61122641 61122563 ID=Msa0175240-mRNA-1:cds;Parent=Msa0175240-mRNA-1
chr1_4 CDS 61122406 61122470 61122406 ID=Msa0175240-mRNA-1:cds;Parent=Msa0175240-mRNA-1
chr1_4 CDS 61122258 61122325 61122258 ID=Msa0175240-mRNA-1:cds;Parent=Msa0175240-mRNA-1
chr1_4 CDS 61121868 61121986 61121868 ID=Msa0175240-mRNA-1:cds;Parent=Msa0175240-mRNA-1
chr1_4 CDS 61121714 61121788 61121714 ID=Msa0175240-mRNA-1:cds;Parent=Msa0175240-mRNA-1
chr1_4 CDS 61121489 61121604 61121489 ID=Msa0175240-mRNA-1:cds;Parent=Msa0175240-mRNA-1
chr1_4 CDS 61121065 61121206 61121065 ID=Msa0175240-mRNA-1:cds;Parent=Msa0175240-mRNA-1
chr1_4 CDS 61120825 61120906 61120825 ID=Msa0175240-mRNA-1:cds;Parent=Msa0175240-mRNA-1
chr1_4 CDS 61120689 61120735 61120689 ID=Msa0175240-mRNA-1:cds;Parent=Msa0175240-mRNA-1
chr1_4 CDS 61120508 61120585 61120508 ID=Msa0175240-mRNA-1:cds;Parent=Msa0175240-mRNA-1
chr1_4 CDS 61120310 61120415 61120310 ID=Msa0175240-mRNA-1:cds;Parent=Msa0175240-mRNA-1
chr1_4 CDS 61120155 61120222 61120155 ID=Msa0175240-mRNA-1:cds;Parent=Msa0175240-mRNA-1
chr1_4 three_prime_UTR 61119894 61120154 61119894 ID=Msa0175240-mRNA-1:three_prime_utr;Parent=Msa0175240-mRNA-1
Gene Sequence

>Msa0175240

TGTGAGTGTTACTCCAGTTCAGTTTATTTGTTATTGTTTTTTGTGCAGACAGTATTTGATTTTCAGCTAATCAAAGGTCTTATTTCACGGCCAGATTTTAGGTTTACATTTGATGCCATGCATGCAGTTGCTGGTGCTTATGCAACCCCCATCTTTGTGGATAAACTTGGTGCTACTCCGGATTCAATTTCAAATGGAATACCTTTGGAAGATTTTGGACATGGTCATCCTGATCCTAATCTAACATATGCAAAGGATCTTGTCAACATTATGTATGCTGAAAATGGACCTGATTTCGGAGGTGCTAGTGATGGTGACGGGGATAGAAATATGATTTTAGGAACAAGTTTCTTTGTAACTCCTTCAGACTCTGTAGCGGTTATTGCAGCCAATGCAAAAGAAGCGATTCCATACTTCAAGAACAGTGTTAAGGGTCTTGCACGATCAATGCCGACGAGTGGTGCTCTAGATAGAGTTGCTGAAAAGTTGAACCTCCCTTTCTTTGAGGTGCCCACTGGTTGGAAATTTTTTGGGAATCTTATGGATGCTGGGAATTTGTCAATTTGCGGGGAAGAGAGTTTTGGAACAGGTTCTGACCACATCCGTGAGAAAGACGGAATCTGGGCTGTATTAGCTTGGCTTTCTATTATTGCTCACCGCAACAAAGACACGAAACCAGGGGAGAAATTGATCTCTGTATCTGATGTTGTAAAGGAACATTGGGCAACCTATGGTAGAAATTTCTTTTCTAGATATGACTACGAGGAATGTGAATCCGAAGGGGCCAATAAGATGATAGAGTATCTAAGAGAGTGTCTGTGTAAGAGCAAGCCCGGTGATAAGTATGGAAGTTATGTCCTCCAGTTTGCAGATGATTTTACATACACTGATCCTGTAGATGGAAGTGTGGTATCAAAACAAGGGGTCCGGTTTGTTTTTACGGATGGTTCAAGGATTATTTATCGTTTATCAGGAACAGGTTCTGCTGGTGCAACTGTTAGAGTGTATATTGAACAGTTTGAACCAGATGTTTCTAAACACGACCTTGACGCTCAAATTGCCTTGAAACCGTTAATAGATTTAGCATTATCCGTTTCAAAGCTCAAAGAGTTCACAGGGAGAGAGAAGCCTACAGTCATCACTTAA

Protein sequence

>Msa0175240

CECYSSSVYLLLFFVQTVFDFQLIKGLISRPDFRFTFDAMHAVAGAYATPIFVDKLGATPDSISNGIPLEDFGHGHPDPNLTYAKDLVNIMYAENGPDFGGASDGDGDRNMILGTSFFVTPSDSVAVIAANAKEAIPYFKNSVKGLARSMPTSGALDRVAEKLNLPFFEVPTGWKFFGNLMDAGNLSICGEESFGTGSDHIREKDGIWAVLAWLSIIAHRNKDTKPGEKLISVSDVVKEHWATYGRNFFSRYDYEECESEGANKMIEYLRECLCKSKPGDKYGSYVLQFADDFTYTDPVDGSVVSKQGVRFVFTDGSRIIYRLSGTGSAGATVRVYIEQFEPDVSKHDLDAQIALKPLIDLALSVSKLKEFTGREKPTVIT*