AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0639630

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0639630 MtrunA17_Chr4g0021981 99.729 369 1 0 1 369 1 369 0.0 768
Msa0639630 MtrunA17_Chr4g0022021 86.450 369 50 0 1 369 1 369 0.0 679
Msa0639630 MtrunA17_Chr3g0121301 39.412 340 195 6 31 366 27 359 3.18e-84 260
Msa0639630 MtrunA17_Chr5g0432251 41.595 351 193 7 25 368 14 359 2.12e-83 258
Msa0639630 MtrunA17_Chr5g0432301 38.968 349 203 6 25 367 15 359 3.81e-80 249
Msa0639630 MtrunA17_Chr5g0432241 38.567 363 206 8 18 368 3 360 3.04e-75 237
Msa0639630 MtrunA17_Chr7g0276401 40.805 348 184 11 15 349 18 356 1.07e-73 233
Msa0639630 MtrunA17_Chr7g0276411 37.209 344 193 12 22 349 7 343 4.64e-71 226
Msa0639630 MtrunA17_Chr5g0432211 37.356 348 198 7 25 368 14 345 5.68e-68 218
Msa0639630 MtrunA17_Chr5g0432261 37.249 349 183 7 25 368 10 327 4.71e-67 214
Msa0639630 MtrunA17_Chr3g0128011 36.145 332 198 9 44 367 90 415 8.90e-67 217
Msa0639630 MtrunA17_Chr5g0448091 38.838 327 172 11 44 354 35 349 9.59e-67 215
Msa0639630 MtrunA17_Chr4g0040621 35.655 359 200 8 25 368 27 369 3.44e-66 214
Msa0639630 MtrunA17_Chr1g0188391 36.212 359 213 9 20 368 9 361 2.21e-65 211
Msa0639630 MtrunA17_Chr8g0345851 46.341 246 123 6 107 349 32 271 6.63e-65 208
Msa0639630 MtrunA17_Chr8g0367491 36.152 343 194 12 34 358 33 368 1.07e-64 210
Msa0639630 MtrunA17_Chr7g0219161 37.283 346 199 8 18 354 7 343 6.74e-63 205
Msa0639630 MtrunA17_Chr8g0367441 35.817 349 202 11 16 349 17 358 1.16e-62 205
Msa0639630 MtrunA17_Chr7g0219141 33.858 381 215 10 1 368 1 357 3.90e-60 197
Msa0639630 MtrunA17_Chr8g0367451 34.493 345 206 10 20 353 26 361 2.44e-59 196
Msa0639630 MtrunA17_Chr7g0223231 33.526 346 218 7 23 365 11 347 1.33e-58 193
Msa0639630 MtrunA17_Chr8g0367501 35.191 341 201 11 20 349 13 344 2.03e-58 195
Msa0639630 MtrunA17_Chr7g0223241 34.018 341 213 6 28 365 16 347 6.37e-58 192
Msa0639630 MtrunA17_Chr4g0046361 32.967 364 232 8 13 368 2 361 8.15e-58 192
Msa0639630 MtrunA17_Chr4g0014641 34.247 365 226 8 14 368 3 363 1.14e-56 189
Msa0639630 MtrunA17_Chr1g0188371 35.015 337 206 9 20 348 9 340 3.31e-56 188
Msa0639630 MtrunA17_Chr8g0367381 34.337 332 180 10 19 336 19 326 1.42e-55 185
Msa0639630 MtrunA17_Chr4g0046531 34.000 350 222 7 23 368 374 718 2.79e-55 192
Msa0639630 MtrunA17_Chr4g0046531 33.524 349 223 7 23 367 12 355 3.24e-54 190
Msa0639630 MtrunA17_Chr4g0014561 34.819 359 220 8 20 368 9 363 5.53e-54 182
Msa0639630 MtrunA17_Chr4g0046341 34.511 368 224 9 13 368 2 364 2.72e-53 180
Msa0639630 MtrunA17_Chr4g0014681 34.540 359 221 8 20 368 9 363 2.80e-53 180
Msa0639630 MtrunA17_Chr3g0085211 34.579 321 196 10 43 355 42 356 3.29e-51 175
Msa0639630 MtrunA17_Chr7g0218301 35.758 330 187 10 43 355 40 361 8.73e-51 174
Msa0639630 MtrunA17_Chr2g0307521 35.514 321 186 10 44 352 35 346 1.68e-50 172
Msa0639630 MtrunA17_Chr7g0218271 36.474 329 184 10 44 355 41 361 6.28e-50 171
Msa0639630 MtrunA17_Chr1g0200491 34.985 323 192 8 44 354 41 357 1.36e-49 171
Msa0639630 MtrunA17_Chr7g0218211 35.077 325 191 11 43 355 39 355 2.24e-49 170
Msa0639630 MtrunA17_Chr1g0163621 33.333 324 196 11 44 354 52 368 2.42e-49 170
Msa0639630 MtrunA17_Chr7g0218261 34.985 323 193 11 43 355 39 354 2.40e-48 167
Msa0639630 MtrunA17_Chr1g0163611 32.743 339 206 12 44 367 38 369 3.30e-48 167
Msa0639630 MtrunA17_Chr3g0130011 32.022 356 229 9 16 365 7 355 6.36e-48 166
Msa0639630 MtrunA17_Chr1g0163601 33.642 324 195 11 44 354 38 354 9.36e-48 166
Msa0639630 MtrunA17_Chr7g0218181 33.951 324 191 11 44 355 41 353 3.77e-47 164
Msa0639630 MtrunA17_Chr3g0085201 32.500 320 202 9 44 355 30 343 8.11e-47 163
Msa0639630 MtrunA17_Chr2g0314271 33.739 329 207 9 43 365 28 351 1.16e-46 162
Msa0639630 MtrunA17_Chr7g0218131 34.056 323 193 10 44 354 41 355 1.46e-46 162
Msa0639630 MtrunA17_Chr4g0014661 32.507 363 229 8 14 368 3 357 3.32e-46 161
Msa0639630 MtrunA17_Chr3g0130061 31.373 357 230 10 16 365 7 355 1.27e-44 157
Msa0639630 MtrunA17_Chr4g0014591 31.944 360 235 7 14 368 3 357 1.17e-42 152
Msa0639630 MtrunA17_Chr6g0482291 42.857 161 81 4 190 349 7 157 3.87e-37 132
Msa0639630 MtrunA17_Chr8g0367401 49.091 110 55 1 161 270 2 110 3.79e-30 112
Msa0639630 MtrunA17_Chr7g0219171 42.537 134 72 3 238 368 117 248 1.31e-29 114
Msa0639630 MtrunA17_Chr4g0014601 30.651 261 177 4 14 273 3 260 3.31e-29 114
Msa0639630 MtrunA17_Chr4g0011691 46.875 96 51 0 272 367 140 235 2.05e-26 105
Msa0639630 MtrunA17_Chr4g0011691 42.105 76 40 1 21 96 17 88 6.12e-12 65.1
Msa0639630 MtrunA17_Chr8g0367461 46.316 95 47 3 257 349 1 93 5.75e-20 84.3
Msa0639630 MtrunA17_Chr1g0170941 53.333 75 34 1 193 267 2 75 2.16e-19 81.6
Msa0639630 MtrunA17_Chr8g0367421 40.000 110 48 2 161 270 2 93 6.29e-18 79.3
Msa0639630 MtrunA17_Chr8g0367391 46.512 86 42 4 266 349 32 115 3.88e-17 77.4
Msa0639630 MtrunA17_Chr8g0367471 42.105 76 43 1 184 259 1 75 7.06e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0639630 AT5G54160.1 38.318 321 185 7 42 355 34 348 2.11e-72 230
Msa0639630 AT4G35160.1 34.254 362 217 6 22 367 24 380 9.53e-66 213
Msa0639630 AT1G77520.1 36.240 367 211 10 17 365 17 378 1.87e-64 210
Msa0639630 AT1G51990.1 32.787 366 222 12 16 368 8 362 7.01e-57 189
Msa0639630 AT4G35150.1 30.056 356 197 7 22 367 10 323 1.60e-56 187
Msa0639630 AT1G33030.1 36.760 321 186 11 44 354 23 336 2.26e-55 185
Msa0639630 AT1G63140.2 34.903 361 212 10 11 355 15 368 6.19e-55 185
Msa0639630 AT1G63140.4 34.903 361 212 10 11 355 35 388 1.15e-54 185
Msa0639630 AT1G51990.2 32.514 366 223 12 16 368 8 362 1.41e-54 184
Msa0639630 AT1G77530.1 35.870 368 213 11 16 365 16 378 1.75e-54 184
Msa0639630 AT5G53810.1 34.694 343 196 10 44 369 42 373 5.55e-52 177
Msa0639630 AT3G53140.1 33.618 351 215 10 27 365 12 356 2.88e-49 170
Msa0639630 AT1G62900.1 45.026 191 101 3 167 355 4 192 7.17e-48 161
Msa0639630 AT5G37170.2 36.052 233 142 5 138 365 1 231 1.42e-45 156
Msa0639630 AT1G21130.1 35.207 338 197 13 44 367 42 371 2.26e-45 160
Msa0639630 AT1G21100.1 35.207 338 197 12 44 367 42 371 4.55e-45 159
Msa0639630 AT5G37170.1 32.792 308 176 10 63 365 50 331 7.80e-45 157
Msa0639630 AT1G21120.1 34.320 338 200 12 44 367 42 371 1.37e-43 155
Msa0639630 AT1G21110.1 33.728 338 202 12 44 367 42 371 2.78e-43 154
Msa0639630 AT1G21120.2 34.320 338 200 12 44 367 90 419 3.36e-43 155
Msa0639630 AT1G76790.1 35.258 329 188 12 44 355 32 352 4.64e-41 148
Msa0639630 AT5G37170.3 39.560 182 105 4 187 365 4 183 1.39e-40 142
Msa0639630 AT1G33030.2 35.745 235 138 8 44 270 23 252 8.01e-31 118
Msa0639630 AT1G33030.3 35.745 235 138 8 44 270 23 252 1.54e-30 118
Msa0639630 AT1G63140.1 31.022 274 169 8 11 270 35 302 8.91e-27 108
Msa0639630 AT1G21130.2 33.054 239 142 9 44 270 42 274 4.55e-21 92.4
Msa0639630 AT1G63140.3 28.916 249 157 8 11 245 35 277 5.12e-17 80.9
Msa0639630 AT1G77530.2 30.800 250 153 9 16 249 16 261 2.15e-15 75.9

Find 111 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCAACCAAAGACTTAATT+TGG 0.166048 4_3:+36170014 None:intergenic
CAATATAAAATTAAAGAAAT+TGG 0.177243 4_3:-36169042 Msa0639630:three_prime_UTR
GTAAATGGTTCATTTCCTTC+TGG 0.225351 4_3:+36169569 None:intergenic
TGCTTGGACAAATTGAAATA+TGG 0.256837 4_3:-36170552 Msa0639630:CDS
GTTTAACCAAATTAAGTCTT+TGG 0.272207 4_3:-36170020 Msa0639630:CDS
AGAACAGTCTCCATGTTCTT+TGG 0.276269 4_3:+36174297 None:intergenic
TGGGTGATACCATCAAAATT+AGG 0.296621 4_3:+36169893 None:intergenic
AAAATGGCACTGCTTTCTTT+AGG 0.298524 4_3:-36170168 Msa0639630:CDS
GCTATCCCAGTGTCGGTAAA+TGG 0.307296 4_3:+36169554 None:intergenic
CTCACCACCTTCTGCCTTCA+AGG 0.309125 4_3:-36174265 Msa0639630:intron
GGGTGATACCATCAAAATTA+GGG 0.318382 4_3:+36169894 None:intergenic
GCTTGACACGTGCATCAAAA+TGG 0.327202 4_3:-36170300 Msa0639630:CDS
TAAATGGTTCATTTCCTTCT+GGG 0.333897 4_3:+36169570 None:intergenic
TTGTGTTGTGTGGCTTTACT+TGG 0.351030 4_3:-36169320 Msa0639630:three_prime_UTR
CTTAAAAGTAGAGTGGAATC+AGG 0.364299 4_3:+36170394 None:intergenic
ATTCTGCACAATTTGAGTTA+AGG 0.365186 4_3:+36170435 None:intergenic
GGCAGAAGGTGGTGAGTGTT+TGG 0.386189 4_3:+36174272 None:intergenic
GTGTCGAGGGCTGTTATTGC+TGG 0.396054 4_3:-36170055 Msa0639630:CDS
ACAATTTGAGTTAAGGATAG+TGG 0.413559 4_3:+36170442 None:intergenic
ATTAGTGAAATTATAAAAGA+AGG 0.414681 4_3:-36170196 Msa0639630:CDS
AAGAAAGAACTGAAGAGAAC+TGG 0.424963 4_3:-36169493 Msa0639630:CDS
GCCATAACGGTCTATAATAT+CGG 0.426995 4_3:+36170468 None:intergenic
TTAGCAGGGTTCAAATGAAA+AGG 0.429287 4_3:+36170223 None:intergenic
CATCTTCCATGAATTTAGAC+TGG 0.429361 4_3:+36169389 None:intergenic
AATATAAAATTAAAGAAATT+GGG 0.434737 4_3:-36169041 Msa0639630:three_prime_UTR
ATTTCACTAATAAAGTTAGC+AGG 0.435103 4_3:+36170208 None:intergenic
GTTATTGCTGGATACAAAGA+TGG 0.437111 4_3:-36170043 Msa0639630:CDS
ATGGAAGATGACGAGTTTGT+TGG 0.440293 4_3:-36169376 Msa0639630:three_prime_UTR
AGTCTTTGGTTGATGTTGGC+GGG 0.446010 4_3:-36170006 Msa0639630:CDS
GCATTCCCAGTCTAAATTCA+TGG 0.449506 4_3:-36169395 Msa0639630:exon
ACTGCTTTCTTTAGGTGTCA+TGG 0.450664 4_3:-36170160 Msa0639630:CDS
AAGTCTTTGGTTGATGTTGG+CGG 0.462461 4_3:-36170007 Msa0639630:CDS
CATGAACAATTTGAAATGAC+GGG 0.462928 4_3:-36170136 Msa0639630:CDS
AGGATAGTGGTTTGCCATAA+CGG 0.463766 4_3:+36170455 None:intergenic
TTCAAATTATGATACACAAA+AGG 0.466985 4_3:+36169272 None:intergenic
TCTATATCTACGCACCTTGA+AGG 0.472047 4_3:+36174251 None:intergenic
AAGGCAATACCAGAGAAAAC+AGG 0.476074 4_3:-36169623 Msa0639630:CDS
AATTAAAGAAATTGGGTCAT+GGG 0.478858 4_3:-36169034 Msa0639630:three_prime_UTR
GCCGATATTATAGACCGTTA+TGG 0.483784 4_3:-36170469 Msa0639630:CDS
GGCAGTGGATTCTTCATGAC+TGG 0.484877 4_3:-36169685 Msa0639630:intron
TAACTTTGATTTGCCTCATG+TGG 0.490029 4_3:-36169927 Msa0639630:CDS
ATTAAGTCTTTGGTTGATGT+TGG 0.491660 4_3:-36170010 Msa0639630:CDS
AAACATGTCTCCTCCAACAT+GGG 0.498630 4_3:+36169874 None:intergenic
GTCTTTGGTTGATGTTGGCG+GGG 0.504180 4_3:-36170005 Msa0639630:CDS
TTAAAAGTAGAGTGGAATCA+GGG 0.508759 4_3:+36170395 None:intergenic
GAAGAAGAAGAATCATTGCT+TGG 0.509681 4_3:-36170568 Msa0639630:CDS
TTTGATGGTATCACCCATGT+TGG 0.511129 4_3:-36169887 Msa0639630:CDS
GATATTGAAGAATTGTAGAA+AGG 0.519416 4_3:-36169642 Msa0639630:CDS
AATGAACCATTTACCGACAC+TGG 0.520366 4_3:-36169560 Msa0639630:CDS
TGACTTGTTCAACCAAGGTA+TGG 0.521535 4_3:-36170095 Msa0639630:CDS
GATGGTATCACCCATGTTGG+AGG 0.521547 4_3:-36169884 Msa0639630:CDS
AGCTAGCTATGATTCATGCA+TGG 0.523703 4_3:-36169226 Msa0639630:three_prime_UTR
AAATTAAAGAAATTGGGTCA+TGG 0.525972 4_3:-36169035 Msa0639630:three_prime_UTR
GTAATTCAAGTGAGGGGTGA+GGG 0.530238 4_3:+36174326 None:intergenic
GATCATTGTGGATCATGTAT+TGG 0.533084 4_3:-36169594 Msa0639630:CDS
ACAATTTGAAATGACGGGGT+TGG 0.533144 4_3:-36170131 Msa0639630:CDS
TCTTCAATATCTTTATGCAA+TGG 0.534210 4_3:+36169654 None:intergenic
CAAACATGTCTCCTCCAACA+TGG 0.536952 4_3:+36169873 None:intergenic
AAATACTTATTCAACGAGAC+AGG 0.536963 4_3:-36169470 Msa0639630:CDS
TTTGCCTCATGTGGTTTCAA+CGG 0.539222 4_3:-36169918 Msa0639630:CDS
TTTCACTAATAAAGTTAGCA+GGG 0.540307 4_3:+36170209 None:intergenic
GCTAGCTATGATTCATGCAT+GGG 0.540353 4_3:-36169225 Msa0639630:three_prime_UTR
CAAGCCGTAGAGAATTTCCC+CGG 0.542265 4_3:+36170318 None:intergenic
TGCTGATGCTATTTACATGA+AGG 0.545789 4_3:-36169837 Msa0639630:intron
TAGCAGGGTTCAAATGAAAA+GGG 0.549937 4_3:+36170224 None:intergenic
TGTAATTCAAGTGAGGGGTG+AGG 0.550841 4_3:+36174325 None:intergenic
CATGAATCATAGCTAGCTCT+AGG 0.551516 4_3:+36169231 None:intergenic
AGGATAAGCTCTAACAATCT+CGG 0.552345 4_3:+36169964 None:intergenic
TCATGAACAATTTGAAATGA+CGG 0.554113 4_3:-36170137 Msa0639630:CDS
TTCGTATGTGTTGTGTTGTG+TGG 0.557358 4_3:-36169330 Msa0639630:three_prime_UTR
TTATTGCTGGATACAAAGAT+GGG 0.557554 4_3:-36170042 Msa0639630:CDS
TTTAAGAGTAATGAGAGTCA+TGG 0.559249 4_3:-36170377 Msa0639630:CDS
TATTGACCAGGGTGTGAGCA+AGG 0.559868 4_3:-36170590 Msa0639630:intron
CTGCTATCTGATCTGCTGAT+GGG 0.562055 4_3:+36169188 None:intergenic
ATCTTCCATGAATTTAGACT+GGG 0.572279 4_3:+36169390 None:intergenic
GGAATTGTGTAATTCAAGTG+AGG 0.574904 4_3:+36174318 None:intergenic
CACCGCTAGAATTGTGTCGA+GGG 0.576078 4_3:-36170068 Msa0639630:CDS
TAGCGGTGCAAACCATACCT+TGG 0.586631 4_3:+36170083 None:intergenic
CATTACTCTTAAAAGTAGAG+TGG 0.588009 4_3:+36170387 None:intergenic
TCTGCTATCTGATCTGCTGA+TGG 0.591530 4_3:+36169187 None:intergenic
GCACCGCTAGAATTGTGTCG+AGG 0.594031 4_3:-36170069 Msa0639630:CDS
ATGTAAATAGCATCAGCACT+AGG 0.596076 4_3:+36169842 None:intergenic
GTCAAATGCTATCCCAGTGT+CGG 0.602762 4_3:+36169547 None:intergenic
TCTTTGGTTGATGTTGGCGG+GGG 0.603652 4_3:-36170004 Msa0639630:CDS
CTACGCACCTTGAAGGCAGA+AGG 0.604702 4_3:+36174258 None:intergenic
TGCTCTGCCATGCATCATTG+AGG 0.607068 4_3:-36169417 Msa0639630:CDS
ATGTTGCTTGCTCACAACGC+TGG 0.609694 4_3:-36169521 Msa0639630:CDS
ATGAACCATTTACCGACACT+GGG 0.609768 4_3:-36169559 Msa0639630:CDS
AAGTTAATAGCTTGAATGTG+AGG 0.610156 4_3:+36169944 None:intergenic
GAATTGTGTAATTCAAGTGA+GGG 0.614109 4_3:+36174319 None:intergenic
AACAGGAAAGGTGATCATTG+TGG 0.615274 4_3:-36169606 Msa0639630:CDS
GAAACCGGGGAAATTCTCTA+CGG 0.620852 4_3:-36170322 Msa0639630:CDS
CGCACCTTGAAGGCAGAAGG+TGG 0.621755 4_3:+36174261 None:intergenic
TACAATGACTTGTTCAACCA+AGG 0.624846 4_3:-36170100 Msa0639630:CDS
AGCTATGATTCATGCATGGG+GGG 0.627479 4_3:-36169222 Msa0639630:three_prime_UTR
TTACACAATTCCAAAGAACA+TGG 0.645218 4_3:-36174307 Msa0639630:exon
CTAGCTATGATTCATGCATG+GGG 0.649012 4_3:-36169224 Msa0639630:three_prime_UTR
TGATTCTCTAGCAACAACAT+TGG 0.649459 4_3:+36170247 None:intergenic
GATCATGTATTGGACCCAGA+AGG 0.652817 4_3:-36169584 Msa0639630:CDS
GGGAATGCCTCAATGATGCA+TGG 0.663145 4_3:+36169410 None:intergenic
TAAAAGTAGAGTGGAATCAG+GGG 0.667415 4_3:+36170396 None:intergenic
AGTAGAGTGGAATCAGGGGA+AGG 0.670234 4_3:+36170400 None:intergenic
AATACCAGAGAAAACAGGAA+AGG 0.671132 4_3:-36169618 Msa0639630:CDS
ATGAACAATTTGAAATGACG+GGG 0.676832 4_3:-36170135 Msa0639630:CDS
GGTGATACCATCAAAATTAG+GGG 0.681590 4_3:+36169895 None:intergenic
TTGCTTGCTCACAACGCTGG+TGG 0.684054 4_3:-36169518 Msa0639630:CDS
GAATCATAGCTAGCTCTAGG+TGG 0.688847 4_3:+36169234 None:intergenic
AGCCCTCGACACAATTCTAG+CGG 0.693934 4_3:+36170066 None:intergenic
TAGCTATGATTCATGCATGG+GGG 0.705108 4_3:-36169223 Msa0639630:three_prime_UTR
GGGGCCGTTGAAACCACATG+AGG 0.722984 4_3:+36169914 None:intergenic
AATTGTGTAATTCAAGTGAG+GGG 0.729342 4_3:+36174320 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATTATAAATGTATC+TGG + chr4_3:36169326-36169345 None:intergenic 10.0%
!!! AATTTAGTTATTTTACTTAA+TGG - chr4_3:36170171-36170190 Msa0639630:CDS 10.0%
!! TTGAAAAAAAAAAACTTAAT+AGG - chr4_3:36170439-36170458 Msa0639630:CDS 10.0%
!!! ACATATATAATTTGATTTAA+TGG - chr4_3:36170656-36170675 Msa0639630:intron 10.0%
!! AAATTTGATAAAAAAATTAG+AGG + chr4_3:36170871-36170890 None:intergenic 10.0%
!! AATAAAATACATATGATAAA+AGG + chr4_3:36171468-36171487 None:intergenic 10.0%
!!! ATACATATTTTTTTTTTTTG+AGG + chr4_3:36171494-36171513 None:intergenic 10.0%
!!! ATTTTAAAATTCATCAATTT+TGG + chr4_3:36171994-36172013 None:intergenic 10.0%
!! TATAAAACTTGATTAATAAT+AGG + chr4_3:36172750-36172769 None:intergenic 10.0%
!! CAATATAAAATTAAAGAAAT+TGG - chr4_3:36174316-36174335 Msa0639630:five_prime_UTR 10.0%
!! AAATTTAAATAAGACTAAGT+AGG + chr4_3:36169245-36169264 None:intergenic 15.0%
!! GCAAAATTGAATTATAAAAT+TGG - chr4_3:36169686-36169705 Msa0639630:intron 15.0%
!! AAAGAAAGAAGAAAAAAATA+GGG + chr4_3:36170296-36170315 None:intergenic 15.0%
!! AAAAGAAAGAAGAAAAAAAT+AGG + chr4_3:36170297-36170316 None:intergenic 15.0%
!! TATAAGTGATTATTTGAAAA+AGG - chr4_3:36170402-36170421 Msa0639630:CDS 15.0%
!!! CTTATTGATCTTTTTTTTTT+TGG + chr4_3:36170631-36170650 None:intergenic 15.0%
!!! GATTTAATATTTTCCAAAAT+AGG - chr4_3:36171160-36171179 Msa0639630:intron 15.0%
!!! TATACTATGGTATAATTTTA+TGG - chr4_3:36171251-36171270 Msa0639630:intron 15.0%
!! AAGTATTATATACAATAATC+TGG + chr4_3:36171316-36171335 None:intergenic 15.0%
!! TAATTTAGATAATGTCATAT+GGG + chr4_3:36171592-36171611 None:intergenic 15.0%
!! ATAATTTAGATAATGTCATA+TGG + chr4_3:36171593-36171612 None:intergenic 15.0%
!!! TCATATTCTTATTAGATTTT+AGG - chr4_3:36171612-36171631 Msa0639630:intron 15.0%
!!! TCTTTAGTTTATAAATAAGT+GGG + chr4_3:36171720-36171739 None:intergenic 15.0%
!!! TTCTTTAGTTTATAAATAAG+TGG + chr4_3:36171721-36171740 None:intergenic 15.0%
!! CATGTAAATAATTTATCAAT+TGG - chr4_3:36171882-36171901 Msa0639630:intron 15.0%
!! AAAAGAAACCTTATAAAAAA+TGG - chr4_3:36172118-36172137 Msa0639630:intron 15.0%
!!! ATATTTCACCATTTTTTATA+AGG + chr4_3:36172129-36172148 None:intergenic 15.0%
!!! TATTTTTATGTAATTGAGAT+AGG + chr4_3:36172461-36172480 None:intergenic 15.0%
!!! TAAACATTGATAATATCTTT+AGG - chr4_3:36172619-36172638 Msa0639630:intron 15.0%
!! ATTAGTGAAATTATAAAAGA+AGG - chr4_3:36173162-36173181 Msa0639630:intron 15.0%
!! ACACATGAATTTAATTATAA+TGG - chr4_3:36173600-36173619 Msa0639630:intron 15.0%
!! ATCTTAATTAAAGATAGTGT+TGG + chr4_3:36170265-36170284 None:intergenic 20.0%
!! TTTAACCTCAGTAAAAAAAA+GGG + chr4_3:36170493-36170512 None:intergenic 20.0%
!!! AGACTTTTACTTTTCTAATT+TGG + chr4_3:36171049-36171068 None:intergenic 20.0%
!! GTCATCATTATTTAAAAATC+AGG + chr4_3:36171079-36171098 None:intergenic 20.0%
!! GTTTGATATTAGTTATACTA+TGG - chr4_3:36171238-36171257 Msa0639630:intron 20.0%
!! AAGAAAAAGAAGATTATAAC+CGG + chr4_3:36171362-36171381 None:intergenic 20.0%
!! GTAAATAATTTATCAATTGG+AGG - chr4_3:36171885-36171904 Msa0639630:intron 20.0%
!!! CAAATTTTTAGACTAAACAA+TGG + chr4_3:36171962-36171981 None:intergenic 20.0%
!! GGTCTATAATGATAAAATAT+AGG + chr4_3:36172071-36172090 None:intergenic 20.0%
!!! TTTTTTTTTTTAAGAGAGTG+TGG + chr4_3:36172174-36172193 None:intergenic 20.0%
!! TGAGCAATAATAACTATTAA+AGG + chr4_3:36172541-36172560 None:intergenic 20.0%
!! AAACTTGATTAATAATAGGA+TGG + chr4_3:36172746-36172765 None:intergenic 20.0%
!! TTTCAAATTTATTGTGCATT+TGG - chr4_3:36173572-36173591 Msa0639630:intron 20.0%
!!! TTTAAAATTGACCTTATCTT+TGG - chr4_3:36173644-36173663 Msa0639630:intron 20.0%
!! TTAAAATTGACCTTATCTTT+GGG - chr4_3:36173645-36173664 Msa0639630:intron 20.0%
!! TTCAAATTATGATACACAAA+AGG + chr4_3:36174089-36174108 None:intergenic 20.0%
!!! AGTTAAATGAATTTTAGAAG+AGG + chr4_3:36174284-36174303 None:intergenic 20.0%
! AACTGAACATTATACAAACT+GGG + chr4_3:36169414-36169433 None:intergenic 25.0%
! AGTTTGTATAATGTTCAGTT+CGG - chr4_3:36169414-36169433 Msa0639630:CDS 25.0%
! TGCAAAAAAAATTTCATGCA+AGG - chr4_3:36169546-36169565 Msa0639630:CDS 25.0%
! GCAAAAAAAATTTCATGCAA+GGG - chr4_3:36169547-36169566 Msa0639630:CDS 25.0%
!! AATAATTAGTGTTGAGATTG+TGG - chr4_3:36169573-36169592 Msa0639630:CDS 25.0%
! ATGTAAACTACATATGTGTA+AGG - chr4_3:36169628-36169647 Msa0639630:CDS 25.0%
! GAATTATAAAATTGGACAAC+AGG - chr4_3:36169694-36169713 Msa0639630:intron 25.0%
! CAAAAAATTGTTCAACATTG+TGG + chr4_3:36170107-36170126 None:intergenic 25.0%
!!! TTTTACCCTTTTTTTTACTG+AGG - chr4_3:36170485-36170504 Msa0639630:CDS 25.0%
! CTTTAACCTCAGTAAAAAAA+AGG + chr4_3:36170494-36170513 None:intergenic 25.0%
! AAAAAATTAGAGGATCTTGT+AGG + chr4_3:36170861-36170880 None:intergenic 25.0%
!! GTTTTGTCTCAAAAATTTGA+GGG + chr4_3:36170954-36170973 None:intergenic 25.0%
!! ATAATTTTGTCTACCACAAT+GGG - chr4_3:36171216-36171235 Msa0639630:intron 25.0%
!! CTTTTTCTTTTACAAAATCG+TGG - chr4_3:36171373-36171392 Msa0639630:intron 25.0%
!!! GTATTTTATTTATCTAGCTG+AGG - chr4_3:36171510-36171529 Msa0639630:intron 25.0%
! TAGTTTATAAATAAGTGGGA+GGG + chr4_3:36171716-36171735 None:intergenic 25.0%
! TTAGTTTATAAATAAGTGGG+AGG + chr4_3:36171717-36171736 None:intergenic 25.0%
! TATTGATCATTCCATTTCAT+CGG + chr4_3:36171782-36171801 None:intergenic 25.0%
! CATCAATAAAATAGTAAGTG+TGG + chr4_3:36172199-36172218 None:intergenic 25.0%
! TCTTTCTAACACATTATTGT+GGG + chr4_3:36172348-36172367 None:intergenic 25.0%
! ATCTTTCTAACACATTATTG+TGG + chr4_3:36172349-36172368 None:intergenic 25.0%
! TTATCGTTTACATTTCACTT+TGG - chr4_3:36172385-36172404 Msa0639630:intron 25.0%
!! TTGCTCAATTTTGCAAAAAA+AGG - chr4_3:36172554-36172573 Msa0639630:intron 25.0%
!! TGCTCAATTTTGCAAAAAAA+GGG - chr4_3:36172555-36172574 Msa0639630:intron 25.0%
!!! AATCAAGTTTTATATTGACC+AGG - chr4_3:36172756-36172775 Msa0639630:intron 25.0%
!!! ATCAAGTTTTATATTGACCA+GGG - chr4_3:36172757-36172776 Msa0639630:intron 25.0%
! TTTCACTAATAAAGTTAGCA+GGG + chr4_3:36173152-36173171 None:intergenic 25.0%
! ATTTCACTAATAAAGTTAGC+AGG + chr4_3:36173153-36173172 None:intergenic 25.0%
!! ATAAAAGAAGGCACAAAAAA+TGG - chr4_3:36173174-36173193 Msa0639630:intron 25.0%
!! TCATGAACAATTTGAAATGA+CGG - chr4_3:36173221-36173240 Msa0639630:intron 25.0%
! GTTTAACCAAATTAAGTCTT+TGG - chr4_3:36173338-36173357 Msa0639630:intron 25.0%
! TCTTCAATATCTTTATGCAA+TGG + chr4_3:36173707-36173726 None:intergenic 25.0%
! GATATTGAAGAATTGTAGAA+AGG - chr4_3:36173716-36173735 Msa0639630:intron 25.0%
!!! GAATTTTAGAAGAGGAAAAA+GGG + chr4_3:36174276-36174295 None:intergenic 25.0%
!!! TGAATTTTAGAAGAGGAAAA+AGG + chr4_3:36174277-36174296 None:intergenic 25.0%
! AAATTAAAGAAATTGGGTCA+TGG - chr4_3:36174323-36174342 Msa0639630:five_prime_UTR 25.0%
! AATTAAAGAAATTGGGTCAT+GGG - chr4_3:36174324-36174343 Msa0639630:five_prime_UTR 25.0%
AATTGTGTAATTCAAGTGAG+GGG + chr4_3:36169041-36169060 None:intergenic 30.0%
GAATTGTGTAATTCAAGTGA+GGG + chr4_3:36169042-36169061 None:intergenic 30.0%
TTACACAATTCCAAAGAACA+TGG - chr4_3:36169051-36169070 Msa0639630:three_prime_UTR 30.0%
AAAAACGTTGCATATTGTCA+TGG + chr4_3:36169275-36169294 None:intergenic 30.0%
TTATTTAAGTGATGTTCCAG+TGG - chr4_3:36169352-36169371 Msa0639630:three_prime_UTR 30.0%
GAACTGAACATTATACAAAC+TGG + chr4_3:36169415-36169434 None:intergenic 30.0%
GGTCTACAATAAATCTTGAT+TGG - chr4_3:36169649-36169668 Msa0639630:CDS 30.0%
AGGTACATACTAATCACAAA+TGG - chr4_3:36169714-36169733 Msa0639630:intron 30.0%
! CGTTAAAAAGGCAATTTTCA+TGG + chr4_3:36169871-36169890 None:intergenic 30.0%
!!! GCAAGTTTTAGACGTTAAAA+AGG + chr4_3:36169883-36169902 None:intergenic 30.0%
!!! GTTTTCTAGTTATAAGTCAG+CGG + chr4_3:36169953-36169972 None:intergenic 30.0%
CTGACTTATAACTAGAAAAC+TGG - chr4_3:36169953-36169972 Msa0639630:CDS 30.0%
ACTTATAACTAGAAAACTGG+CGG - chr4_3:36169956-36169975 Msa0639630:CDS 30.0%
!! AGTCTTTTTCATGTGTTTCT+AGG - chr4_3:36170003-36170022 Msa0639630:CDS 30.0%
! TTTTCATCAGTTAGACATAG+TGG + chr4_3:36170138-36170157 None:intergenic 30.0%
! CGTTTTGTCTCAAAAATTTG+AGG + chr4_3:36170955-36170974 None:intergenic 30.0%
AAATTGACACTAATTCTCTC+TGG - chr4_3:36171108-36171127 Msa0639630:intron 30.0%
! GAGAAAAAACGAACCTATTT+TGG + chr4_3:36171176-36171195 None:intergenic 30.0%
! CATAATTTTGTCTACCACAA+TGG - chr4_3:36171215-36171234 Msa0639630:intron 30.0%
AACTAATATCAAACCCATTG+TGG + chr4_3:36171232-36171251 None:intergenic 30.0%
AGATAATGTCATATGGGTTT+GGG + chr4_3:36171586-36171605 None:intergenic 30.0%
TAGATAATGTCATATGGGTT+TGG + chr4_3:36171587-36171606 None:intergenic 30.0%
!!! ATCTTATTTTCAACCACTCA+TGG - chr4_3:36171653-36171672 Msa0639630:intron 30.0%
! AACGGGTGGATTTAAAAATA+GGG + chr4_3:36171688-36171707 None:intergenic 30.0%
! AAACGGGTGGATTTAAAAAT+AGG + chr4_3:36171689-36171708 None:intergenic 30.0%
! ATTTTTAAATCCACCCGTTT+TGG - chr4_3:36171689-36171708 Msa0639630:intron 30.0%
ATTGATCATTCCATTTCATC+GGG + chr4_3:36171781-36171800 None:intergenic 30.0%
! GCTCAATTTTGCAAAAAAAG+GGG - chr4_3:36172556-36172575 Msa0639630:intron 30.0%
ATAATAGGAATCTTTGACCT+AGG + chr4_3:36172651-36172670 None:intergenic 30.0%
GTCAAAGATTCCTATTATGT+TGG - chr4_3:36172653-36172672 Msa0639630:intron 30.0%
ATTTGCGAATCCAACATAAT+AGG + chr4_3:36172666-36172685 None:intergenic 30.0%
TGCTTGGACAAATTGAAATA+TGG - chr4_3:36172806-36172825 Msa0639630:intron 30.0%
! ACAATTTGAGTTAAGGATAG+TGG + chr4_3:36172919-36172938 None:intergenic 30.0%
! ATTCTGCACAATTTGAGTTA+AGG + chr4_3:36172926-36172945 None:intergenic 30.0%
TTAAAAGTAGAGTGGAATCA+GGG + chr4_3:36172966-36172985 None:intergenic 30.0%
CATTACTCTTAAAAGTAGAG+TGG + chr4_3:36172974-36172993 None:intergenic 30.0%
TTTAAGAGTAATGAGAGTCA+TGG - chr4_3:36172981-36173000 Msa0639630:intron 30.0%
!!! ATGTCATTTTTGTGTCTTGT+AGG + chr4_3:36173086-36173105 None:intergenic 30.0%
ACAAGACACAAAAATGACAT+TGG - chr4_3:36173086-36173105 Msa0639630:intron 30.0%
! CATGAACAATTTGAAATGAC+GGG - chr4_3:36173222-36173241 Msa0639630:intron 30.0%
! ATGAACAATTTGAAATGACG+GGG - chr4_3:36173223-36173242 Msa0639630:intron 30.0%
TTATTGCTGGATACAAAGAT+GGG - chr4_3:36173316-36173335 Msa0639630:intron 30.0%
CATCAACCAAAGACTTAATT+TGG + chr4_3:36173347-36173366 None:intergenic 30.0%
! ATTAAGTCTTTGGTTGATGT+TGG - chr4_3:36173348-36173367 Msa0639630:intron 30.0%
AAGTTAATAGCTTGAATGTG+AGG + chr4_3:36173417-36173436 None:intergenic 30.0%
TAAATGGTTCATTTCCTTCT+GGG + chr4_3:36173791-36173810 None:intergenic 30.0%
AAATACTTATTCAACGAGAC+AGG - chr4_3:36173888-36173907 Msa0639630:intron 30.0%
!!! TTTTGATGATGTTGTAACGA+GGG + chr4_3:36173917-36173936 None:intergenic 30.0%
!!! ATTTTGATGATGTTGTAACG+AGG + chr4_3:36173918-36173937 None:intergenic 30.0%
ATCTTCCATGAATTTAGACT+GGG + chr4_3:36173971-36173990 None:intergenic 30.0%
!!! ACTTGGAGTTTTGTTATCTA+AGG - chr4_3:36174055-36174074 Msa0639630:intron 30.0%
GGAATTGTGTAATTCAAGTG+AGG + chr4_3:36169043-36169062 None:intergenic 35.0%
GAACATTATACAAACTGGGA+AGG + chr4_3:36169410-36169429 None:intergenic 35.0%
GTATAATGTTCAGTTCGGAT+TGG - chr4_3:36169419-36169438 Msa0639630:CDS 35.0%
!!! GGAATCTTTTTTTCCAACTG+TGG - chr4_3:36169473-36169492 Msa0639630:CDS 35.0%
GAATTAATTACAGCCACAGT+TGG + chr4_3:36169489-36169508 None:intergenic 35.0%
! AGACACACTAATGGATCATA+TGG - chr4_3:36169756-36169775 Msa0639630:intron 35.0%
CGGTATTTAACTACAGTTGA+GGG + chr4_3:36169933-36169952 None:intergenic 35.0%
! TTTTTCATATCACGTGTGGA+TGG + chr4_3:36170063-36170082 None:intergenic 35.0%
TCCACACGTGATATGAAAAA+TGG - chr4_3:36170063-36170082 Msa0639630:CDS 35.0%
!! TCCATTTTTCATATCACGTG+TGG + chr4_3:36170067-36170086 None:intergenic 35.0%
TTGTGCACATTAGACAATTG+TGG + chr4_3:36170542-36170561 None:intergenic 35.0%
CATTAGCATGTTTGATTAGC+CGG - chr4_3:36171340-36171359 Msa0639630:intron 35.0%
AATATGAGTCCCACATATAG+TGG + chr4_3:36172311-36172330 None:intergenic 35.0%
CACATTATTGTGGGTCATTT+CGG + chr4_3:36172339-36172358 None:intergenic 35.0%
! ACTTTGGAGACATCAAGAAA+AGG - chr4_3:36172401-36172420 Msa0639630:intron 35.0%
ATATCTTTAGGTGTTTGCCT+AGG - chr4_3:36172631-36172650 Msa0639630:intron 35.0%
GAAGAAGAAGAATCATTGCT+TGG - chr4_3:36172790-36172809 Msa0639630:intron 35.0%
GCCATAACGGTCTATAATAT+CGG + chr4_3:36172893-36172912 None:intergenic 35.0%
TAAAAGTAGAGTGGAATCAG+GGG + chr4_3:36172965-36172984 None:intergenic 35.0%
CTTAAAAGTAGAGTGGAATC+AGG + chr4_3:36172967-36172986 None:intergenic 35.0%
AGTGCAGAAAAATCAGAAAC+CGG - chr4_3:36173021-36173040 Msa0639630:intron 35.0%
TGATTCTCTAGCAACAACAT+TGG + chr4_3:36173114-36173133 None:intergenic 35.0%
TAGCAGGGTTCAAATGAAAA+GGG + chr4_3:36173137-36173156 None:intergenic 35.0%
TTAGCAGGGTTCAAATGAAA+AGG + chr4_3:36173138-36173157 None:intergenic 35.0%
AAAATGGCACTGCTTTCTTT+AGG - chr4_3:36173190-36173209 Msa0639630:intron 35.0%
!! TACAATGACTTGTTCAACCA+AGG - chr4_3:36173258-36173277 Msa0639630:intron 35.0%
GTTATTGCTGGATACAAAGA+TGG - chr4_3:36173315-36173334 Msa0639630:intron 35.0%
! AGGATAAGCTCTAACAATCT+CGG + chr4_3:36173397-36173416 None:intergenic 35.0%
!! TAACTTTGATTTGCCTCATG+TGG - chr4_3:36173431-36173450 Msa0639630:intron 35.0%
GGTGATACCATCAAAATTAG+GGG + chr4_3:36173466-36173485 None:intergenic 35.0%
GGGTGATACCATCAAAATTA+GGG + chr4_3:36173467-36173486 None:intergenic 35.0%
TGGGTGATACCATCAAAATT+AGG + chr4_3:36173468-36173487 None:intergenic 35.0%
ATGTAAATAGCATCAGCACT+AGG + chr4_3:36173519-36173538 None:intergenic 35.0%
! TGCTGATGCTATTTACATGA+AGG - chr4_3:36173521-36173540 Msa0639630:intron 35.0%
AATACCAGAGAAAACAGGAA+AGG - chr4_3:36173740-36173759 Msa0639630:intron 35.0%
GATCATTGTGGATCATGTAT+TGG - chr4_3:36173764-36173783 Msa0639630:intron 35.0%
GTAAATGGTTCATTTCCTTC+TGG + chr4_3:36173792-36173811 None:intergenic 35.0%
AAGAAAGAACTGAAGAGAAC+TGG - chr4_3:36173865-36173884 Msa0639630:intron 35.0%
CATCTTCCATGAATTTAGAC+TGG + chr4_3:36173972-36173991 None:intergenic 35.0%
AGGAAAAAGGGAAGAAAATG+TGG + chr4_3:36174264-36174283 None:intergenic 35.0%
AGAACAGTCTCCATGTTCTT+TGG + chr4_3:36169064-36169083 None:intergenic 40.0%
TCTATATCTACGCACCTTGA+AGG + chr4_3:36169110-36169129 None:intergenic 40.0%
! TGATGTTCCAGTGGCTTTTA+TGG - chr4_3:36169361-36169380 Msa0639630:three_prime_UTR 40.0%
TTATACAAACTGGGAAGGCA+GGG + chr4_3:36169405-36169424 None:intergenic 40.0%
ATTATACAAACTGGGAAGGC+AGG + chr4_3:36169406-36169425 None:intergenic 40.0%
TTGGGAAACTCATCAGGAAA+TGG - chr4_3:36169452-36169471 Msa0639630:CDS 40.0%
GCGGTATTTAACTACAGTTG+AGG + chr4_3:36169934-36169953 None:intergenic 40.0%
! CAATTGTGGTGCTAACTCAA+TGG + chr4_3:36170528-36170547 None:intergenic 40.0%
AGGGAGATAAAATCCATGAG+TGG + chr4_3:36171669-36171688 None:intergenic 40.0%
TGACATACAACCCGATGAAA+TGG - chr4_3:36171768-36171787 Msa0639630:intron 40.0%
TTCCACGACGAGGTAAAAAT+AGG - chr4_3:36172025-36172044 Msa0639630:intron 40.0%
TCCACGACGAGGTAAAAATA+GGG - chr4_3:36172026-36172045 Msa0639630:intron 40.0%
TATGAGTCCACCACTATATG+TGG - chr4_3:36172298-36172317 Msa0639630:intron 40.0%
ATGAGTCCACCACTATATGT+GGG - chr4_3:36172299-36172318 Msa0639630:intron 40.0%
AAAGGGGAATAAACAGTGTC+TGG - chr4_3:36172572-36172591 Msa0639630:intron 40.0%
!!! TTTTGCTCTAAAAGCTGTCG+TGG - chr4_3:36172855-36172874 Msa0639630:intron 40.0%
GCCGATATTATAGACCGTTA+TGG - chr4_3:36172889-36172908 Msa0639630:intron 40.0%
! AGGATAGTGGTTTGCCATAA+CGG + chr4_3:36172906-36172925 None:intergenic 40.0%
GTGCAGAAAAATCAGAAACC+GGG - chr4_3:36173022-36173041 Msa0639630:intron 40.0%
TGCAGAAAAATCAGAAACCG+GGG - chr4_3:36173023-36173042 Msa0639630:intron 40.0%
ACTGCTTTCTTTAGGTGTCA+TGG - chr4_3:36173198-36173217 Msa0639630:intron 40.0%
! ACAATTTGAAATGACGGGGT+TGG - chr4_3:36173227-36173246 Msa0639630:intron 40.0%
!! TGACTTGTTCAACCAAGGTA+TGG - chr4_3:36173263-36173282 Msa0639630:intron 40.0%
! AAGTCTTTGGTTGATGTTGG+CGG - chr4_3:36173351-36173370 Msa0639630:intron 40.0%
TTTGCCTCATGTGGTTTCAA+CGG - chr4_3:36173440-36173459 Msa0639630:intron 40.0%
! TTTGATGGTATCACCCATGT+TGG - chr4_3:36173471-36173490 Msa0639630:intron 40.0%
AAACATGTCTCCTCCAACAT+GGG + chr4_3:36173487-36173506 None:intergenic 40.0%
TGACCTTATCTTTGGGTGAA+TGG - chr4_3:36173652-36173671 Msa0639630:intron 40.0%
AAGGCAATACCAGAGAAAAC+AGG - chr4_3:36173735-36173754 Msa0639630:intron 40.0%
! ATCACCTTTCCTGTTTTCTC+TGG + chr4_3:36173747-36173766 None:intergenic 40.0%
AACAGGAAAGGTGATCATTG+TGG - chr4_3:36173752-36173771 Msa0639630:intron 40.0%
AATGAACCATTTACCGACAC+TGG - chr4_3:36173798-36173817 Msa0639630:intron 40.0%
ATGAACCATTTACCGACACT+GGG - chr4_3:36173799-36173818 Msa0639630:intron 40.0%
GCATTCCCAGTCTAAATTCA+TGG - chr4_3:36173963-36173982 Msa0639630:intron 40.0%
ATGGAAGATGACGAGTTTGT+TGG - chr4_3:36173982-36174001 Msa0639630:intron 40.0%
TTCGTATGTGTTGTGTTGTG+TGG - chr4_3:36174028-36174047 Msa0639630:intron 40.0%
! TTGTGTTGTGTGGCTTTACT+TGG - chr4_3:36174038-36174057 Msa0639630:intron 40.0%
! CATGAATCATAGCTAGCTCT+AGG + chr4_3:36174130-36174149 None:intergenic 40.0%
AGCTAGCTATGATTCATGCA+TGG - chr4_3:36174132-36174151 Msa0639630:intron 40.0%
GCTAGCTATGATTCATGCAT+GGG - chr4_3:36174133-36174152 Msa0639630:intron 40.0%
CTAGCTATGATTCATGCATG+GGG - chr4_3:36174134-36174153 Msa0639630:intron 40.0%
TAGCTATGATTCATGCATGG+GGG - chr4_3:36174135-36174154 Msa0639630:intron 40.0%
TGTAATTCAAGTGAGGGGTG+AGG + chr4_3:36169036-36169055 None:intergenic 45.0%
! GTTCAGTTCGGATTGGACTA+TGG - chr4_3:36169426-36169445 Msa0639630:CDS 45.0%
! TCGGATTGGACTATGGAGTT+TGG - chr4_3:36169433-36169452 Msa0639630:CDS 45.0%
! CGGATTGGACTATGGAGTTT+GGG - chr4_3:36169434-36169453 Msa0639630:CDS 45.0%
TGGAGTTTGGGAAACTCATC+AGG - chr4_3:36169446-36169465 Msa0639630:CDS 45.0%
CACAAATGGCTCCACTTATG+TGG - chr4_3:36169728-36169747 Msa0639630:intron 45.0%
ATGGCTCCACTTATGTGGTT+TGG - chr4_3:36169733-36169752 Msa0639630:intron 45.0%
GTGTCTCCAAACCACATAAG+TGG + chr4_3:36169742-36169761 None:intergenic 45.0%
! GTGGTTTGGAGACACACTAA+TGG - chr4_3:36169747-36169766 Msa0639630:intron 45.0%
TTACTAATGTTGTGCGTCGC+AGG - chr4_3:36171547-36171566 Msa0639630:intron 45.0%
ATAAGTGGGAGGGACCAAAA+CGG + chr4_3:36171706-36171725 None:intergenic 45.0%
GAAAGATCAATTCCACGACG+AGG - chr4_3:36172015-36172034 Msa0639630:intron 45.0%
CCACGACGAGGTAAAAATAG+GGG - chr4_3:36172027-36172046 Msa0639630:intron 45.0%
CACGACGAGGTAAAAATAGG+GGG - chr4_3:36172028-36172047 Msa0639630:intron 45.0%
ATGAGTCCCACATATAGTGG+TGG + chr4_3:36172308-36172327 None:intergenic 45.0%
GAAACCGGGGAAATTCTCTA+CGG - chr4_3:36173036-36173055 Msa0639630:intron 45.0%
GCTTGACACGTGCATCAAAA+TGG - chr4_3:36173058-36173077 Msa0639630:intron 45.0%
! AGTCTTTGGTTGATGTTGGC+GGG - chr4_3:36173352-36173371 Msa0639630:intron 45.0%
! TCAACGGCCCCTAATTTTGA+TGG - chr4_3:36173456-36173475 Msa0639630:intron 45.0%
CAAACATGTCTCCTCCAACA+TGG + chr4_3:36173488-36173507 None:intergenic 45.0%
CTGCCATTCACCCAAAGATA+AGG + chr4_3:36173658-36173677 None:intergenic 45.0%
TATCTTTGGGTGAATGGCAG+TGG - chr4_3:36173658-36173677 Msa0639630:intron 45.0%
GATCATGTATTGGACCCAGA+AGG - chr4_3:36173774-36173793 Msa0639630:intron 45.0%
GTCAAATGCTATCCCAGTGT+CGG + chr4_3:36173814-36173833 None:intergenic 45.0%
!! GAATCATAGCTAGCTCTAGG+TGG + chr4_3:36174127-36174146 None:intergenic 45.0%
AGCTATGATTCATGCATGGG+GGG - chr4_3:36174136-36174155 Msa0639630:intron 45.0%
CTGCTATCTGATCTGCTGAT+GGG + chr4_3:36174173-36174192 None:intergenic 45.0%
TCTGCTATCTGATCTGCTGA+TGG + chr4_3:36174174-36174193 None:intergenic 45.0%
!! ATTAATTTATGATAAAAAAA+AGG + chr4_3:36172092-36172111 None:intergenic 5.0%
!!! AATATAAGTAAATTTTAATA+TGG - chr4_3:36172703-36172722 Msa0639630:intron 5.0%
!! AATATAAAATTAAAGAAATT+GGG - chr4_3:36174317-36174336 Msa0639630:five_prime_UTR 5.0%
!! CAGGGTTAGTATTGGTCCAG+TGG + chr4_3:36169387-36169406 None:intergenic 50.0%
! TGGGAAGGCAGGGTTAGTAT+TGG + chr4_3:36169395-36169414 None:intergenic 50.0%
CTAGCTGAGGTTCGTGTTCA+TGG - chr4_3:36171523-36171542 Msa0639630:intron 50.0%
TAAGTGGGAGGGACCAAAAC+GGG + chr4_3:36171705-36171724 None:intergenic 50.0%
!!! CCCCTATTTTTACCTCGTCG+TGG + chr4_3:36172030-36172049 None:intergenic 50.0%
TATTGACCAGGGTGTGAGCA+AGG - chr4_3:36172768-36172787 Msa0639630:intron 50.0%
AGTAGAGTGGAATCAGGGGA+AGG + chr4_3:36172961-36172980 None:intergenic 50.0%
CAAGCCGTAGAGAATTTCCC+CGG + chr4_3:36173043-36173062 None:intergenic 50.0%
TAGCGGTGCAAACCATACCT+TGG + chr4_3:36173278-36173297 None:intergenic 50.0%
CACCGCTAGAATTGTGTCGA+GGG - chr4_3:36173290-36173309 Msa0639630:intron 50.0%
AGCCCTCGACACAATTCTAG+CGG + chr4_3:36173295-36173314 None:intergenic 50.0%
! GTCTTTGGTTGATGTTGGCG+GGG - chr4_3:36173353-36173372 Msa0639630:intron 50.0%
! TCTTTGGTTGATGTTGGCGG+GGG - chr4_3:36173354-36173373 Msa0639630:intron 50.0%
GATGGTATCACCCATGTTGG+AGG - chr4_3:36173474-36173493 Msa0639630:intron 50.0%
! GGCAGTGGATTCTTCATGAC+TGG - chr4_3:36173673-36173692 Msa0639630:intron 50.0%
!! GCTATCCCAGTGTCGGTAAA+TGG + chr4_3:36173807-36173826 None:intergenic 50.0%
! ATGTTGCTTGCTCACAACGC+TGG - chr4_3:36173837-36173856 Msa0639630:intron 50.0%
TGCTCTGCCATGCATCATTG+AGG - chr4_3:36173941-36173960 Msa0639630:intron 50.0%
GGGAATGCCTCAATGATGCA+TGG + chr4_3:36173951-36173970 None:intergenic 50.0%
TATGATTCATGCATGGGGGG+AGG - chr4_3:36174139-36174158 Msa0639630:intron 50.0%
GGCAGAAGGTGGTGAGTGTT+TGG + chr4_3:36169089-36169108 None:intergenic 55.0%
CTCACCACCTTCTGCCTTCA+AGG - chr4_3:36169093-36169112 Msa0639630:three_prime_UTR 55.0%
CTACGCACCTTGAAGGCAGA+AGG + chr4_3:36169103-36169122 None:intergenic 55.0%
CCAGTGGCCATAAAAGCCAC+TGG + chr4_3:36169371-36169390 None:intergenic 55.0%
! CCAGTGGCTTTTATGGCCAC+TGG - chr4_3:36169368-36169387 Msa0639630:three_prime_UTR 55.0%
CTTCTTCCTTGCTCACACCC+TGG + chr4_3:36172777-36172796 None:intergenic 55.0%
GCACCGCTAGAATTGTGTCG+AGG - chr4_3:36173289-36173308 Msa0639630:intron 55.0%
GTGTCGAGGGCTGTTATTGC+TGG - chr4_3:36173303-36173322 Msa0639630:intron 55.0%
! GTTGATGTTGGCGGGGGTAT+CGG - chr4_3:36173360-36173379 Msa0639630:intron 55.0%
TTGCTTGCTCACAACGCTGG+TGG - chr4_3:36173840-36173859 Msa0639630:intron 55.0%
CGCACCTTGAAGGCAGAAGG+TGG + chr4_3:36169100-36169119 None:intergenic 60.0%
GGGGCCGTTGAAACCACATG+AGG + chr4_3:36173447-36173466 None:intergenic 60.0%
! CATGCATGGGGGGAGGCTTT+TGG - chr4_3:36174146-36174165 Msa0639630:intron 60.0%
GTGGGAGGGACCAAAACGGG+TGG + chr4_3:36171702-36171721 None:intergenic 65.0%
!! GATGTTGGCGGGGGTATCGG+AGG - chr4_3:36173363-36173382 Msa0639630:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 36169033 36174347 36169033 ID=Msa0639630;Name=Msa0639630
chr4_3 mRNA 36169033 36174347 36169033 ID=Msa0639630-mRNA-1;Parent=Msa0639630;Name=Msa0639630-mRNA-1;_AED=0.10;_eAED=0.10;_QI=37|1|1|1|1|1|3|370|369
chr4_3 exon 36169033 36169702 36169033 ID=Msa0639630-mRNA-1:exon:8380;Parent=Msa0639630-mRNA-1
chr4_3 exon 36169838 36170602 36169838 ID=Msa0639630-mRNA-1:exon:8379;Parent=Msa0639630-mRNA-1
chr4_3 exon 36174266 36174347 36174266 ID=Msa0639630-mRNA-1:exon:8378;Parent=Msa0639630-mRNA-1
chr4_3 five_prime_UTR 36174311 36174347 36174311 ID=Msa0639630-mRNA-1:five_prime_utr;Parent=Msa0639630-mRNA-1
chr4_3 CDS 36174266 36174310 36174266 ID=Msa0639630-mRNA-1:cds;Parent=Msa0639630-mRNA-1
chr4_3 CDS 36169838 36170602 36169838 ID=Msa0639630-mRNA-1:cds;Parent=Msa0639630-mRNA-1
chr4_3 CDS 36169403 36169702 36169403 ID=Msa0639630-mRNA-1:cds;Parent=Msa0639630-mRNA-1
chr4_3 three_prime_UTR 36169033 36169402 36169033 ID=Msa0639630-mRNA-1:three_prime_utr;Parent=Msa0639630-mRNA-1
Gene Sequence

>Msa0639630

ATGGAGACTGTTCTTTCCAAACACTCACCACCTTCTGCCTTCAAGGGTGTGAGCAAGGAAGAAGAAGAATCATTGCTTGGACAAATTGAAATATGGAAATACATGACACAATTCACAGACTCTTTTGCTCTAAAAGCTGTCGTGGAGCTACGCATAGCCGATATTATAGACCGTTATGGCAAACCACTATCCTTAACTCAAATTGTGCAGAATCTTGAAGATGCACCTTCCCCTGATTCCACTCTACTTTTAAGAGTAATGAGAGTCATGGTTCGTAGAAAGATTTTCAGTGCAGAAAAATCAGAAACCGGGGAAATTCTCTACGGCTTGACACGTGCATCAAAATGGATCCTACAAGACACAAAAATGACATTGGCACCAATGTTGTTGCTAGAGAATCACCCTTTTCATTTGAACCCTGCTAACTTTATTAGTGAAATTATAAAAGAAGGCACAAAAAATGGCACTGCTTTCTTTAGGTGTCATGGTCATGAACAATTTGAAATGACGGGGTTGGACTCGAAATACAATGACTTGTTCAACCAAGGTATGGTTTGCACCGCTAGAATTGTGTCGAGGGCTGTTATTGCTGGATACAAAGATGGGTTTAACCAAATTAAGTCTTTGGTTGATGTTGGCGGGGGTATCGGAGGATCTCTCTCCGAGATTGTTAGAGCTTATCCTCACATTCAAGCTATTAACTTTGATTTGCCTCATGTGGTTTCAACGGCCCCTAATTTTGATGGTATCACCCATGTTGGAGGAGACATGTTTGTGTCAGTTCCTAGTGCTGATGCTATTTACATGAAGTGGATTCTTCATGACTGGAGCGACGACCATTGCATAAAGATATTGAAGAATTGTAGAAAGGCAATACCAGAGAAAACAGGAAAGGTGATCATTGTGGATCATGTATTGGACCCAGAAGGAAATGAACCATTTACCGACACTGGGATAGCATTTGACATGATGTTGCTTGCTCACAACGCTGGTGGTAAAGAAAGAACTGAAGAGAACTGGAAATACTTATTCAACGAGACAGGATTCCCTCGTTACAACATCATCAAAATCAATGCTCTGCCATGCATCATTGAGGCATTCCCAGTCTAA
Protein sequence

>Msa0639630

METVLSKHSPPSAFKGVSKEEEESLLGQIEIWKYMTQFTDSFALKAVVELRIADIIDRYGKPLSLTQIVQNLEDAPSPDSTLLLRVMRVMVRRKIFSAEKSETGEILYGLTRASKWILQDTKMTLAPMLLLENHPFHLNPANFISEIIKEGTKNGTAFFRCHGHEQFEMTGLDSKYNDLFNQGMVCTARIVSRAVIAGYKDGFNQIKSLVDVGGGIGGSLSEIVRAYPHIQAINFDLPHVVSTAPNFDGITHVGGDMFVSVPSADAIYMKWILHDWSDDHCIKILKNCRKAIPEKTGKVIIVDHVLDPEGNEPFTDTGIAFDMMLLAHNAGGKERTEENWKYLFNETGFPRYNIIKINALPCIIEAFPV*