AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0542330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0542330 MtrunA17_Chr4g0021981 93.767 369 1 2 1 347 1 369 0.0 703
Msa0542330 MtrunA17_Chr4g0022021 83.469 369 39 2 1 347 1 369 0.0 636
Msa0542330 MtrunA17_Chr5g0432251 39.255 349 182 7 25 346 14 359 7.58e-73 230
Msa0542330 MtrunA17_Chr3g0121301 37.059 340 181 8 31 344 27 359 4.70e-71 225
Msa0542330 MtrunA17_Chr5g0432261 39.879 331 177 8 25 346 10 327 9.71e-69 218
Msa0542330 MtrunA17_Chr5g0432301 36.390 349 190 7 25 345 15 359 5.67e-67 215
Msa0542330 MtrunA17_Chr5g0432241 36.288 361 195 8 18 346 3 360 2.00e-63 206
Msa0542330 MtrunA17_Chr7g0276401 38.793 348 169 12 15 327 18 356 3.81e-62 202
Msa0542330 MtrunA17_Chr7g0276411 35.756 344 176 12 22 327 7 343 1.73e-60 198
Msa0542330 MtrunA17_Chr5g0432211 35.417 336 199 7 25 346 14 345 5.34e-59 194
Msa0542330 MtrunA17_Chr1g0188391 35.674 356 197 12 20 346 9 361 1.86e-58 192
Msa0542330 MtrunA17_Chr3g0128011 34.036 332 183 10 44 345 90 415 7.33e-57 190
Msa0542330 MtrunA17_Chr8g0345851 44.309 246 110 7 103 327 32 271 4.65e-56 184
Msa0542330 MtrunA17_Chr5g0448091 36.391 327 158 12 44 332 35 349 5.50e-56 186
Msa0542330 MtrunA17_Chr4g0040621 34.473 351 193 9 25 346 27 369 1.01e-55 186
Msa0542330 MtrunA17_Chr8g0367491 36.257 342 173 14 34 336 33 368 2.92e-55 185
Msa0542330 MtrunA17_Chr7g0219161 35.965 342 187 8 18 332 7 343 5.24e-55 184
Msa0542330 MtrunA17_Chr7g0219141 32.011 378 204 8 1 346 1 357 2.87e-53 179
Msa0542330 MtrunA17_Chr7g0223241 33.333 339 196 8 28 343 16 347 3.56e-53 179
Msa0542330 MtrunA17_Chr4g0046361 31.044 364 217 8 13 346 2 361 5.28e-52 176
Msa0542330 MtrunA17_Chr8g0367441 34.384 349 185 12 16 327 17 358 1.02e-51 176
Msa0542330 MtrunA17_Chr7g0223231 32.164 342 206 7 23 343 11 347 2.18e-51 174
Msa0542330 MtrunA17_Chr4g0046531 32.853 347 208 7 23 346 374 718 3.51e-51 181
Msa0542330 MtrunA17_Chr4g0046531 32.277 347 208 7 23 345 12 355 1.60e-50 179
Msa0542330 MtrunA17_Chr4g0014641 33.333 363 210 9 14 346 3 363 1.14e-50 172
Msa0542330 MtrunA17_Chr1g0188371 34.030 335 190 11 20 326 9 340 3.85e-49 169
Msa0542330 MtrunA17_Chr8g0367501 33.724 341 184 12 20 327 13 344 9.52e-49 169
Msa0542330 MtrunA17_Chr8g0367451 33.811 349 190 12 19 331 18 361 1.12e-48 167
Msa0542330 MtrunA17_Chr4g0046341 33.060 366 210 8 13 346 2 364 5.68e-48 165
Msa0542330 MtrunA17_Chr4g0014561 34.270 356 204 8 20 346 9 363 1.89e-47 164
Msa0542330 MtrunA17_Chr4g0014681 33.989 356 205 8 20 346 9 363 1.04e-46 162
Msa0542330 MtrunA17_Chr8g0367381 34.713 314 181 11 19 314 19 326 2.78e-45 157
Msa0542330 MtrunA17_Chr3g0085211 34.062 320 175 13 44 333 43 356 9.52e-45 157
Msa0542330 MtrunA17_Chr4g0014661 32.964 361 208 10 14 346 3 357 1.12e-43 154
Msa0542330 MtrunA17_Chr3g0130011 31.742 356 208 12 16 343 7 355 1.58e-43 154
Msa0542330 MtrunA17_Chr1g0163601 41.327 196 97 7 150 332 164 354 2.59e-43 153
Msa0542330 MtrunA17_Chr1g0163621 35.401 274 146 11 83 332 102 368 1.14e-42 152
Msa0542330 MtrunA17_Chr1g0163611 31.953 338 188 14 44 345 38 369 2.82e-42 150
Msa0542330 MtrunA17_Chr7g0218301 34.146 328 171 11 44 333 41 361 5.02e-42 150
Msa0542330 MtrunA17_Chr2g0314271 33.333 330 187 12 42 343 27 351 1.06e-41 149
Msa0542330 MtrunA17_Chr7g0218271 34.756 328 169 11 44 333 41 361 1.62e-41 149
Msa0542330 MtrunA17_Chr3g0085201 31.975 319 183 11 44 333 30 343 2.00e-41 148
Msa0542330 MtrunA17_Chr7g0218211 33.846 325 173 13 43 333 39 355 5.04e-41 147
Msa0542330 MtrunA17_Chr2g0307521 33.333 318 175 11 44 330 35 346 5.77e-41 147
Msa0542330 MtrunA17_Chr3g0130061 31.285 358 207 13 16 343 7 355 6.74e-41 147
Msa0542330 MtrunA17_Chr1g0200491 33.230 322 177 11 44 332 41 357 9.04e-41 147
Msa0542330 MtrunA17_Chr7g0218261 33.746 323 175 13 43 333 39 354 2.57e-40 145
Msa0542330 MtrunA17_Chr4g0014591 32.402 358 214 9 14 346 3 357 3.37e-40 145
Msa0542330 MtrunA17_Chr7g0218181 33.229 319 178 11 44 333 41 353 6.43e-40 144
Msa0542330 MtrunA17_Chr6g0482291 42.945 163 82 4 166 327 5 157 8.04e-38 133
Msa0542330 MtrunA17_Chr7g0218131 44.242 165 84 5 171 332 196 355 4.14e-37 137
Msa0542330 MtrunA17_Chr7g0219171 42.537 134 72 3 216 346 117 248 6.78e-30 114
Msa0542330 MtrunA17_Chr4g0014601 31.274 259 156 6 14 251 3 260 6.70e-27 107
Msa0542330 MtrunA17_Chr4g0011691 46.875 96 51 0 250 345 140 235 1.33e-26 105
Msa0542330 MtrunA17_Chr8g0367401 54.217 83 37 1 166 248 29 110 3.82e-22 90.9
Msa0542330 MtrunA17_Chr8g0367461 46.316 95 47 3 235 327 1 93 4.56e-20 84.3
Msa0542330 MtrunA17_Chr1g0170941 53.333 75 34 1 171 245 2 75 1.99e-19 81.6
Msa0542330 MtrunA17_Chr8g0367391 46.512 86 42 4 244 327 32 115 3.35e-17 77.4
Msa0542330 MtrunA17_Chr8g0367471 44.444 72 39 1 166 237 5 75 2.67e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0542330 AT5G54160.1 36.760 321 168 9 42 333 34 348 6.46e-62 202
Msa0542330 AT4G35160.1 32.597 362 201 9 22 345 24 380 3.11e-56 188
Msa0542330 AT1G77520.1 34.877 367 194 12 17 343 17 378 1.07e-55 186
Msa0542330 AT4G35150.1 31.378 341 190 8 22 345 10 323 6.49e-52 175
Msa0542330 AT1G51990.1 31.967 366 203 13 16 346 8 362 3.13e-50 172
Msa0542330 AT1G33030.1 35.625 320 169 12 44 332 23 336 2.09e-48 166
Msa0542330 AT1G51990.2 43.169 183 100 3 166 346 182 362 3.15e-48 166
Msa0542330 AT1G63140.2 34.916 358 194 12 11 333 15 368 3.32e-47 164
Msa0542330 AT1G63140.4 34.916 358 194 12 11 333 35 388 4.31e-47 164
Msa0542330 AT1G77530.1 34.511 368 196 12 16 343 16 378 5.39e-46 161
Msa0542330 AT3G53140.1 34.384 349 193 13 27 343 12 356 1.30e-45 159
Msa0542330 AT1G62900.1 47.093 172 87 3 164 333 23 192 3.29e-43 149
Msa0542330 AT5G53810.1 33.041 342 181 11 44 347 42 373 1.06e-42 152
Msa0542330 AT5G37170.2 38.350 206 112 6 150 343 29 231 9.50e-41 143
Msa0542330 AT5G37170.3 42.353 170 93 4 177 343 16 183 1.43e-40 141
Msa0542330 AT5G37170.1 38.350 206 112 6 150 343 129 331 5.06e-40 144
Msa0542330 AT1G21130.1 33.631 336 183 13 44 345 42 371 5.87e-39 142
Msa0542330 AT1G21100.1 34.030 335 183 12 44 345 42 371 1.41e-38 141
Msa0542330 AT1G76790.1 35.276 326 170 13 44 333 32 352 6.17e-38 139
Msa0542330 AT1G21120.1 31.642 335 191 13 44 345 42 371 5.12e-37 137
Msa0542330 AT1G21120.2 31.343 335 192 13 44 345 90 419 6.49e-37 137
Msa0542330 AT1G21110.1 30.746 335 194 13 44 345 42 371 3.16e-36 135
Msa0542330 AT1G33030.3 34.188 234 121 9 44 248 23 252 5.48e-24 99.8
Msa0542330 AT1G33030.2 34.188 234 121 9 44 248 23 252 5.56e-24 99.8
Msa0542330 AT1G63140.1 30.996 271 151 10 11 248 35 302 2.19e-19 87.8
Msa0542330 AT1G21130.2 29.237 236 133 10 44 248 42 274 7.93e-15 74.3

Find 185 sgRNAs with CRISPR-Local

Find 391 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCAACCAAAGACTTAATT+TGG 0.166048 4_1:+27100467 None:intergenic
CAATATAAAATTAAAGAAAT+TGG 0.177243 4_1:-27099495 Msa0542330:three_prime_UTR
AACTTTATGATTTGTTAAAA+AGG 0.201956 4_1:+27105180 None:intergenic
CTTCTGCCACATCATCATTT+TGG 0.219473 4_1:+27105372 None:intergenic
GTTACAAACCTCAAACTTAA+AGG 0.224806 4_1:-27105280 Msa0542330:five_prime_UTR
GTAAATGGTTCATTTCCTTC+TGG 0.225351 4_1:+27100022 None:intergenic
TGCTTGGACAAATTGAAATA+TGG 0.256837 4_1:-27101005 Msa0542330:CDS
AGTAAAGGGGATTGCTCTTT+AGG 0.258371 4_1:+27106340 None:intergenic
AATAATTTCACTACAATATA+GGG 0.265752 4_1:+27105907 None:intergenic
TAATGGCATGGTGCCATTAA+TGG 0.266431 4_1:-27105630 Msa0542330:five_prime_UTR
GTTTAACCAAATTAAGTCTT+TGG 0.272207 4_1:-27100473 Msa0542330:CDS
CAATACTTGGGTGCCATTAA+TGG 0.275774 4_1:-27105737 Msa0542330:five_prime_UTR
CAATAATTTCACTACAATAT+AGG 0.281093 4_1:+27105906 None:intergenic
CTATATTGTAGTGAAATTAT+TGG 0.282100 4_1:-27105905 Msa0542330:five_prime_UTR
TAATGGCACGGTGCCATTAA+TGG 0.294339 4_1:+27105724 None:intergenic
TTTCCTTTACCACTACAATT+TGG 0.295175 4_1:+27105048 None:intergenic
TGGGTGATACCATCAAAATT+AGG 0.296621 4_1:+27100346 None:intergenic
TTATCATGCACAATGGATTA+AGG 0.298175 4_1:+27106031 None:intergenic
TAGCACATGTGTGCCATATA+TGG 0.303651 4_1:+27105872 None:intergenic
CCAATCCAACACACCTGAAT+TGG 0.303915 4_1:-27104837 Msa0542330:five_prime_UTR
GCTATCCCAGTGTCGGTAAA+TGG 0.307296 4_1:+27100007 None:intergenic
CTCACCACCTTCTGCCTTCA+AGG 0.309125 4_1:-27104725 Msa0542330:intron
AAAATGGCACTGCTTTCTTT+AGG 0.315917 4_1:-27100621 Msa0542330:CDS
GGGTGATACCATCAAAATTA+GGG 0.318382 4_1:+27100347 None:intergenic
GCAACTATGTAGATTTGTTT+TGG 0.320400 4_1:+27106252 None:intergenic
GCTTGACACGTGCATCAAAA+TGG 0.327202 4_1:-27100753 Msa0542330:CDS
TGGCACTTTGGTGCCATTAA+TGG 0.330106 4_1:+27105617 None:intergenic
TAAATGGTTCATTTCCTTCT+GGG 0.333897 4_1:+27100023 None:intergenic
TTGTGTTGTGTGGCTTTACT+TGG 0.351030 4_1:-27099773 Msa0542330:three_prime_UTR
CCAATTCAGGTGTGTTGGAT+TGG 0.351528 4_1:+27104837 None:intergenic
ATATATAGTTAAAGTGTGTT+TGG 0.356196 4_1:+27106198 None:intergenic
TGGAGGTCTATGTCCATATA+TGG 0.356655 4_1:-27105885 Msa0542330:five_prime_UTR
CATGTTATCATGTGAGTAAA+GGG 0.359886 4_1:+27106326 None:intergenic
AAGGCTAACTTATGTCCTAT+AGG 0.363939 4_1:-27105762 Msa0542330:five_prime_UTR
CTTAAAAGTAGAGTGGAATC+AGG 0.364299 4_1:+27100847 None:intergenic
ATTCTGCACAATTTGAGTTA+AGG 0.365186 4_1:+27100888 None:intergenic
GCAATTAGAGAGTTAATTTG+AGG 0.370896 4_1:+27105135 None:intergenic
ACCATGGGTCTTTAAGTTTG+TGG 0.374888 4_1:+27105212 None:intergenic
GGCAGAAGGTGGTGAGTGTT+TGG 0.386189 4_1:+27104732 None:intergenic
ATATAACTTCTTTAAGTTTG+AGG 0.389465 4_1:-27105482 Msa0542330:five_prime_UTR
GTTTGAGGTTTGTAATAGAT+TGG 0.395060 4_1:-27105518 Msa0542330:five_prime_UTR
GTGTCGAGGGCTGTTATTGC+TGG 0.396054 4_1:-27100508 Msa0542330:CDS
TGTCCTATAGGGACAATACT+TGG 0.397138 4_1:-27105750 Msa0542330:five_prime_UTR
CATTACATCCTGGCCATTGA+TGG 0.398345 4_1:-27105706 Msa0542330:five_prime_UTR
TATATAGTTAAAGTGTGTTT+GGG 0.405418 4_1:+27106199 None:intergenic
ACAATTTGAGTTAAGGATAG+TGG 0.413559 4_1:+27100895 None:intergenic
ATTAGTGAAATTATAAAAGA+AGG 0.414681 4_1:-27100649 Msa0542330:CDS
ACATAAGTCCTTTAAGTTTG+AGG 0.415697 4_1:+27105272 None:intergenic
AGGGAAGAAAGCCTTTGTTT+TGG 0.416945 4_1:+27104812 None:intergenic
GTGTGTGTGATGTGTGTGTT+GGG 0.422728 4_1:+27105681 None:intergenic
AAGAAAGAACTGAAGAGAAC+TGG 0.424963 4_1:-27099946 Msa0542330:CDS
AGGCTAACTTATGTCCTATA+GGG 0.426075 4_1:-27105761 Msa0542330:five_prime_UTR
ATTTGAGGTAAATCTAAAGT+TGG 0.426459 4_1:+27105150 None:intergenic
GCCATAACGGTCTATAATAT+CGG 0.426995 4_1:+27100921 None:intergenic
TTAGCAGGGTTCAAATGAAA+AGG 0.429287 4_1:+27100676 None:intergenic
CATCTTCCATGAATTTAGAC+TGG 0.429361 4_1:+27099842 None:intergenic
TGGCACCATGCCATTAGATC+AGG 0.431306 4_1:+27105637 None:intergenic
ATAATTATTTAATCACCTAC+TGG 0.431910 4_1:+27106105 None:intergenic
AATATAAAATTAAAGAAATT+GGG 0.434737 4_1:-27099494 Msa0542330:three_prime_UTR
ATTTCACTAATAAAGTTAGC+AGG 0.435103 4_1:+27100661 None:intergenic
GTTATTGCTGGATACAAAGA+TGG 0.437111 4_1:-27100496 Msa0542330:CDS
ATGGAAGATGACGAGTTTGT+TGG 0.440293 4_1:-27099829 Msa0542330:three_prime_UTR
TTTGCAAGTTGCAAATTCAA+TGG 0.445615 4_1:+27104860 None:intergenic
AGTCTTTGGTTGATGTTGGC+GGG 0.446010 4_1:-27100459 Msa0542330:CDS
GCATTCCCAGTCTAAATTCA+TGG 0.449506 4_1:-27099848 Msa0542330:exon
TTAGCATAGTGCATAACTAT+AGG 0.451127 4_1:+27105589 None:intergenic
CTATAGGACGGGTGGCACTT+TGG 0.454407 4_1:+27105605 None:intergenic
AATGTGTAGCCCTGATCTAA+TGG 0.460497 4_1:-27105647 Msa0542330:five_prime_UTR
TGTGTGTGTGATGTGTGTGT+TGG 0.462299 4_1:+27105680 None:intergenic
AAGTCTTTGGTTGATGTTGG+CGG 0.462461 4_1:-27100460 Msa0542330:CDS
CATGAACAATTTGAAATGAC+GGG 0.462928 4_1:-27100589 Msa0542330:CDS
AGGATAGTGGTTTGCCATAA+CGG 0.463766 4_1:+27100908 None:intergenic
CTAACGTGTCAATATTTAAA+CGG 0.464160 4_1:-27105852 Msa0542330:five_prime_UTR
ACTGCTTTCTTTAGGTGCCA+TGG 0.464272 4_1:-27100613 Msa0542330:CDS
TTCAAATTATGATACACAAA+AGG 0.466985 4_1:+27099725 None:intergenic
TGATTTCAAGTGAGGGGTGA+GGG 0.468537 4_1:+27104793 None:intergenic
GAACCAAATTGTAGTGGTAA+AGG 0.471280 4_1:-27105051 Msa0542330:five_prime_UTR
TCTATATCTACGCACCTTGA+AGG 0.472047 4_1:+27104711 None:intergenic
AAGGCAATACCAGAGAAAAC+AGG 0.476074 4_1:-27100076 Msa0542330:CDS
AATGGTTAATAAAGACGATA+AGG 0.478588 4_1:+27104878 None:intergenic
AATTAAAGAAATTGGGTCAT+GGG 0.478858 4_1:-27099487 Msa0542330:three_prime_UTR
TTTCACTACAATATAGGGAT+TGG 0.479860 4_1:+27105912 None:intergenic
TGGTTCCAATTCAGGTGTGT+TGG 0.483603 4_1:+27104832 None:intergenic
GCCGATATTATAGACCGTTA+TGG 0.483784 4_1:-27100922 Msa0542330:CDS
GGCAGTGGATTCTTCATGAC+TGG 0.484877 4_1:-27100138 Msa0542330:intron
TAACTTTGATTTGCCTCATG+TGG 0.490029 4_1:-27100380 Msa0542330:CDS
ATTAAGTCTTTGGTTGATGT+TGG 0.491660 4_1:-27100463 Msa0542330:CDS
ACATGTTATCATGTGAGTAA+AGG 0.493009 4_1:+27106325 None:intergenic
CATCAATGGCCAGGATGTAA+TGG 0.498439 4_1:+27105707 None:intergenic
AAACATGTCTCCTCCAACAT+GGG 0.498630 4_1:+27100327 None:intergenic
CACCCAAGTATTGTCCCTAT+AGG 0.498912 4_1:+27105747 None:intergenic
GTCTTTGGTTGATGTTGGCG+GGG 0.504180 4_1:-27100458 Msa0542330:CDS
ATGATTTCAAGTGAGGGGTG+AGG 0.506715 4_1:+27104792 None:intergenic
TTAAAAGTAGAGTGGAATCA+GGG 0.508759 4_1:+27100848 None:intergenic
GAAGAAGAAGAATCATTGCT+TGG 0.509681 4_1:-27101021 Msa0542330:CDS
TTTGATGGTATCACCCATGT+TGG 0.511129 4_1:-27100340 Msa0542330:CDS
TGTGTGTTGGGTGCCATCAA+TGG 0.513265 4_1:+27105693 None:intergenic
GATATTGAAGAATTGTAGAA+AGG 0.519416 4_1:-27100095 Msa0542330:CDS
AATGAACCATTTACCGACAC+TGG 0.520366 4_1:-27100013 Msa0542330:CDS
GATGGTATCACCCATGTTGG+AGG 0.521547 4_1:-27100337 Msa0542330:CDS
AGCTAGCTATGATTCATGCA+TGG 0.523703 4_1:-27099679 Msa0542330:three_prime_UTR
AAATTAAAGAAATTGGGTCA+TGG 0.525972 4_1:-27099488 Msa0542330:three_prime_UTR
GAATGAGATGATTTCAAGTG+AGG 0.530607 4_1:+27104785 None:intergenic
GATCATTGTGGATCATGTAT+TGG 0.533084 4_1:-27100047 Msa0542330:CDS
TCTTCAATATCTTTATGCAA+TGG 0.534210 4_1:+27100107 None:intergenic
CAAACATGTCTCCTCCAACA+TGG 0.536952 4_1:+27100326 None:intergenic
AAATACTTATTCAACGAGAC+AGG 0.536963 4_1:-27099923 Msa0542330:CDS
TTTGCCTCATGTGGTTTCAA+CGG 0.539222 4_1:-27100371 Msa0542330:CDS
GTTGGGTGCCATCAATGGCC+AGG 0.539441 4_1:+27105698 None:intergenic
TTTCACTAATAAAGTTAGCA+GGG 0.540307 4_1:+27100662 None:intergenic
GCTAGCTATGATTCATGCAT+GGG 0.540353 4_1:-27099678 Msa0542330:three_prime_UTR
CAATATAGGGATTGGTATGT+CGG 0.540408 4_1:+27105920 None:intergenic
TGATCTTGTTTATTTAGCAA+AGG 0.541047 4_1:-27105566 Msa0542330:five_prime_UTR
TATTGTAGTGAAATTATTGG+AGG 0.541537 4_1:-27105902 Msa0542330:five_prime_UTR
CAAGCCGTAGAGAATTTCCC+CGG 0.542265 4_1:+27100771 None:intergenic
TGCTGATGCTATTTACATGA+AGG 0.545789 4_1:-27100290 Msa0542330:intron
TAGCAGGGTTCAAATGAAAA+GGG 0.549937 4_1:+27100677 None:intergenic
CATGAATCATAGCTAGCTCT+AGG 0.551516 4_1:+27099684 None:intergenic
GGCACCGTGCCATTACATCC+TGG 0.551691 4_1:-27105716 Msa0542330:five_prime_UTR
AGGATAAGCTCTAACAATCT+CGG 0.552345 4_1:+27100417 None:intergenic
TCATGAACAATTTGAAATGA+CGG 0.554113 4_1:-27100590 Msa0542330:CDS
TTCGTATGTGTTGTGTTGTG+TGG 0.557358 4_1:-27099783 Msa0542330:three_prime_UTR
TTATTGCTGGATACAAAGAT+GGG 0.557554 4_1:-27100495 Msa0542330:CDS
AAAATTTATACTCTTCCAGT+AGG 0.559078 4_1:-27106120 Msa0542330:five_prime_UTR
TTTAAGAGTAATGAGAGTCA+TGG 0.559249 4_1:-27100830 Msa0542330:intron
TATTGACCAGGGTGTGAGCA+AGG 0.559868 4_1:-27101043 Msa0542330:intron
CTGCTATCTGATCTGCTGAT+GGG 0.562055 4_1:+27099641 None:intergenic
TTTCAAATTGTTCATGACCA+TGG 0.562712 4_1:+27100596 None:intergenic
ATCTTCCATGAATTTAGACT+GGG 0.572279 4_1:+27099843 None:intergenic
CACCGCTAGAATTGTGTCGA+GGG 0.576078 4_1:-27100521 Msa0542330:intron
CATTACTCTTAAAAGTAGAG+TGG 0.588009 4_1:+27100840 None:intergenic
TCTGCTATCTGATCTGCTGA+TGG 0.591530 4_1:+27099640 None:intergenic
AATGAGATGATTTCAAGTGA+GGG 0.592011 4_1:+27104786 None:intergenic
GTCCTATAGGGACAATACTT+GGG 0.593401 4_1:-27105749 Msa0542330:five_prime_UTR
GCACCGCTAGAATTGTGTCG+AGG 0.594031 4_1:-27100522 Msa0542330:intron
CATAGTGCATAACTATAGGA+CGG 0.594649 4_1:+27105593 None:intergenic
GGCACCATGCCATTAGATCA+GGG 0.595294 4_1:+27105638 None:intergenic
ATGTAAATAGCATCAGCACT+AGG 0.596076 4_1:+27100295 None:intergenic
GGGAAGATGGACATGGACAA+TGG 0.597707 4_1:+27106281 None:intergenic
ATAGTGCATAACTATAGGAC+GGG 0.601013 4_1:+27105594 None:intergenic
TGTGATTGATGAGTGTGTGG+TGG 0.601715 4_1:+27105000 None:intergenic
CAAAATGATGATGTGGCAGA+AGG 0.602463 4_1:-27105371 Msa0542330:five_prime_UTR
GTCAAATGCTATCCCAGTGT+CGG 0.602762 4_1:+27100000 None:intergenic
TCTTTGGTTGATGTTGGCGG+GGG 0.603652 4_1:-27100457 Msa0542330:CDS
GTTCTCAGGGAAGATGGACA+TGG 0.604205 4_1:+27106274 None:intergenic
CTACGCACCTTGAAGGCAGA+AGG 0.604702 4_1:+27104718 None:intergenic
AAAAGGTTAAGTTACACCAT+GGG 0.606738 4_1:+27105197 None:intergenic
TGCTCTGCCATGCATCATTG+AGG 0.607068 4_1:-27099870 Msa0542330:CDS
ATGTTGCTTGCTCACAACGC+TGG 0.609694 4_1:-27099974 Msa0542330:CDS
ATGAACCATTTACCGACACT+GGG 0.609768 4_1:-27100012 Msa0542330:CDS
AAGTTAATAGCTTGAATGTG+AGG 0.610156 4_1:+27100397 None:intergenic
AACAGGAAAGGTGATCATTG+TGG 0.615274 4_1:-27100059 Msa0542330:CDS
GAAACCGGGGAAATTCTCTA+CGG 0.620852 4_1:-27100775 Msa0542330:CDS
CGCACCTTGAAGGCAGAAGG+TGG 0.621755 4_1:+27104721 None:intergenic
ACCACAAACTTAAAGACCCA+TGG 0.625835 4_1:-27105213 Msa0542330:five_prime_UTR
AGCTATGATTCATGCATGGG+GGG 0.627479 4_1:-27099675 Msa0542330:three_prime_UTR
TTCTGCACTACAATGTAGTG+TGG 0.630656 4_1:+27105071 None:intergenic
ATGAGATGATTTCAAGTGAG+GGG 0.637669 4_1:+27104787 None:intergenic
TATTACTTCAATAATGCACA+TGG 0.640664 4_1:-27104971 Msa0542330:five_prime_UTR
TGTTAACCAAAATGATGATG+TGG 0.642089 4_1:-27105378 Msa0542330:five_prime_UTR
GTAAGATTTATCATGCACAA+TGG 0.646286 4_1:+27106024 None:intergenic
CTAGCTATGATTCATGCATG+GGG 0.649012 4_1:-27099677 Msa0542330:three_prime_UTR
TGATTCTCTAGCAACAACAT+TGG 0.649459 4_1:+27100700 None:intergenic
CTGAATTGGAACCAAAACAA+AGG 0.651322 4_1:-27104823 Msa0542330:five_prime_UTR
GATCATGTATTGGACCCAGA+AGG 0.652817 4_1:-27100037 Msa0542330:CDS
AGTGCAGAACCAAATTGTAG+TGG 0.658078 4_1:-27105057 Msa0542330:five_prime_UTR
GGGAATGCCTCAATGATGCA+TGG 0.663145 4_1:+27099863 None:intergenic
ATAAGGTGTGATGAAATATG+TGG 0.663189 4_1:+27104895 None:intergenic
TAAAAGTAGAGTGGAATCAG+GGG 0.667415 4_1:+27100849 None:intergenic
ATGTTATCATGTGAGTAAAG+GGG 0.667964 4_1:+27106327 None:intergenic
ATAAGTTATGACAAACCTTG+TGG 0.668198 4_1:+27105808 None:intergenic
AAATTGAAGATGTGACCACA+AGG 0.668325 4_1:-27105823 Msa0542330:five_prime_UTR
AGTAGAGTGGAATCAGGGGA+AGG 0.670234 4_1:+27100853 None:intergenic
AATACCAGAGAAAACAGGAA+AGG 0.671132 4_1:-27100071 Msa0542330:CDS
GTGCATAACTATAGGACGGG+TGG 0.671331 4_1:+27105597 None:intergenic
ATGGCCAGGATGTAATGGCA+CGG 0.674657 4_1:+27105712 None:intergenic
ATGAACAATTTGAAATGACG+GGG 0.676832 4_1:-27100588 Msa0542330:intron
TAATGTGATTGATGAGTGTG+TGG 0.677733 4_1:+27104997 None:intergenic
GGTGATACCATCAAAATTAG+GGG 0.681590 4_1:+27100348 None:intergenic
TTGCTTGCTCACAACGCTGG+TGG 0.684054 4_1:-27099971 Msa0542330:CDS
GAATCATAGCTAGCTCTAGG+TGG 0.688847 4_1:+27099687 None:intergenic
AAAACGTGGCAGATGGAGTG+TGG 0.696847 4_1:+27104935 None:intergenic
TAGCTATGATTCATGCATGG+GGG 0.705108 4_1:-27099676 Msa0542330:three_prime_UTR
GTAGCCCTGATCTAATGGCA+TGG 0.706566 4_1:-27105642 Msa0542330:five_prime_UTR
GGGGCCGTTGAAACCACATG+AGG 0.722984 4_1:+27100367 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATTTTTTTTGAAAG+GGG - chr4_1:27099651-27099670 Msa0542330:three_prime_UTR 10.0%
!!! ATTAGTCTTTTAAATTATTT+TGG - chr4_1:27100378-27100397 Msa0542330:CDS 10.0%
!! AAAAAAATTATAAATGTATC+TGG + chr4_1:27101335-27101354 None:intergenic 10.0%
!!! AATTTAGTTATTTTACTTAA+TGG - chr4_1:27102187-27102206 Msa0542330:intron 10.0%
!! TTTGAAAAAAAAAACTTAAT+AGG - chr4_1:27102452-27102471 Msa0542330:intron 10.0%
!!! TTATTGATCTTTTTTTTTTT+TGG + chr4_1:27102637-27102656 None:intergenic 10.0%
!!! ACATATATAATTTGATTTAA+TGG - chr4_1:27102663-27102682 Msa0542330:intron 10.0%
!! AAATTTGATAAAAAAATTAG+AGG + chr4_1:27102878-27102897 None:intergenic 10.0%
!!! ATTTTAAAATTCATCAATTT+TGG + chr4_1:27104006-27104025 None:intergenic 10.0%
!! TATAAAACTTGATTAATAAT+AGG + chr4_1:27104766-27104785 None:intergenic 10.0%
!! CAATATAAAATTAAAGAAAT+TGG - chr4_1:27106332-27106351 Msa0542330:five_prime_UTR 10.0%
!!! TATAAATTTTTGGATTAATG+TGG + chr4_1:27099697-27099716 None:intergenic 15.0%
!! AATAATTTCACTACAATATA+GGG + chr4_1:27099923-27099942 None:intergenic 15.0%
!!! GATTAGTTTTTAAGTTATTT+TGG + chr4_1:27100526-27100545 None:intergenic 15.0%
!!! AACTTTATGATTTGTTAAAA+AGG + chr4_1:27100650-27100669 None:intergenic 15.0%
!! AAATTTAAATAAGACTAAGT+AGG + chr4_1:27101254-27101273 None:intergenic 15.0%
!! GCAAAATTGAATTATAAAAT+TGG - chr4_1:27101702-27101721 Msa0542330:intron 15.0%
!! AAAGAAAGAAGAAAAAAATA+GGG + chr4_1:27102312-27102331 None:intergenic 15.0%
!! AAAAGAAAGAAGAAAAAAAT+AGG + chr4_1:27102313-27102332 None:intergenic 15.0%
!! TATAAGTGATTATTTGAAAA+AGG - chr4_1:27102416-27102435 Msa0542330:intron 15.0%
!!! GATTTAATATTTTCCAAAAT+AGG - chr4_1:27103167-27103186 Msa0542330:intron 15.0%
!! TTGATATTAGTTATATACTA+TGG - chr4_1:27103247-27103266 Msa0542330:intron 15.0%
!!! TATACTATGGTATAATTTTA+TGG - chr4_1:27103260-27103279 Msa0542330:intron 15.0%
!! AAGTATTATATACAATAATC+TGG + chr4_1:27103325-27103344 None:intergenic 15.0%
!!! CATATGATTTTTTTTTTTTG+AGG + chr4_1:27103503-27103522 None:intergenic 15.0%
!! TAATTTAGATAATGTCATAT+GGG + chr4_1:27103604-27103623 None:intergenic 15.0%
!! ATAATTTAGATAATGTCATA+TGG + chr4_1:27103605-27103624 None:intergenic 15.0%
!!! TCATATTCTTATTAGATTTT+AGG - chr4_1:27103624-27103643 Msa0542330:intron 15.0%
!!! TCTTTAGTTTATAAATAAGT+GGG + chr4_1:27103732-27103751 None:intergenic 15.0%
!!! TTCTTTAGTTTATAAATAAG+TGG + chr4_1:27103733-27103752 None:intergenic 15.0%
!! CTTATTTATAAACTAAAGAA+AGG - chr4_1:27103733-27103752 Msa0542330:intron 15.0%
!! CATGTAAATAATTTATCAAT+TGG - chr4_1:27103894-27103913 Msa0542330:intron 15.0%
!! AAAAGAAACCTTATAAAAAA+TGG - chr4_1:27104130-27104149 Msa0542330:intron 15.0%
!!! ATATTTCACCATTTTTTATA+AGG + chr4_1:27104141-27104160 None:intergenic 15.0%
!!! TATTTTTATGTAATTGAGAT+AGG + chr4_1:27104477-27104496 None:intergenic 15.0%
!!! TAAACATTGATAATATCTTT+AGG - chr4_1:27104635-27104654 Msa0542330:intron 15.0%
!! ATTAGTGAAATTATAAAAGA+AGG - chr4_1:27105178-27105197 Msa0542330:five_prime_UTR 15.0%
!! ACACATGAATTTAATTATAA+TGG - chr4_1:27105616-27105635 Msa0542330:five_prime_UTR 15.0%
!! TATATAGTTAAAGTGTGTTT+GGG + chr4_1:27099631-27099650 None:intergenic 20.0%
!! ATATATAGTTAAAGTGTGTT+TGG + chr4_1:27099632-27099651 None:intergenic 20.0%
!! ATAATTATTTAATCACCTAC+TGG + chr4_1:27099725-27099744 None:intergenic 20.0%
!! CAATAATTTCACTACAATAT+AGG + chr4_1:27099924-27099943 None:intergenic 20.0%
!! CTATATTGTAGTGAAATTAT+TGG - chr4_1:27099922-27099941 Msa0542330:CDS 20.0%
!!! ATATAACTTCTTTAAGTTTG+AGG - chr4_1:27100345-27100364 Msa0542330:CDS 20.0%
!!! ATTAGTCTTTTAAGTTATGT+TGG + chr4_1:27100585-27100604 None:intergenic 20.0%
!! CAAAAAAATGTTAAACATTG+TGG + chr4_1:27102123-27102142 None:intergenic 20.0%
!! ATCTTAATTAAAGATAGTGT+TGG + chr4_1:27102281-27102300 None:intergenic 20.0%
!!! TTTTTAACCTCAGTAAAAAA+GGG + chr4_1:27102506-27102525 None:intergenic 20.0%
!!! ATTTTTAACCTCAGTAAAAA+AGG + chr4_1:27102507-27102526 None:intergenic 20.0%
!!! AGACTTTTACTTTTCTAATT+TGG + chr4_1:27103056-27103075 None:intergenic 20.0%
!! GTCATCATTATTTAAAAATC+AGG + chr4_1:27103086-27103105 None:intergenic 20.0%
!! AAGAAAAAGAAGATTATAAC+CGG + chr4_1:27103371-27103390 None:intergenic 20.0%
!! GTAAATAATTTATCAATTGG+AGG - chr4_1:27103897-27103916 Msa0542330:intron 20.0%
!! GGTCTATAATGATAAAATAT+AGG + chr4_1:27104083-27104102 None:intergenic 20.0%
!!! TTTTTTTTTTTAAGAGAGTG+TGG + chr4_1:27104186-27104205 None:intergenic 20.0%
!! TGAGCAATAATAACTATTAA+AGG + chr4_1:27104557-27104576 None:intergenic 20.0%
!! AAACTTGATTAATAATAGGA+TGG + chr4_1:27104762-27104781 None:intergenic 20.0%
!! TTTCAAATTTATTGTGCATT+TGG - chr4_1:27105588-27105607 Msa0542330:five_prime_UTR 20.0%
!!! TTTAAAATTGACCTTATCTT+TGG - chr4_1:27105660-27105679 Msa0542330:five_prime_UTR 20.0%
!! TTAAAATTGACCTTATCTTT+GGG - chr4_1:27105661-27105680 Msa0542330:five_prime_UTR 20.0%
!! TTCAAATTATGATACACAAA+AGG + chr4_1:27106105-27106124 None:intergenic 20.0%
!!! AGTTAAATGAATTTTAGAAG+AGG + chr4_1:27106300-27106319 None:intergenic 20.0%
!!! ACTGGAAGAGTATAAATTTT+TGG + chr4_1:27099707-27099726 None:intergenic 25.0%
! AAAATTTATACTCTTCCAGT+AGG - chr4_1:27099707-27099726 Msa0542330:three_prime_UTR 25.0%
! TATTGTAGTGAAATTATTGG+AGG - chr4_1:27099925-27099944 Msa0542330:CDS 25.0%
! CTAACGTGTCAATATTTAAA+CGG - chr4_1:27099975-27099994 Msa0542330:CDS 25.0%
!! TGATCTTGTTTATTTAGCAA+AGG - chr4_1:27100261-27100280 Msa0542330:intron 25.0%
!! GAAAGCTTTTACAAACTTAA+AGG + chr4_1:27100416-27100435 None:intergenic 25.0%
!! ATTTGAGGTAAATCTAAAGT+TGG + chr4_1:27100680-27100699 None:intergenic 25.0%
! TATTACTTCAATAATGCACA+TGG - chr4_1:27100856-27100875 Msa0542330:CDS 25.0%
! AATGGTTAATAAAGACGATA+AGG + chr4_1:27100952-27100971 None:intergenic 25.0%
!!! CATTCTTTTTTACACAAACA+TGG - chr4_1:27101060-27101079 Msa0542330:intron 25.0%
! AACTGAACATTATACAAACT+GGG + chr4_1:27101423-27101442 None:intergenic 25.0%
! AGTTTGTATAATGTTCAGTT+CGG - chr4_1:27101423-27101442 Msa0542330:intron 25.0%
! AGATACCAATCAAGATTTAT+TGG + chr4_1:27101673-27101692 None:intergenic 25.0%
! GAATTATAAAATTGGACAAC+AGG - chr4_1:27101710-27101729 Msa0542330:intron 25.0%
! AAAAAATTAGAGGATCTTGT+AGG + chr4_1:27102868-27102887 None:intergenic 25.0%
!! GTTTTGTCTCAAAAATTTGA+GGG + chr4_1:27102961-27102980 None:intergenic 25.0%
!! ATAATTTTGTCTACCACAAT+GGG - chr4_1:27103223-27103242 Msa0542330:intron 25.0%
!! CTTTTTCTTTTACAAAATCG+TGG - chr4_1:27103382-27103401 Msa0542330:intron 25.0%
!!! GTATTTTATTTATCTAGCTG+AGG - chr4_1:27103522-27103541 Msa0542330:intron 25.0%
! TAGTTTATAAATAAGTGGGA+GGG + chr4_1:27103728-27103747 None:intergenic 25.0%
! TTAGTTTATAAATAAGTGGG+AGG + chr4_1:27103729-27103748 None:intergenic 25.0%
! TATTGATCATTCCATTTCAT+CGG + chr4_1:27103794-27103813 None:intergenic 25.0%
! CATCAATAAAATAGTAAGTG+TGG + chr4_1:27104215-27104234 None:intergenic 25.0%
! TCTTTCTAACACATTATTGT+GGG + chr4_1:27104364-27104383 None:intergenic 25.0%
! ATCTTTCTAACACATTATTG+TGG + chr4_1:27104365-27104384 None:intergenic 25.0%
! TTATCGTTTACATTTCACTT+TGG - chr4_1:27104401-27104420 Msa0542330:intron 25.0%
!!! AATCAAGTTTTATATTGACC+AGG - chr4_1:27104772-27104791 Msa0542330:five_prime_UTR 25.0%
!!! ATCAAGTTTTATATTGACCA+GGG - chr4_1:27104773-27104792 Msa0542330:five_prime_UTR 25.0%
! TTTCACTAATAAAGTTAGCA+GGG + chr4_1:27105168-27105187 None:intergenic 25.0%
! ATTTCACTAATAAAGTTAGC+AGG + chr4_1:27105169-27105188 None:intergenic 25.0%
!! ATAAAAGAAGGCACAAAAAA+TGG - chr4_1:27105190-27105209 Msa0542330:five_prime_UTR 25.0%
!! TCATGAACAATTTGAAATGA+CGG - chr4_1:27105237-27105256 Msa0542330:five_prime_UTR 25.0%
! GTTTAACCAAATTAAGTCTT+TGG - chr4_1:27105354-27105373 Msa0542330:five_prime_UTR 25.0%
! TCTTCAATATCTTTATGCAA+TGG + chr4_1:27105723-27105742 None:intergenic 25.0%
! GATATTGAAGAATTGTAGAA+AGG - chr4_1:27105732-27105751 Msa0542330:five_prime_UTR 25.0%
!!! GAATTTTAGAAGAGGAAAAA+GGG + chr4_1:27106292-27106311 None:intergenic 25.0%
!!! TGAATTTTAGAAGAGGAAAA+AGG + chr4_1:27106293-27106312 None:intergenic 25.0%
! AAATTAAAGAAATTGGGTCA+TGG - chr4_1:27106339-27106358 Msa0542330:five_prime_UTR 25.0%
! AATTAAAGAAATTGGGTCAT+GGG - chr4_1:27106340-27106359 Msa0542330:five_prime_UTR 25.0%
ATGTTATCATGTGAGTAAAG+GGG + chr4_1:27099503-27099522 None:intergenic 30.0%
CATGTTATCATGTGAGTAAA+GGG + chr4_1:27099504-27099523 None:intergenic 30.0%
ACATGTTATCATGTGAGTAA+AGG + chr4_1:27099505-27099524 None:intergenic 30.0%
!!! TAGATTTGTTTTGGTTCTCA+GGG + chr4_1:27099569-27099588 None:intergenic 30.0%
!! GCAACTATGTAGATTTGTTT+TGG + chr4_1:27099578-27099597 None:intergenic 30.0%
!! TTATCATGCACAATGGATTA+AGG + chr4_1:27099799-27099818 None:intergenic 30.0%
GTAAGATTTATCATGCACAA+TGG + chr4_1:27099806-27099825 None:intergenic 30.0%
TTTCACTACAATATAGGGAT+TGG + chr4_1:27099918-27099937 None:intergenic 30.0%
ATAAGTTATGACAAACCTTG+TGG + chr4_1:27100022-27100041 None:intergenic 30.0%
TTAGCATAGTGCATAACTAT+AGG + chr4_1:27100241-27100260 None:intergenic 30.0%
!!! TCAGAGATCTTTTAAGTTTG+AGG - chr4_1:27100294-27100313 Msa0542330:CDS 30.0%
! GTTTGAGGTTTGTAATAGAT+TGG - chr4_1:27100309-27100328 Msa0542330:CDS 30.0%
! TGTTAACCAAAATGATGATG+TGG - chr4_1:27100449-27100468 Msa0542330:CDS 30.0%
GTTACAAACCTCAAACTTAA+AGG - chr4_1:27100547-27100566 Msa0542330:intron 30.0%
! ACATAAGTCCTTTAAGTTTG+AGG + chr4_1:27100558-27100577 None:intergenic 30.0%
AAAAGGTTAAGTTACACCAT+GGG + chr4_1:27100633-27100652 None:intergenic 30.0%
AAAAAGGTTAAGTTACACCA+TGG + chr4_1:27100634-27100653 None:intergenic 30.0%
! GCAATTAGAGAGTTAATTTG+AGG + chr4_1:27100695-27100714 None:intergenic 30.0%
TTTCCTTTACCACTACAATT+TGG + chr4_1:27100782-27100801 None:intergenic 30.0%
ATTGCTAAAGTTCAAAAACG+TGG + chr4_1:27100909-27100928 None:intergenic 30.0%
ATAAGGTGTGATGAAATATG+TGG + chr4_1:27100935-27100954 None:intergenic 30.0%
TTTGCAAGTTGCAAATTCAA+TGG + chr4_1:27100970-27100989 None:intergenic 30.0%
! AATGAGATGATTTCAAGTGA+GGG + chr4_1:27101044-27101063 None:intergenic 30.0%
AAAAACGTTGCATATTGTCA+TGG + chr4_1:27101284-27101303 None:intergenic 30.0%
TTATTTAAGTGATGTTCCAG+TGG - chr4_1:27101361-27101380 Msa0542330:intron 30.0%
GAACTGAACATTATACAAAC+TGG + chr4_1:27101424-27101443 None:intergenic 30.0%
TGCAAAATTTCTTTCATGCA+AGG - chr4_1:27101554-27101573 Msa0542330:intron 30.0%
GCAAAATTTCTTTCATGCAA+GGG - chr4_1:27101555-27101574 Msa0542330:intron 30.0%
! AATTAGTGTTGAGATTGAGA+AGG - chr4_1:27101584-27101603 Msa0542330:intron 30.0%
ATGTAAACTACATATGTGCA+AGG - chr4_1:27101643-27101662 Msa0542330:intron 30.0%
GTCTACCAATAAATCTTGAT+TGG - chr4_1:27101665-27101684 Msa0542330:intron 30.0%
TCAAAAATGTGAGACATGTT+TGG + chr4_1:27101807-27101826 None:intergenic 30.0%
! CGTTAAAAAGGCAATTTTCA+TGG + chr4_1:27101888-27101907 None:intergenic 30.0%
!!! GCAAGTTTTAGACGTTAAAA+AGG + chr4_1:27101900-27101919 None:intergenic 30.0%
!!! GTTTTCTAGTTATAAGTCAG+CGG + chr4_1:27101970-27101989 None:intergenic 30.0%
CTGACTTATAACTAGAAAAC+TGG - chr4_1:27101970-27101989 Msa0542330:intron 30.0%
ACTTATAACTAGAAAACTGG+CGG - chr4_1:27101973-27101992 Msa0542330:intron 30.0%
!! TAGTCTTTTTCATGTGTTCT+AGG - chr4_1:27102019-27102038 Msa0542330:intron 30.0%
! TTTTCATCAGTTAGACATAG+TGG + chr4_1:27102154-27102173 None:intergenic 30.0%
!! CTTTTTACCCTTTTTTACTG+AGG - chr4_1:27102496-27102515 Msa0542330:intron 30.0%
! CGTTTTGTCTCAAAAATTTG+AGG + chr4_1:27102962-27102981 None:intergenic 30.0%
AAATTGACACTAATTCTCTC+TGG - chr4_1:27103115-27103134 Msa0542330:intron 30.0%
! GAGAAAAAACGAACCTATTT+TGG + chr4_1:27103183-27103202 None:intergenic 30.0%
! CATAATTTTGTCTACCACAA+TGG - chr4_1:27103222-27103241 Msa0542330:intron 30.0%
AACTAATATCAAACCCATTG+TGG + chr4_1:27103239-27103258 None:intergenic 30.0%
AGATAATGTCATATGGGTTT+GGG + chr4_1:27103598-27103617 None:intergenic 30.0%
TAGATAATGTCATATGGGTT+TGG + chr4_1:27103599-27103618 None:intergenic 30.0%
!!! ATCTTATTTTCAACCACTCA+TGG - chr4_1:27103665-27103684 Msa0542330:intron 30.0%
! AACGGGTGGATTTAAAAATA+GGG + chr4_1:27103700-27103719 None:intergenic 30.0%
! AAACGGGTGGATTTAAAAAT+AGG + chr4_1:27103701-27103720 None:intergenic 30.0%
! ATTTTTAAATCCACCCGTTT+TGG - chr4_1:27103701-27103720 Msa0542330:intron 30.0%
ATTGATCATTCCATTTCATC+GGG + chr4_1:27103793-27103812 None:intergenic 30.0%
! TTGCTCAATTTTGCAAACAA+AGG - chr4_1:27104570-27104589 Msa0542330:intron 30.0%
! TGCTCAATTTTGCAAACAAA+GGG - chr4_1:27104571-27104590 Msa0542330:intron 30.0%
ATAATAGGAATCTTTGACCT+AGG + chr4_1:27104667-27104686 None:intergenic 30.0%
GTCAAAGATTCCTATTATGT+TGG - chr4_1:27104669-27104688 Msa0542330:intron 30.0%
ATTTGCGAATCCAACATAAT+AGG + chr4_1:27104682-27104701 None:intergenic 30.0%
TGCTTGGACAAATTGAAATA+TGG - chr4_1:27104822-27104841 Msa0542330:five_prime_UTR 30.0%
! ACAATTTGAGTTAAGGATAG+TGG + chr4_1:27104935-27104954 None:intergenic 30.0%
! ATTCTGCACAATTTGAGTTA+AGG + chr4_1:27104942-27104961 None:intergenic 30.0%
TTAAAAGTAGAGTGGAATCA+GGG + chr4_1:27104982-27105001 None:intergenic 30.0%
CATTACTCTTAAAAGTAGAG+TGG + chr4_1:27104990-27105009 None:intergenic 30.0%
TTTAAGAGTAATGAGAGTCA+TGG - chr4_1:27104997-27105016 Msa0542330:five_prime_UTR 30.0%
!!! ATGTCATTTTTGTGTCTTGT+AGG + chr4_1:27105102-27105121 None:intergenic 30.0%
ACAAGACACAAAAATGACAT+TGG - chr4_1:27105102-27105121 Msa0542330:five_prime_UTR 30.0%
TTTCAAATTGTTCATGACCA+TGG + chr4_1:27105234-27105253 None:intergenic 30.0%
! CATGAACAATTTGAAATGAC+GGG - chr4_1:27105238-27105257 Msa0542330:five_prime_UTR 30.0%
! ATGAACAATTTGAAATGACG+GGG - chr4_1:27105239-27105258 Msa0542330:five_prime_UTR 30.0%
TTATTGCTGGATACAAAGAT+GGG - chr4_1:27105332-27105351 Msa0542330:five_prime_UTR 30.0%
CATCAACCAAAGACTTAATT+TGG + chr4_1:27105363-27105382 None:intergenic 30.0%
! ATTAAGTCTTTGGTTGATGT+TGG - chr4_1:27105364-27105383 Msa0542330:five_prime_UTR 30.0%
AAGTTAATAGCTTGAATGTG+AGG + chr4_1:27105433-27105452 None:intergenic 30.0%
TAAATGGTTCATTTCCTTCT+GGG + chr4_1:27105807-27105826 None:intergenic 30.0%
AAATACTTATTCAACGAGAC+AGG - chr4_1:27105904-27105923 Msa0542330:five_prime_UTR 30.0%
!!! TTTTGATGATGTTGTAACGA+GGG + chr4_1:27105933-27105952 None:intergenic 30.0%
!!! ATTTTGATGATGTTGTAACG+AGG + chr4_1:27105934-27105953 None:intergenic 30.0%
ATCTTCCATGAATTTAGACT+GGG + chr4_1:27105987-27106006 None:intergenic 30.0%
!!! ACTTGGAGTTTTGTTATCTA+AGG - chr4_1:27106071-27106090 Msa0542330:five_prime_UTR 30.0%
!!! GTAGATTTGTTTTGGTTCTC+AGG + chr4_1:27099570-27099589 None:intergenic 35.0%
! ACCTTACATGCATGAGTTTT+TGG - chr4_1:27099600-27099619 Msa0542330:three_prime_UTR 35.0%
ACCAAAAACTCATGCATGTA+AGG + chr4_1:27099604-27099623 None:intergenic 35.0%
!! TTACATGCATGAGTTTTTGG+TGG - chr4_1:27099603-27099622 Msa0542330:three_prime_UTR 35.0%
! CAATATAGGGATTGGTATGT+CGG + chr4_1:27099910-27099929 None:intergenic 35.0%
AAATTGAAGATGTGACCACA+AGG - chr4_1:27100004-27100023 Msa0542330:CDS 35.0%
AAGGCTAACTTATGTCCTAT+AGG - chr4_1:27100065-27100084 Msa0542330:CDS 35.0%
AGGCTAACTTATGTCCTATA+GGG - chr4_1:27100066-27100085 Msa0542330:CDS 35.0%
ATAGTGCATAACTATAGGAC+GGG + chr4_1:27100236-27100255 None:intergenic 35.0%
CATAGTGCATAACTATAGGA+CGG + chr4_1:27100237-27100256 None:intergenic 35.0%
GAACCAAATTGTAGTGGTAA+AGG - chr4_1:27100776-27100795 Msa0542330:CDS 35.0%
TAATGTGATTGATGAGTGTG+TGG + chr4_1:27100833-27100852 None:intergenic 35.0%
!!! CTTTGTTTTGGTTCCAATTC+AGG + chr4_1:27101006-27101025 None:intergenic 35.0%
CTGAATTGGAACCAAAACAA+AGG - chr4_1:27101004-27101023 Msa0542330:CDS 35.0%
! ATGAGATGATTTCAAGTGAG+GGG + chr4_1:27101043-27101062 None:intergenic 35.0%
! GAATGAGATGATTTCAAGTG+AGG + chr4_1:27101045-27101064 None:intergenic 35.0%
GAACATTATACAAACTGGGA+AGG + chr4_1:27101419-27101438 None:intergenic 35.0%
GTATAATGTTCAGTTCGGAT+TGG - chr4_1:27101428-27101447 Msa0542330:intron 35.0%
!!! GGAATCTTTTTTTCCAACTG+TGG - chr4_1:27101482-27101501 Msa0542330:intron 35.0%
GAATTAATTACAGCCACAGT+TGG + chr4_1:27101498-27101517 None:intergenic 35.0%
GGTACACTACTCATCATAAA+TGG - chr4_1:27101731-27101750 Msa0542330:intron 35.0%
CGGTATTTAACTACAGTTGA+GGG + chr4_1:27101950-27101969 None:intergenic 35.0%
! TTTTTCATATCACGTGTGGA+TGG + chr4_1:27102079-27102098 None:intergenic 35.0%
TCCACACGTGATATGAAAAA+TGG - chr4_1:27102079-27102098 Msa0542330:intron 35.0%
!! TCCATTTTTCATATCACGTG+TGG + chr4_1:27102083-27102102 None:intergenic 35.0%
TTGTGCACATTAGACAATTG+TGG + chr4_1:27102548-27102567 None:intergenic 35.0%
CATTAGCATGTTTGATTAGC+CGG - chr4_1:27103349-27103368 Msa0542330:intron 35.0%
CACATTATTGTGGGTCATTT+CGG + chr4_1:27104355-27104374 None:intergenic 35.0%
! ACTTTGGAGACATCAAGAAA+AGG - chr4_1:27104417-27104436 Msa0542330:intron 35.0%
! GCTCAATTTTGCAAACAAAG+GGG - chr4_1:27104572-27104591 Msa0542330:intron 35.0%
ATATCTTTAGGTGTTTGCCT+AGG - chr4_1:27104647-27104666 Msa0542330:intron 35.0%
GAAGAAGAAGAATCATTGCT+TGG - chr4_1:27104806-27104825 Msa0542330:five_prime_UTR 35.0%
GCCATAACGGTCTATAATAT+CGG + chr4_1:27104909-27104928 None:intergenic 35.0%
TAAAAGTAGAGTGGAATCAG+GGG + chr4_1:27104981-27105000 None:intergenic 35.0%
CTTAAAAGTAGAGTGGAATC+AGG + chr4_1:27104983-27105002 None:intergenic 35.0%
AGTGCAGAAAAATCAGAAAC+CGG - chr4_1:27105037-27105056 Msa0542330:five_prime_UTR 35.0%
TGATTCTCTAGCAACAACAT+TGG + chr4_1:27105130-27105149 None:intergenic 35.0%
TAGCAGGGTTCAAATGAAAA+GGG + chr4_1:27105153-27105172 None:intergenic 35.0%
TTAGCAGGGTTCAAATGAAA+AGG + chr4_1:27105154-27105173 None:intergenic 35.0%
AAAATGGCACTGCTTTCTTT+AGG - chr4_1:27105206-27105225 Msa0542330:five_prime_UTR 35.0%
!! TACAATGACTTGTTCAACCA+AGG - chr4_1:27105274-27105293 Msa0542330:five_prime_UTR 35.0%
GTTATTGCTGGATACAAAGA+TGG - chr4_1:27105331-27105350 Msa0542330:five_prime_UTR 35.0%
! AGGATAAGCTCTAACAATCT+CGG + chr4_1:27105413-27105432 None:intergenic 35.0%
!! TAACTTTGATTTGCCTCATG+TGG - chr4_1:27105447-27105466 Msa0542330:five_prime_UTR 35.0%
GGTGATACCATCAAAATTAG+GGG + chr4_1:27105482-27105501 None:intergenic 35.0%
GGGTGATACCATCAAAATTA+GGG + chr4_1:27105483-27105502 None:intergenic 35.0%
TGGGTGATACCATCAAAATT+AGG + chr4_1:27105484-27105503 None:intergenic 35.0%
ATGTAAATAGCATCAGCACT+AGG + chr4_1:27105535-27105554 None:intergenic 35.0%
! TGCTGATGCTATTTACATGA+AGG - chr4_1:27105537-27105556 Msa0542330:five_prime_UTR 35.0%
AATACCAGAGAAAACAGGAA+AGG - chr4_1:27105756-27105775 Msa0542330:five_prime_UTR 35.0%
GATCATTGTGGATCATGTAT+TGG - chr4_1:27105780-27105799 Msa0542330:five_prime_UTR 35.0%
GTAAATGGTTCATTTCCTTC+TGG + chr4_1:27105808-27105827 None:intergenic 35.0%
AAGAAAGAACTGAAGAGAAC+TGG - chr4_1:27105881-27105900 Msa0542330:five_prime_UTR 35.0%
CATCTTCCATGAATTTAGAC+TGG + chr4_1:27105988-27106007 None:intergenic 35.0%
AGGAAAAAGGGAAGAAAATG+TGG + chr4_1:27106280-27106299 None:intergenic 35.0%
AGTAAAGGGGATTGCTCTTT+AGG + chr4_1:27099490-27099509 None:intergenic 40.0%
TGGAGGTCTATGTCCATATA+TGG - chr4_1:27099942-27099961 Msa0542330:CDS 40.0%
TAGCACATGTGTGCCATATA+TGG + chr4_1:27099958-27099977 None:intergenic 40.0%
TGTCCTATAGGGACAATACT+TGG - chr4_1:27100077-27100096 Msa0542330:CDS 40.0%
GTCCTATAGGGACAATACTT+GGG - chr4_1:27100078-27100097 Msa0542330:CDS 40.0%
!! CAATACTTGGGTGCCATTAA+TGG - chr4_1:27100090-27100109 Msa0542330:CDS 40.0%
AATGTGTAGCCCTGATCTAA+TGG - chr4_1:27100180-27100199 Msa0542330:intron 40.0%
!! TAATGGCATGGTGCCATTAA+TGG - chr4_1:27100197-27100216 Msa0542330:intron 40.0%
! CTTCTGCCACATCATCATTT+TGG + chr4_1:27100458-27100477 None:intergenic 40.0%
! CAAAATGATGATGTGGCAGA+AGG - chr4_1:27100456-27100475 Msa0542330:CDS 40.0%
ACCACAAACTTAAAGACCCA+TGG - chr4_1:27100614-27100633 Msa0542330:CDS 40.0%
! ACCATGGGTCTTTAAGTTTG+TGG + chr4_1:27100618-27100637 None:intergenic 40.0%
TTCTGCACTACAATGTAGTG+TGG + chr4_1:27100759-27100778 None:intergenic 40.0%
AGTGCAGAACCAAATTGTAG+TGG - chr4_1:27100770-27100789 Msa0542330:CDS 40.0%
AAGTTCAAAAACGTGGCAGA+TGG + chr4_1:27100902-27100921 None:intergenic 40.0%
!! AGGGAAGAAAGCCTTTGTTT+TGG + chr4_1:27101018-27101037 None:intergenic 40.0%
TCTATATCTACGCACCTTGA+AGG + chr4_1:27101119-27101138 None:intergenic 40.0%
! TGATGTTCCAGTGGCTTTTA+TGG - chr4_1:27101370-27101389 Msa0542330:intron 40.0%
TTATACAAACTGGGAAGGCA+GGG + chr4_1:27101414-27101433 None:intergenic 40.0%
ATTATACAAACTGGGAAGGC+AGG + chr4_1:27101415-27101434 None:intergenic 40.0%
TTGGGAAACTCATCAGGAAA+TGG - chr4_1:27101461-27101480 Msa0542330:intron 40.0%
CATAAATGGCTCCACTTATG+TGG - chr4_1:27101745-27101764 Msa0542330:intron 40.0%
! AGACACACTAACGGATCATA+TGG - chr4_1:27101773-27101792 Msa0542330:intron 40.0%
GCGGTATTTAACTACAGTTG+AGG + chr4_1:27101951-27101970 None:intergenic 40.0%
! CAATTGTGGTGCTAACTCAA+TGG + chr4_1:27102534-27102553 None:intergenic 40.0%
AGGGAGATAAAATCCATGAG+TGG + chr4_1:27103681-27103700 None:intergenic 40.0%
TGACATACAACCCGATGAAA+TGG - chr4_1:27103780-27103799 Msa0542330:intron 40.0%
TTCCACGACGAGGTAAAAAT+AGG - chr4_1:27104037-27104056 Msa0542330:intron 40.0%
TCCACGACGAGGTAAAAATA+GGG - chr4_1:27104038-27104057 Msa0542330:intron 40.0%
TATGAGTCCACCACTATATG+TGG - chr4_1:27104314-27104333 Msa0542330:intron 40.0%
ATGAGTCCACCACTATATGT+GGG - chr4_1:27104315-27104334 Msa0542330:intron 40.0%
ACTATGAGTCCCACATATAG+TGG + chr4_1:27104327-27104346 None:intergenic 40.0%
AAAGGGGAATAAACAGTGTC+TGG - chr4_1:27104588-27104607 Msa0542330:intron 40.0%
!!! TTTTGCTCTAAAAGCTGTCG+TGG - chr4_1:27104871-27104890 Msa0542330:five_prime_UTR 40.0%
GCCGATATTATAGACCGTTA+TGG - chr4_1:27104905-27104924 Msa0542330:five_prime_UTR 40.0%
! AGGATAGTGGTTTGCCATAA+CGG + chr4_1:27104922-27104941 None:intergenic 40.0%
GTGCAGAAAAATCAGAAACC+GGG - chr4_1:27105038-27105057 Msa0542330:five_prime_UTR 40.0%
TGCAGAAAAATCAGAAACCG+GGG - chr4_1:27105039-27105058 Msa0542330:five_prime_UTR 40.0%
! ACAATTTGAAATGACGGGGT+TGG - chr4_1:27105243-27105262 Msa0542330:five_prime_UTR 40.0%
!! TGACTTGTTCAACCAAGGTA+TGG - chr4_1:27105279-27105298 Msa0542330:five_prime_UTR 40.0%
! AAGTCTTTGGTTGATGTTGG+CGG - chr4_1:27105367-27105386 Msa0542330:five_prime_UTR 40.0%
TTTGCCTCATGTGGTTTCAA+CGG - chr4_1:27105456-27105475 Msa0542330:five_prime_UTR 40.0%
! TTTGATGGTATCACCCATGT+TGG - chr4_1:27105487-27105506 Msa0542330:five_prime_UTR 40.0%
AAACATGTCTCCTCCAACAT+GGG + chr4_1:27105503-27105522 None:intergenic 40.0%
TGACCTTATCTTTGGGTGAA+TGG - chr4_1:27105668-27105687 Msa0542330:five_prime_UTR 40.0%
AAGGCAATACCAGAGAAAAC+AGG - chr4_1:27105751-27105770 Msa0542330:five_prime_UTR 40.0%
! ATCACCTTTCCTGTTTTCTC+TGG + chr4_1:27105763-27105782 None:intergenic 40.0%
AACAGGAAAGGTGATCATTG+TGG - chr4_1:27105768-27105787 Msa0542330:five_prime_UTR 40.0%
AATGAACCATTTACCGACAC+TGG - chr4_1:27105814-27105833 Msa0542330:five_prime_UTR 40.0%
ATGAACCATTTACCGACACT+GGG - chr4_1:27105815-27105834 Msa0542330:five_prime_UTR 40.0%
GCATTCCCAGTCTAAATTCA+TGG - chr4_1:27105979-27105998 Msa0542330:five_prime_UTR 40.0%
ATGGAAGATGACGAGTTTGT+TGG - chr4_1:27105998-27106017 Msa0542330:five_prime_UTR 40.0%
TTCGTATGTGTTGTGTTGTG+TGG - chr4_1:27106044-27106063 Msa0542330:five_prime_UTR 40.0%
! TTGTGTTGTGTGGCTTTACT+TGG - chr4_1:27106054-27106073 Msa0542330:five_prime_UTR 40.0%
! CATGAATCATAGCTAGCTCT+AGG + chr4_1:27106146-27106165 None:intergenic 40.0%
AGCTAGCTATGATTCATGCA+TGG - chr4_1:27106148-27106167 Msa0542330:five_prime_UTR 40.0%
GCTAGCTATGATTCATGCAT+GGG - chr4_1:27106149-27106168 Msa0542330:five_prime_UTR 40.0%
CTAGCTATGATTCATGCATG+GGG - chr4_1:27106150-27106169 Msa0542330:five_prime_UTR 40.0%
TAGCTATGATTCATGCATGG+GGG - chr4_1:27106151-27106170 Msa0542330:five_prime_UTR 40.0%
!!! GTTTTGGTTCTCAGGGAAGA+TGG + chr4_1:27099562-27099581 None:intergenic 45.0%
! CACCCAAGTATTGTCCCTAT+AGG + chr4_1:27100083-27100102 None:intergenic 45.0%
!! TAATGGCACGGTGCCATTAA+TGG + chr4_1:27100106-27100125 None:intergenic 45.0%
CATCAATGGCCAGGATGTAA+TGG + chr4_1:27100123-27100142 None:intergenic 45.0%
CATTACATCCTGGCCATTGA+TGG - chr4_1:27100121-27100140 Msa0542330:CDS 45.0%
GTGTGTGTGATGTGTGTGTT+GGG + chr4_1:27100149-27100168 None:intergenic 45.0%
TGTGTGTGTGATGTGTGTGT+TGG + chr4_1:27100150-27100169 None:intergenic 45.0%
ACACATCACACACACACACT+TGG - chr4_1:27100154-27100173 Msa0542330:intron 45.0%
CACATCACACACACACACTT+GGG - chr4_1:27100155-27100174 Msa0542330:intron 45.0%
ACATCACACACACACACTTG+GGG - chr4_1:27100156-27100175 Msa0542330:intron 45.0%
!! TGGCACTTTGGTGCCATTAA+TGG + chr4_1:27100213-27100232 None:intergenic 45.0%
TGTGATTGATGAGTGTGTGG+TGG + chr4_1:27100830-27100849 None:intergenic 45.0%
CCAATTCAGGTGTGTTGGAT+TGG + chr4_1:27100993-27101012 None:intergenic 45.0%
CCAATCCAACACACCTGAAT+TGG - chr4_1:27100990-27101009 Msa0542330:CDS 45.0%
TGGTTCCAATTCAGGTGTGT+TGG + chr4_1:27100998-27101017 None:intergenic 45.0%
! TGATTTCAAGTGAGGGGTGA+GGG + chr4_1:27101037-27101056 None:intergenic 45.0%
! ATGATTTCAAGTGAGGGGTG+AGG + chr4_1:27101038-27101057 None:intergenic 45.0%
! GTTCAGTTCGGATTGGACTA+TGG - chr4_1:27101435-27101454 Msa0542330:intron 45.0%
! TCGGATTGGACTATGGAGTT+TGG - chr4_1:27101442-27101461 Msa0542330:intron 45.0%
! CGGATTGGACTATGGAGTTT+GGG - chr4_1:27101443-27101462 Msa0542330:intron 45.0%
TGGAGTTTGGGAAACTCATC+AGG - chr4_1:27101455-27101474 Msa0542330:intron 45.0%
ATGGCTCCACTTATGTGGTT+TGG - chr4_1:27101750-27101769 Msa0542330:intron 45.0%
GTGTCTCCAAACCACATAAG+TGG + chr4_1:27101759-27101778 None:intergenic 45.0%
! GTGGTTTGGAGACACACTAA+CGG - chr4_1:27101764-27101783 Msa0542330:intron 45.0%
TTACTAATGTTGTGCGTCGC+AGG - chr4_1:27103559-27103578 Msa0542330:intron 45.0%
ATAAGTGGGAGGGACCAAAA+CGG + chr4_1:27103718-27103737 None:intergenic 45.0%
GAAAGATCAATTCCACGACG+AGG - chr4_1:27104027-27104046 Msa0542330:intron 45.0%
CCACGACGAGGTAAAAATAG+GGG - chr4_1:27104039-27104058 Msa0542330:intron 45.0%
CACGACGAGGTAAAAATAGG+GGG - chr4_1:27104040-27104059 Msa0542330:intron 45.0%
ATGAGTCCCACATATAGTGG+TGG + chr4_1:27104324-27104343 None:intergenic 45.0%
GAAACCGGGGAAATTCTCTA+CGG - chr4_1:27105052-27105071 Msa0542330:five_prime_UTR 45.0%
GCTTGACACGTGCATCAAAA+TGG - chr4_1:27105074-27105093 Msa0542330:five_prime_UTR 45.0%
ACTGCTTTCTTTAGGTGCCA+TGG - chr4_1:27105214-27105233 Msa0542330:five_prime_UTR 45.0%
! AGTCTTTGGTTGATGTTGGC+GGG - chr4_1:27105368-27105387 Msa0542330:five_prime_UTR 45.0%
! TCAACGGCCCCTAATTTTGA+TGG - chr4_1:27105472-27105491 Msa0542330:five_prime_UTR 45.0%
CAAACATGTCTCCTCCAACA+TGG + chr4_1:27105504-27105523 None:intergenic 45.0%
CTGCCATTCACCCAAAGATA+AGG + chr4_1:27105674-27105693 None:intergenic 45.0%
TATCTTTGGGTGAATGGCAG+TGG - chr4_1:27105674-27105693 Msa0542330:five_prime_UTR 45.0%
GATCATGTATTGGACCCAGA+AGG - chr4_1:27105790-27105809 Msa0542330:five_prime_UTR 45.0%
GTCAAATGCTATCCCAGTGT+CGG + chr4_1:27105830-27105849 None:intergenic 45.0%
!! GAATCATAGCTAGCTCTAGG+TGG + chr4_1:27106143-27106162 None:intergenic 45.0%
AGCTATGATTCATGCATGGG+GGG - chr4_1:27106152-27106171 Msa0542330:five_prime_UTR 45.0%
CTGCTATCTGATCTGCTGAT+GGG + chr4_1:27106189-27106208 None:intergenic 45.0%
TCTGCTATCTGATCTGCTGA+TGG + chr4_1:27106190-27106209 None:intergenic 45.0%
!!! TATTTTTTATTTTTTTTGAA+AGG - chr4_1:27099649-27099668 Msa0542330:three_prime_UTR 5.0%
!!! ATTTTTTATTTTTTTTGAAA+GGG - chr4_1:27099650-27099669 Msa0542330:three_prime_UTR 5.0%
!! TTTCAAAAAAAAAAAAAAAT+AGG + chr4_1:27100047-27100066 None:intergenic 5.0%
!!! TATTTTTTTTTTTTTTTGAA+AGG - chr4_1:27100046-27100065 Msa0542330:CDS 5.0%
!! ATTAATTTATGATAAAAAAA+CGG + chr4_1:27104104-27104123 None:intergenic 5.0%
!!! AATATAAGTAAATTTTAATA+TGG - chr4_1:27104719-27104738 Msa0542330:intron 5.0%
!! AATATAAAATTAAAGAAATT+GGG - chr4_1:27106333-27106352 Msa0542330:five_prime_UTR 5.0%
GGGAAGATGGACATGGACAA+TGG + chr4_1:27099549-27099568 None:intergenic 50.0%
GTTCTCAGGGAAGATGGACA+TGG + chr4_1:27099556-27099575 None:intergenic 50.0%
ATGGCCAGGATGTAATGGCA+CGG + chr4_1:27100118-27100137 None:intergenic 50.0%
! TGTGTGTTGGGTGCCATCAA+TGG + chr4_1:27100137-27100156 None:intergenic 50.0%
GTAGCCCTGATCTAATGGCA+TGG - chr4_1:27100185-27100204 Msa0542330:intron 50.0%
GGCACCATGCCATTAGATCA+GGG + chr4_1:27100192-27100211 None:intergenic 50.0%
TGGCACCATGCCATTAGATC+AGG + chr4_1:27100193-27100212 None:intergenic 50.0%
GTGCATAACTATAGGACGGG+TGG + chr4_1:27100233-27100252 None:intergenic 50.0%
AAAACGTGGCAGATGGAGTG+TGG + chr4_1:27100895-27100914 None:intergenic 50.0%
!! CAGGGTTAGTATTGGTCCAG+TGG + chr4_1:27101396-27101415 None:intergenic 50.0%
! TGGGAAGGCAGGGTTAGTAT+TGG + chr4_1:27101404-27101423 None:intergenic 50.0%
CTAGCTGAGGTTCGTGTTCA+TGG - chr4_1:27103535-27103554 Msa0542330:intron 50.0%
TAAGTGGGAGGGACCAAAAC+GGG + chr4_1:27103717-27103736 None:intergenic 50.0%
!!! CCCCTATTTTTACCTCGTCG+TGG + chr4_1:27104042-27104061 None:intergenic 50.0%
TATTGACCAGGGTGTGAGCA+AGG - chr4_1:27104784-27104803 Msa0542330:five_prime_UTR 50.0%
AGTAGAGTGGAATCAGGGGA+AGG + chr4_1:27104977-27104996 None:intergenic 50.0%
CAAGCCGTAGAGAATTTCCC+CGG + chr4_1:27105059-27105078 None:intergenic 50.0%
TAGCGGTGCAAACCATACCT+TGG + chr4_1:27105294-27105313 None:intergenic 50.0%
CACCGCTAGAATTGTGTCGA+GGG - chr4_1:27105306-27105325 Msa0542330:five_prime_UTR 50.0%
AGCCCTCGACACAATTCTAG+CGG + chr4_1:27105311-27105330 None:intergenic 50.0%
! GTCTTTGGTTGATGTTGGCG+GGG - chr4_1:27105369-27105388 Msa0542330:five_prime_UTR 50.0%
! TCTTTGGTTGATGTTGGCGG+GGG - chr4_1:27105370-27105389 Msa0542330:five_prime_UTR 50.0%
GATGGTATCACCCATGTTGG+AGG - chr4_1:27105490-27105509 Msa0542330:five_prime_UTR 50.0%
! GGCAGTGGATTCTTCATGAC+TGG - chr4_1:27105689-27105708 Msa0542330:five_prime_UTR 50.0%
!! GCTATCCCAGTGTCGGTAAA+TGG + chr4_1:27105823-27105842 None:intergenic 50.0%
! ATGTTGCTTGCTCACAACGC+TGG - chr4_1:27105853-27105872 Msa0542330:five_prime_UTR 50.0%
TGCTCTGCCATGCATCATTG+AGG - chr4_1:27105957-27105976 Msa0542330:five_prime_UTR 50.0%
GGGAATGCCTCAATGATGCA+TGG + chr4_1:27105967-27105986 None:intergenic 50.0%
TATGATTCATGCATGGGGGG+AGG - chr4_1:27106155-27106174 Msa0542330:five_prime_UTR 50.0%
CTATAGGACGGGTGGCACTT+TGG + chr4_1:27100225-27100244 None:intergenic 55.0%
GGCAGAAGGTGGTGAGTGTT+TGG + chr4_1:27101098-27101117 None:intergenic 55.0%
CTCACCACCTTCTGCCTTCA+AGG - chr4_1:27101102-27101121 Msa0542330:intron 55.0%
CTACGCACCTTGAAGGCAGA+AGG + chr4_1:27101112-27101131 None:intergenic 55.0%
CCAGTGGCCATAAAAGCCAC+TGG + chr4_1:27101380-27101399 None:intergenic 55.0%
! CCAGTGGCTTTTATGGCCAC+TGG - chr4_1:27101377-27101396 Msa0542330:intron 55.0%
CTTCTTCCTTGCTCACACCC+TGG + chr4_1:27104793-27104812 None:intergenic 55.0%
GCACCGCTAGAATTGTGTCG+AGG - chr4_1:27105305-27105324 Msa0542330:five_prime_UTR 55.0%
GTGTCGAGGGCTGTTATTGC+TGG - chr4_1:27105319-27105338 Msa0542330:five_prime_UTR 55.0%
! GTTGATGTTGGCGGGGGTAT+CGG - chr4_1:27105376-27105395 Msa0542330:five_prime_UTR 55.0%
TTGCTTGCTCACAACGCTGG+TGG - chr4_1:27105856-27105875 Msa0542330:five_prime_UTR 55.0%
! GGCACCGTGCCATTACATCC+TGG - chr4_1:27100111-27100130 Msa0542330:CDS 60.0%
! GTTGGGTGCCATCAATGGCC+AGG + chr4_1:27100132-27100151 None:intergenic 60.0%
CGCACCTTGAAGGCAGAAGG+TGG + chr4_1:27101109-27101128 None:intergenic 60.0%
GGGGCCGTTGAAACCACATG+AGG + chr4_1:27105463-27105482 None:intergenic 60.0%
! CATGCATGGGGGGAGGCTTT+TGG - chr4_1:27106162-27106181 Msa0542330:five_prime_UTR 60.0%
GTGGGAGGGACCAAAACGGG+TGG + chr4_1:27103714-27103733 None:intergenic 65.0%
!! GATGTTGGCGGGGGTATCGG+AGG - chr4_1:27105379-27105398 Msa0542330:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 27099486 27106363 27099486 ID=Msa0542330;Name=Msa0542330
chr4_1 mRNA 27099486 27106363 27099486 ID=Msa0542330-mRNA-1;Parent=Msa0542330;Name=Msa0542330-mRNA-1;_AED=0.06;_eAED=0.06;_QI=1593|0.5|0.4|1|0.25|0.2|5|370|347
chr4_1 exon 27099486 27100155 27099486 ID=Msa0542330-mRNA-1:exon:7313;Parent=Msa0542330-mRNA-1
chr4_1 exon 27100291 27100534 27100291 ID=Msa0542330-mRNA-1:exon:7312;Parent=Msa0542330-mRNA-1
chr4_1 exon 27100589 27100818 27100589 ID=Msa0542330-mRNA-1:exon:7311;Parent=Msa0542330-mRNA-1
chr4_1 exon 27100831 27101055 27100831 ID=Msa0542330-mRNA-1:exon:7310;Parent=Msa0542330-mRNA-1
chr4_1 exon 27104726 27106363 27104726 ID=Msa0542330-mRNA-1:exon:7309;Parent=Msa0542330-mRNA-1
chr4_1 five_prime_UTR 27104771 27106363 27104771 ID=Msa0542330-mRNA-1:five_prime_utr;Parent=Msa0542330-mRNA-1
chr4_1 CDS 27104726 27104770 27104726 ID=Msa0542330-mRNA-1:cds;Parent=Msa0542330-mRNA-1
chr4_1 CDS 27100831 27101055 27100831 ID=Msa0542330-mRNA-1:cds;Parent=Msa0542330-mRNA-1
chr4_1 CDS 27100589 27100818 27100589 ID=Msa0542330-mRNA-1:cds;Parent=Msa0542330-mRNA-1
chr4_1 CDS 27100291 27100534 27100291 ID=Msa0542330-mRNA-1:cds;Parent=Msa0542330-mRNA-1
chr4_1 CDS 27099856 27100155 27099856 ID=Msa0542330-mRNA-1:cds;Parent=Msa0542330-mRNA-1
chr4_1 three_prime_UTR 27099486 27099855 27099486 ID=Msa0542330-mRNA-1:three_prime_utr;Parent=Msa0542330-mRNA-1
Gene Sequence

>Msa0542330

ATGGAGACTGTTCTTTCCAAACACTCACCACCTTCTGCCTTCAAGGGTGTGAGCAAGGAAGAAGAAGAATCATTGCTTGGACAAATTGAAATATGGAAATACATGACACAATTCACAGACTCTTTTGCTCTAAAAGCTGTCGTGGAGCTACGCATAGCCGATATTATAGACCGTTATGGCAAACCACTATCCTTAACTCAAATTGTGCAGAATCTTGAAGATGCACCTTCCCCTGATTCCACTCTACTTTTAAGAGTAATGAGAGTCATGATTTTCAGTGCAGAAAAATCAGAAACCGGGGAAATTCTCTACGGCTTGACACGTGCATCAAAATGGATCCTACAAGACACAAAAATGACATTGGCACCAATGTTGTTGCTAGAGAATCACCCTTTTCATTTGAACCCTGCTAACTTTATTAGTGAAATTATAAAAGAAGGCACAAAAAATGGCACTGCTTTCTTTAGGTGCCATGGTCATGAACAATTTGAAATGACGGGAATTGTGTCGAGGGCTGTTATTGCTGGATACAAAGATGGGTTTAACCAAATTAAGTCTTTGGTTGATGTTGGCGGGGGTATCGGAGGATCTCTCTCCGAGATTGTTAGAGCTTATCCTCACATTCAAGCTATTAACTTTGATTTGCCTCATGTGGTTTCAACGGCCCCTAATTTTGATGGTATCACCCATGTTGGAGGAGACATGTTTGTGTCAGTTCCTAGTGCTGATGCTATTTACATGAAGTGGATTCTTCATGACTGGAGCGACGACCATTGCATAAAGATATTGAAGAATTGTAGAAAGGCAATACCAGAGAAAACAGGAAAGGTGATCATTGTGGATCATGTATTGGACCCAGAAGGAAATGAACCATTTACCGACACTGGGATAGCATTTGACATGATGTTGCTTGCTCACAACGCTGGTGGTAAAGAAAGAACTGAAGAGAACTGGAAATACTTATTCAACGAGACAGGATTCCCTCGTTACAACATCATCAAAATCAATGCTCTGCCATGCATCATTGAGGCATTCCCAGTCTAA
Protein sequence

>Msa0542330

METVLSKHSPPSAFKGVSKEEEESLLGQIEIWKYMTQFTDSFALKAVVELRIADIIDRYGKPLSLTQIVQNLEDAPSPDSTLLLRVMRVMIFSAEKSETGEILYGLTRASKWILQDTKMTLAPMLLLENHPFHLNPANFISEIIKEGTKNGTAFFRCHGHEQFEMTGIVSRAVIAGYKDGFNQIKSLVDVGGGIGGSLSEIVRAYPHIQAINFDLPHVVSTAPNFDGITHVGGDMFVSVPSADAIYMKWILHDWSDDHCIKILKNCRKAIPEKTGKVIIVDHVLDPEGNEPFTDTGIAFDMMLLAHNAGGKERTEENWKYLFNETGFPRYNIIKINALPCIIEAFPV*