AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0413590

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0413590 MtrunA17_Chr3g0106111 93.730 319 3 1 1 302 1 319 0.0 601
Msa0413590 MtrunA17_Chr5g0431311 65.517 319 93 1 1 302 1 319 7.21e-159 445
Msa0413590 MtrunA17_Chr2g0291541 45.483 321 148 5 5 302 10 326 6.81e-97 288
Msa0413590 MtrunA17_Chr3g0077231 42.500 320 163 5 2 302 3 320 1.27e-82 252
Msa0413590 MtrunA17_Chr3g0077221 42.675 314 159 5 5 299 10 321 1.84e-81 249
Msa0413590 MtrunA17_Chr4g0001321 42.405 316 158 5 3 300 15 324 2.30e-75 234
Msa0413590 MtrunA17_Chr2g0333781 41.772 316 160 5 3 300 18 327 1.10e-72 227
Msa0413590 MtrunA17_Chr8g0364051 38.170 317 178 5 3 302 6 321 1.12e-71 224
Msa0413590 MtrunA17_Chr8g0363831 37.855 317 179 5 3 302 7 322 1.35e-71 224
Msa0413590 MtrunA17_Chr4g0039311 37.143 315 179 4 3 299 9 322 6.02e-70 219
Msa0413590 MtrunA17_Chr4g0002661 38.050 318 176 3 2 302 10 323 1.74e-68 216
Msa0413590 MtrunA17_Chr1g0155411 37.231 325 178 7 1 302 4 325 2.08e-66 211
Msa0413590 MtrunA17_Chr4g0039321 36.076 316 181 5 3 299 7 320 4.04e-65 207
Msa0413590 MtrunA17_Chr2g0331211 35.938 320 182 4 1 300 1 317 5.82e-63 202
Msa0413590 MtrunA17_Chr4g0002961 37.736 318 177 3 2 302 10 323 8.83e-62 199
Msa0413590 MtrunA17_Chr1g0155431 35.258 329 179 8 1 302 4 325 2.19e-61 198
Msa0413590 MtrunA17_Chr5g0423551 32.812 320 187 4 6 302 5 319 3.19e-57 187
Msa0413590 MtrunA17_Chr7g0245741 35.866 329 170 11 5 302 8 326 6.78e-55 181
Msa0413590 MtrunA17_Chr7g0245671 34.545 330 176 11 5 302 8 329 1.48e-51 172
Msa0413590 MtrunA17_Chr7g0245691 34.036 332 176 11 5 302 8 330 4.32e-48 163
Msa0413590 MtrunA17_Chr7g0245641 33.634 333 175 12 5 302 45 366 1.11e-47 163
Msa0413590 MtrunA17_Chr7g0245631 33.540 322 187 10 5 302 8 326 1.72e-47 162
Msa0413590 MtrunA17_Chr7g0245731 33.436 326 176 11 5 299 58 373 2.81e-47 162
Msa0413590 MtrunA17_Chr4g0048961 31.420 331 190 9 3 301 12 337 8.10e-46 157
Msa0413590 MtrunA17_Chr4g0042101 32.948 346 166 11 6 302 25 353 1.09e-42 150
Msa0413590 MtrunA17_Chr4g0010991 29.851 335 187 10 4 302 7 329 9.33e-42 147
Msa0413590 MtrunA17_Chr7g0245711 30.479 292 163 10 41 302 7 288 1.44e-32 121
Msa0413590 MtrunA17_Chr2g0281991 30.294 340 184 11 5 300 8 338 4.99e-32 121
Msa0413590 MtrunA17_Chr2g0282011 30.294 340 184 10 5 300 8 338 4.67e-29 114
Msa0413590 MtrunA17_Chr2g0282001 28.107 338 194 9 5 300 7 337 1.13e-28 112
Msa0413590 MtrunA17_Chr5g0411071 29.431 299 182 12 2 282 9 296 1.79e-28 111
Msa0413590 MtrunA17_Chr7g0275521 28.909 339 191 11 5 300 7 338 2.69e-28 111
Msa0413590 MtrunA17_Chr6g0450211 27.304 293 190 7 5 292 55 329 1.34e-19 87.8
Msa0413590 MtrunA17_Chr3g0080551 36.111 108 66 3 101 205 17 124 9.31e-15 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0413590 AT5G58490.1 62.222 315 102 1 5 302 9 323 5.36e-147 416
Msa0413590 AT2G02400.1 45.912 318 151 3 3 302 4 318 6.12e-102 301
Msa0413590 AT1G51410.1 42.633 319 162 5 3 302 7 323 9.18e-83 253
Msa0413590 AT5G19440.1 40.379 317 170 4 3 301 8 323 4.38e-79 243
Msa0413590 AT1G09510.1 40.566 318 170 4 3 302 6 322 5.73e-79 243
Msa0413590 AT1G09480.2 40.252 318 171 4 3 302 6 322 6.59e-79 243
Msa0413590 AT1G09480.1 40.252 318 171 4 3 302 53 369 2.41e-78 243
Msa0413590 AT1G09490.1 37.304 319 179 5 3 302 6 322 8.49e-74 229
Msa0413590 AT1G66800.1 40.063 317 169 4 3 302 6 318 8.04e-73 227
Msa0413590 AT1G15950.3 41.456 316 161 5 3 300 11 320 2.35e-71 224
Msa0413590 AT1G15950.1 41.456 316 161 5 3 300 11 320 2.35e-71 224
Msa0413590 AT1G09500.1 38.125 320 178 5 3 302 6 325 1.64e-70 221
Msa0413590 AT1G15950.2 41.694 307 155 5 3 291 11 311 1.12e-68 217
Msa0413590 AT2G33590.1 38.608 316 172 4 5 302 9 320 2.05e-68 216
Msa0413590 AT1G09500.3 39.114 271 147 3 3 255 6 276 6.11e-66 208
Msa0413590 AT1G80820.1 39.241 316 168 5 3 300 6 315 1.43e-65 209
Msa0413590 AT1G15950.5 42.446 278 134 5 3 263 11 279 4.47e-64 203
Msa0413590 AT1G15950.6 43.071 267 129 4 3 252 11 271 1.94e-63 201
Msa0413590 AT1G15950.4 42.545 275 132 5 3 260 11 276 5.13e-63 201
Msa0413590 AT4G35420.1 35.202 321 178 6 5 302 8 321 5.80e-60 194
Msa0413590 AT2G33600.1 36.909 317 176 4 5 302 9 320 1.06e-59 193
Msa0413590 AT1G80820.2 40.824 267 135 4 3 252 6 266 5.00e-58 187
Msa0413590 AT1G76470.1 35.312 320 185 4 1 300 3 320 8.95e-57 186
Msa0413590 AT1G09490.2 33.684 285 168 5 37 302 9 291 8.17e-56 182
Msa0413590 AT5G42800.1 34.365 323 186 7 3 302 6 325 1.82e-54 182
Msa0413590 AT1G68540.1 31.562 320 191 5 7 302 6 321 4.27e-53 176
Msa0413590 AT1G09500.2 34.965 286 166 5 37 302 6 291 1.68e-52 174
Msa0413590 AT1G61720.1 31.832 333 190 9 2 302 10 337 5.87e-47 161
Msa0413590 AT1G25460.1 32.198 323 183 9 7 302 6 319 4.71e-46 158
Msa0413590 AT1G15950.7 39.189 222 117 3 97 300 1 222 8.82e-41 142
Msa0413590 AT4G27250.2 31.269 323 184 11 4 294 12 328 1.13e-38 139
Msa0413590 AT4G27250.1 30.631 333 183 12 4 294 12 338 2.44e-37 136
Msa0413590 AT2G23910.2 33.061 245 145 6 6 235 11 251 5.26e-36 130
Msa0413590 AT2G23910.3 33.061 245 145 6 6 235 11 251 5.89e-36 130
Msa0413590 AT2G23910.1 33.061 245 145 6 6 235 11 251 9.32e-36 130
Msa0413590 AT2G45400.1 29.448 326 201 9 5 302 40 364 1.88e-34 129
Msa0413590 AT4G30470.1 31.837 245 147 5 6 235 11 250 3.55e-32 121
Msa0413590 AT2G45400.2 29.286 280 170 8 5 257 40 318 3.77e-29 114
Msa0413590 AT1G68540.2 29.384 211 123 4 114 302 8 214 2.25e-27 106
Msa0413590 AT2G23910.4 32.512 203 118 6 48 235 19 217 3.18e-25 102
Msa0413590 AT2G45400.4 32.407 216 132 7 5 207 40 254 5.33e-25 101
Msa0413590 AT2G45400.3 27.152 302 190 9 27 302 10 307 7.47e-22 93.6
Msa0413590 AT5G14700.1 28.247 308 181 11 5 278 55 356 3.76e-19 87.0
Msa0413590 AT5G14700.2 31.797 217 134 7 5 210 55 268 2.27e-17 80.9

Find 115 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAGCTTTGGCACATATTT+TGG 0.069908 3_2:+58088368 Msa0413590:CDS
ATAAATGCAGAAGCAAATTT+TGG 0.164485 3_2:+58084561 Msa0413590:intron
CCAGCTTGAAATGGGATATT+TGG 0.200626 3_2:+58089442 Msa0413590:three_prime_UTR
TCAAAGAAGCTCATTGATTT+AGG 0.207707 3_2:+58088984 Msa0413590:CDS
AAATCTTCTTGTACTGCTAT+TGG 0.246791 3_2:-58089357 None:intergenic
AATTCTTATATGTGAATTCT+TGG 0.276009 3_2:+58089259 Msa0413590:three_prime_UTR
AGAGGTTTAGTTTAACTTCT+TGG 0.285403 3_2:+58089065 Msa0413590:exon
TACTTTGCCACATTATATTC+AGG 0.287776 3_2:-58088483 None:intergenic
GCCATGCTTGAGTTAATTCT+TGG 0.327496 3_2:-58087950 None:intergenic
TCTGCTAGTGTCTTTGCAAT+GGG 0.342685 3_2:-58087842 None:intergenic
TTGACTTCACCGATGATGTT+AGG 0.346694 3_2:-58084440 None:intergenic
TCCTTGATAATTTGTTCTGC+TGG 0.356834 3_2:-58089020 None:intergenic
GAATTCACATATAAGAATTC+TGG 0.362753 3_2:-58089255 None:intergenic
TCCGTAAGAACTAGCATAAC+TGG 0.378382 3_2:-58083785 None:intergenic
AAGTTCTTCACACGAGAGTT+TGG 0.379813 3_2:-58083880 None:intergenic
TTCTGCTAGTGTCTTTGCAA+TGG 0.381819 3_2:-58087843 None:intergenic
CTGGCCAGCTGATAAGATTA+AGG 0.384312 3_2:+58084690 Msa0413590:CDS
CCAGCGGAGCCATCGGATCA+TGG 0.386978 3_2:+58084049 Msa0413590:CDS
AGATTAAGGCAGAGGATTGT+TGG 0.391069 3_2:+58084704 Msa0413590:CDS
TAGAGATTCCATGTATATAT+AGG 0.398244 3_2:-58083938 None:intergenic
ACCAGTTATGCTAGTTCTTA+CGG 0.415281 3_2:+58083784 Msa0413590:five_prime_UTR
TCAAGCATGGCTGTACTTGC+TGG 0.420507 3_2:+58087962 Msa0413590:CDS
ATTCTTATATGTGAATTCTT+GGG 0.428051 3_2:+58089260 Msa0413590:three_prime_UTR
CCATGATCCGATGGCTCCGC+TGG 0.430877 3_2:-58084049 None:intergenic
TTGAAGGTGGCTAAGGAAGC+AGG 0.431210 3_2:+58084613 Msa0413590:CDS
TAGTTTAACTTCTTGGATGC+TGG 0.432365 3_2:+58089072 Msa0413590:exon
TTATGAAAGCGATGCATTGT+TGG 0.437327 3_2:-58083903 None:intergenic
TTCTTTGCTCTCAACAATCC+AGG 0.442395 3_2:-58088957 None:intergenic
TTTGAGCAAAAGAAAGCATC+TGG 0.442607 3_2:+58088393 Msa0413590:CDS
TTAACCGTTCCTTGAATTGC+CGG 0.448671 3_2:-58084586 None:intergenic
ATAGTGGCTAACCAAGATCT+TGG 0.454544 3_2:-58084119 None:intergenic
CCAGCTAGGACTCGGTATAA+TGG 0.455774 3_2:-58084671 None:intergenic
GACAAAGCATTTAGAAGCAA+TGG 0.459202 3_2:+58084313 Msa0413590:CDS
TTAATTCTTGGTGGAATCAA+AGG 0.461807 3_2:-58087938 None:intergenic
GTCACTATTACTATCACCAT+TGG 0.462752 3_2:+58089231 Msa0413590:three_prime_UTR
ATTAACCCTGGTACAGCATT+GGG 0.467964 3_2:+58087914 Msa0413590:CDS
GGACGGTGTAGCCGCGTTCG+AGG 0.468770 3_2:-58084086 None:intergenic
TGGGAATTTGCTAAGGAGAC+TGG 0.471676 3_2:+58087875 Msa0413590:CDS
AAAGGGCCCAATGCTGTACC+AGG 0.472593 3_2:-58087920 None:intergenic
CATGCCACTATCCAAGATCT+TGG 0.473034 3_2:+58084108 Msa0413590:CDS
AATTTGTGTATTCTAATTGT+TGG 0.477366 3_2:+58089330 Msa0413590:three_prime_UTR
ACTTTGCCACATTATATTCA+GGG 0.484954 3_2:-58088482 None:intergenic
GTTGAGTGTTTGAAGAGTAG+AGG 0.490243 3_2:+58089047 Msa0413590:CDS
AACGCCGGCACAACCTTTCA+CGG 0.490466 3_2:-58084402 None:intergenic
ATTCCATGTATATATAGGAC+TGG 0.495734 3_2:-58083933 None:intergenic
ATGCTTGAGTTAATTCTTGG+TGG 0.500088 3_2:-58087947 None:intergenic
TCCGATGGCTCCGCTGGCAC+CGG 0.504784 3_2:-58084043 None:intergenic
TGTAGCCGCGTTCGAGGAGG+AGG 0.505144 3_2:-58084080 None:intergenic
CCATTATACCGAGTCCTAGC+TGG 0.505736 3_2:+58084671 Msa0413590:CDS
TCTATCGCGGCCGCCGTGAA+AGG 0.506890 3_2:+58084389 Msa0413590:CDS
TTGGATGCTGGAGAAACCTA+TGG 0.510568 3_2:+58089084 Msa0413590:three_prime_UTR
GGAAGCAGGGGTGGAGCGTG+TGG 0.514670 3_2:+58084627 Msa0413590:CDS
GATTAACCCTGGTACAGCAT+TGG 0.515872 3_2:+58087913 Msa0413590:CDS
ACCGGTGCCAGCGGAGCCAT+CGG 0.516306 3_2:+58084042 Msa0413590:CDS
CAGCGGAGCCATCGGATCAT+GGG 0.518564 3_2:+58084050 Msa0413590:CDS
GCCGCCGTGAAAGGTTGTGC+CGG 0.519589 3_2:+58084398 Msa0413590:CDS
CCAAATATCCCATTTCAAGC+TGG 0.521297 3_2:-58089442 None:intergenic
TGAGTATTGCAAGGAAAAGA+AGG 0.523447 3_2:+58084735 Msa0413590:CDS
AGCTGGTTGGGAATTTGCTA+AGG 0.526723 3_2:+58087868 Msa0413590:CDS
ATCTTATCAGCTGGCCAGCT+AGG 0.529728 3_2:-58084685 None:intergenic
AGCAGGGGTGGAGCGTGTGG+TGG 0.530266 3_2:+58084630 Msa0413590:CDS
AGCTGATAAGATTAAGGCAG+AGG 0.531575 3_2:+58084696 Msa0413590:CDS
CGATTTAGTAATTCAAGATG+TGG 0.534368 3_2:-58083973 None:intergenic
AGGAACGGTTAACGTGTTGA+AGG 0.536664 3_2:+58084597 Msa0413590:CDS
TCAAAGTCAGTTTGTGTCAC+CGG 0.536966 3_2:+58084024 Msa0413590:CDS
GGTGGCTAAGGAAGCAGGGG+TGG 0.537366 3_2:+58084618 Msa0413590:CDS
TCCAGCAGAACAAATTATCA+AGG 0.537697 3_2:+58089019 Msa0413590:CDS
TAATTCTTGGTGGAATCAAA+GGG 0.538145 3_2:-58087937 None:intergenic
TAACGTGTTGAAGGTGGCTA+AGG 0.542412 3_2:+58084606 Msa0413590:CDS
TCAGCTGGCCAGCTAGGACT+CGG 0.545430 3_2:-58084679 None:intergenic
ATCTTGGATAGTGGCATGGA+CGG 0.550916 3_2:-58084103 None:intergenic
ATAACTAGCATGTTAAATAA+CGG 0.554040 3_2:+58089194 Msa0413590:three_prime_UTR
GTACTTGCTGGTGTTCTCAA+AGG 0.557883 3_2:+58087974 Msa0413590:CDS
TTCCATGTATATATAGGACT+GGG 0.567567 3_2:-58083932 None:intergenic
TCTGCCTTAATCTTATCAGC+TGG 0.568032 3_2:-58084694 None:intergenic
TTCCCAGTCCTATATATACA+TGG 0.571103 3_2:+58083930 Msa0413590:five_prime_UTR
ATATAAGAATTCTGGTCCAA+TGG 0.572177 3_2:-58089247 None:intergenic
ATACCGACGGATACTCAACC+TGG 0.573524 3_2:+58088939 Msa0413590:CDS
CTAACCAAGATCTTGGATAG+TGG 0.575145 3_2:-58084112 None:intergenic
CTTGAAATGGGATATTTGGA+AGG 0.576853 3_2:+58089446 Msa0413590:three_prime_UTR
ACACTGTATTCAGCCACCAT+AGG 0.577642 3_2:-58089100 None:intergenic
GTTTGTGTCACCGGTGCCAG+CGG 0.578206 3_2:+58084033 Msa0413590:CDS
GGAACCGGCAATTCAAGGAA+CGG 0.586602 3_2:+58084582 Msa0413590:CDS
TACAGTGTGACATGTGATGA+TGG 0.586964 3_2:+58089115 Msa0413590:three_prime_UTR
TTGAAATGGGATATTTGGAA+GGG 0.588754 3_2:+58089447 Msa0413590:three_prime_UTR
GACACAAACTGACTTTGACA+TGG 0.589619 3_2:-58084019 None:intergenic
GCGAACCACCCATGATCCGA+TGG 0.590987 3_2:-58084058 None:intergenic
GACGGACCTTGAGTATTGCA+AGG 0.594503 3_2:+58084726 Msa0413590:CDS
TGAAGGTGGCTAAGGAAGCA+GGG 0.599054 3_2:+58084614 Msa0413590:CDS
TCTTAACAGCGACTCTATCG+CGG 0.604006 3_2:+58084376 Msa0413590:CDS
CAAGATCTTGGATAGTGGCA+TGG 0.604987 3_2:-58084107 None:intergenic
CGGAGCCATCGGATCATGGG+TGG 0.610944 3_2:+58084053 Msa0413590:CDS
CTGCTAGTGTCTTTGCAATG+GGG 0.611325 3_2:-58087841 None:intergenic
CTTGCATGTCCTAACATCAT+CGG 0.615491 3_2:+58084431 Msa0413590:CDS
AGCAAAAGAAAGCATCTGGA+AGG 0.619285 3_2:+58088397 Msa0413590:CDS
ACCAAGAATTAACTCAAGCA+TGG 0.623084 3_2:+58087949 Msa0413590:CDS
TAAGGCAGAGGATTGTTGGA+CGG 0.625388 3_2:+58084708 Msa0413590:CDS
GTTATACCCTGAATATAATG+TGG 0.634043 3_2:+58088476 Msa0413590:CDS
AACGGTTAACGTGTTGAAGG+TGG 0.640545 3_2:+58084600 Msa0413590:CDS
CGGTGTAGCCGCGTTCGAGG+AGG 0.648737 3_2:-58084083 None:intergenic
CGATGATGTTAGGACATGCA+AGG 0.649220 3_2:-58084430 None:intergenic
GTTCGCCTCCTCCTCGAACG+CGG 0.652562 3_2:+58084075 Msa0413590:CDS
TAATTATTATAGGATACCGA+CGG 0.657416 3_2:+58088926 Msa0413590:intron
AAGCATTTAGAAGCAATGGA+AGG 0.658324 3_2:+58084317 Msa0413590:CDS
GATGTGGTGATGATTAACCC+TGG 0.670169 3_2:+58087902 Msa0413590:CDS
ATTATATTCAGGGTATAACT+CGG 0.673455 3_2:-58088472 None:intergenic
ACATGCAAGGTGTATAACGC+CGG 0.674006 3_2:-58084417 None:intergenic
AATCCAGGTTGAGTATCCGT+CGG 0.675345 3_2:-58088942 None:intergenic
GAAGGTGGCTAAGGAAGCAG+GGG 0.676782 3_2:+58084615 Msa0413590:CDS
ATCTGGAAGGCATTTGTGTG+TGG 0.681001 3_2:+58088410 Msa0413590:CDS
GATGCTGGAGAAACCTATGG+TGG 0.694655 3_2:+58089087 Msa0413590:three_prime_UTR
CGGTGAAGTCAAAGACCCCG+AGG 0.705107 3_2:+58084451 Msa0413590:CDS
AAGGGCCCAATGCTGTACCA+GGG 0.707459 3_2:-58087919 None:intergenic
GCTAGGACTCGGTATAATGG+CGG 0.711217 3_2:-58084668 None:intergenic
GCCGGCACAACCTTTCACGG+CGG 0.757026 3_2:-58084399 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCATAATAATATGAAAAA+AGG + chr3_2:58084797-58084816 Msa0413590:intron 10.0%
!!! TTTATTTTTTATATCAATAG+TGG - chr3_2:58085076-58085095 None:intergenic 10.0%
!! CAAAAGAAATAAAAATATTT+AGG - chr3_2:58085350-58085369 None:intergenic 10.0%
!! CTAAAAATTAAATGAAAATT+TGG - chr3_2:58087748-58087767 None:intergenic 10.0%
!! TATTGAGTAAATTAAATAAA+AGG + chr3_2:58088893-58088912 Msa0413590:intron 10.0%
!! TATTCATTTATTATTATGTG+AGG - chr3_2:58084178-58084197 None:intergenic 15.0%
!! AACACCAAAATTAATTAATA+TGG - chr3_2:58084533-58084552 None:intergenic 15.0%
!!! TATTTCAAACAAGATTTTTA+TGG - chr3_2:58084968-58084987 None:intergenic 15.0%
!!! TGTTTGAAATATTTATCATT+AGG + chr3_2:58084977-58084996 Msa0413590:intron 15.0%
!!! AGTTATTGACAAATATTTTT+TGG + chr3_2:58085743-58085762 Msa0413590:intron 15.0%
!!! GTTATTGACAAATATTTTTT+GGG + chr3_2:58085744-58085763 Msa0413590:intron 15.0%
!!! TTGTTGTTAATTTTTTTTAG+TGG - chr3_2:58086030-58086049 None:intergenic 15.0%
!! AAAAAAATATAAAATCTCGA+TGG + chr3_2:58086422-58086441 Msa0413590:intron 15.0%
!!! TATTTCAGTTACATTTATTT+TGG + chr3_2:58088510-58088529 Msa0413590:intron 15.0%
!!! GGTAATTACTATATTTTTTT+GGG - chr3_2:58088666-58088685 None:intergenic 15.0%
!!! AGGTAATTACTATATTTTTT+TGG - chr3_2:58088667-58088686 None:intergenic 15.0%
!! ATTGTACGTTTAATTATTAT+AGG + chr3_2:58088916-58088935 Msa0413590:intron 15.0%
!! GTAACAAAACTAAAAATAAA+AGG - chr3_2:58089403-58089422 None:intergenic 15.0%
!!! TGGTCCATATTAATTAATTT+TGG + chr3_2:58084526-58084545 Msa0413590:intron 20.0%
!!! TTAGATCTTTAAAATGTGTT+TGG + chr3_2:58084923-58084942 Msa0413590:intron 20.0%
!! AAATATTTATCATTAGGAGT+AGG + chr3_2:58084983-58085002 Msa0413590:intron 20.0%
!!! ACTTTAGAGACTAATAAAAA+GGG - chr3_2:58085050-58085069 None:intergenic 20.0%
!!! AACTTTAGAGACTAATAAAA+AGG - chr3_2:58085051-58085070 None:intergenic 20.0%
!!! TGTTGATTATAAGTTATTGT+TGG + chr3_2:58085264-58085283 Msa0413590:intron 20.0%
!!! TTTCTTTTGAGAAAATTGTA+TGG + chr3_2:58085361-58085380 Msa0413590:intron 20.0%
!! AAACCTAAATATAAAGGTTA+TGG + chr3_2:58085403-58085422 Msa0413590:intron 20.0%
!! AAATAAAAAAGAATTAGGCT+AGG - chr3_2:58085523-58085542 None:intergenic 20.0%
!! TATGTTAGTGAAATTAAACT+AGG - chr3_2:58085594-58085613 None:intergenic 20.0%
!!! TAATTTTTTTTAGTGGCATA+TGG - chr3_2:58086023-58086042 None:intergenic 20.0%
!!! TTTTGTTTTCTAAAGCATTT+TGG + chr3_2:58086184-58086203 Msa0413590:intron 20.0%
!! TTATGTAATTATTACTTTCC+AGG - chr3_2:58086269-58086288 None:intergenic 20.0%
!! ATTGTTTAAGCAATTAAAAG+AGG - chr3_2:58086313-58086332 None:intergenic 20.0%
!! AATTGCTTAAACAATGTATA+AGG + chr3_2:58086318-58086337 Msa0413590:intron 20.0%
!! ATTGCTTAAACAATGTATAA+GGG + chr3_2:58086319-58086338 Msa0413590:intron 20.0%
!! TATTTGTGTAAAATGTCAAA+GGG - chr3_2:58086400-58086419 None:intergenic 20.0%
!! ATATTTGTGTAAAATGTCAA+AGG - chr3_2:58086401-58086420 None:intergenic 20.0%
!! AAGTGAAACATTATTTAAAG+AGG + chr3_2:58087295-58087314 Msa0413590:intron 20.0%
!! CGAAATAAACATTATACATA+TGG - chr3_2:58087566-58087585 None:intergenic 20.0%
!! TTAAATTATATTCCAACATG+TGG - chr3_2:58087725-58087744 None:intergenic 20.0%
!!! CTTATCAATTATTTTGTCAT+TGG - chr3_2:58087790-58087809 None:intergenic 20.0%
!! CAATGACAAAATAATTGATA+AGG + chr3_2:58087788-58087807 Msa0413590:intron 20.0%
!!! GCAAATTATTTTTGAGTTTA+TGG + chr3_2:58088016-58088035 Msa0413590:intron 20.0%
!! TTGAGTTTATGGTTTAAATT+TGG + chr3_2:58088027-58088046 Msa0413590:intron 20.0%
!! ACATGAATGAATACATTTAA+AGG - chr3_2:58088687-58088706 None:intergenic 20.0%
!!! CTCAATAATTTTTACCAAAT+CGG - chr3_2:58088880-58088899 None:intergenic 20.0%
!! ATAACTAGCATGTTAAATAA+CGG + chr3_2:58089194-58089213 Msa0413590:three_prime_UTR 20.0%
!! AATTCTTATATGTGAATTCT+TGG + chr3_2:58089259-58089278 Msa0413590:three_prime_UTR 20.0%
!! ATTCTTATATGTGAATTCTT+GGG + chr3_2:58089260-58089279 Msa0413590:three_prime_UTR 20.0%
!! AATTTGTGTATTCTAATTGT+TGG + chr3_2:58089330-58089349 Msa0413590:three_prime_UTR 20.0%
!! AATACAATCTCGATTTTATG+CGG + chr3_2:58083809-58083828 Msa0413590:five_prime_UTR 25.0%
! TAGAGATTCCATGTATATAT+AGG - chr3_2:58083941-58083960 None:intergenic 25.0%
!!! TCGTCTCAAATTTTTTGAAA+TGG + chr3_2:58084349-58084368 Msa0413590:CDS 25.0%
!!! AATAAATTGTTTTGGAACCT+CGG - chr3_2:58084471-58084490 None:intergenic 25.0%
!! TTGCATAGTTCAATTTTATG+TGG + chr3_2:58084506-58084525 Msa0413590:intron 25.0%
!! ATAAATGCAGAAGCAAATTT+TGG + chr3_2:58084561-58084580 Msa0413590:intron 25.0%
! TTAATCAGAAATCCTTCAAA+AGG - chr3_2:58084825-58084844 None:intergenic 25.0%
!! GTAATTTTTGAATCTTCAAG+AGG + chr3_2:58085188-58085207 Msa0413590:intron 25.0%
! ATGTATAAAAACACATGTTC+TGG - chr3_2:58085327-58085346 None:intergenic 25.0%
! TGTCCATAACCTTTATATTT+AGG - chr3_2:58085409-58085428 None:intergenic 25.0%
! TCTACAATTCTTAATAGTGT+AGG - chr3_2:58085651-58085670 None:intergenic 25.0%
! CATTTATAAATCCAAAACAG+AGG - chr3_2:58085859-58085878 None:intergenic 25.0%
! ATGAACAATGAAAGAATGAA+AGG + chr3_2:58085876-58085895 Msa0413590:intron 25.0%
! TGAACAATGAAAGAATGAAA+GGG + chr3_2:58085877-58085896 Msa0413590:intron 25.0%
!!! CATGATGATGAATTCATTTT+GGG + chr3_2:58085943-58085962 Msa0413590:intron 25.0%
! AAATAAACGAAAGATATCCA+AGG + chr3_2:58086366-58086385 Msa0413590:intron 25.0%
! AATAAACGAAAGATATCCAA+GGG + chr3_2:58086367-58086386 Msa0413590:intron 25.0%
!! ATTATTTAGTGTGTGGTTTT+CGG - chr3_2:58086727-58086746 None:intergenic 25.0%
!! CTAGAATTTTCAATAACCAA+AGG - chr3_2:58087146-58087165 None:intergenic 25.0%
!! TTCATTTTGAATGTTGGAAT+GGG - chr3_2:58087251-58087270 None:intergenic 25.0%
!! TGTTTGTTCATTTTGAATGT+TGG - chr3_2:58087257-58087276 None:intergenic 25.0%
! AAATGAACAAACAAGTTATG+TGG + chr3_2:58087264-58087283 Msa0413590:intron 25.0%
! AATAAGAAAATTGTCGATGA+AGG + chr3_2:58087338-58087357 Msa0413590:intron 25.0%
! AACCTCATGATTTAATAATG+AGG - chr3_2:58087440-58087459 None:intergenic 25.0%
! ATAATGTTTATTTCGTCTTG+TGG + chr3_2:58087571-58087590 Msa0413590:intron 25.0%
!! AAAATCCCCAATTTTATTGA+TGG + chr3_2:58087654-58087673 Msa0413590:intron 25.0%
! ATAAGGTTTACATTATGTTG+TGG + chr3_2:58087805-58087824 Msa0413590:intron 25.0%
! TAAGGTTTACATTATGTTGT+GGG + chr3_2:58087806-58087825 Msa0413590:intron 25.0%
!! TTTTATAAGCTACTAGAATG+AGG + chr3_2:58088271-58088290 Msa0413590:intron 25.0%
!!! TCATTTTAAAGACATAGCTT+TGG + chr3_2:58088356-58088375 Msa0413590:intron 25.0%
!! CTATAGTGATTTTGTGAATT+TGG + chr3_2:58088446-58088465 Msa0413590:CDS 25.0%
! ATTATATTCAGGGTATAACT+CGG - chr3_2:58088475-58088494 None:intergenic 25.0%
! TAATTATTATAGGATACCGA+CGG + chr3_2:58088926-58088945 Msa0413590:intron 25.0%
! GAATTCACATATAAGAATTC+TGG - chr3_2:58089258-58089277 None:intergenic 25.0%
!!! ATTCTTGGGTTTTATAAGAT+TGG + chr3_2:58089274-58089293 Msa0413590:three_prime_UTR 25.0%
TTCCATGTATATATAGGACT+GGG - chr3_2:58083935-58083954 None:intergenic 30.0%
ATTCCATGTATATATAGGAC+TGG - chr3_2:58083936-58083955 None:intergenic 30.0%
CGATTTAGTAATTCAAGATG+TGG - chr3_2:58083976-58083995 None:intergenic 30.0%
CTTGTGCAATATACATATAG+TGG - chr3_2:58084138-58084157 None:intergenic 30.0%
TTGTGACACATAATTTACAG+AGG + chr3_2:58084280-58084299 Msa0413590:intron 30.0%
!!! ATAAATTGTTTTGGAACCTC+GGG - chr3_2:58084470-58084489 None:intergenic 30.0%
! TGAAAAAAGGATCCTTTTGA+AGG + chr3_2:58084810-58084829 Msa0413590:intron 30.0%
!! GATCTTTAAAATGTGTTTGG+TGG + chr3_2:58084926-58084945 Msa0413590:intron 30.0%
TATTTATCATTAGGAGTAGG+AGG + chr3_2:58084986-58085005 Msa0413590:intron 30.0%
AAAATAAAGTTCACCCTTAG+TGG + chr3_2:58085088-58085107 Msa0413590:intron 30.0%
GAGGAATAGAGATCAATTTA+TGG + chr3_2:58085115-58085134 Msa0413590:intron 30.0%
TTGTATGGCCAATTCTTATT+TGG + chr3_2:58085376-58085395 Msa0413590:intron 30.0%
GTTTGTGACCAAATAAGAAT+TGG - chr3_2:58085387-58085406 None:intergenic 30.0%
GGTCACAAACCTAAATATAA+AGG + chr3_2:58085397-58085416 Msa0413590:intron 30.0%
TCTAATGATCAACACTTGTT+TGG - chr3_2:58085556-58085575 None:intergenic 30.0%
TTGTATCAATCACACAATAG+AGG - chr3_2:58085691-58085710 None:intergenic 30.0%
!! GCATGATGATGAATTCATTT+TGG + chr3_2:58085942-58085961 Msa0413590:intron 30.0%
!!! TTTTTTTAGTGGCATATGGT+TGG - chr3_2:58086019-58086038 None:intergenic 30.0%
ATGAGAGTCATATCATTTGA+TGG - chr3_2:58086112-58086131 None:intergenic 30.0%
CAAAATGAGAAATTCTATCC+TGG + chr3_2:58086248-58086267 Msa0413590:intron 30.0%
! AGCGTTTGATTTCTCTTATA+TGG - chr3_2:58086542-58086561 None:intergenic 30.0%
AAAAAAGAACAAGGGGAAAT+CGG + chr3_2:58086644-58086663 Msa0413590:intron 30.0%
! TGAAATTAAAGCGCTTTCTT+GGG - chr3_2:58087100-58087119 None:intergenic 30.0%
! ATGAAATTAAAGCGCTTTCT+TGG - chr3_2:58087101-58087120 None:intergenic 30.0%
! ACACTACTATTTGGGTTATT+TGG - chr3_2:58087182-58087201 None:intergenic 30.0%
! AGAGAATTAAGAAGGGTTTT+TGG - chr3_2:58087215-58087234 None:intergenic 30.0%
! TCATTTTGAATGTTGGAATG+GGG - chr3_2:58087250-58087269 None:intergenic 30.0%
! GTTCATTTTGAATGTTGGAA+TGG - chr3_2:58087252-58087271 None:intergenic 30.0%
! GAAGGTTGACTCAATTAATA+AGG + chr3_2:58087356-58087375 Msa0413590:intron 30.0%
GACCTCATTATTAAATCATG+AGG + chr3_2:58087435-58087454 Msa0413590:intron 30.0%
!!! GATTTTATTTTCAGAGGAGT+TGG - chr3_2:58087640-58087659 None:intergenic 30.0%
!!! ATTGGGGATTTTATTTTCAG+AGG - chr3_2:58087646-58087665 None:intergenic 30.0%
GTACACCATCAATAAAATTG+GGG - chr3_2:58087662-58087681 None:intergenic 30.0%
GGTACACCATCAATAAAATT+GGG - chr3_2:58087663-58087682 None:intergenic 30.0%
AATAATTCATCACCACATGT+TGG + chr3_2:58087710-58087729 Msa0413590:intron 30.0%
TAATTCTTGGTGGAATCAAA+GGG - chr3_2:58087940-58087959 None:intergenic 30.0%
TTAATTCTTGGTGGAATCAA+AGG - chr3_2:58087941-58087960 None:intergenic 30.0%
GTCACATTCATTAAGTTTAG+AGG - chr3_2:58088070-58088089 None:intergenic 30.0%
AATGTCAAGTAGTTAAGACA+GGG - chr3_2:58088158-58088177 None:intergenic 30.0%
AAATGTCAAGTAGTTAAGAC+AGG - chr3_2:58088159-58088178 None:intergenic 30.0%
GTCTTAACTACTTGACATTT+AGG + chr3_2:58088159-58088178 Msa0413590:intron 30.0%
TGATTATGATACGTTGACAA+TGG + chr3_2:58088195-58088214 Msa0413590:intron 30.0%
TATTGGGACCTTCTTATTAT+AGG + chr3_2:58088294-58088313 Msa0413590:intron 30.0%
!!! ATAGCTTTGGCACATATTTT+GGG + chr3_2:58088369-58088388 Msa0413590:CDS 30.0%
GTTATACCCTGAATATAATG+TGG + chr3_2:58088476-58088495 Msa0413590:CDS 30.0%
ACTTTGCCACATTATATTCA+GGG - chr3_2:58088485-58088504 None:intergenic 30.0%
TACTTTGCCACATTATATTC+AGG - chr3_2:58088486-58088505 None:intergenic 30.0%
TTGTAGAATATCCAAACCTA+AGG + chr3_2:58088847-58088866 Msa0413590:intron 30.0%
!! TCAAAGAAGCTCATTGATTT+AGG + chr3_2:58088984-58089003 Msa0413590:CDS 30.0%
! AGAGGTTTAGTTTAACTTCT+TGG + chr3_2:58089065-58089084 Msa0413590:exon 30.0%
ATATAAGAATTCTGGTCCAA+TGG - chr3_2:58089250-58089269 None:intergenic 30.0%
AAATCTTCTTGTACTGCTAT+TGG - chr3_2:58089360-58089379 None:intergenic 30.0%
! AAGTTTTTCCAGCTTGAAAT+GGG + chr3_2:58089434-58089453 Msa0413590:three_prime_UTR 30.0%
TTGAAATGGGATATTTGGAA+GGG + chr3_2:58089447-58089466 Msa0413590:three_prime_UTR 30.0%
! ACCAGTTATGCTAGTTCTTA+CGG + chr3_2:58083784-58083803 Msa0413590:five_prime_UTR 35.0%
TTATGAAAGCGATGCATTGT+TGG - chr3_2:58083906-58083925 None:intergenic 35.0%
TTCCCAGTCCTATATATACA+TGG + chr3_2:58083930-58083949 Msa0413590:five_prime_UTR 35.0%
! GACAAAGCATTTAGAAGCAA+TGG + chr3_2:58084313-58084332 Msa0413590:CDS 35.0%
AAGCATTTAGAAGCAATGGA+AGG + chr3_2:58084317-58084336 Msa0413590:CDS 35.0%
!!! TAAATTGTTTTGGAACCTCG+GGG - chr3_2:58084469-58084488 None:intergenic 35.0%
! TCTTTTCCTTGCAATACTCA+AGG - chr3_2:58084735-58084754 None:intergenic 35.0%
! TGAGTATTGCAAGGAAAAGA+AGG + chr3_2:58084735-58084754 Msa0413590:CDS 35.0%
ATCAATGTGACTTTGAGTGT+GGG - chr3_2:58085162-58085181 None:intergenic 35.0%
!! TAGCGAGACACTTTTTGTAA+AGG - chr3_2:58085228-58085247 None:intergenic 35.0%
!!! ATGAATTCATTTTGGGACAC+TGG + chr3_2:58085950-58085969 Msa0413590:intron 35.0%
GGTGGAGAAAAAAAGAACAA+GGG + chr3_2:58086636-58086655 Msa0413590:intron 35.0%
GTGGAGAAAAAAAGAACAAG+GGG + chr3_2:58086637-58086656 Msa0413590:intron 35.0%
CAGCATCATTATTTAGTGTG+TGG - chr3_2:58086734-58086753 None:intergenic 35.0%
!!! TGTTTTTTGCTGCTGCATAA+GGG - chr3_2:58086937-58086956 None:intergenic 35.0%
!!! TTGTTTTTTGCTGCTGCATA+AGG - chr3_2:58086938-58086957 None:intergenic 35.0%
CTTCTATTTAGACATTCTCG+AGG + chr3_2:58087015-58087034 Msa0413590:intron 35.0%
GATTTGGCACACTACTATTT+GGG - chr3_2:58087190-58087209 None:intergenic 35.0%
! TGATTTGGCACACTACTATT+TGG - chr3_2:58087191-58087210 None:intergenic 35.0%
!!! AGAAGGGTTTTTGGTTGATT+TGG - chr3_2:58087206-58087225 None:intergenic 35.0%
CACTCGAAGAGAATTAAGAA+GGG - chr3_2:58087222-58087241 None:intergenic 35.0%
AAGACGAACTTAAGACTGTA+GGG - chr3_2:58087529-58087548 None:intergenic 35.0%
AGTCTTAAGTTCGTCTTCTA+TGG + chr3_2:58087532-58087551 Msa0413590:intron 35.0%
GGGTACACCATCAATAAAAT+TGG - chr3_2:58087664-58087683 None:intergenic 35.0%
AAGTTGAACCTTTCACATCA+GGG - chr3_2:58087684-58087703 None:intergenic 35.0%
AAAGTTGAACCTTTCACATC+AGG - chr3_2:58087685-58087704 None:intergenic 35.0%
ATGCTTGAGTTAATTCTTGG+TGG - chr3_2:58087950-58087969 None:intergenic 35.0%
ACCAAGAATTAACTCAAGCA+TGG + chr3_2:58087949-58087968 Msa0413590:CDS 35.0%
! AGTAGTTAAGACAGGGTTTT+AGG - chr3_2:58088151-58088170 None:intergenic 35.0%
GTTACACGTCTAATATGACT+TGG + chr3_2:58088235-58088254 Msa0413590:intron 35.0%
AAGCTACTAGAATGAGGTAT+TGG + chr3_2:58088277-58088296 Msa0413590:intron 35.0%
! AGCTACTAGAATGAGGTATT+GGG + chr3_2:58088278-58088297 Msa0413590:intron 35.0%
CTTTGTCGCCTATAATAAGA+AGG - chr3_2:58088305-58088324 None:intergenic 35.0%
ACATATGAGGACTTCTTCAT+GGG + chr3_2:58088327-58088346 Msa0413590:intron 35.0%
!!! CATAGCTTTGGCACATATTT+TGG + chr3_2:58088368-58088387 Msa0413590:CDS 35.0%
!! TTTGAGCAAAAGAAAGCATC+TGG + chr3_2:58088393-58088412 Msa0413590:CDS 35.0%
TCCAGCAGAACAAATTATCA+AGG + chr3_2:58089019-58089038 Msa0413590:CDS 35.0%
!! TCCTTGATAATTTGTTCTGC+TGG - chr3_2:58089023-58089042 None:intergenic 35.0%
! TAGTTTAACTTCTTGGATGC+TGG + chr3_2:58089072-58089091 Msa0413590:exon 35.0%
GTCACTATTACTATCACCAT+TGG + chr3_2:58089231-58089250 Msa0413590:three_prime_UTR 35.0%
! GAAGTTTTTCCAGCTTGAAA+TGG + chr3_2:58089433-58089452 Msa0413590:three_prime_UTR 35.0%
CTTGAAATGGGATATTTGGA+AGG + chr3_2:58089446-58089465 Msa0413590:three_prime_UTR 35.0%
TCCGTAAGAACTAGCATAAC+TGG - chr3_2:58083788-58083807 None:intergenic 40.0%
AAGTTCTTCACACGAGAGTT+TGG - chr3_2:58083883-58083902 None:intergenic 40.0%
! GACACAAACTGACTTTGACA+TGG - chr3_2:58084022-58084041 None:intergenic 40.0%
TCAAAGTCAGTTTGTGTCAC+CGG + chr3_2:58084024-58084043 Msa0413590:CDS 40.0%
CTAACCAAGATCTTGGATAG+TGG - chr3_2:58084115-58084134 None:intergenic 40.0%
ATAGTGGCTAACCAAGATCT+TGG - chr3_2:58084122-58084141 None:intergenic 40.0%
CACAACTTATGCATGCACTA+AGG + chr3_2:58084235-58084254 Msa0413590:intron 40.0%
CTTGCATGTCCTAACATCAT+CGG + chr3_2:58084431-58084450 Msa0413590:CDS 40.0%
TTGACTTCACCGATGATGTT+AGG - chr3_2:58084443-58084462 None:intergenic 40.0%
!!! GCAGAAGCAAATTTTGGAAC+CGG + chr3_2:58084567-58084586 Msa0413590:intron 40.0%
!!! ATTTTGGAACCGGCAATTCA+AGG + chr3_2:58084577-58084596 Msa0413590:CDS 40.0%
TTAACCGTTCCTTGAATTGC+CGG - chr3_2:58084589-58084608 None:intergenic 40.0%
TCTGCCTTAATCTTATCAGC+TGG - chr3_2:58084697-58084716 None:intergenic 40.0%
AGCTGATAAGATTAAGGCAG+AGG + chr3_2:58084696-58084715 Msa0413590:CDS 40.0%
AGATTAAGGCAGAGGATTGT+TGG + chr3_2:58084704-58084723 Msa0413590:CDS 40.0%
AAAGTTCACCCTTAGTGGAA+AGG + chr3_2:58085093-58085112 Msa0413590:intron 40.0%
CTATTCCTCCTTTCCACTAA+GGG - chr3_2:58085104-58085123 None:intergenic 40.0%
TCTATTCCTCCTTTCCACTA+AGG - chr3_2:58085105-58085124 None:intergenic 40.0%
CATCAATGTGACTTTGAGTG+TGG - chr3_2:58085163-58085182 None:intergenic 40.0%
CATATGGTTGGATATAGGGA+GGG - chr3_2:58086007-58086026 None:intergenic 40.0%
GTGGCATATGGTTGGATATA+GGG - chr3_2:58086011-58086030 None:intergenic 40.0%
AGTGGCATATGGTTGGATAT+AGG - chr3_2:58086012-58086031 None:intergenic 40.0%
GGGTGGAGAAAAAAAGAACA+AGG + chr3_2:58086635-58086654 Msa0413590:intron 40.0%
CGGTTGCCATTACAATTTAC+CGG + chr3_2:58086664-58086683 Msa0413590:intron 40.0%
TTCGAGCCGGTAAATTGTAA+TGG - chr3_2:58086673-58086692 None:intergenic 40.0%
!!! CTTTTTGGGGTGGTTTTTAG+GGG - chr3_2:58086702-58086721 None:intergenic 40.0%
!!! CCTTTTTGGGGTGGTTTTTA+GGG - chr3_2:58086703-58086722 None:intergenic 40.0%
!!! TCCTTTTTGGGGTGGTTTTT+AGG - chr3_2:58086704-58086723 None:intergenic 40.0%
! TGTGGTTTTCGGTCCTTTTT+GGG - chr3_2:58086716-58086735 None:intergenic 40.0%
!!! TGCTGTTTCTGCAGTTTTTG+GGG - chr3_2:58086878-58086897 None:intergenic 40.0%
!!! GTGCTGTTTCTGCAGTTTTT+GGG - chr3_2:58086879-58086898 None:intergenic 40.0%
!!! GTTGGCTTTGGTAGTGTTTT+TGG - chr3_2:58086961-58086980 None:intergenic 40.0%
! ATTGAATCTGCAAAGGGTGT+TGG - chr3_2:58086979-58086998 None:intergenic 40.0%
AACACCCTTTGCAGATTCAA+TGG + chr3_2:58086978-58086997 Msa0413590:intron 40.0%
CTGTCCATTGAATCTGCAAA+GGG - chr3_2:58086985-58087004 None:intergenic 40.0%
! TTAAAGCGCTTTCTTGGGTT+TGG - chr3_2:58087095-58087114 None:intergenic 40.0%
CAATAACCAAAGGAAGAACG+TGG - chr3_2:58087136-58087155 None:intergenic 40.0%
GCACTCGAAGAGAATTAAGA+AGG - chr3_2:58087223-58087242 None:intergenic 40.0%
GAAGACGAACTTAAGACTGT+AGG - chr3_2:58087530-58087549 None:intergenic 40.0%
TTGCAATGGGGTAGTATAAC+TGG - chr3_2:58087832-58087851 None:intergenic 40.0%
TCTGCTAGTGTCTTTGCAAT+GGG - chr3_2:58087845-58087864 None:intergenic 40.0%
TTCTGCTAGTGTCTTTGCAA+TGG - chr3_2:58087846-58087865 None:intergenic 40.0%
AAGACACTAGCAGAAAAAGC+TGG + chr3_2:58087851-58087870 Msa0413590:CDS 40.0%
ACTAGCAGAAAAAGCTGGTT+GGG + chr3_2:58087856-58087875 Msa0413590:CDS 40.0%
!!! TAAGGAGACTGGTTTTGATG+TGG + chr3_2:58087886-58087905 Msa0413590:CDS 40.0%
ATTAACCCTGGTACAGCATT+GGG + chr3_2:58087914-58087933 Msa0413590:CDS 40.0%
GCCATGCTTGAGTTAATTCT+TGG - chr3_2:58087953-58087972 None:intergenic 40.0%
GACATATGAGGACTTCTTCA+TGG + chr3_2:58088326-58088345 Msa0413590:intron 40.0%
!! AGCAAAAGAAAGCATCTGGA+AGG + chr3_2:58088397-58088416 Msa0413590:CDS 40.0%
ACAACTTCTTCACAATGCAG+TGG + chr3_2:58088745-58088764 Msa0413590:intron 40.0%
TCGGCTATAAACCTTAGGTT+TGG - chr3_2:58088861-58088880 None:intergenic 40.0%
CCAAATCGGCTATAAACCTT+AGG - chr3_2:58088866-58088885 None:intergenic 40.0%
CCTAAGGTTTATAGCCGATT+TGG + chr3_2:58088863-58088882 Msa0413590:intron 40.0%
TTCTTTGCTCTCAACAATCC+AGG - chr3_2:58088960-58088979 None:intergenic 40.0%
GTTGAGTGTTTGAAGAGTAG+AGG + chr3_2:58089047-58089066 Msa0413590:CDS 40.0%
TACAGTGTGACATGTGATGA+TGG + chr3_2:58089115-58089134 Msa0413590:three_prime_UTR 40.0%
CCAAATATCCCATTTCAAGC+TGG - chr3_2:58089445-58089464 None:intergenic 40.0%
CCAGCTTGAAATGGGATATT+TGG + chr3_2:58089442-58089461 Msa0413590:three_prime_UTR 40.0%
! ATCTTGGATAGTGGCATGGA+CGG - chr3_2:58084106-58084125 None:intergenic 45.0%
! CAAGATCTTGGATAGTGGCA+TGG - chr3_2:58084110-58084129 None:intergenic 45.0%
CATGCCACTATCCAAGATCT+TGG + chr3_2:58084108-58084127 Msa0413590:CDS 45.0%
TCTTAACAGCGACTCTATCG+CGG + chr3_2:58084376-58084395 Msa0413590:CDS 45.0%
ACATGCAAGGTGTATAACGC+CGG - chr3_2:58084420-58084439 None:intergenic 45.0%
CGATGATGTTAGGACATGCA+AGG - chr3_2:58084433-58084452 None:intergenic 45.0%
AGGAACGGTTAACGTGTTGA+AGG + chr3_2:58084597-58084616 Msa0413590:CDS 45.0%
AACGGTTAACGTGTTGAAGG+TGG + chr3_2:58084600-58084619 Msa0413590:CDS 45.0%
TAACGTGTTGAAGGTGGCTA+AGG + chr3_2:58084606-58084625 Msa0413590:CDS 45.0%
CTGGCCAGCTGATAAGATTA+AGG + chr3_2:58084690-58084709 Msa0413590:CDS 45.0%
TAAGGCAGAGGATTGTTGGA+CGG + chr3_2:58084708-58084727 Msa0413590:CDS 45.0%
! ACACTACGTGTCCTCTGTTT+TGG + chr3_2:58085845-58085864 Msa0413590:intron 45.0%
GCATATGGTTGGATATAGGG+AGG - chr3_2:58086008-58086027 None:intergenic 45.0%
! TTAGGGGTTTTTGTTCGAGC+CGG - chr3_2:58086686-58086705 None:intergenic 45.0%
CCCTAAAAACCACCCCAAAA+AGG + chr3_2:58086700-58086719 Msa0413590:intron 45.0%
! GTGGTTTTCGGTCCTTTTTG+GGG - chr3_2:58086715-58086734 None:intergenic 45.0%
! GTGTGGTTTTCGGTCCTTTT+TGG - chr3_2:58086717-58086736 None:intergenic 45.0%
CCTTATCTCTTTGTTCGTGC+AGG - chr3_2:58086806-58086825 None:intergenic 45.0%
CCTGCACGAACAAAGAGATA+AGG + chr3_2:58086803-58086822 Msa0413590:intron 45.0%
! CGTTCCTGGTGTAGTTTTCT+GGG - chr3_2:58086851-58086870 None:intergenic 45.0%
CCAGAAAACTACACCAGGAA+CGG + chr3_2:58086849-58086868 Msa0413590:intron 45.0%
!!! CTGTTTCTGCAGTTTTTGGG+GGG - chr3_2:58086876-58086895 None:intergenic 45.0%
!!! GCTGTTTCTGCAGTTTTTGG+GGG - chr3_2:58086877-58086896 None:intergenic 45.0%
!!! GGTGCTGTTTCTGCAGTTTT+TGG - chr3_2:58086880-58086899 None:intergenic 45.0%
GCTGTCCATTGAATCTGCAA+AGG - chr3_2:58086986-58087005 None:intergenic 45.0%
TCCAAGTCCACTCATAGAAG+AGG + chr3_2:58087040-58087059 Msa0413590:intron 45.0%
! TCCTCTTCTATGAGTGGACT+TGG - chr3_2:58087044-58087063 None:intergenic 45.0%
AGTCCACTCATAGAAGAGGA+AGG + chr3_2:58087044-58087063 Msa0413590:intron 45.0%
CTTCCTTCCTCTTCTATGAG+TGG - chr3_2:58087050-58087069 None:intergenic 45.0%
GAAGAACGTGGAGGATATTG+TGG - chr3_2:58087124-58087143 None:intergenic 45.0%
TATCCTCCACGTTCTTCCTT+TGG + chr3_2:58087127-58087146 Msa0413590:intron 45.0%
TAACCAAAGGAAGAACGTGG+AGG - chr3_2:58087133-58087152 None:intergenic 45.0%
ACCCACAAACCACAAGATCA+GGG + chr3_2:58087388-58087407 Msa0413590:intron 45.0%
! ACCCTGATCTTGTGGTTTGT+GGG - chr3_2:58087392-58087411 None:intergenic 45.0%
AACCCTGATCTTGTGGTTTG+TGG - chr3_2:58087393-58087412 None:intergenic 45.0%
! TGAGTTGAACCCTGATCTTG+TGG - chr3_2:58087400-58087419 None:intergenic 45.0%
ATGGTGTACCCTGATGTGAA+AGG + chr3_2:58087673-58087692 Msa0413590:intron 45.0%
CTGCTAGTGTCTTTGCAATG+GGG - chr3_2:58087844-58087863 None:intergenic 45.0%
CACTAGCAGAAAAAGCTGGT+TGG + chr3_2:58087855-58087874 Msa0413590:CDS 45.0%
!! AGCTGGTTGGGAATTTGCTA+AGG + chr3_2:58087868-58087887 Msa0413590:CDS 45.0%
!! TGGGAATTTGCTAAGGAGAC+TGG + chr3_2:58087875-58087894 Msa0413590:CDS 45.0%
! GATGTGGTGATGATTAACCC+TGG + chr3_2:58087902-58087921 Msa0413590:CDS 45.0%
GATTAACCCTGGTACAGCAT+TGG + chr3_2:58087913-58087932 Msa0413590:CDS 45.0%
! GTACTTGCTGGTGTTCTCAA+AGG + chr3_2:58087974-58087993 Msa0413590:CDS 45.0%
AGGCGACAAAGAGACATATG+AGG + chr3_2:58088314-58088333 Msa0413590:intron 45.0%
TGAGGACTTCTTCATGGGAA+TGG + chr3_2:58088332-58088351 Msa0413590:intron 45.0%
!! ATCTGGAAGGCATTTGTGTG+TGG + chr3_2:58088410-58088429 Msa0413590:CDS 45.0%
! AATCCAGGTTGAGTATCCGT+CGG - chr3_2:58088945-58088964 None:intergenic 45.0%
TTGGATGCTGGAGAAACCTA+TGG + chr3_2:58089084-58089103 Msa0413590:three_prime_UTR 45.0%
ACACTGTATTCAGCCACCAT+AGG - chr3_2:58089103-58089122 None:intergenic 45.0%
!!! AAAATATTAATAAATTGTTT+TGG - chr3_2:58084479-58084498 None:intergenic 5.0%
!! AATTTAAATAAAAAAGAATT+AGG - chr3_2:58085528-58085547 None:intergenic 5.0%
!!! TTATTATTAAATTTTTTTTG+AGG + chr3_2:58088101-58088120 Msa0413590:intron 5.0%
!!! TTTTTTTAAATTTTTTTTTG+AGG + chr3_2:58088125-58088144 Msa0413590:intron 5.0%
GGAACCGGCAATTCAAGGAA+CGG + chr3_2:58084582-58084601 Msa0413590:CDS 50.0%
TTGAAGGTGGCTAAGGAAGC+AGG + chr3_2:58084613-58084632 Msa0413590:CDS 50.0%
TGAAGGTGGCTAAGGAAGCA+GGG + chr3_2:58084614-58084633 Msa0413590:CDS 50.0%
! GCTAGGACTCGGTATAATGG+CGG - chr3_2:58084671-58084690 None:intergenic 50.0%
! CCAGCTAGGACTCGGTATAA+TGG - chr3_2:58084674-58084693 None:intergenic 50.0%
CCATTATACCGAGTCCTAGC+TGG + chr3_2:58084671-58084690 Msa0413590:CDS 50.0%
ATCTTATCAGCTGGCCAGCT+AGG - chr3_2:58084688-58084707 None:intergenic 50.0%
! GACGGACCTTGAGTATTGCA+AGG + chr3_2:58084726-58084745 Msa0413590:CDS 50.0%
GTTCACCCTTAGTGGAAAGG+AGG + chr3_2:58085096-58085115 Msa0413590:intron 50.0%
AGAGCTCATCGGGCAACTAA+AGG - chr3_2:58085915-58085934 None:intergenic 50.0%
ATGCAACGCGTAGAGCTCAT+CGG - chr3_2:58085926-58085945 None:intergenic 50.0%
GTCAAAGGGTTGTACTCCCT+TGG - chr3_2:58086386-58086405 None:intergenic 50.0%
CTTGTTAGTGCATCTCGCAC+GGG - chr3_2:58086612-58086631 None:intergenic 50.0%
! GCTTGTTAGTGCATCTCGCA+CGG - chr3_2:58086613-58086632 None:intergenic 50.0%
GCGAGATGCACTAACAAGCT+CGG + chr3_2:58086614-58086633 Msa0413590:intron 50.0%
CGAGATGCACTAACAAGCTC+GGG + chr3_2:58086615-58086634 Msa0413590:intron 50.0%
!! GTTTTCGGTCCTTTTTGGGG+TGG - chr3_2:58086712-58086731 None:intergenic 50.0%
!!! GGCAGCAGCTTTCTGGTTTT+GGG - chr3_2:58086830-58086849 None:intergenic 50.0%
! TTTTCTGGGCAGCAGCTTTC+TGG - chr3_2:58086837-58086856 None:intergenic 50.0%
! CCGTTCCTGGTGTAGTTTTC+TGG - chr3_2:58086852-58086871 None:intergenic 50.0%
!! TCTGCAAAGGGTGTTGGCTT+TGG - chr3_2:58086973-58086992 None:intergenic 50.0%
! CTTGGGTTTGGTCGTTGAGT+AGG - chr3_2:58087083-58087102 None:intergenic 50.0%
CACCCACAAACCACAAGATC+AGG + chr3_2:58087387-58087406 Msa0413590:intron 50.0%
TCAAGCATGGCTGTACTTGC+TGG + chr3_2:58087962-58087981 Msa0413590:CDS 50.0%
ACAACTGCTGCACAATGCAG+TGG - chr3_2:58088831-58088850 None:intergenic 50.0%
ATACCGACGGATACTCAACC+TGG + chr3_2:58088939-58088958 Msa0413590:CDS 50.0%
GATGCTGGAGAAACCTATGG+TGG + chr3_2:58089087-58089106 Msa0413590:three_prime_UTR 50.0%
AACGCCGGCACAACCTTTCA+CGG - chr3_2:58084405-58084424 None:intergenic 55.0%
GAAGGTGGCTAAGGAAGCAG+GGG + chr3_2:58084615-58084634 Msa0413590:CDS 55.0%
TGCAACGCGTAGAGCTCATC+GGG - chr3_2:58085925-58085944 None:intergenic 55.0%
GATGCACTAACAAGCTCGGG+TGG + chr3_2:58086618-58086637 Msa0413590:intron 55.0%
TTTGTTCGTGCAGGCCTAGG+TGG - chr3_2:58086797-58086816 None:intergenic 55.0%
CTCTTTGTTCGTGCAGGCCT+AGG - chr3_2:58086800-58086819 None:intergenic 55.0%
!!! GGGCAGCAGCTTTCTGGTTT+TGG - chr3_2:58086831-58086850 None:intergenic 55.0%
GCTGCCCAGAAAACTACACC+AGG + chr3_2:58086844-58086863 Msa0413590:intron 55.0%
AAGGGCCCAATGCTGTACCA+GGG - chr3_2:58087922-58087941 None:intergenic 55.0%
AAAGGGCCCAATGCTGTACC+AGG - chr3_2:58087923-58087942 None:intergenic 55.0%
! GCACAATGCAGTGGTGTCAG+AGG - chr3_2:58088822-58088841 None:intergenic 55.0%
! GTTTGTGTCACCGGTGCCAG+CGG + chr3_2:58084033-58084052 Msa0413590:CDS 60.0%
CAGCGGAGCCATCGGATCAT+GGG + chr3_2:58084050-58084069 Msa0413590:CDS 60.0%
GCGAACCACCCATGATCCGA+TGG - chr3_2:58084061-58084080 None:intergenic 60.0%
CGGTGAAGTCAAAGACCCCG+AGG + chr3_2:58084451-58084470 Msa0413590:CDS 60.0%
TCAGCTGGCCAGCTAGGACT+CGG - chr3_2:58084682-58084701 None:intergenic 60.0%
ATACCACCGCCTCACCACCT+AGG + chr3_2:58086780-58086799 Msa0413590:intron 60.0%
!! GTTTTTGGGGGGTCCGTTCC+TGG - chr3_2:58086865-58086884 None:intergenic 60.0%
ACCACAACCAGCACATCCGC+AGG + chr3_2:58086897-58086916 Msa0413590:intron 60.0%
CCACAACCAGCACATCCGCA+GGG + chr3_2:58086898-58086917 Msa0413590:intron 60.0%
!! GGAGAAGCTTGCTGTCCCTG+CGG - chr3_2:58086916-58086935 None:intergenic 60.0%
CCATGATCCGATGGCTCCGC+TGG - chr3_2:58084052-58084071 None:intergenic 65.0%
CCAGCGGAGCCATCGGATCA+TGG + chr3_2:58084049-58084068 Msa0413590:CDS 65.0%
CGGAGCCATCGGATCATGGG+TGG + chr3_2:58084053-58084072 Msa0413590:CDS 65.0%
GTTCGCCTCCTCCTCGAACG+CGG + chr3_2:58084075-58084094 Msa0413590:CDS 65.0%
TGTAGCCGCGTTCGAGGAGG+AGG - chr3_2:58084083-58084102 None:intergenic 65.0%
TCTATCGCGGCCGCCGTGAA+AGG + chr3_2:58084389-58084408 Msa0413590:CDS 65.0%
GCCGCCGTGAAAGGTTGTGC+CGG + chr3_2:58084398-58084417 Msa0413590:CDS 65.0%
GCCGGCACAACCTTTCACGG+CGG - chr3_2:58084402-58084421 None:intergenic 65.0%
GGTGGCTAAGGAAGCAGGGG+TGG + chr3_2:58084618-58084637 Msa0413590:CDS 65.0%
GTGCATCTCGCACGGGCTTG+TGG - chr3_2:58086605-58086624 None:intergenic 65.0%
TGCAGGCCTAGGTGGTGAGG+CGG - chr3_2:58086789-58086808 None:intergenic 65.0%
TCGTGCAGGCCTAGGTGGTG+AGG - chr3_2:58086792-58086811 None:intergenic 65.0%
!! CCCTGCGGATGTGCTGGTTG+TGG - chr3_2:58086901-58086920 None:intergenic 65.0%
TGCTGTCCCTGCGGATGTGC+TGG - chr3_2:58086907-58086926 None:intergenic 65.0%
! ACCGGTGCCAGCGGAGCCAT+CGG + chr3_2:58084042-58084061 Msa0413590:CDS 70.0%
TCCGATGGCTCCGCTGGCAC+CGG - chr3_2:58084046-58084065 None:intergenic 70.0%
CGGTGTAGCCGCGTTCGAGG+AGG - chr3_2:58084086-58084105 None:intergenic 70.0%
GGACGGTGTAGCCGCGTTCG+AGG - chr3_2:58084089-58084108 None:intergenic 70.0%
GGAAGCAGGGGTGGAGCGTG+TGG + chr3_2:58084627-58084646 Msa0413590:CDS 70.0%
AGCAGGGGTGGAGCGTGTGG+TGG + chr3_2:58084630-58084649 Msa0413590:CDS 70.0%
AGGCCTAGGTGGTGAGGCGG+TGG - chr3_2:58086786-58086805 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 58083722 58089490 58083722 ID=Msa0413590;Name=Msa0413590
chr3_2 mRNA 58083722 58089490 58083722 ID=Msa0413590-mRNA-1;Parent=Msa0413590;Name=Msa0413590-mRNA-1;_AED=0.04;_eAED=0.04;_QI=299|0.8|0.83|1|1|1|6|411|302
chr3_2 exon 58083722 58084129 58083722 ID=Msa0413590-mRNA-1:exon:11989;Parent=Msa0413590-mRNA-1
chr3_2 exon 58084300 58084472 58084300 ID=Msa0413590-mRNA-1:exon:11990;Parent=Msa0413590-mRNA-1
chr3_2 exon 58084571 58084756 58084571 ID=Msa0413590-mRNA-1:exon:11991;Parent=Msa0413590-mRNA-1
chr3_2 exon 58087833 58087995 58087833 ID=Msa0413590-mRNA-1:exon:11992;Parent=Msa0413590-mRNA-1
chr3_2 exon 58088367 58088502 58088367 ID=Msa0413590-mRNA-1:exon:11993;Parent=Msa0413590-mRNA-1
chr3_2 exon 58088938 58089490 58088938 ID=Msa0413590-mRNA-1:exon:11994;Parent=Msa0413590-mRNA-1
chr3_2 five_prime_UTR 58083722 58084020 58083722 ID=Msa0413590-mRNA-1:five_prime_utr;Parent=Msa0413590-mRNA-1
chr3_2 CDS 58084021 58084129 58084021 ID=Msa0413590-mRNA-1:cds;Parent=Msa0413590-mRNA-1
chr3_2 CDS 58084300 58084472 58084300 ID=Msa0413590-mRNA-1:cds;Parent=Msa0413590-mRNA-1
chr3_2 CDS 58084571 58084756 58084571 ID=Msa0413590-mRNA-1:cds;Parent=Msa0413590-mRNA-1
chr3_2 CDS 58087833 58087995 58087833 ID=Msa0413590-mRNA-1:cds;Parent=Msa0413590-mRNA-1
chr3_2 CDS 58088367 58088502 58088367 ID=Msa0413590-mRNA-1:cds;Parent=Msa0413590-mRNA-1
chr3_2 CDS 58088938 58089079 58088938 ID=Msa0413590-mRNA-1:cds;Parent=Msa0413590-mRNA-1
chr3_2 three_prime_UTR 58089080 58089490 58089080 ID=Msa0413590-mRNA-1:three_prime_utr;Parent=Msa0413590-mRNA-1
Gene Sequence

>Msa0413590

ATGTCAAAGTCAGTTTGTGTCACCGGTGCCAGCGGAGCCATCGGATCATGGGTGGTTCGCCTCCTCCTCGAACGCGGCTACACCGTCCATGCCACTATCCAAGATCTTGAGGATGAAAATGAGACAAAGCATTTAGAAGCAATGGAAGGAGCAAAGACTCGTCTCAAATTTTTTGAAATGGATCTTCTTAACAGCGACTCTATCGCGGCCGCCGTGAAAGGTTGTGCCGGCGTTATACACCTTGCATGTCCTAACATCATCGGTGAAGTCAAAGACCCCGAGAAGCAAATTTTGGAACCGGCAATTCAAGGAACGGTTAACGTGTTGAAGGTGGCTAAGGAAGCAGGGGTGGAGCGTGTGGTGGCGACGTCATCGATCTCCGCCATTATACCGAGTCCTAGCTGGCCAGCTGATAAGATTAAGGCAGAGGATTGTTGGACGGACCTTGAGTATTGCAAGGAAAAGAAGTTATACTACCCCATTGCAAAGACACTAGCAGAAAAAGCTGGTTGGGAATTTGCTAAGGAGACTGGTTTTGATGTGGTGATGATTAACCCTGGTACAGCATTGGGCCCTTTGATTCCACCAAGAATTAACTCAAGCATGGCTGTACTTGCTGGTGTTCTCAAAGACATAGCTTTGGCACATATTTTGGGATTTGAGCAAAAGAAAGCATCTGGAAGGCATTTGTGTGTGGAAGCTATTCGTCACTATAGTGATTTTGTGAATTTGGTTGCCGAGTTATACCCTGAATATAATGTGGCAAAGATACCGACGGATACTCAACCTGGATTGTTGAGAGCAAAGAATGCATCAAAGAAGCTCATTGATTTAGGTTTAGAGTTCACTCCAGCAGAACAAATTATCAAGGATGCAGTTGAGTGTTTGAAGAGTAGAGGTTTAGTTTAA
Protein sequence

>Msa0413590

MSKSVCVTGASGAIGSWVVRLLLERGYTVHATIQDLEDENETKHLEAMEGAKTRLKFFEMDLLNSDSIAAAVKGCAGVIHLACPNIIGEVKDPEKQILEPAIQGTVNVLKVAKEAGVERVVATSSISAIIPSPSWPADKIKAEDCWTDLEYCKEKKLYYPIAKTLAEKAGWEFAKETGFDVVMINPGTALGPLIPPRINSSMAVLAGVLKDIALAHILGFEQKKASGRHLCVEAIRHYSDFVNLVAELYPEYNVAKIPTDTQPGLLRAKNASKKLIDLGLEFTPAEQIIKDAVECLKSRGLV*