AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1352630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1352630 MtrunA17_Chr8g0383271 94.706 170 8 1 3 171 1 170 4.78e-105 298
Msa1352630 MtrunA17_Chr1g0178671 36.134 119 73 2 57 175 8 123 1.19e-21 85.5
Msa1352630 MtrunA17_Chr7g0266291 34.711 121 73 4 58 175 39 156 1.11e-15 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1352630 AT1G10500.1 64.835 182 52 3 7 179 2 180 2.30e-76 226
Msa1352630 AT2G16710.1 37.719 114 63 3 67 175 14 124 1.32e-21 85.9
Msa1352630 AT2G16710.3 35.593 118 66 3 67 175 14 130 3.94e-21 84.7
Msa1352630 AT2G36260.1 33.962 106 66 3 70 175 5 106 1.20e-17 74.7
Msa1352630 AT5G03905.1 34.234 111 70 2 70 179 50 158 3.46e-17 75.1
Msa1352630 AT2G16710.2 35.366 82 50 2 70 151 22 100 7.61e-13 62.4

Find 58 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTGTTGATACATCGATTA+TGG 0.182656 tig0012674:+2426 Msa1352630:three_prime_UTR
AAGAGCCTACTCTTCGTATT+TGG 0.197827 tig0012674:+2048 Msa1352630:CDS
GATCGAATTGAGAGAGGTTT+AGG 0.272109 tig0012674:-520 None:intergenic
CAATACTTCGGAGTAATTAT+AGG 0.301592 tig0012674:+2228 Msa1352630:three_prime_UTR
CCACAGGTTTGTGTCGCATT+AGG 0.312594 tig0012674:-2126 None:intergenic
CAAGATTTGTGTTTAAGAAT+TGG 0.321991 tig0012674:+1198 Msa1352630:CDS
GATTGGAACGCGAACGAATT+GGG 0.333118 tig0012674:-440 None:intergenic
CCACAGCAAACAAACAGATA+TGG 0.339633 tig0012674:-2314 None:intergenic
TATGGCATTACTTGCATTAG+TGG 0.358906 tig0012674:+2444 Msa1352630:three_prime_UTR
AATACGAAGAGTAGGCTCTT+AGG 0.361492 tig0012674:-2045 None:intergenic
GAACAATATAATATAAATAC+TGG 0.367518 tig0012674:+2371 Msa1352630:three_prime_UTR
TGATTGGAACGCGAACGAAT+TGG 0.382823 tig0012674:-441 None:intergenic
GGTGCCACGGCCCCAGATGC+AGG 0.406436 tig0012674:-1114 None:intergenic
ATCGAATTGAGAGAGGTTTA+GGG 0.409502 tig0012674:-519 None:intergenic
GAGAGAGAGCTATGAGTGAT+TGG 0.409580 tig0012674:-457 None:intergenic
TGCACCTGCATCTGGGGCCG+TGG 0.436538 tig0012674:+1110 Msa1352630:CDS
AAAACCTTTGTATTCAATGA+TGG 0.441255 tig0012674:-1298 None:intergenic
CTAAAGCGGCGATTGAGAAT+TGG 0.446890 tig0012674:-496 None:intergenic
GACTACAGTGATGCTCTGAT+TGG 0.458599 tig0012674:+2081 Msa1352630:CDS
GTCAAACAAGGTGGGTGCTC+TGG 0.472114 tig0012674:+1222 Msa1352630:CDS
CACAGCAAACAAACAGATAT+GGG 0.474400 tig0012674:-2313 None:intergenic
CCATATCTGTTTGTTTGCTG+TGG 0.480157 tig0012674:+2314 Msa1352630:three_prime_UTR
AGACAATAGTTACAATAGTA+AGG 0.485053 tig0012674:+2192 Msa1352630:three_prime_UTR
CGATGTATCAACAGAGAAAG+TGG 0.485454 tig0012674:-2419 None:intergenic
TTATCTGTAAGCGAAATTGC+AGG 0.509358 tig0012674:-1135 None:intergenic
GGGCTTACCGGCAGCAATAA+CGG 0.512066 tig0012674:-548 None:intergenic
AAATTCTCTCGTATTACAGC+AGG 0.513223 tig0012674:-2495 None:intergenic
ATTGGAACGCGAACGAATTG+GGG 0.513543 tig0012674:-439 None:intergenic
AAATGATTTACCACATCCAC+AGG 0.517325 tig0012674:-2142 None:intergenic
AAATCAAACATGGCCATGGC+TGG 0.519320 tig0012674:+376 Msa1352630:exon
TATTCAATGATGGAGTCGTC+TGG 0.526703 tig0012674:-1288 None:intergenic
TACAGTGATGCTCTGATTGG+AGG 0.527694 tig0012674:+2084 Msa1352630:CDS
ACAATAAACTGATGCACCAC+AGG 0.539750 tig0012674:-2337 None:intergenic
TCACTTTCCGTTATTGCTGC+CGG 0.540114 tig0012674:+541 Msa1352630:CDS
TGTTTGTTTGCTGTGGCCTG+TGG 0.558121 tig0012674:+2321 Msa1352630:three_prime_UTR
TTTAGCTGCACCTGCATCTG+GGG 0.577576 tig0012674:+1104 Msa1352630:intron
GCGACACAAACCTGTGGATG+TGG 0.581388 tig0012674:+2132 Msa1352630:CDS
TTAAGAATTGGTGTCAAACA+AGG 0.584994 tig0012674:+1210 Msa1352630:CDS
AAGCGAAATTGCAGGTGCCA+CGG 0.587731 tig0012674:-1127 None:intergenic
AGAATTGGTGTCAAACAAGG+TGG 0.587930 tig0012674:+1213 Msa1352630:CDS
AGTGATGCTCTGATTGGAGG+AGG 0.589985 tig0012674:+2087 Msa1352630:CDS
TTGAGGACAGGGCTAATGCA+AGG 0.598318 tig0012674:+1265 Msa1352630:CDS
CAATTACTACTACCGCGCAC+TGG 0.599076 tig0012674:+413 Msa1352630:CDS
AGAGAGGTTTAGGGCTAAAG+CGG 0.601518 tig0012674:-510 None:intergenic
GCATTCCAAATACGAAGAGT+AGG 0.603532 tig0012674:-2053 None:intergenic
ACACAAATCAAACATGGCCA+TGG 0.605803 tig0012674:+372 Msa1352630:exon
AGAGAAAGCAGCACCAGCCA+TGG 0.608264 tig0012674:-389 None:intergenic
CTCTGGTATGTCATACACAA+TGG 0.609613 tig0012674:+1239 Msa1352630:CDS
TTCTCTACACAAATCAAACA+TGG 0.615705 tig0012674:+366 Msa1352630:exon
GAATGTTTGAAGCAATACTT+CGG 0.618101 tig0012674:+2216 Msa1352630:three_prime_UTR
GAAAGTGATCGAATTGAGAG+AGG 0.627615 tig0012674:-526 None:intergenic
TCAATCACTTGAATAAGATG+AGG 0.638619 tig0012674:+1163 Msa1352630:CDS
GAATTGGTGTCAAACAAGGT+GGG 0.648767 tig0012674:+1214 Msa1352630:CDS
GACTCCATCATTGAATACAA+AGG 0.682577 tig0012674:+1294 Msa1352630:CDS
CCTAATGCGACACAAACCTG+TGG 0.690717 tig0012674:+2126 Msa1352630:CDS
TCTCTCGTATTACAGCAGGT+AGG 0.733744 tig0012674:-2491 None:intergenic
AATACGAGAGAATTTAACTG+AGG 0.735243 tig0012674:+2503 Msa1352630:three_prime_UTR
GAATTGGGGAGACCAGTGCG+CGG 0.788727 tig0012674:-425 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATAAATAGAAGAATAT+GGG - tig0012674:572-591 None:intergenic 10.0%
!! ATTAATAAATAGAAGAATAT+GGG - tig0012674:572-591 None:intergenic 10.0%
!! TTAATAAATAGAAGAATATG+GGG - tig0012674:571-590 None:intergenic 15.0%
!! GATTAATAAATAGAAGAATA+TGG - tig0012674:573-592 None:intergenic 15.0%
!! ATGTATGAGTTTAAAAAAAA+TGG + tig0012674:959-978 Msa1352630:intron 15.0%
!! TGTATGAGTTTAAAAAAAAT+GGG + tig0012674:960-979 Msa1352630:intron 15.0%
!!! ATATTTTGCTTGTTTTTATT+TGG + tig0012674:1534-1553 Msa1352630:intron 15.0%
!!! TATTTTGCTTGTTTTTATTT+GGG + tig0012674:1535-1554 Msa1352630:intron 15.0%
!!! TTTTATTACAATCACATTAT+AGG + tig0012674:2252-2271 Msa1352630:three_prime_UTR 15.0%
!! GAACAATATAATATAAATAC+TGG + tig0012674:2371-2390 Msa1352630:three_prime_UTR 15.0%
!! TTAATAAATAGAAGAATATG+GGG - tig0012674:571-590 None:intergenic 15.0%
!! GATTAATAAATAGAAGAATA+TGG - tig0012674:573-592 None:intergenic 15.0%
!! ATGTATGAGTTTAAAAAAAA+TGG + tig0012674:959-978 Msa1352630:intron 15.0%
!! TGTATGAGTTTAAAAAAAAT+GGG + tig0012674:960-979 Msa1352630:intron 15.0%
!!! ATATTTTGCTTGTTTTTATT+TGG + tig0012674:1534-1553 Msa1352630:intron 15.0%
!!! TATTTTGCTTGTTTTTATTT+GGG + tig0012674:1535-1554 Msa1352630:intron 15.0%
!!! TTTTATTACAATCACATTAT+AGG + tig0012674:2252-2271 Msa1352630:three_prime_UTR 15.0%
!! GAACAATATAATATAAATAC+TGG + tig0012674:2371-2390 Msa1352630:three_prime_UTR 15.0%
!! CAAAATACTCCTATTAATTA+GGG - tig0012674:750-769 None:intergenic 20.0%
!! TCAAAATACTCCTATTAATT+AGG - tig0012674:751-770 None:intergenic 20.0%
!! AGGAAATAACAAAACATAAA+TGG - tig0012674:786-805 None:intergenic 20.0%
!! ATCAAATAATTTAATCACCT+TGG - tig0012674:1384-1403 None:intergenic 20.0%
!! CAATATCTTCAAATGAATAT+GGG + tig0012674:1420-1439 Msa1352630:intron 20.0%
!!! AGTTTGATAACATTTATACT+TGG - tig0012674:1575-1594 None:intergenic 20.0%
!! CAAAATACTCCTATTAATTA+GGG - tig0012674:750-769 None:intergenic 20.0%
!! TCAAAATACTCCTATTAATT+AGG - tig0012674:751-770 None:intergenic 20.0%
!! AGGAAATAACAAAACATAAA+TGG - tig0012674:786-805 None:intergenic 20.0%
!! ATCAAATAATTTAATCACCT+TGG - tig0012674:1384-1403 None:intergenic 20.0%
!! CAATATCTTCAAATGAATAT+GGG + tig0012674:1420-1439 Msa1352630:intron 20.0%
!!! AGTTTGATAACATTTATACT+TGG - tig0012674:1575-1594 None:intergenic 20.0%
! ATTACGACAATTTCATGAAT+TGG - tig0012674:632-651 None:intergenic 25.0%
!!! AGGAGTATTTTGAAAGATTA+AGG + tig0012674:758-777 Msa1352630:intron 25.0%
!! TTTTAAACTCATACATAGCA+TGG - tig0012674:955-974 None:intergenic 25.0%
! GCAAATGTTGAATAAATACA+TGG - tig0012674:1071-1090 None:intergenic 25.0%
! CAAGATTTGTGTTTAAGAAT+TGG + tig0012674:1198-1217 Msa1352630:CDS 25.0%
! AAAACCTTTGTATTCAATGA+TGG - tig0012674:1301-1320 None:intergenic 25.0%
! CCATATTCATTTGAAGATAT+TGG - tig0012674:1422-1441 None:intergenic 25.0%
! CCAATATCTTCAAATGAATA+TGG + tig0012674:1419-1438 Msa1352630:intron 25.0%
!! ATTAAGATTTTCATCGATAC+TGG - tig0012674:1448-1467 None:intergenic 25.0%
! CAATGATAATAAAAACTGAG+TGG + tig0012674:1602-1621 Msa1352630:intron 25.0%
!!! CTTTTTAAGCTTTTGTTTAC+TGG + tig0012674:1861-1880 Msa1352630:intron 25.0%
!!! GCAGTTCAAACTTTTTTTTA+TGG + tig0012674:1910-1929 Msa1352630:intron 25.0%
!! CTTTTAGTAGTAATTAAGCT+TGG + tig0012674:1947-1966 Msa1352630:intron 25.0%
! AGACAATAGTTACAATAGTA+AGG + tig0012674:2192-2211 Msa1352630:three_prime_UTR 25.0%
! ATTACGACAATTTCATGAAT+TGG - tig0012674:632-651 None:intergenic 25.0%
!!! AGGAGTATTTTGAAAGATTA+AGG + tig0012674:758-777 Msa1352630:intron 25.0%
!! TTTTAAACTCATACATAGCA+TGG - tig0012674:955-974 None:intergenic 25.0%
! GCAAATGTTGAATAAATACA+TGG - tig0012674:1071-1090 None:intergenic 25.0%
! CAAGATTTGTGTTTAAGAAT+TGG + tig0012674:1198-1217 Msa1352630:CDS 25.0%
! AAAACCTTTGTATTCAATGA+TGG - tig0012674:1301-1320 None:intergenic 25.0%
! CCATATTCATTTGAAGATAT+TGG - tig0012674:1422-1441 None:intergenic 25.0%
! CCAATATCTTCAAATGAATA+TGG + tig0012674:1419-1438 Msa1352630:intron 25.0%
!! ATTAAGATTTTCATCGATAC+TGG - tig0012674:1448-1467 None:intergenic 25.0%
! CAATGATAATAAAAACTGAG+TGG + tig0012674:1602-1621 Msa1352630:intron 25.0%
!!! CTTTTTAAGCTTTTGTTTAC+TGG + tig0012674:1861-1880 Msa1352630:intron 25.0%
!!! GCAGTTCAAACTTTTTTTTA+TGG + tig0012674:1910-1929 Msa1352630:intron 25.0%
!! CTTTTAGTAGTAATTAAGCT+TGG + tig0012674:1947-1966 Msa1352630:intron 25.0%
! AGACAATAGTTACAATAGTA+AGG + tig0012674:2192-2211 Msa1352630:three_prime_UTR 25.0%
GGGACAAAACAAAAACATAT+TGG + tig0012674:314-333 Msa1352630:five_prime_UTR 30.0%
TTCTCTACACAAATCAAACA+TGG + tig0012674:366-385 Msa1352630:exon 30.0%
ATACTCCTATTAATTAGGGT+AGG - tig0012674:746-765 None:intergenic 30.0%
!! TTGTTATTTCCTATGAACCA+CGG + tig0012674:794-813 Msa1352630:intron 30.0%
TCAATCACTTGAATAAGATG+AGG + tig0012674:1163-1182 Msa1352630:CDS 30.0%
!! TTAAGAATTGGTGTCAAACA+AGG + tig0012674:1210-1229 Msa1352630:CDS 30.0%
!! GAATACAAAGGTTTTGTCAT+TGG + tig0012674:1306-1325 Msa1352630:CDS 30.0%
ACAGATATGATAGTTAACAG+AGG - tig0012674:1690-1709 None:intergenic 30.0%
!!! TTTTTTTTATGGCTGCACTT+GGG + tig0012674:1921-1940 Msa1352630:intron 30.0%
! GAATGTTTGAAGCAATACTT+CGG + tig0012674:2216-2235 Msa1352630:three_prime_UTR 30.0%
CAATACTTCGGAGTAATTAT+AGG + tig0012674:2228-2247 Msa1352630:three_prime_UTR 30.0%
AATACGAGAGAATTTAACTG+AGG + tig0012674:2503-2522 Msa1352630:three_prime_UTR 30.0%
GGGACAAAACAAAAACATAT+TGG + tig0012674:314-333 Msa1352630:five_prime_UTR 30.0%
TTCTCTACACAAATCAAACA+TGG + tig0012674:366-385 Msa1352630:exon 30.0%
ATACTCCTATTAATTAGGGT+AGG - tig0012674:746-765 None:intergenic 30.0%
!! TTGTTATTTCCTATGAACCA+CGG + tig0012674:794-813 Msa1352630:intron 30.0%
TCAATCACTTGAATAAGATG+AGG + tig0012674:1163-1182 Msa1352630:CDS 30.0%
!! TTAAGAATTGGTGTCAAACA+AGG + tig0012674:1210-1229 Msa1352630:CDS 30.0%
!! GAATACAAAGGTTTTGTCAT+TGG + tig0012674:1306-1325 Msa1352630:CDS 30.0%
ACAGATATGATAGTTAACAG+AGG - tig0012674:1690-1709 None:intergenic 30.0%
!!! TTTTTTTTATGGCTGCACTT+GGG + tig0012674:1921-1940 Msa1352630:intron 30.0%
! GAATGTTTGAAGCAATACTT+CGG + tig0012674:2216-2235 Msa1352630:three_prime_UTR 30.0%
CAATACTTCGGAGTAATTAT+AGG + tig0012674:2228-2247 Msa1352630:three_prime_UTR 30.0%
AATACGAGAGAATTTAACTG+AGG + tig0012674:2503-2522 Msa1352630:three_prime_UTR 30.0%
ATCGAATTGAGAGAGGTTTA+GGG - tig0012674:522-541 None:intergenic 35.0%
GGGGTTATGCAGAAAAATTA+AGG - tig0012674:717-736 None:intergenic 35.0%
ATTAATTAGGGTAGGCAAAG+CGG - tig0012674:738-757 None:intergenic 35.0%
CTTTGCCTACCCTAATTAAT+AGG + tig0012674:738-757 Msa1352630:intron 35.0%
! TCTTTACACTCAGATTAGTC+AGG + tig0012674:908-927 Msa1352630:intron 35.0%
! CTTTACACTCAGATTAGTCA+GGG + tig0012674:909-928 Msa1352630:intron 35.0%
TTATCTGTAAGCGAAATTGC+AGG - tig0012674:1138-1157 None:intergenic 35.0%
!! GTCATACACAATGGATTTTG+AGG + tig0012674:1248-1267 Msa1352630:CDS 35.0%
GACTCCATCATTGAATACAA+AGG + tig0012674:1294-1313 Msa1352630:CDS 35.0%
! TTTTCCTGCTCTTTCTCTTT+TGG + tig0012674:1357-1376 Msa1352630:intron 35.0%
! TTGTTGTTGTTGTTGTACAG+TGG + tig0012674:1486-1505 Msa1352630:intron 35.0%
! TGTTGTTGTTGTTGTACAGT+GGG + tig0012674:1487-1506 Msa1352630:intron 35.0%
TCAAGACTTGATTGAAAGCT+TGG + tig0012674:1812-1831 Msa1352630:intron 35.0%
AAGAACTGAAGAAGATAACG+TGG - tig0012674:1844-1863 None:intergenic 35.0%
!!! TTACTGGTTTTTGCAGCAAT+TGG + tig0012674:1877-1896 Msa1352630:intron 35.0%
!!! CTTTTTTTTATGGCTGCACT+TGG + tig0012674:1920-1939 Msa1352630:intron 35.0%
AAATGATTTACCACATCCAC+AGG - tig0012674:2145-2164 None:intergenic 35.0%
CACAGCAAACAAACAGATAT+GGG - tig0012674:2316-2335 None:intergenic 35.0%
! CTCTGTTGATACATCGATTA+TGG + tig0012674:2426-2445 Msa1352630:three_prime_UTR 35.0%
TATGGCATTACTTGCATTAG+TGG + tig0012674:2444-2463 Msa1352630:three_prime_UTR 35.0%
AAATTCTCTCGTATTACAGC+AGG - tig0012674:2498-2517 None:intergenic 35.0%
ATCGAATTGAGAGAGGTTTA+GGG - tig0012674:522-541 None:intergenic 35.0%
GGGGTTATGCAGAAAAATTA+AGG - tig0012674:717-736 None:intergenic 35.0%
ATTAATTAGGGTAGGCAAAG+CGG - tig0012674:738-757 None:intergenic 35.0%
CTTTGCCTACCCTAATTAAT+AGG + tig0012674:738-757 Msa1352630:intron 35.0%
! TCTTTACACTCAGATTAGTC+AGG + tig0012674:908-927 Msa1352630:intron 35.0%
! CTTTACACTCAGATTAGTCA+GGG + tig0012674:909-928 Msa1352630:intron 35.0%
TTATCTGTAAGCGAAATTGC+AGG - tig0012674:1138-1157 None:intergenic 35.0%
!! GTCATACACAATGGATTTTG+AGG + tig0012674:1248-1267 Msa1352630:CDS 35.0%
GACTCCATCATTGAATACAA+AGG + tig0012674:1294-1313 Msa1352630:CDS 35.0%
! TTTTCCTGCTCTTTCTCTTT+TGG + tig0012674:1357-1376 Msa1352630:intron 35.0%
! TTGTTGTTGTTGTTGTACAG+TGG + tig0012674:1486-1505 Msa1352630:intron 35.0%
! TGTTGTTGTTGTTGTACAGT+GGG + tig0012674:1487-1506 Msa1352630:intron 35.0%
TCAAGACTTGATTGAAAGCT+TGG + tig0012674:1812-1831 Msa1352630:intron 35.0%
AAGAACTGAAGAAGATAACG+TGG - tig0012674:1844-1863 None:intergenic 35.0%
!!! TTACTGGTTTTTGCAGCAAT+TGG + tig0012674:1877-1896 Msa1352630:intron 35.0%
!!! CTTTTTTTTATGGCTGCACT+TGG + tig0012674:1920-1939 Msa1352630:intron 35.0%
AAATGATTTACCACATCCAC+AGG - tig0012674:2145-2164 None:intergenic 35.0%
CACAGCAAACAAACAGATAT+GGG - tig0012674:2316-2335 None:intergenic 35.0%
! CTCTGTTGATACATCGATTA+TGG + tig0012674:2426-2445 Msa1352630:three_prime_UTR 35.0%
TATGGCATTACTTGCATTAG+TGG + tig0012674:2444-2463 Msa1352630:three_prime_UTR 35.0%
AAATTCTCTCGTATTACAGC+AGG - tig0012674:2498-2517 None:intergenic 35.0%
ACACAAATCAAACATGGCCA+TGG + tig0012674:372-391 Msa1352630:exon 40.0%
GATCGAATTGAGAGAGGTTT+AGG - tig0012674:523-542 None:intergenic 40.0%
GAAAGTGATCGAATTGAGAG+AGG - tig0012674:529-548 None:intergenic 40.0%
TAGAAGAATATGGGGCTTAC+CGG - tig0012674:563-582 None:intergenic 40.0%
TTAATTAGGGTAGGCAAAGC+GGG - tig0012674:737-756 None:intergenic 40.0%
GAGATAAGAAATCACCCATG+TGG - tig0012674:827-846 None:intergenic 40.0%
!! AGAATTGGTGTCAAACAAGG+TGG + tig0012674:1213-1232 Msa1352630:CDS 40.0%
!! GAATTGGTGTCAAACAAGGT+GGG + tig0012674:1214-1233 Msa1352630:CDS 40.0%
CTCTGGTATGTCATACACAA+TGG + tig0012674:1239-1258 Msa1352630:CDS 40.0%
!! ACACAATGGATTTTGAGGAC+AGG + tig0012674:1253-1272 Msa1352630:CDS 40.0%
!! CACAATGGATTTTGAGGACA+GGG + tig0012674:1254-1273 Msa1352630:CDS 40.0%
! TATTCAATGATGGAGTCGTC+TGG - tig0012674:1291-1310 None:intergenic 40.0%
!!! GTGGGTGTTTTATTTCAACG+CGG + tig0012674:1505-1524 Msa1352630:intron 40.0%
!!! TGGGTGTTTTATTTCAACGC+GGG + tig0012674:1506-1525 Msa1352630:intron 40.0%
ATTCCTGCTTAACAAAGTGC+TGG - tig0012674:1779-1798 None:intergenic 40.0%
AACTGAAGAAGATAACGTGG+AGG - tig0012674:1841-1860 None:intergenic 40.0%
TAAGCTTGGCAAACGAAAGA+AGG + tig0012674:1961-1980 Msa1352630:intron 40.0%
AATACGAAGAGTAGGCTCTT+AGG - tig0012674:2048-2067 None:intergenic 40.0%
AAGAGCCTACTCTTCGTATT+TGG + tig0012674:2048-2067 Msa1352630:CDS 40.0%
GCATTCCAAATACGAAGAGT+AGG - tig0012674:2056-2075 None:intergenic 40.0%
CCACAGCAAACAAACAGATA+TGG - tig0012674:2317-2336 None:intergenic 40.0%
! CCATATCTGTTTGTTTGCTG+TGG + tig0012674:2314-2333 Msa1352630:three_prime_UTR 40.0%
ACAATAAACTGATGCACCAC+AGG - tig0012674:2340-2359 None:intergenic 40.0%
CGATGTATCAACAGAGAAAG+TGG - tig0012674:2422-2441 None:intergenic 40.0%
ACACAAATCAAACATGGCCA+TGG + tig0012674:372-391 Msa1352630:exon 40.0%
GATCGAATTGAGAGAGGTTT+AGG - tig0012674:523-542 None:intergenic 40.0%
GAAAGTGATCGAATTGAGAG+AGG - tig0012674:529-548 None:intergenic 40.0%
TAGAAGAATATGGGGCTTAC+CGG - tig0012674:563-582 None:intergenic 40.0%
TTAATTAGGGTAGGCAAAGC+GGG - tig0012674:737-756 None:intergenic 40.0%
GAGATAAGAAATCACCCATG+TGG - tig0012674:827-846 None:intergenic 40.0%
!! AGAATTGGTGTCAAACAAGG+TGG + tig0012674:1213-1232 Msa1352630:CDS 40.0%
!! GAATTGGTGTCAAACAAGGT+GGG + tig0012674:1214-1233 Msa1352630:CDS 40.0%
CTCTGGTATGTCATACACAA+TGG + tig0012674:1239-1258 Msa1352630:CDS 40.0%
!! ACACAATGGATTTTGAGGAC+AGG + tig0012674:1253-1272 Msa1352630:CDS 40.0%
!! CACAATGGATTTTGAGGACA+GGG + tig0012674:1254-1273 Msa1352630:CDS 40.0%
! TATTCAATGATGGAGTCGTC+TGG - tig0012674:1291-1310 None:intergenic 40.0%
!!! GTGGGTGTTTTATTTCAACG+CGG + tig0012674:1505-1524 Msa1352630:intron 40.0%
!!! TGGGTGTTTTATTTCAACGC+GGG + tig0012674:1506-1525 Msa1352630:intron 40.0%
ATTCCTGCTTAACAAAGTGC+TGG - tig0012674:1779-1798 None:intergenic 40.0%
AACTGAAGAAGATAACGTGG+AGG - tig0012674:1841-1860 None:intergenic 40.0%
TAAGCTTGGCAAACGAAAGA+AGG + tig0012674:1961-1980 Msa1352630:intron 40.0%
AATACGAAGAGTAGGCTCTT+AGG - tig0012674:2048-2067 None:intergenic 40.0%
AAGAGCCTACTCTTCGTATT+TGG + tig0012674:2048-2067 Msa1352630:CDS 40.0%
GCATTCCAAATACGAAGAGT+AGG - tig0012674:2056-2075 None:intergenic 40.0%
CCACAGCAAACAAACAGATA+TGG - tig0012674:2317-2336 None:intergenic 40.0%
! CCATATCTGTTTGTTTGCTG+TGG + tig0012674:2314-2333 Msa1352630:three_prime_UTR 40.0%
ACAATAAACTGATGCACCAC+AGG - tig0012674:2340-2359 None:intergenic 40.0%
CGATGTATCAACAGAGAAAG+TGG - tig0012674:2422-2441 None:intergenic 40.0%
AAATCAAACATGGCCATGGC+TGG + tig0012674:376-395 Msa1352630:exon 45.0%
ATTGGAACGCGAACGAATTG+GGG - tig0012674:442-461 None:intergenic 45.0%
GATTGGAACGCGAACGAATT+GGG - tig0012674:443-462 None:intergenic 45.0%
TGATTGGAACGCGAACGAAT+TGG - tig0012674:444-463 None:intergenic 45.0%
GAGAGAGAGCTATGAGTGAT+TGG - tig0012674:460-479 None:intergenic 45.0%
CTAAAGCGGCGATTGAGAAT+TGG - tig0012674:499-518 None:intergenic 45.0%
! AGAGAGGTTTAGGGCTAAAG+CGG - tig0012674:513-532 None:intergenic 45.0%
TCACTTTCCGTTATTGCTGC+CGG + tig0012674:541-560 Msa1352630:CDS 45.0%
! AAACCTAGCAGCAAGTACTG+GGG - tig0012674:667-686 None:intergenic 45.0%
CAAACCTAGCAGCAAGTACT+GGG - tig0012674:668-687 None:intergenic 45.0%
TAATTAGGGTAGGCAAAGCG+GGG - tig0012674:736-755 None:intergenic 45.0%
! TCAGGGTTCGTTGTGACTTT+TGG + tig0012674:926-945 Msa1352630:intron 45.0%
ATACATGGTCGAGACAGACA+GGG - tig0012674:1056-1075 None:intergenic 45.0%
AATACATGGTCGAGACAGAC+AGG - tig0012674:1057-1076 None:intergenic 45.0%
!!! ATTTTAGCTGCACCTGCATC+TGG + tig0012674:1102-1121 Msa1352630:intron 45.0%
!! TTTTAGCTGCACCTGCATCT+GGG + tig0012674:1103-1122 Msa1352630:intron 45.0%
TGGACCAAAAGAGAAAGAGC+AGG - tig0012674:1364-1383 None:intergenic 45.0%
! GCTCTTTCTCTTTTGGTCCA+AGG + tig0012674:1364-1383 Msa1352630:intron 45.0%
!! CTGGTTTTTGCAGCAATTGG+TGG + tig0012674:1880-1899 Msa1352630:intron 45.0%
GACTACAGTGATGCTCTGAT+TGG + tig0012674:2081-2100 Msa1352630:CDS 45.0%
TACAGTGATGCTCTGATTGG+AGG + tig0012674:2084-2103 Msa1352630:CDS 45.0%
TCTCTCGTATTACAGCAGGT+AGG - tig0012674:2494-2513 None:intergenic 45.0%
AAATCAAACATGGCCATGGC+TGG + tig0012674:376-395 Msa1352630:exon 45.0%
ATTGGAACGCGAACGAATTG+GGG - tig0012674:442-461 None:intergenic 45.0%
GATTGGAACGCGAACGAATT+GGG - tig0012674:443-462 None:intergenic 45.0%
TGATTGGAACGCGAACGAAT+TGG - tig0012674:444-463 None:intergenic 45.0%
GAGAGAGAGCTATGAGTGAT+TGG - tig0012674:460-479 None:intergenic 45.0%
CTAAAGCGGCGATTGAGAAT+TGG - tig0012674:499-518 None:intergenic 45.0%
! AGAGAGGTTTAGGGCTAAAG+CGG - tig0012674:513-532 None:intergenic 45.0%
TCACTTTCCGTTATTGCTGC+CGG + tig0012674:541-560 Msa1352630:CDS 45.0%
! AAACCTAGCAGCAAGTACTG+GGG - tig0012674:667-686 None:intergenic 45.0%
CAAACCTAGCAGCAAGTACT+GGG - tig0012674:668-687 None:intergenic 45.0%
TAATTAGGGTAGGCAAAGCG+GGG - tig0012674:736-755 None:intergenic 45.0%
! TCAGGGTTCGTTGTGACTTT+TGG + tig0012674:926-945 Msa1352630:intron 45.0%
ATACATGGTCGAGACAGACA+GGG - tig0012674:1056-1075 None:intergenic 45.0%
AATACATGGTCGAGACAGAC+AGG - tig0012674:1057-1076 None:intergenic 45.0%
!!! ATTTTAGCTGCACCTGCATC+TGG + tig0012674:1102-1121 Msa1352630:intron 45.0%
!! TTTTAGCTGCACCTGCATCT+GGG + tig0012674:1103-1122 Msa1352630:intron 45.0%
TGGACCAAAAGAGAAAGAGC+AGG - tig0012674:1364-1383 None:intergenic 45.0%
! GCTCTTTCTCTTTTGGTCCA+AGG + tig0012674:1364-1383 Msa1352630:intron 45.0%
!! CTGGTTTTTGCAGCAATTGG+TGG + tig0012674:1880-1899 Msa1352630:intron 45.0%
GACTACAGTGATGCTCTGAT+TGG + tig0012674:2081-2100 Msa1352630:CDS 45.0%
TACAGTGATGCTCTGATTGG+AGG + tig0012674:2084-2103 Msa1352630:CDS 45.0%
TCTCTCGTATTACAGCAGGT+AGG - tig0012674:2494-2513 None:intergenic 45.0%
CAATTACTACTACCGCGCAC+TGG + tig0012674:413-432 Msa1352630:CDS 50.0%
CCAAACCTAGCAGCAAGTAC+TGG - tig0012674:669-688 None:intergenic 50.0%
! CCAGTACTTGCTGCTAGGTT+TGG + tig0012674:666-685 Msa1352630:intron 50.0%
! GGGAGTGCAACAAAGCACTT+CGG + tig0012674:980-999 Msa1352630:intron 50.0%
TACATGGTCGAGACAGACAG+GGG - tig0012674:1055-1074 None:intergenic 50.0%
TTTAGCTGCACCTGCATCTG+GGG + tig0012674:1104-1123 Msa1352630:intron 50.0%
AAGCGAAATTGCAGGTGCCA+CGG - tig0012674:1130-1149 None:intergenic 50.0%
TTGAGGACAGGGCTAATGCA+AGG + tig0012674:1265-1284 Msa1352630:CDS 50.0%
CTGCCAGCACTTTGTTAAGC+AGG + tig0012674:1773-1792 Msa1352630:intron 50.0%
AGTGATGCTCTGATTGGAGG+AGG + tig0012674:2087-2106 Msa1352630:CDS 50.0%
CCACAGGTTTGTGTCGCATT+AGG - tig0012674:2129-2148 None:intergenic 50.0%
CCTAATGCGACACAAACCTG+TGG + tig0012674:2126-2145 Msa1352630:CDS 50.0%
!! TGTTTGTTTGCTGTGGCCTG+TGG + tig0012674:2321-2340 Msa1352630:three_prime_UTR 50.0%
CAATTACTACTACCGCGCAC+TGG + tig0012674:413-432 Msa1352630:CDS 50.0%
CCAAACCTAGCAGCAAGTAC+TGG - tig0012674:669-688 None:intergenic 50.0%
! CCAGTACTTGCTGCTAGGTT+TGG + tig0012674:666-685 Msa1352630:intron 50.0%
! GGGAGTGCAACAAAGCACTT+CGG + tig0012674:980-999 Msa1352630:intron 50.0%
TACATGGTCGAGACAGACAG+GGG - tig0012674:1055-1074 None:intergenic 50.0%
TTTAGCTGCACCTGCATCTG+GGG + tig0012674:1104-1123 Msa1352630:intron 50.0%
AAGCGAAATTGCAGGTGCCA+CGG - tig0012674:1130-1149 None:intergenic 50.0%
TTGAGGACAGGGCTAATGCA+AGG + tig0012674:1265-1284 Msa1352630:CDS 50.0%
CTGCCAGCACTTTGTTAAGC+AGG + tig0012674:1773-1792 Msa1352630:intron 50.0%
AGTGATGCTCTGATTGGAGG+AGG + tig0012674:2087-2106 Msa1352630:CDS 50.0%
CCACAGGTTTGTGTCGCATT+AGG - tig0012674:2129-2148 None:intergenic 50.0%
CCTAATGCGACACAAACCTG+TGG + tig0012674:2126-2145 Msa1352630:CDS 50.0%
!! TGTTTGTTTGCTGTGGCCTG+TGG + tig0012674:2321-2340 Msa1352630:three_prime_UTR 50.0%
AGAGAAAGCAGCACCAGCCA+TGG - tig0012674:392-411 None:intergenic 55.0%
GGGCTTACCGGCAGCAATAA+CGG - tig0012674:551-570 None:intergenic 55.0%
! AGACCCCAGTACTTGCTGCT+AGG + tig0012674:661-680 Msa1352630:intron 55.0%
GGCATGTGTCCGTGGTTCAT+AGG - tig0012674:806-825 None:intergenic 55.0%
AACCACGGACACATGCCACA+TGG + tig0012674:809-828 Msa1352630:intron 55.0%
ACCACGGACACATGCCACAT+GGG + tig0012674:810-829 Msa1352630:intron 55.0%
GTCAAACAAGGTGGGTGCTC+TGG + tig0012674:1222-1241 Msa1352630:CDS 55.0%
GCGACACAAACCTGTGGATG+TGG + tig0012674:2132-2151 Msa1352630:CDS 55.0%
AGAGAAAGCAGCACCAGCCA+TGG - tig0012674:392-411 None:intergenic 55.0%
GGGCTTACCGGCAGCAATAA+CGG - tig0012674:551-570 None:intergenic 55.0%
! AGACCCCAGTACTTGCTGCT+AGG + tig0012674:661-680 Msa1352630:intron 55.0%
GGCATGTGTCCGTGGTTCAT+AGG - tig0012674:806-825 None:intergenic 55.0%
AACCACGGACACATGCCACA+TGG + tig0012674:809-828 Msa1352630:intron 55.0%
ACCACGGACACATGCCACAT+GGG + tig0012674:810-829 Msa1352630:intron 55.0%
GTCAAACAAGGTGGGTGCTC+TGG + tig0012674:1222-1241 Msa1352630:CDS 55.0%
GCGACACAAACCTGTGGATG+TGG + tig0012674:2132-2151 Msa1352630:CDS 55.0%
GAATTGGGGAGACCAGTGCG+CGG - tig0012674:428-447 None:intergenic 60.0%
ACCCATGTGGCATGTGTCCG+TGG - tig0012674:814-833 None:intergenic 60.0%
GAATTGGGGAGACCAGTGCG+CGG - tig0012674:428-447 None:intergenic 60.0%
ACCCATGTGGCATGTGTCCG+TGG - tig0012674:814-833 None:intergenic 60.0%
! TGCACCTGCATCTGGGGCCG+TGG + tig0012674:1110-1129 Msa1352630:CDS 70.0%
! TGCACCTGCATCTGGGGCCG+TGG + tig0012674:1110-1129 Msa1352630:CDS 70.0%
! GGTGCCACGGCCCCAGATGC+AGG - tig0012674:1117-1136 None:intergenic 75.0%
! GGTGCCACGGCCCCAGATGC+AGG - tig0012674:1117-1136 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0012674 gene 300 2549 300 ID=Msa1352630;Name=Msa1352630
tig0012674 mRNA 300 2549 300 ID=Msa1352630-mRNA-1;Parent=Msa1352630;Name=Msa1352630-mRNA-1;_AED=0.00;_eAED=0.00;_QI=85|1|1|1|1|1|3|370|179
tig0012674 exon 300 562 300 ID=Msa1352630-mRNA-1:exon:8268;Parent=Msa1352630-mRNA-1
tig0012674 exon 1109 1327 1109 ID=Msa1352630-mRNA-1:exon:8269;Parent=Msa1352630-mRNA-1
tig0012674 exon 2037 2549 2037 ID=Msa1352630-mRNA-1:exon:8270;Parent=Msa1352630-mRNA-1
tig0012674 five_prime_UTR 300 384 300 ID=Msa1352630-mRNA-1:five_prime_utr;Parent=Msa1352630-mRNA-1
tig0012674 CDS 385 562 385 ID=Msa1352630-mRNA-1:cds;Parent=Msa1352630-mRNA-1
tig0012674 CDS 1109 1327 1109 ID=Msa1352630-mRNA-1:cds;Parent=Msa1352630-mRNA-1
tig0012674 CDS 2037 2179 2037 ID=Msa1352630-mRNA-1:cds;Parent=Msa1352630-mRNA-1
tig0012674 three_prime_UTR 2180 2549 2180 ID=Msa1352630-mRNA-1:three_prime_utr;Parent=Msa1352630-mRNA-1
Gene Sequence

>Msa1352630

ATGGCCATGGCTGGTGCTGCTTTCTCTACAATTACTACTACCGCGCACTGGTCTCCCCAATTCGTTCGCGTTCCAATCACTCATAGCTCTCTCTCTTTTCGATTTTCAACTCCAATTCTCAATCGCCGCTTTAGCCCTAAACCTCTCTCAATTCGATCACTTTCCGTTATTGCTGCCGCTGCACCTGCATCTGGGGCCGTGGCACCTGCAATTTCGCTTACAGATAATGCACTCAATCACTTGAATAAGATGAGGTCTGAACGAAGTCAAGATTTGTGTTTAAGAATTGGTGTCAAACAAGGTGGGTGCTCTGGTATGTCATACACAATGGATTTTGAGGACAGGGCTAATGCAAGGCCAGACGACTCCATCATTGAATACAAAGGTTTTGTCATTGTTTGTGATCCTAAGAGCCTACTCTTCGTATTTGGAATGCAATTAGACTACAGTGATGCTCTGATTGGAGGAGGCTTCAATTTCAAGAATCCTAATGCGACACAAACCTGTGGATGTGGTAAATCATTTAATGCAGAAATGTAA

Protein sequence

>Msa1352630

MAMAGAAFSTITTTAHWSPQFVRVPITHSSLSFRFSTPILNRRFSPKPLSIRSLSVIAAAAPASGAVAPAISLTDNALNHLNKMRSERSQDLCLRIGVKQGGCSGMSYTMDFEDRANARPDDSIIEYKGFVIVCDPKSLLFVFGMQLDYSDALIGGGFNFKNPNATQTCGCGKSFNAEM*