AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0600500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0600500 MtrunA17_Chr4g0021981 99.403 335 2 0 1 335 35 369 0.0 696
Msa0600500 MtrunA17_Chr4g0022021 85.373 335 49 0 1 335 35 369 0.0 613
Msa0600500 MtrunA17_Chr5g0432251 42.229 341 185 7 1 334 24 359 8.36e-82 252
Msa0600500 MtrunA17_Chr3g0121301 39.039 333 192 6 4 332 34 359 1.48e-81 252
Msa0600500 MtrunA17_Chr5g0432301 39.763 337 193 6 3 333 27 359 2.52e-78 243
Msa0600500 MtrunA17_Chr5g0432241 39.233 339 194 7 3 334 27 360 1.22e-72 229
Msa0600500 MtrunA17_Chr7g0276401 41.590 327 171 10 2 315 37 356 2.05e-72 229
Msa0600500 MtrunA17_Chr7g0276411 38.318 321 179 11 7 315 30 343 1.29e-70 224
Msa0600500 MtrunA17_Chr3g0128011 36.364 319 190 8 10 320 90 403 2.40e-67 217
Msa0600500 MtrunA17_Chr5g0448091 38.838 327 172 11 10 320 35 349 3.39e-67 215
Msa0600500 MtrunA17_Chr8g0345851 46.341 246 123 6 73 315 32 271 3.87e-65 207
Msa0600500 MtrunA17_Chr5g0432211 37.202 336 191 7 3 334 26 345 9.18e-65 208
Msa0600500 MtrunA17_Chr4g0040621 36.416 346 189 8 4 334 40 369 1.07e-64 209
Msa0600500 MtrunA17_Chr5g0432261 37.168 339 177 7 1 334 20 327 3.91e-64 206
Msa0600500 MtrunA17_Chr8g0367491 36.176 340 192 12 3 324 36 368 4.07e-64 207
Msa0600500 MtrunA17_Chr1g0188391 36.628 344 202 9 1 334 24 361 7.06e-64 206
Msa0600500 MtrunA17_Chr7g0219161 38.298 329 185 8 1 320 24 343 8.29e-62 201
Msa0600500 MtrunA17_Chr8g0367441 36.593 317 184 9 10 315 48 358 2.47e-61 200
Msa0600500 MtrunA17_Chr7g0219141 35.447 347 198 9 1 334 24 357 7.46e-59 193
Msa0600500 MtrunA17_Chr8g0367451 35.202 321 191 9 10 319 47 361 1.32e-58 193
Msa0600500 MtrunA17_Chr8g0367501 35.849 318 187 9 9 315 33 344 2.03e-58 194
Msa0600500 MtrunA17_Chr7g0223241 34.639 332 205 6 3 331 25 347 1.71e-57 189
Msa0600500 MtrunA17_Chr7g0223231 34.139 331 206 7 4 331 26 347 7.70e-57 187
Msa0600500 MtrunA17_Chr1g0188371 35.873 315 189 9 8 314 31 340 3.22e-55 184
Msa0600500 MtrunA17_Chr8g0367381 35.082 305 164 9 8 302 46 326 2.90e-54 180
Msa0600500 MtrunA17_Chr4g0046531 34.706 340 209 8 1 334 386 718 3.29e-54 189
Msa0600500 MtrunA17_Chr4g0046531 34.218 339 210 8 1 333 24 355 3.75e-53 186
Msa0600500 MtrunA17_Chr4g0046361 32.647 340 215 9 4 334 27 361 4.16e-53 178
Msa0600500 MtrunA17_Chr4g0014641 34.604 341 209 8 4 334 27 363 1.47e-52 177
Msa0600500 MtrunA17_Chr3g0085211 34.688 320 195 10 10 321 43 356 1.46e-51 174
Msa0600500 MtrunA17_Chr7g0218301 35.866 329 186 10 10 321 41 361 1.56e-51 174
Msa0600500 MtrunA17_Chr2g0307521 35.514 321 186 10 10 318 35 346 7.88e-51 172
Msa0600500 MtrunA17_Chr7g0218271 36.474 329 184 10 10 321 41 361 1.07e-50 172
Msa0600500 MtrunA17_Chr4g0014561 34.795 342 209 8 3 334 26 363 6.17e-50 170
Msa0600500 MtrunA17_Chr1g0200491 34.985 323 192 8 10 320 41 357 6.31e-50 170
Msa0600500 MtrunA17_Chr1g0163621 33.333 324 196 11 10 320 52 368 8.00e-50 170
Msa0600500 MtrunA17_Chr7g0218211 35.185 324 190 11 10 321 40 355 8.51e-50 170
Msa0600500 MtrunA17_Chr4g0014681 34.503 342 210 8 3 334 26 363 6.61e-49 167
Msa0600500 MtrunA17_Chr4g0046341 34.694 343 207 9 4 334 27 364 7.53e-49 167
Msa0600500 MtrunA17_Chr7g0218261 35.093 322 192 11 10 321 40 354 1.14e-48 167
Msa0600500 MtrunA17_Chr1g0163611 32.448 339 207 12 10 333 38 369 7.72e-48 165
Msa0600500 MtrunA17_Chr3g0085201 32.500 320 202 9 10 321 30 343 1.52e-47 164
Msa0600500 MtrunA17_Chr3g0130011 32.523 329 212 8 9 331 31 355 1.74e-47 164
Msa0600500 MtrunA17_Chr1g0163601 33.333 324 196 11 10 320 38 354 2.02e-47 164
Msa0600500 MtrunA17_Chr7g0218181 33.951 324 191 11 10 321 41 353 2.03e-47 164
Msa0600500 MtrunA17_Chr7g0218131 34.056 323 193 10 10 320 41 355 7.01e-47 162
Msa0600500 MtrunA17_Chr2g0314271 33.435 329 208 9 9 331 28 351 2.60e-46 160
Msa0600500 MtrunA17_Chr3g0130061 31.818 330 213 9 9 331 31 355 6.22e-44 154
Msa0600500 MtrunA17_Chr4g0014661 32.353 340 214 8 3 334 26 357 3.96e-41 147
Msa0600500 MtrunA17_Chr4g0014591 31.751 337 220 7 3 334 26 357 1.07e-37 137
Msa0600500 MtrunA17_Chr6g0482291 42.857 161 81 4 156 315 7 157 1.74e-37 132
Msa0600500 MtrunA17_Chr8g0367401 49.091 110 55 1 127 236 2 110 2.18e-30 112
Msa0600500 MtrunA17_Chr7g0219171 42.537 134 72 3 204 334 117 248 6.58e-30 114
Msa0600500 MtrunA17_Chr4g0011691 46.875 96 51 0 238 333 140 235 1.36e-26 105
Msa0600500 MtrunA17_Chr4g0014601 30.252 238 162 4 3 239 26 260 4.08e-24 99.4
Msa0600500 MtrunA17_Chr8g0367461 46.316 95 47 3 223 315 1 93 3.99e-20 84.3
Msa0600500 MtrunA17_Chr1g0170941 53.333 75 34 1 159 233 2 75 1.47e-19 81.6
Msa0600500 MtrunA17_Chr8g0367421 40.000 110 48 2 127 236 2 93 5.42e-18 79.0
Msa0600500 MtrunA17_Chr8g0367391 46.512 86 42 4 232 315 32 115 2.95e-17 77.4
Msa0600500 MtrunA17_Chr8g0367471 42.105 76 43 1 150 225 1 75 6.52e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0600500 AT5G54160.1 38.318 321 185 7 8 321 34 348 9.68e-73 229
Msa0600500 AT1G77520.1 37.574 338 190 9 10 331 46 378 1.08e-64 209
Msa0600500 AT4G35160.1 34.393 346 206 6 4 333 40 380 1.17e-61 201
Msa0600500 AT1G51990.1 32.840 338 211 9 8 334 30 362 6.01e-57 189
Msa0600500 AT1G33030.1 36.760 321 186 11 10 320 23 336 9.88e-56 185
Msa0600500 AT1G63140.2 36.364 330 189 9 8 321 44 368 9.12e-55 184
Msa0600500 AT1G63140.4 36.474 329 188 9 9 321 65 388 1.61e-54 183
Msa0600500 AT1G51990.2 32.544 338 212 9 8 334 30 362 1.75e-54 182
Msa0600500 AT1G77530.1 37.353 340 192 10 8 331 44 378 2.94e-54 182
Msa0600500 AT4G35150.1 29.706 340 187 6 4 333 26 323 6.85e-53 177
Msa0600500 AT5G53810.1 34.694 343 196 10 10 335 42 373 3.77e-52 177
Msa0600500 AT3G53140.1 35.224 335 201 10 8 331 27 356 4.45e-50 171
Msa0600500 AT1G62900.1 45.026 191 101 3 133 321 4 192 2.42e-48 161
Msa0600500 AT1G21130.1 35.207 338 197 13 10 333 42 371 6.62e-46 160
Msa0600500 AT1G21100.1 35.207 338 197 12 10 333 42 371 1.41e-45 159
Msa0600500 AT5G37170.2 36.052 233 142 5 104 331 1 231 2.01e-45 155
Msa0600500 AT5G37170.1 37.981 208 124 4 127 331 126 331 1.85e-44 155
Msa0600500 AT1G21120.1 34.320 338 200 12 10 333 42 371 5.27e-44 155
Msa0600500 AT1G21110.1 33.728 338 202 12 10 333 42 371 1.46e-43 154
Msa0600500 AT1G21120.2 34.320 338 200 12 10 333 90 419 1.60e-43 155
Msa0600500 AT1G76790.1 34.954 329 189 12 10 321 32 352 2.20e-41 148
Msa0600500 AT5G37170.3 39.560 182 105 4 153 331 4 183 8.24e-41 141
Msa0600500 AT1G33030.2 35.745 235 138 8 10 236 23 252 4.50e-31 118
Msa0600500 AT1G33030.3 35.745 235 138 8 10 236 23 252 5.59e-31 118
Msa0600500 AT1G63140.1 32.780 241 144 7 10 236 66 302 1.72e-26 107
Msa0600500 AT1G21130.2 33.891 239 140 10 10 236 42 274 3.02e-21 92.4
Msa0600500 AT1G63140.3 30.556 216 132 7 10 211 66 277 1.25e-16 79.3
Msa0600500 AT1G77530.2 32.727 220 130 8 10 215 46 261 7.01e-15 73.9

Find 109 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCAACCAAAGACTTAATT+TGG 0.166048 4_2:+41986734 None:intergenic
CAATATAAAATTAAAGAAAT+TGG 0.177243 4_2:-41985759 Msa0600500:three_prime_UTR
GTAAATGGTTCATTTCCTTC+TGG 0.225351 4_2:+41986289 None:intergenic
TGCTTGGACAAATTGAAATA+TGG 0.256837 4_2:-41987272 Msa0600500:five_prime_UTR
GTTTAACCAAATTAAGTCTT+TGG 0.272207 4_2:-41986740 Msa0600500:CDS
TGGGTGATACCATCAAAATT+AGG 0.296621 4_2:+41986613 None:intergenic
ATTTGCGAATCCAACATAAT+AGG 0.302154 4_2:+41987415 None:intergenic
GCTATCCCAGTGTCGGTAAA+TGG 0.307296 4_2:+41986274 None:intergenic
TATAAAACTTGATTAATAAT+AGG 0.311305 4_2:+41987331 None:intergenic
CAAATGGCACTGCTTTCTTT+AGG 0.311670 4_2:-41986888 Msa0600500:CDS
GGGTGATACCATCAAAATTA+GGG 0.318382 4_2:+41986614 None:intergenic
GCTTGACACGTGCATCAAAA+TGG 0.327202 4_2:-41987020 Msa0600500:CDS
TAAATGGTTCATTTCCTTCT+GGG 0.333897 4_2:+41986290 None:intergenic
TTGTGTTGTGTGGCTTTACT+TGG 0.351030 4_2:-41986037 Msa0600500:three_prime_UTR
TAAACATTGATAATATCTTT+AGG 0.357758 4_2:-41987459 Msa0600500:five_prime_UTR
CTTAAAAGTAGAGTGGAATC+AGG 0.364299 4_2:+41987114 None:intergenic
ATTCTGCACAATTTGAGTTA+AGG 0.365186 4_2:+41987155 None:intergenic
GTGTCGAGGGCTGTTATTGC+TGG 0.396054 4_2:-41986775 Msa0600500:CDS
ACAATTTGAGTTAAGGATAG+TGG 0.413559 4_2:+41987162 None:intergenic
ATTAGTGAAATTATAAAAGA+AGG 0.414681 4_2:-41986916 Msa0600500:CDS
AAGAAAGAACTGAAGAGAAC+TGG 0.424963 4_2:-41986213 Msa0600500:CDS
GCCATAACGGTCTATAATAT+CGG 0.426995 4_2:+41987188 None:intergenic
TTAGCAGGGTTCAAATGAAA+AGG 0.429287 4_2:+41986943 None:intergenic
CATCTTCCATGAATTTAGAC+TGG 0.429361 4_2:+41986109 None:intergenic
AATATAAAATTAAAGAAATT+GGG 0.434737 4_2:-41985758 Msa0600500:three_prime_UTR
ATTTCACTAATAAAGTTAGC+AGG 0.435103 4_2:+41986928 None:intergenic
GTTATTGCTGGATACAAAGA+TGG 0.437111 4_2:-41986763 Msa0600500:CDS
ATGGAAGATGACGAGTTTGT+TGG 0.440293 4_2:-41986096 Msa0600500:three_prime_UTR
AGTCTTTGGTTGATGTTGGC+GGG 0.446010 4_2:-41986726 Msa0600500:CDS
GTCAAAGATTCCTATTATGT+TGG 0.447143 4_2:-41987425 Msa0600500:five_prime_UTR
GCATTCCCAGTCTAAATTCA+TGG 0.449506 4_2:-41986115 Msa0600500:exon
ACTGCTTTCTTTAGGTGTCA+TGG 0.450664 4_2:-41986880 Msa0600500:CDS
AAAGGGGAATAAACAGTGTC+TGG 0.451909 4_2:-41987506 Msa0600500:five_prime_UTR
ATAAAAGAAGGCACAACAAA+TGG 0.457011 4_2:-41986904 Msa0600500:CDS
AAGTCTTTGGTTGATGTTGG+CGG 0.462461 4_2:-41986727 Msa0600500:CDS
CATGAACAATTTGAAATGAC+GGG 0.462928 4_2:-41986856 Msa0600500:CDS
AGGATAGTGGTTTGCCATAA+CGG 0.463766 4_2:+41987175 None:intergenic
ATAATAGGAATCTTTGACCT+AGG 0.465029 4_2:+41987430 None:intergenic
TTCAAATTATGATACACAAA+AGG 0.466985 4_2:+41985989 None:intergenic
CTTCTTCCTTGCTCACACCC+TGG 0.474811 4_2:+41987304 None:intergenic
AAGGCAATACCAGAGAAAAC+AGG 0.476074 4_2:-41986343 Msa0600500:CDS
AATTAAAGAAATTGGGTCAT+GGG 0.478858 4_2:-41985751 Msa0600500:three_prime_UTR
GCCGATATTATAGACCGTTA+TGG 0.483784 4_2:-41987189 Msa0600500:CDS
GGCAGTGGATTCTTCATGAC+TGG 0.484877 4_2:-41986405 Msa0600500:intron
TAACTTTGATTTGCCTCATG+TGG 0.490029 4_2:-41986647 Msa0600500:CDS
ATTAAGTCTTTGGTTGATGT+TGG 0.491660 4_2:-41986730 Msa0600500:CDS
AAACATGTCTCCTCCAACAT+GGG 0.498630 4_2:+41986594 None:intergenic
GTCTTTGGTTGATGTTGGCG+GGG 0.504180 4_2:-41986725 Msa0600500:CDS
TTAAAAGTAGAGTGGAATCA+GGG 0.508759 4_2:+41987115 None:intergenic
GAAGAAGAAGAATCATTGCT+TGG 0.509681 4_2:-41987288 Msa0600500:five_prime_UTR
TTTGATGGTATCACCCATGT+TGG 0.511129 4_2:-41986607 Msa0600500:CDS
GATATTGAAGAATTGTAGAA+AGG 0.519416 4_2:-41986362 Msa0600500:CDS
AATGAACCATTTACCGACAC+TGG 0.520366 4_2:-41986280 Msa0600500:CDS
TGACTTGTTCAACCAAGGTA+TGG 0.521535 4_2:-41986815 Msa0600500:CDS
GATGGTATCACCCATGTTGG+AGG 0.521547 4_2:-41986604 Msa0600500:CDS
AGCTAGCTATGATTCATGCA+TGG 0.523703 4_2:-41985943 Msa0600500:three_prime_UTR
AAATTAAAGAAATTGGGTCA+TGG 0.525972 4_2:-41985752 Msa0600500:three_prime_UTR
GATCATTGTGGATCATGTAT+TGG 0.533084 4_2:-41986314 Msa0600500:CDS
ACAATTTGAAATGACGGGGT+TGG 0.533144 4_2:-41986851 Msa0600500:CDS
TCTTCAATATCTTTATGCAA+TGG 0.534210 4_2:+41986374 None:intergenic
CAAACATGTCTCCTCCAACA+TGG 0.536952 4_2:+41986593 None:intergenic
AAATACTTATTCAACGAGAC+AGG 0.536963 4_2:-41986190 Msa0600500:CDS
TTTGCCTCATGTGGTTTCAA+CGG 0.539222 4_2:-41986638 Msa0600500:CDS
TTTCACTAATAAAGTTAGCA+GGG 0.540307 4_2:+41986929 None:intergenic
GCTAGCTATGATTCATGCAT+GGG 0.540353 4_2:-41985942 Msa0600500:three_prime_UTR
CAAGCCGTAGAGAATTTCCC+CGG 0.542265 4_2:+41987038 None:intergenic
TGCTGATGCTATTTACATGA+AGG 0.545789 4_2:-41986557 Msa0600500:intron
TAGCAGGGTTCAAATGAAAA+GGG 0.549937 4_2:+41986944 None:intergenic
CATGAATCATAGCTAGCTCT+AGG 0.551516 4_2:+41985948 None:intergenic
AGGATAAGCTCTAACAATCT+CGG 0.552345 4_2:+41986684 None:intergenic
TCATGAACAATTTGAAATGA+CGG 0.554113 4_2:-41986857 Msa0600500:CDS
TTCGTATGTGTTGTGTTGTG+TGG 0.557358 4_2:-41986047 Msa0600500:three_prime_UTR
TTATTGCTGGATACAAAGAT+GGG 0.557554 4_2:-41986762 Msa0600500:CDS
TTTAAGAGTAATGAGAGTCA+TGG 0.559249 4_2:-41987097 Msa0600500:CDS
TATTGACCAGGGTGTGAGCA+AGG 0.559868 4_2:-41987310 Msa0600500:five_prime_UTR
CTGCTATCTGATCTGCTGAT+GGG 0.562055 4_2:+41985905 None:intergenic
ATATCTTTAGGTGTTTGCCT+AGG 0.565519 4_2:-41987447 Msa0600500:five_prime_UTR
AAACTTGATTAATAATAGGA+TGG 0.571512 4_2:+41987335 None:intergenic
ATCTTCCATGAATTTAGACT+GGG 0.572279 4_2:+41986110 None:intergenic
CACCGCTAGAATTGTGTCGA+GGG 0.576078 4_2:-41986788 Msa0600500:CDS
TAGCGGTGCAAACCATACCT+TGG 0.586631 4_2:+41986803 None:intergenic
CATTACTCTTAAAAGTAGAG+TGG 0.588009 4_2:+41987107 None:intergenic
TCTGCTATCTGATCTGCTGA+TGG 0.591530 4_2:+41985904 None:intergenic
GCACCGCTAGAATTGTGTCG+AGG 0.594031 4_2:-41986789 Msa0600500:CDS
ATGTAAATAGCATCAGCACT+AGG 0.596076 4_2:+41986562 None:intergenic
GTCAAATGCTATCCCAGTGT+CGG 0.602762 4_2:+41986267 None:intergenic
TCTTTGGTTGATGTTGGCGG+GGG 0.603652 4_2:-41986724 Msa0600500:CDS
TGCTCTGCCATGCATCATTG+AGG 0.607068 4_2:-41986137 Msa0600500:CDS
ATGTTGCTTGCTCACAACGC+TGG 0.609694 4_2:-41986241 Msa0600500:CDS
ATGAACCATTTACCGACACT+GGG 0.609768 4_2:-41986279 Msa0600500:CDS
AAGTTAATAGCTTGAATGTG+AGG 0.610156 4_2:+41986664 None:intergenic
AACAGGAAAGGTGATCATTG+TGG 0.615274 4_2:-41986326 Msa0600500:CDS
GAAACCGGGGAAATTCTCTA+CGG 0.620852 4_2:-41987042 Msa0600500:CDS
TACAATGACTTGTTCAACCA+AGG 0.624846 4_2:-41986820 Msa0600500:CDS
AGCTATGATTCATGCATGGG+GGG 0.627479 4_2:-41985939 Msa0600500:three_prime_UTR
CTAGCTATGATTCATGCATG+GGG 0.649012 4_2:-41985941 Msa0600500:three_prime_UTR
TGATTCTCTAGCAACAACAT+TGG 0.649459 4_2:+41986967 None:intergenic
GATCATGTATTGGACCCAGA+AGG 0.652817 4_2:-41986304 Msa0600500:CDS
GGGAATGCCTCAATGATGCA+TGG 0.663145 4_2:+41986130 None:intergenic
TAAAAGTAGAGTGGAATCAG+GGG 0.667415 4_2:+41987116 None:intergenic
AGTAGAGTGGAATCAGGGGA+AGG 0.670234 4_2:+41987120 None:intergenic
AATACCAGAGAAAACAGGAA+AGG 0.671132 4_2:-41986338 Msa0600500:CDS
ATGAACAATTTGAAATGACG+GGG 0.676832 4_2:-41986855 Msa0600500:CDS
GGTGATACCATCAAAATTAG+GGG 0.681590 4_2:+41986615 None:intergenic
TTGCTTGCTCACAACGCTGG+TGG 0.684054 4_2:-41986238 Msa0600500:CDS
GAATCATAGCTAGCTCTAGG+TGG 0.688847 4_2:+41985951 None:intergenic
AGCCCTCGACACAATTCTAG+CGG 0.693934 4_2:+41986786 None:intergenic
TAGCTATGATTCATGCATGG+GGG 0.705108 4_2:-41985940 Msa0600500:three_prime_UTR
GGGGCCGTTGAAACCACATG+AGG 0.722984 4_2:+41986634 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAACTTGATTAATAAT+AGG + chr4_2:41985953-41985972 None:intergenic 10.0%
!! CAATATAAAATTAAAGAAAT+TGG - chr4_2:41987522-41987541 Msa0600500:five_prime_UTR 10.0%
!! TATAAAACTTGATTAATAAT+AGG + chr4_2:41985953-41985972 None:intergenic 10.0%
!! CAATATAAAATTAAAGAAAT+TGG - chr4_2:41987522-41987541 Msa0600500:five_prime_UTR 10.0%
!!! TAAACATTGATAATATCTTT+AGG - chr4_2:41985822-41985841 Msa0600500:three_prime_UTR 15.0%
!! ATTAGTGAAATTATAAAAGA+AGG - chr4_2:41986365-41986384 Msa0600500:CDS 15.0%
!! ACACATGAATTTAATTATAA+TGG - chr4_2:41986803-41986822 Msa0600500:CDS 15.0%
!!! TAAACATTGATAATATCTTT+AGG - chr4_2:41985822-41985841 Msa0600500:three_prime_UTR 15.0%
!! ATTAGTGAAATTATAAAAGA+AGG - chr4_2:41986365-41986384 Msa0600500:CDS 15.0%
!! ACACATGAATTTAATTATAA+TGG - chr4_2:41986803-41986822 Msa0600500:CDS 15.0%
!! AAACTTGATTAATAATAGGA+TGG + chr4_2:41985949-41985968 None:intergenic 20.0%
!! TTTCAAATTTATTGTGCATT+TGG - chr4_2:41986775-41986794 Msa0600500:CDS 20.0%
!!! TTTAAAATTGACCTTATCTT+TGG - chr4_2:41986847-41986866 Msa0600500:CDS 20.0%
!! TTAAAATTGACCTTATCTTT+GGG - chr4_2:41986848-41986867 Msa0600500:CDS 20.0%
!! TTCAAATTATGATACACAAA+AGG + chr4_2:41987295-41987314 None:intergenic 20.0%
!!! AGTTAAATGAATTTTAGAAG+AGG + chr4_2:41987490-41987509 None:intergenic 20.0%
!! AAACTTGATTAATAATAGGA+TGG + chr4_2:41985949-41985968 None:intergenic 20.0%
!! TTTCAAATTTATTGTGCATT+TGG - chr4_2:41986775-41986794 Msa0600500:CDS 20.0%
!!! TTTAAAATTGACCTTATCTT+TGG - chr4_2:41986847-41986866 Msa0600500:CDS 20.0%
!! TTAAAATTGACCTTATCTTT+GGG - chr4_2:41986848-41986867 Msa0600500:CDS 20.0%
!! TTCAAATTATGATACACAAA+AGG + chr4_2:41987295-41987314 None:intergenic 20.0%
!!! AGTTAAATGAATTTTAGAAG+AGG + chr4_2:41987490-41987509 None:intergenic 20.0%
!!! AATCAAGTTTTATATTGACC+AGG - chr4_2:41985959-41985978 Msa0600500:three_prime_UTR 25.0%
!!! ATCAAGTTTTATATTGACCA+GGG - chr4_2:41985960-41985979 Msa0600500:three_prime_UTR 25.0%
! TTTCACTAATAAAGTTAGCA+GGG + chr4_2:41986355-41986374 None:intergenic 25.0%
! ATTTCACTAATAAAGTTAGC+AGG + chr4_2:41986356-41986375 None:intergenic 25.0%
!! TCATGAACAATTTGAAATGA+CGG - chr4_2:41986424-41986443 Msa0600500:intron 25.0%
! GTTTAACCAAATTAAGTCTT+TGG - chr4_2:41986541-41986560 Msa0600500:intron 25.0%
! TCTTCAATATCTTTATGCAA+TGG + chr4_2:41986910-41986929 None:intergenic 25.0%
! GATATTGAAGAATTGTAGAA+AGG - chr4_2:41986919-41986938 Msa0600500:CDS 25.0%
!!! GAATTTTAGAAGAGGAAAAA+GGG + chr4_2:41987482-41987501 None:intergenic 25.0%
!!! TGAATTTTAGAAGAGGAAAA+AGG + chr4_2:41987483-41987502 None:intergenic 25.0%
! AAATTAAAGAAATTGGGTCA+TGG - chr4_2:41987529-41987548 Msa0600500:five_prime_UTR 25.0%
! AATTAAAGAAATTGGGTCAT+GGG - chr4_2:41987530-41987549 Msa0600500:five_prime_UTR 25.0%
!!! AATCAAGTTTTATATTGACC+AGG - chr4_2:41985959-41985978 Msa0600500:three_prime_UTR 25.0%
!!! ATCAAGTTTTATATTGACCA+GGG - chr4_2:41985960-41985979 Msa0600500:three_prime_UTR 25.0%
! TTTCACTAATAAAGTTAGCA+GGG + chr4_2:41986355-41986374 None:intergenic 25.0%
! ATTTCACTAATAAAGTTAGC+AGG + chr4_2:41986356-41986375 None:intergenic 25.0%
!! TCATGAACAATTTGAAATGA+CGG - chr4_2:41986424-41986443 Msa0600500:intron 25.0%
! GTTTAACCAAATTAAGTCTT+TGG - chr4_2:41986541-41986560 Msa0600500:intron 25.0%
! TCTTCAATATCTTTATGCAA+TGG + chr4_2:41986910-41986929 None:intergenic 25.0%
! GATATTGAAGAATTGTAGAA+AGG - chr4_2:41986919-41986938 Msa0600500:CDS 25.0%
!!! GAATTTTAGAAGAGGAAAAA+GGG + chr4_2:41987482-41987501 None:intergenic 25.0%
!!! TGAATTTTAGAAGAGGAAAA+AGG + chr4_2:41987483-41987502 None:intergenic 25.0%
! AAATTAAAGAAATTGGGTCA+TGG - chr4_2:41987529-41987548 Msa0600500:five_prime_UTR 25.0%
! AATTAAAGAAATTGGGTCAT+GGG - chr4_2:41987530-41987549 Msa0600500:five_prime_UTR 25.0%
! TTGCTCAATTTTGCAAACAA+AGG - chr4_2:41985757-41985776 Msa0600500:three_prime_UTR 30.0%
! TGCTCAATTTTGCAAACAAA+GGG - chr4_2:41985758-41985777 Msa0600500:three_prime_UTR 30.0%
ATAATAGGAATCTTTGACCT+AGG + chr4_2:41985854-41985873 None:intergenic 30.0%
GTCAAAGATTCCTATTATGT+TGG - chr4_2:41985856-41985875 Msa0600500:three_prime_UTR 30.0%
ATTTGCGAATCCAACATAAT+AGG + chr4_2:41985869-41985888 None:intergenic 30.0%
TGCTTGGACAAATTGAAATA+TGG - chr4_2:41986009-41986028 Msa0600500:three_prime_UTR 30.0%
! ACAATTTGAGTTAAGGATAG+TGG + chr4_2:41986122-41986141 None:intergenic 30.0%
! ATTCTGCACAATTTGAGTTA+AGG + chr4_2:41986129-41986148 None:intergenic 30.0%
TTAAAAGTAGAGTGGAATCA+GGG + chr4_2:41986169-41986188 None:intergenic 30.0%
CATTACTCTTAAAAGTAGAG+TGG + chr4_2:41986177-41986196 None:intergenic 30.0%
TTTAAGAGTAATGAGAGTCA+TGG - chr4_2:41986184-41986203 Msa0600500:CDS 30.0%
!!! ATGTCATTTTTGTGTCTTGT+AGG + chr4_2:41986289-41986308 None:intergenic 30.0%
ACAAGACACAAAAATGACAT+TGG - chr4_2:41986289-41986308 Msa0600500:CDS 30.0%
! ATAAAAGAAGGCACAACAAA+TGG - chr4_2:41986377-41986396 Msa0600500:CDS 30.0%
! CATGAACAATTTGAAATGAC+GGG - chr4_2:41986425-41986444 Msa0600500:intron 30.0%
! ATGAACAATTTGAAATGACG+GGG - chr4_2:41986426-41986445 Msa0600500:intron 30.0%
TTATTGCTGGATACAAAGAT+GGG - chr4_2:41986519-41986538 Msa0600500:intron 30.0%
CATCAACCAAAGACTTAATT+TGG + chr4_2:41986550-41986569 None:intergenic 30.0%
! ATTAAGTCTTTGGTTGATGT+TGG - chr4_2:41986551-41986570 Msa0600500:intron 30.0%
AAGTTAATAGCTTGAATGTG+AGG + chr4_2:41986620-41986639 None:intergenic 30.0%
TAAATGGTTCATTTCCTTCT+GGG + chr4_2:41986994-41987013 None:intergenic 30.0%
AAATACTTATTCAACGAGAC+AGG - chr4_2:41987091-41987110 Msa0600500:CDS 30.0%
!!! TTTTGATGATGTTGTAACGA+GGG + chr4_2:41987120-41987139 None:intergenic 30.0%
!!! ATTTTGATGATGTTGTAACG+AGG + chr4_2:41987121-41987140 None:intergenic 30.0%
ATCTTCCATGAATTTAGACT+GGG + chr4_2:41987174-41987193 None:intergenic 30.0%
!!! ACTTGGAGTTTTGTTATCTA+AGG - chr4_2:41987261-41987280 Msa0600500:exon 30.0%
! TTGCTCAATTTTGCAAACAA+AGG - chr4_2:41985757-41985776 Msa0600500:three_prime_UTR 30.0%
! TGCTCAATTTTGCAAACAAA+GGG - chr4_2:41985758-41985777 Msa0600500:three_prime_UTR 30.0%
ATAATAGGAATCTTTGACCT+AGG + chr4_2:41985854-41985873 None:intergenic 30.0%
GTCAAAGATTCCTATTATGT+TGG - chr4_2:41985856-41985875 Msa0600500:three_prime_UTR 30.0%
ATTTGCGAATCCAACATAAT+AGG + chr4_2:41985869-41985888 None:intergenic 30.0%
TGCTTGGACAAATTGAAATA+TGG - chr4_2:41986009-41986028 Msa0600500:three_prime_UTR 30.0%
! ACAATTTGAGTTAAGGATAG+TGG + chr4_2:41986122-41986141 None:intergenic 30.0%
! ATTCTGCACAATTTGAGTTA+AGG + chr4_2:41986129-41986148 None:intergenic 30.0%
TTAAAAGTAGAGTGGAATCA+GGG + chr4_2:41986169-41986188 None:intergenic 30.0%
CATTACTCTTAAAAGTAGAG+TGG + chr4_2:41986177-41986196 None:intergenic 30.0%
TTTAAGAGTAATGAGAGTCA+TGG - chr4_2:41986184-41986203 Msa0600500:CDS 30.0%
!!! ATGTCATTTTTGTGTCTTGT+AGG + chr4_2:41986289-41986308 None:intergenic 30.0%
ACAAGACACAAAAATGACAT+TGG - chr4_2:41986289-41986308 Msa0600500:CDS 30.0%
! ATAAAAGAAGGCACAACAAA+TGG - chr4_2:41986377-41986396 Msa0600500:CDS 30.0%
! CATGAACAATTTGAAATGAC+GGG - chr4_2:41986425-41986444 Msa0600500:intron 30.0%
! ATGAACAATTTGAAATGACG+GGG - chr4_2:41986426-41986445 Msa0600500:intron 30.0%
TTATTGCTGGATACAAAGAT+GGG - chr4_2:41986519-41986538 Msa0600500:intron 30.0%
CATCAACCAAAGACTTAATT+TGG + chr4_2:41986550-41986569 None:intergenic 30.0%
! ATTAAGTCTTTGGTTGATGT+TGG - chr4_2:41986551-41986570 Msa0600500:intron 30.0%
AAGTTAATAGCTTGAATGTG+AGG + chr4_2:41986620-41986639 None:intergenic 30.0%
TAAATGGTTCATTTCCTTCT+GGG + chr4_2:41986994-41987013 None:intergenic 30.0%
AAATACTTATTCAACGAGAC+AGG - chr4_2:41987091-41987110 Msa0600500:CDS 30.0%
!!! TTTTGATGATGTTGTAACGA+GGG + chr4_2:41987120-41987139 None:intergenic 30.0%
!!! ATTTTGATGATGTTGTAACG+AGG + chr4_2:41987121-41987140 None:intergenic 30.0%
ATCTTCCATGAATTTAGACT+GGG + chr4_2:41987174-41987193 None:intergenic 30.0%
!!! ACTTGGAGTTTTGTTATCTA+AGG - chr4_2:41987261-41987280 Msa0600500:exon 30.0%
! GCTCAATTTTGCAAACAAAG+GGG - chr4_2:41985759-41985778 Msa0600500:three_prime_UTR 35.0%
ATATCTTTAGGTGTTTGCCT+AGG - chr4_2:41985834-41985853 Msa0600500:three_prime_UTR 35.0%
GAAGAAGAAGAATCATTGCT+TGG - chr4_2:41985993-41986012 Msa0600500:three_prime_UTR 35.0%
GCCATAACGGTCTATAATAT+CGG + chr4_2:41986096-41986115 None:intergenic 35.0%
TAAAAGTAGAGTGGAATCAG+GGG + chr4_2:41986168-41986187 None:intergenic 35.0%
CTTAAAAGTAGAGTGGAATC+AGG + chr4_2:41986170-41986189 None:intergenic 35.0%
AGTGCAGAAAAATCAGAAAC+CGG - chr4_2:41986224-41986243 Msa0600500:CDS 35.0%
TGATTCTCTAGCAACAACAT+TGG + chr4_2:41986317-41986336 None:intergenic 35.0%
TAGCAGGGTTCAAATGAAAA+GGG + chr4_2:41986340-41986359 None:intergenic 35.0%
TTAGCAGGGTTCAAATGAAA+AGG + chr4_2:41986341-41986360 None:intergenic 35.0%
!! TACAATGACTTGTTCAACCA+AGG - chr4_2:41986461-41986480 Msa0600500:intron 35.0%
GTTATTGCTGGATACAAAGA+TGG - chr4_2:41986518-41986537 Msa0600500:intron 35.0%
! AGGATAAGCTCTAACAATCT+CGG + chr4_2:41986600-41986619 None:intergenic 35.0%
!! TAACTTTGATTTGCCTCATG+TGG - chr4_2:41986634-41986653 Msa0600500:CDS 35.0%
GGTGATACCATCAAAATTAG+GGG + chr4_2:41986669-41986688 None:intergenic 35.0%
GGGTGATACCATCAAAATTA+GGG + chr4_2:41986670-41986689 None:intergenic 35.0%
TGGGTGATACCATCAAAATT+AGG + chr4_2:41986671-41986690 None:intergenic 35.0%
ATGTAAATAGCATCAGCACT+AGG + chr4_2:41986722-41986741 None:intergenic 35.0%
! TGCTGATGCTATTTACATGA+AGG - chr4_2:41986724-41986743 Msa0600500:CDS 35.0%
AATACCAGAGAAAACAGGAA+AGG - chr4_2:41986943-41986962 Msa0600500:CDS 35.0%
GATCATTGTGGATCATGTAT+TGG - chr4_2:41986967-41986986 Msa0600500:CDS 35.0%
GTAAATGGTTCATTTCCTTC+TGG + chr4_2:41986995-41987014 None:intergenic 35.0%
AAGAAAGAACTGAAGAGAAC+TGG - chr4_2:41987068-41987087 Msa0600500:CDS 35.0%
CATCTTCCATGAATTTAGAC+TGG + chr4_2:41987175-41987194 None:intergenic 35.0%
AGGAAAAAGGGAAGAAAATG+TGG + chr4_2:41987470-41987489 None:intergenic 35.0%
! GCTCAATTTTGCAAACAAAG+GGG - chr4_2:41985759-41985778 Msa0600500:three_prime_UTR 35.0%
ATATCTTTAGGTGTTTGCCT+AGG - chr4_2:41985834-41985853 Msa0600500:three_prime_UTR 35.0%
GAAGAAGAAGAATCATTGCT+TGG - chr4_2:41985993-41986012 Msa0600500:three_prime_UTR 35.0%
GCCATAACGGTCTATAATAT+CGG + chr4_2:41986096-41986115 None:intergenic 35.0%
TAAAAGTAGAGTGGAATCAG+GGG + chr4_2:41986168-41986187 None:intergenic 35.0%
CTTAAAAGTAGAGTGGAATC+AGG + chr4_2:41986170-41986189 None:intergenic 35.0%
AGTGCAGAAAAATCAGAAAC+CGG - chr4_2:41986224-41986243 Msa0600500:CDS 35.0%
TGATTCTCTAGCAACAACAT+TGG + chr4_2:41986317-41986336 None:intergenic 35.0%
TAGCAGGGTTCAAATGAAAA+GGG + chr4_2:41986340-41986359 None:intergenic 35.0%
TTAGCAGGGTTCAAATGAAA+AGG + chr4_2:41986341-41986360 None:intergenic 35.0%
!! TACAATGACTTGTTCAACCA+AGG - chr4_2:41986461-41986480 Msa0600500:intron 35.0%
GTTATTGCTGGATACAAAGA+TGG - chr4_2:41986518-41986537 Msa0600500:intron 35.0%
! AGGATAAGCTCTAACAATCT+CGG + chr4_2:41986600-41986619 None:intergenic 35.0%
!! TAACTTTGATTTGCCTCATG+TGG - chr4_2:41986634-41986653 Msa0600500:CDS 35.0%
GGTGATACCATCAAAATTAG+GGG + chr4_2:41986669-41986688 None:intergenic 35.0%
GGGTGATACCATCAAAATTA+GGG + chr4_2:41986670-41986689 None:intergenic 35.0%
TGGGTGATACCATCAAAATT+AGG + chr4_2:41986671-41986690 None:intergenic 35.0%
ATGTAAATAGCATCAGCACT+AGG + chr4_2:41986722-41986741 None:intergenic 35.0%
! TGCTGATGCTATTTACATGA+AGG - chr4_2:41986724-41986743 Msa0600500:CDS 35.0%
AATACCAGAGAAAACAGGAA+AGG - chr4_2:41986943-41986962 Msa0600500:CDS 35.0%
GATCATTGTGGATCATGTAT+TGG - chr4_2:41986967-41986986 Msa0600500:CDS 35.0%
GTAAATGGTTCATTTCCTTC+TGG + chr4_2:41986995-41987014 None:intergenic 35.0%
AAGAAAGAACTGAAGAGAAC+TGG - chr4_2:41987068-41987087 Msa0600500:CDS 35.0%
CATCTTCCATGAATTTAGAC+TGG + chr4_2:41987175-41987194 None:intergenic 35.0%
AGGAAAAAGGGAAGAAAATG+TGG + chr4_2:41987470-41987489 None:intergenic 35.0%
AAAGGGGAATAAACAGTGTC+TGG - chr4_2:41985775-41985794 Msa0600500:three_prime_UTR 40.0%
!!! TTTTGCTCTAAAAGCTGTCG+TGG - chr4_2:41986058-41986077 Msa0600500:three_prime_UTR 40.0%
GCCGATATTATAGACCGTTA+TGG - chr4_2:41986092-41986111 Msa0600500:three_prime_UTR 40.0%
! AGGATAGTGGTTTGCCATAA+CGG + chr4_2:41986109-41986128 None:intergenic 40.0%
GTGCAGAAAAATCAGAAACC+GGG - chr4_2:41986225-41986244 Msa0600500:CDS 40.0%
TGCAGAAAAATCAGAAACCG+GGG - chr4_2:41986226-41986245 Msa0600500:CDS 40.0%
CAAATGGCACTGCTTTCTTT+AGG - chr4_2:41986393-41986412 Msa0600500:CDS 40.0%
ACTGCTTTCTTTAGGTGTCA+TGG - chr4_2:41986401-41986420 Msa0600500:CDS 40.0%
! ACAATTTGAAATGACGGGGT+TGG - chr4_2:41986430-41986449 Msa0600500:intron 40.0%
!! TGACTTGTTCAACCAAGGTA+TGG - chr4_2:41986466-41986485 Msa0600500:intron 40.0%
! AAGTCTTTGGTTGATGTTGG+CGG - chr4_2:41986554-41986573 Msa0600500:intron 40.0%
TTTGCCTCATGTGGTTTCAA+CGG - chr4_2:41986643-41986662 Msa0600500:CDS 40.0%
! TTTGATGGTATCACCCATGT+TGG - chr4_2:41986674-41986693 Msa0600500:CDS 40.0%
AAACATGTCTCCTCCAACAT+GGG + chr4_2:41986690-41986709 None:intergenic 40.0%
TGACCTTATCTTTGGGTGAA+TGG - chr4_2:41986855-41986874 Msa0600500:CDS 40.0%
AAGGCAATACCAGAGAAAAC+AGG - chr4_2:41986938-41986957 Msa0600500:CDS 40.0%
! ATCACCTTTCCTGTTTTCTC+TGG + chr4_2:41986950-41986969 None:intergenic 40.0%
AACAGGAAAGGTGATCATTG+TGG - chr4_2:41986955-41986974 Msa0600500:CDS 40.0%
AATGAACCATTTACCGACAC+TGG - chr4_2:41987001-41987020 Msa0600500:CDS 40.0%
ATGAACCATTTACCGACACT+GGG - chr4_2:41987002-41987021 Msa0600500:CDS 40.0%
GCATTCCCAGTCTAAATTCA+TGG - chr4_2:41987166-41987185 Msa0600500:CDS 40.0%
ATGGAAGATGACGAGTTTGT+TGG - chr4_2:41987185-41987204 Msa0600500:CDS 40.0%
TTCGTATGTGTTGTGTTGTG+TGG - chr4_2:41987234-41987253 Msa0600500:CDS 40.0%
! TTGTGTTGTGTGGCTTTACT+TGG - chr4_2:41987244-41987263 Msa0600500:CDS 40.0%
! CATGAATCATAGCTAGCTCT+AGG + chr4_2:41987336-41987355 None:intergenic 40.0%
AGCTAGCTATGATTCATGCA+TGG - chr4_2:41987338-41987357 Msa0600500:five_prime_UTR 40.0%
GCTAGCTATGATTCATGCAT+GGG - chr4_2:41987339-41987358 Msa0600500:five_prime_UTR 40.0%
CTAGCTATGATTCATGCATG+GGG - chr4_2:41987340-41987359 Msa0600500:five_prime_UTR 40.0%
TAGCTATGATTCATGCATGG+GGG - chr4_2:41987341-41987360 Msa0600500:five_prime_UTR 40.0%
AAAGGGGAATAAACAGTGTC+TGG - chr4_2:41985775-41985794 Msa0600500:three_prime_UTR 40.0%
!!! TTTTGCTCTAAAAGCTGTCG+TGG - chr4_2:41986058-41986077 Msa0600500:three_prime_UTR 40.0%
GCCGATATTATAGACCGTTA+TGG - chr4_2:41986092-41986111 Msa0600500:three_prime_UTR 40.0%
! AGGATAGTGGTTTGCCATAA+CGG + chr4_2:41986109-41986128 None:intergenic 40.0%
GTGCAGAAAAATCAGAAACC+GGG - chr4_2:41986225-41986244 Msa0600500:CDS 40.0%
TGCAGAAAAATCAGAAACCG+GGG - chr4_2:41986226-41986245 Msa0600500:CDS 40.0%
CAAATGGCACTGCTTTCTTT+AGG - chr4_2:41986393-41986412 Msa0600500:CDS 40.0%
ACTGCTTTCTTTAGGTGTCA+TGG - chr4_2:41986401-41986420 Msa0600500:CDS 40.0%
! ACAATTTGAAATGACGGGGT+TGG - chr4_2:41986430-41986449 Msa0600500:intron 40.0%
!! TGACTTGTTCAACCAAGGTA+TGG - chr4_2:41986466-41986485 Msa0600500:intron 40.0%
! AAGTCTTTGGTTGATGTTGG+CGG - chr4_2:41986554-41986573 Msa0600500:intron 40.0%
TTTGCCTCATGTGGTTTCAA+CGG - chr4_2:41986643-41986662 Msa0600500:CDS 40.0%
! TTTGATGGTATCACCCATGT+TGG - chr4_2:41986674-41986693 Msa0600500:CDS 40.0%
AAACATGTCTCCTCCAACAT+GGG + chr4_2:41986690-41986709 None:intergenic 40.0%
TGACCTTATCTTTGGGTGAA+TGG - chr4_2:41986855-41986874 Msa0600500:CDS 40.0%
AAGGCAATACCAGAGAAAAC+AGG - chr4_2:41986938-41986957 Msa0600500:CDS 40.0%
! ATCACCTTTCCTGTTTTCTC+TGG + chr4_2:41986950-41986969 None:intergenic 40.0%
AACAGGAAAGGTGATCATTG+TGG - chr4_2:41986955-41986974 Msa0600500:CDS 40.0%
AATGAACCATTTACCGACAC+TGG - chr4_2:41987001-41987020 Msa0600500:CDS 40.0%
ATGAACCATTTACCGACACT+GGG - chr4_2:41987002-41987021 Msa0600500:CDS 40.0%
GCATTCCCAGTCTAAATTCA+TGG - chr4_2:41987166-41987185 Msa0600500:CDS 40.0%
ATGGAAGATGACGAGTTTGT+TGG - chr4_2:41987185-41987204 Msa0600500:CDS 40.0%
TTCGTATGTGTTGTGTTGTG+TGG - chr4_2:41987234-41987253 Msa0600500:CDS 40.0%
! TTGTGTTGTGTGGCTTTACT+TGG - chr4_2:41987244-41987263 Msa0600500:CDS 40.0%
! CATGAATCATAGCTAGCTCT+AGG + chr4_2:41987336-41987355 None:intergenic 40.0%
AGCTAGCTATGATTCATGCA+TGG - chr4_2:41987338-41987357 Msa0600500:five_prime_UTR 40.0%
GCTAGCTATGATTCATGCAT+GGG - chr4_2:41987339-41987358 Msa0600500:five_prime_UTR 40.0%
CTAGCTATGATTCATGCATG+GGG - chr4_2:41987340-41987359 Msa0600500:five_prime_UTR 40.0%
TAGCTATGATTCATGCATGG+GGG - chr4_2:41987341-41987360 Msa0600500:five_prime_UTR 40.0%
GAAACCGGGGAAATTCTCTA+CGG - chr4_2:41986239-41986258 Msa0600500:CDS 45.0%
GCTTGACACGTGCATCAAAA+TGG - chr4_2:41986261-41986280 Msa0600500:CDS 45.0%
! AGTCTTTGGTTGATGTTGGC+GGG - chr4_2:41986555-41986574 Msa0600500:intron 45.0%
! TCAACGGCCCCTAATTTTGA+TGG - chr4_2:41986659-41986678 Msa0600500:CDS 45.0%
CAAACATGTCTCCTCCAACA+TGG + chr4_2:41986691-41986710 None:intergenic 45.0%
CTGCCATTCACCCAAAGATA+AGG + chr4_2:41986861-41986880 None:intergenic 45.0%
TATCTTTGGGTGAATGGCAG+TGG - chr4_2:41986861-41986880 Msa0600500:CDS 45.0%
GATCATGTATTGGACCCAGA+AGG - chr4_2:41986977-41986996 Msa0600500:CDS 45.0%
GTCAAATGCTATCCCAGTGT+CGG + chr4_2:41987017-41987036 None:intergenic 45.0%
!! GAATCATAGCTAGCTCTAGG+TGG + chr4_2:41987333-41987352 None:intergenic 45.0%
AGCTATGATTCATGCATGGG+GGG - chr4_2:41987342-41987361 Msa0600500:five_prime_UTR 45.0%
CTGCTATCTGATCTGCTGAT+GGG + chr4_2:41987379-41987398 None:intergenic 45.0%
TCTGCTATCTGATCTGCTGA+TGG + chr4_2:41987380-41987399 None:intergenic 45.0%
GAAACCGGGGAAATTCTCTA+CGG - chr4_2:41986239-41986258 Msa0600500:CDS 45.0%
GCTTGACACGTGCATCAAAA+TGG - chr4_2:41986261-41986280 Msa0600500:CDS 45.0%
! AGTCTTTGGTTGATGTTGGC+GGG - chr4_2:41986555-41986574 Msa0600500:intron 45.0%
! TCAACGGCCCCTAATTTTGA+TGG - chr4_2:41986659-41986678 Msa0600500:CDS 45.0%
CAAACATGTCTCCTCCAACA+TGG + chr4_2:41986691-41986710 None:intergenic 45.0%
CTGCCATTCACCCAAAGATA+AGG + chr4_2:41986861-41986880 None:intergenic 45.0%
TATCTTTGGGTGAATGGCAG+TGG - chr4_2:41986861-41986880 Msa0600500:CDS 45.0%
GATCATGTATTGGACCCAGA+AGG - chr4_2:41986977-41986996 Msa0600500:CDS 45.0%
GTCAAATGCTATCCCAGTGT+CGG + chr4_2:41987017-41987036 None:intergenic 45.0%
!! GAATCATAGCTAGCTCTAGG+TGG + chr4_2:41987333-41987352 None:intergenic 45.0%
AGCTATGATTCATGCATGGG+GGG - chr4_2:41987342-41987361 Msa0600500:five_prime_UTR 45.0%
CTGCTATCTGATCTGCTGAT+GGG + chr4_2:41987379-41987398 None:intergenic 45.0%
TCTGCTATCTGATCTGCTGA+TGG + chr4_2:41987380-41987399 None:intergenic 45.0%
!!! AATATAAGTAAATTTTAATA+TGG - chr4_2:41985906-41985925 Msa0600500:three_prime_UTR 5.0%
!! AATATAAAATTAAAGAAATT+GGG - chr4_2:41987523-41987542 Msa0600500:five_prime_UTR 5.0%
!!! AATATAAGTAAATTTTAATA+TGG - chr4_2:41985906-41985925 Msa0600500:three_prime_UTR 5.0%
!! AATATAAAATTAAAGAAATT+GGG - chr4_2:41987523-41987542 Msa0600500:five_prime_UTR 5.0%
TATTGACCAGGGTGTGAGCA+AGG - chr4_2:41985971-41985990 Msa0600500:three_prime_UTR 50.0%
AGTAGAGTGGAATCAGGGGA+AGG + chr4_2:41986164-41986183 None:intergenic 50.0%
CAAGCCGTAGAGAATTTCCC+CGG + chr4_2:41986246-41986265 None:intergenic 50.0%
TAGCGGTGCAAACCATACCT+TGG + chr4_2:41986481-41986500 None:intergenic 50.0%
CACCGCTAGAATTGTGTCGA+GGG - chr4_2:41986493-41986512 Msa0600500:intron 50.0%
AGCCCTCGACACAATTCTAG+CGG + chr4_2:41986498-41986517 None:intergenic 50.0%
! GTCTTTGGTTGATGTTGGCG+GGG - chr4_2:41986556-41986575 Msa0600500:intron 50.0%
! TCTTTGGTTGATGTTGGCGG+GGG - chr4_2:41986557-41986576 Msa0600500:intron 50.0%
GATGGTATCACCCATGTTGG+AGG - chr4_2:41986677-41986696 Msa0600500:CDS 50.0%
! GGCAGTGGATTCTTCATGAC+TGG - chr4_2:41986876-41986895 Msa0600500:CDS 50.0%
!! GCTATCCCAGTGTCGGTAAA+TGG + chr4_2:41987010-41987029 None:intergenic 50.0%
! ATGTTGCTTGCTCACAACGC+TGG - chr4_2:41987040-41987059 Msa0600500:CDS 50.0%
TGCTCTGCCATGCATCATTG+AGG - chr4_2:41987144-41987163 Msa0600500:CDS 50.0%
GGGAATGCCTCAATGATGCA+TGG + chr4_2:41987154-41987173 None:intergenic 50.0%
TATGATTCATGCATGGGGGG+AGG - chr4_2:41987345-41987364 Msa0600500:five_prime_UTR 50.0%
TATTGACCAGGGTGTGAGCA+AGG - chr4_2:41985971-41985990 Msa0600500:three_prime_UTR 50.0%
AGTAGAGTGGAATCAGGGGA+AGG + chr4_2:41986164-41986183 None:intergenic 50.0%
CAAGCCGTAGAGAATTTCCC+CGG + chr4_2:41986246-41986265 None:intergenic 50.0%
TAGCGGTGCAAACCATACCT+TGG + chr4_2:41986481-41986500 None:intergenic 50.0%
CACCGCTAGAATTGTGTCGA+GGG - chr4_2:41986493-41986512 Msa0600500:intron 50.0%
AGCCCTCGACACAATTCTAG+CGG + chr4_2:41986498-41986517 None:intergenic 50.0%
! GTCTTTGGTTGATGTTGGCG+GGG - chr4_2:41986556-41986575 Msa0600500:intron 50.0%
! TCTTTGGTTGATGTTGGCGG+GGG - chr4_2:41986557-41986576 Msa0600500:intron 50.0%
GATGGTATCACCCATGTTGG+AGG - chr4_2:41986677-41986696 Msa0600500:CDS 50.0%
! GGCAGTGGATTCTTCATGAC+TGG - chr4_2:41986876-41986895 Msa0600500:CDS 50.0%
!! GCTATCCCAGTGTCGGTAAA+TGG + chr4_2:41987010-41987029 None:intergenic 50.0%
! ATGTTGCTTGCTCACAACGC+TGG - chr4_2:41987040-41987059 Msa0600500:CDS 50.0%
TGCTCTGCCATGCATCATTG+AGG - chr4_2:41987144-41987163 Msa0600500:CDS 50.0%
GGGAATGCCTCAATGATGCA+TGG + chr4_2:41987154-41987173 None:intergenic 50.0%
TATGATTCATGCATGGGGGG+AGG - chr4_2:41987345-41987364 Msa0600500:five_prime_UTR 50.0%
CTTCTTCCTTGCTCACACCC+TGG + chr4_2:41985980-41985999 None:intergenic 55.0%
GCACCGCTAGAATTGTGTCG+AGG - chr4_2:41986492-41986511 Msa0600500:intron 55.0%
GTGTCGAGGGCTGTTATTGC+TGG - chr4_2:41986506-41986525 Msa0600500:intron 55.0%
! GTTGATGTTGGCGGGGGTAT+CGG - chr4_2:41986563-41986582 Msa0600500:CDS 55.0%
TTGCTTGCTCACAACGCTGG+TGG - chr4_2:41987043-41987062 Msa0600500:CDS 55.0%
CTTCTTCCTTGCTCACACCC+TGG + chr4_2:41985980-41985999 None:intergenic 55.0%
GCACCGCTAGAATTGTGTCG+AGG - chr4_2:41986492-41986511 Msa0600500:intron 55.0%
GTGTCGAGGGCTGTTATTGC+TGG - chr4_2:41986506-41986525 Msa0600500:intron 55.0%
! GTTGATGTTGGCGGGGGTAT+CGG - chr4_2:41986563-41986582 Msa0600500:CDS 55.0%
TTGCTTGCTCACAACGCTGG+TGG - chr4_2:41987043-41987062 Msa0600500:CDS 55.0%
GGGGCCGTTGAAACCACATG+AGG + chr4_2:41986650-41986669 None:intergenic 60.0%
! CATGCATGGGGGGAGGCTTT+TGG - chr4_2:41987352-41987371 Msa0600500:five_prime_UTR 60.0%
GGGGCCGTTGAAACCACATG+AGG + chr4_2:41986650-41986669 None:intergenic 60.0%
! CATGCATGGGGGGAGGCTTT+TGG - chr4_2:41987352-41987371 Msa0600500:five_prime_UTR 60.0%
!! GATGTTGGCGGGGGTATCGG+AGG - chr4_2:41986566-41986585 Msa0600500:CDS 65.0%
!! GATGTTGGCGGGGGTATCGG+AGG - chr4_2:41986566-41986585 Msa0600500:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 41985750 41987553 41985750 ID=Msa0600500;Name=Msa0600500
chr4_2 mRNA 41985750 41987553 41985750 ID=Msa0600500-mRNA-1;Parent=Msa0600500;Name=Msa0600500-mRNA-1;_AED=0.04;_eAED=0.04;_QI=288|1|1|1|1|1|2|373|335
chr4_2 exon 41985750 41986422 41985750 ID=Msa0600500-mRNA-1:exon:9146;Parent=Msa0600500-mRNA-1
chr4_2 exon 41986558 41987553 41986558 ID=Msa0600500-mRNA-1:exon:9145;Parent=Msa0600500-mRNA-1
chr4_2 five_prime_UTR 41987266 41987553 41987266 ID=Msa0600500-mRNA-1:five_prime_utr;Parent=Msa0600500-mRNA-1
chr4_2 CDS 41986558 41987265 41986558 ID=Msa0600500-mRNA-1:cds;Parent=Msa0600500-mRNA-1
chr4_2 CDS 41986123 41986422 41986123 ID=Msa0600500-mRNA-1:cds;Parent=Msa0600500-mRNA-1
chr4_2 three_prime_UTR 41985750 41986122 41985750 ID=Msa0600500-mRNA-1:three_prime_utr;Parent=Msa0600500-mRNA-1
Gene Sequence

>Msa0600500

ATGACACAATTCACAGACTCTTTTGCTCTAAAAGCTGTCGTGGAGCTACGCATAGCCGATATTATAGACCGTTATGGCAAACCACTATCCTTAACTCAAATTGTGCAGAATCTTGAAGATGCACCTTCCCCTGATTCCACTCTACTTTTAAGAGTAATGAGAGTCATGGTTCGTAGAAAGATTTTCAGTGCAGAAAAATCAGAAACCGGGGAAATTCTCTACGGCTTGACACGTGCATCAAAATGGATCCTACAAGACACAAAAATGACATTGGCACCAATGTTGTTGCTAGAGAATCACCCTTTTCATTTGAACCCTGCTAACTTTATTAGTGAAATTATAAAAGAAGGCACAACAAATGGCACTGCTTTCTTTAGGTGTCATGGTCATGAACAATTTGAAATGACGGGGTTGGACTCGAAATACAATGACTTGTTCAACCAAGGTATGGTTTGCACCGCTAGAATTGTGTCGAGGGCTGTTATTGCTGGATACAAAGATGGGTTTAACCAAATTAAGTCTTTGGTTGATGTTGGCGGGGGTATCGGAGGATCTCTCTCCGAGATTGTTAGAGCTTATCCTCACATTCAAGCTATTAACTTTGATTTGCCTCATGTGGTTTCAACGGCCCCTAATTTTGATGGTATCACCCATGTTGGAGGAGACATGTTTGTGTCAGTTCCTAGTGCTGATGCTATTTACATGAAGTGGATTCTTCATGACTGGAGCGACGACCATTGCATAAAGATATTGAAGAATTGTAGAAAGGCAATACCAGAGAAAACAGGAAAGGTGATCATTGTGGATCATGTATTGGACCCAGAAGGAAATGAACCATTTACCGACACTGGGATAGCATTTGACATGATGTTGCTTGCTCACAACGCTGGTGGTAAAGAAAGAACTGAAGAGAACTGGAAATACTTATTCAACGAGACAGGATTCCCTCGTTACAACATCATCAAAATCAATGCTCTGCCATGCATCATTGAGGCATTCCCAGTCTAA
Protein sequence

>Msa0600500

MTQFTDSFALKAVVELRIADIIDRYGKPLSLTQIVQNLEDAPSPDSTLLLRVMRVMVRRKIFSAEKSETGEILYGLTRASKWILQDTKMTLAPMLLLENHPFHLNPANFISEIIKEGTTNGTAFFRCHGHEQFEMTGLDSKYNDLFNQGMVCTARIVSRAVIAGYKDGFNQIKSLVDVGGGIGGSLSEIVRAYPHIQAINFDLPHVVSTAPNFDGITHVGGDMFVSVPSADAIYMKWILHDWSDDHCIKILKNCRKAIPEKTGKVIIVDHVLDPEGNEPFTDTGIAFDMMLLAHNAGGKERTEENWKYLFNETGFPRYNIIKINALPCIIEAFPV*