AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1169590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1169590 MtrunA17_Chr7g0263551 80.743 296 8 3 1 292 1 251 3.64e-167 463
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1169590 AT2G37240.1 58.148 270 58 4 31 292 26 248 5.21e-99 291

Find 79 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAAGATATCTTCAATTTC+TGG 0.106966 7_4:-62623437 None:intergenic
GCTGAGCAAACAAAATTTAA+AGG 0.173089 7_4:+62622540 Msa1169590:CDS
GAGGCCTTACAATTTGTTTC+TGG 0.198475 7_4:+62622688 Msa1169590:CDS
TCTTTCCACAAGTCAGAAAT+TGG 0.241459 7_4:-62621679 None:intergenic
CCATGGAAGAACGTGGTCTT+AGG 0.246678 7_4:-62620895 None:intergenic
CGTTGCTTTAAAGTCTTCTT+AGG 0.250203 7_4:+62622182 Msa1169590:CDS
AGCAGAAAACATTACCTTCT+TGG 0.265603 7_4:-62622019 None:intergenic
GTCTTCTTAGGAGACGATTT+TGG 0.288587 7_4:+62622194 Msa1169590:CDS
AGTGGATTATTAGAATATAT+TGG 0.314832 7_4:-62621019 None:intergenic
GCTCTACCAACAGGATATAA+TGG 0.342546 7_4:+62622379 Msa1169590:intron
TACCTCAAGTTCACTGGAAT+TGG 0.348966 7_4:+62621624 Msa1169590:CDS
TTTCTGACTTGTGGAAAGAT+AGG 0.355719 7_4:+62621683 Msa1169590:CDS
TTAAGATATCTTCAATTTCT+GGG 0.369252 7_4:-62623436 None:intergenic
GTGTTTGATTTGGAAGGAAA+TGG 0.371027 7_4:+62621652 Msa1169590:CDS
TGTTTGCTCAGCAAAGGCTT+TGG 0.376817 7_4:-62622529 None:intergenic
CCCTTTGCTTCTCCTTCTGC+AGG 0.378932 7_4:+62621079 Msa1169590:CDS
TTGCATTTGCTCGTCACTTT+GGG 0.383103 7_4:+62621716 Msa1169590:CDS
ATTTATTTGTAAGTTGGTTA+AGG 0.384818 7_4:-62620952 None:intergenic
TAAGATAATAGAATTGTATA+TGG 0.387939 7_4:+62622881 Msa1169590:CDS
AGGAGTTGAGTCTCCAGTGC+TGG 0.394517 7_4:+62621594 Msa1169590:intron
GGGTATAGTGGTGGTGGTGG+TGG 0.394684 7_4:-62621059 None:intergenic
ATTGGTGAAAGTGTTTGATT+TGG 0.396812 7_4:+62621642 Msa1169590:CDS
CATACACACCTTGTGAATAT+AGG 0.399241 7_4:-62623289 None:intergenic
CAAGGAGGAATTATAGTTGC+AGG 0.415807 7_4:+62623246 Msa1169590:CDS
TGTTTGATTTGGAAGGAAAT+GGG 0.420452 7_4:+62621653 Msa1169590:CDS
GCCTCATATGACGATTGAAC+GGG 0.426222 7_4:-62622670 None:intergenic
GGTGTAGCACTTGTATTGAT+TGG 0.434510 7_4:+62622410 Msa1169590:CDS
GCTTACATTTATTTGTAAGT+TGG 0.444299 7_4:-62620958 None:intergenic
GGATTCCAATTTCTGACTTG+TGG 0.450614 7_4:+62621674 Msa1169590:CDS
TTGGAAGCTTTCATTCGAAA+AGG 0.452486 7_4:+62622920 Msa1169590:CDS
TGGAAGGTTATCGACAAGAT+TGG 0.474176 7_4:+62622901 Msa1169590:CDS
AACTCCAGAAACAAATTGTA+AGG 0.478715 7_4:-62622692 None:intergenic
TGTGATATGAGCTTGTCATT+TGG 0.486792 7_4:-62623598 None:intergenic
AGGAGAAGCAAAGGGTATAG+TGG 0.493170 7_4:-62621071 None:intergenic
GTTGCATTTGCTCGTCACTT+TGG 0.495048 7_4:+62621715 Msa1169590:CDS
CAATCTGCAGTAAATTGTGT+TGG 0.497828 7_4:+62623675 Msa1169590:three_prime_UTR
AGCAAAGGGTATAGTGGTGG+TGG 0.503365 7_4:-62621065 None:intergenic
CCCCGTTCAATCGTCATATG+AGG 0.503849 7_4:+62622669 Msa1169590:CDS
CTTGTCATTTGGCAAATGGC+TGG 0.508063 7_4:-62623587 None:intergenic
CACCAATTCCAGTGAACTTG+AGG 0.509684 7_4:-62621626 None:intergenic
GGAATTATAGTTGCAGGTCC+TGG 0.514996 7_4:+62623252 Msa1169590:CDS
TGAGCTTGTCATTTGGCAAA+TGG 0.516874 7_4:-62623591 None:intergenic
AAAGGGTATAGTGGTGGTGG+TGG 0.516970 7_4:-62621062 None:intergenic
TGAGGATACCTCAAGTTCAC+TGG 0.525231 7_4:+62621618 Msa1169590:CDS
CATGGAAGAACGTGGTCTTA+GGG 0.525393 7_4:-62620894 None:intergenic
GGCTGTTTCTCTTACTTTGG+GGG 0.526708 7_4:-62622728 None:intergenic
GTGAAAGTGTTTGATTTGGA+AGG 0.528775 7_4:+62621646 Msa1169590:CDS
TGGACCTGGCAACATTGATC+AGG 0.530445 7_4:+62622430 Msa1169590:CDS
ATAGTTGCAGGTCCTGGTAA+AGG 0.534747 7_4:+62623258 Msa1169590:CDS
CAGGATATAATGGATGCGTC+TGG 0.535386 7_4:+62622389 Msa1169590:intron
GAGGTATCCTCACCCAGCAC+TGG 0.539297 7_4:-62621607 None:intergenic
GCCTGCAGAAGGAGAAGCAA+AGG 0.542339 7_4:-62621080 None:intergenic
CATGAGTAGGACAAAGAAGC+AGG 0.545391 7_4:+62623407 Msa1169590:intron
CCTAAGACCACGTTCTTCCA+TGG 0.549966 7_4:+62620895 Msa1169590:exon
GGAGTTGAGTCTCCAGTGCT+GGG 0.551780 7_4:+62621595 Msa1169590:intron
GATTATTAGAATATATTGGA+AGG 0.557430 7_4:-62621015 None:intergenic
TGTACCTGATCAATGTTGCC+AGG 0.557725 7_4:-62622434 None:intergenic
ATAATAGAATTGTATATGGA+AGG 0.563362 7_4:+62622885 Msa1169590:CDS
AGACAAAACTTGCCTGCAGA+AGG 0.565291 7_4:-62621091 None:intergenic
TGAGTCTCCAGTGCTGGGTG+AGG 0.575533 7_4:+62621600 Msa1169590:CDS
AAGGATACTGTTAGCAGAGG+AGG 0.583125 7_4:+62622939 Msa1169590:CDS
CCTGCAGAAGGAGAAGCAAA+GGG 0.584870 7_4:-62621079 None:intergenic
TAGGAGATGTTACCTTTACC+AGG 0.585319 7_4:-62623270 None:intergenic
GCTCGTGAAGAAAGAAGAGA+TGG 0.588367 7_4:+62623468 Msa1169590:exon
TGATTATCTTGCATCCAAGA+AGG 0.588890 7_4:+62622005 Msa1169590:CDS
GATACATGATGCAGTTTGAG+TGG 0.593247 7_4:-62621037 None:intergenic
GGCCTCATATGACGATTGAA+CGG 0.593309 7_4:-62622671 None:intergenic
AGAAGCAAAGGGTATAGTGG+TGG 0.594832 7_4:-62621068 None:intergenic
TGACACTGTGGCAGGCAACA+AGG 0.606308 7_4:+62623228 Msa1169590:intron
ATACTGTTAGCAGAGGAGGC+TGG 0.626834 7_4:+62622943 Msa1169590:CDS
AAGCGTTGTAGAGCACGCCA+TGG 0.635852 7_4:-62620912 None:intergenic
GCACTTGTATTGATTGGACC+TGG 0.646245 7_4:+62622416 Msa1169590:CDS
GAGCAAACAAAATTTAAAGG+AGG 0.650865 7_4:+62622543 Msa1169590:CDS
GAAAAGGATACTGTTAGCAG+AGG 0.658204 7_4:+62622936 Msa1169590:CDS
TGTACATGCTCTACGATGAG+AGG 0.660110 7_4:-62623493 None:intergenic
CCTCATATGACGATTGAACG+GGG 0.682252 7_4:-62622669 None:intergenic
TAACATCTCCTATATTCACA+AGG 0.715027 7_4:+62623281 Msa1169590:CDS
CACTGTGGCAGGCAACAAGG+AGG 0.721602 7_4:+62623231 Msa1169590:intron
GAGCACGCCATGGAAGAACG+TGG 0.728516 7_4:-62620902 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTATTTTCTTAAATTATAAT+CGG - chr7_4:62621318-62621337 None:intergenic 10.0%
!! TTACTTATGAATAAAAAATT+AGG - chr7_4:62622752-62622771 None:intergenic 10.0%
!! TATCAATAATATTAGTTAGA+TGG + chr7_4:62621397-62621416 Msa1169590:intron 15.0%
!! ATCAATAATATTAGTTAGAT+GGG + chr7_4:62621398-62621417 Msa1169590:intron 15.0%
!! AAACAAATATTAAACGAAAA+GGG - chr7_4:62622310-62622329 None:intergenic 15.0%
!! AAAACAAATATTAAACGAAA+AGG - chr7_4:62622311-62622330 None:intergenic 15.0%
!!! AGTTTTTGTTAAATATACAA+AGG + chr7_4:62622818-62622837 Msa1169590:intron 15.0%
!! TAAGATAATAGAATTGTATA+TGG + chr7_4:62622881-62622900 Msa1169590:CDS 15.0%
!! ATTCTATAAAATTGAGTATA+GGG - chr7_4:62623320-62623339 None:intergenic 15.0%
!! TATTCTATAAAATTGAGTAT+AGG - chr7_4:62623321-62623340 None:intergenic 15.0%
!!! CAATTTTATAGAATATATCT+TGG + chr7_4:62623326-62623345 Msa1169590:intron 15.0%
!!! ATTTATTTGTAAGTTGGTTA+AGG - chr7_4:62620955-62620974 None:intergenic 20.0%
!! GATTATTAGAATATATTGGA+AGG - chr7_4:62621018-62621037 None:intergenic 20.0%
!!! AGTGGATTATTAGAATATAT+TGG - chr7_4:62621022-62621041 None:intergenic 20.0%
!! AATACAAGTGATTAAATATG+TGG + chr7_4:62621333-62621352 Msa1169590:intron 20.0%
!!! AAAGAAAAAGAAAGTATGAT+AGG - chr7_4:62621458-62621477 None:intergenic 20.0%
!! TTCATTATTATACAGAAATG+AGG - chr7_4:62621506-62621525 None:intergenic 20.0%
!!! CTAGAATCAAATGATTTTTT+TGG - chr7_4:62622110-62622129 None:intergenic 20.0%
!! CTAATACCTATATTTAATAC+AGG + chr7_4:62622506-62622525 Msa1169590:intron 20.0%
!! AGTAATAAATAAAATCCATG+CGG + chr7_4:62622767-62622786 Msa1169590:intron 20.0%
!! ATAATAGAATTGTATATGGA+AGG + chr7_4:62622885-62622904 Msa1169590:CDS 20.0%
!! TACATTGAATCTATAATTAG+AGG + chr7_4:62623096-62623115 Msa1169590:intron 20.0%
!! TGTCAAGTTCATAATATTAA+AGG - chr7_4:62623213-62623232 None:intergenic 20.0%
!! AATATATCTTGGAATATTCA+TGG + chr7_4:62623337-62623356 Msa1169590:intron 20.0%
!! TTAAGATATCTTCAATTTCT+GGG - chr7_4:62623439-62623458 None:intergenic 20.0%
!!! TTTAAGATATCTTCAATTTC+TGG - chr7_4:62623440-62623459 None:intergenic 20.0%
! GCTTACATTTATTTGTAAGT+TGG - chr7_4:62620961-62620980 None:intergenic 25.0%
! TGTTTAGATTAACAGTGAAT+AGG + chr7_4:62621794-62621813 Msa1169590:intron 25.0%
! GTTTAGATTAACAGTGAATA+GGG + chr7_4:62621795-62621814 Msa1169590:intron 25.0%
! TTGAAGCTTCAATAAAATCA+TGG + chr7_4:62621861-62621880 Msa1169590:intron 25.0%
!! TAGTGAATTTTGTCAAATCA+TGG - chr7_4:62621892-62621911 None:intergenic 25.0%
!! ATCTTACACAACTCAATTTT+AGG - chr7_4:62621938-62621957 None:intergenic 25.0%
! AAAACAGCAATCTTAATATG+AGG - chr7_4:62622143-62622162 None:intergenic 25.0%
!!! ATTAAGATTGCTGTTTTTCT+TGG + chr7_4:62622146-62622165 Msa1169590:intron 25.0%
! TGCATTTCTATTCAAAATGT+TGG + chr7_4:62622260-62622279 Msa1169590:intron 25.0%
!! GATGTCTTCTTTATCATTTT+TGG + chr7_4:62623044-62623063 Msa1169590:intron 25.0%
!! TTGGACTTCTAAAGAAAAAT+TGG + chr7_4:62623694-62623713 Msa1169590:three_prime_UTR 25.0%
!!! GTTTTGATTAAGTGAAAGTG+TGG - chr7_4:62620996-62621015 None:intergenic 30.0%
GTGCAATAAAAATAGACAAG+TGG - chr7_4:62621149-62621168 None:intergenic 30.0%
TTATGTTAGTGCTTCATAGA+TGG - chr7_4:62621274-62621293 None:intergenic 30.0%
TCACACATTGAAACAATTGT+TGG - chr7_4:62621566-62621585 None:intergenic 30.0%
!! ATTGGTGAAAGTGTTTGATT+TGG + chr7_4:62621642-62621661 Msa1169590:CDS 30.0%
!! TGTTTGATTTGGAAGGAAAT+GGG + chr7_4:62621653-62621672 Msa1169590:CDS 30.0%
! AGTTTTTGCCAAAATTGTTG+TGG - chr7_4:62621836-62621855 None:intergenic 30.0%
TTAACAATTGCATATGTTGC+AGG + chr7_4:62621959-62621978 Msa1169590:intron 30.0%
AGCATAATCAAAACTAGAGA+AGG - chr7_4:62622362-62622381 None:intergenic 30.0%
CTTTGGCCTGTATTAAATAT+AGG - chr7_4:62622515-62622534 None:intergenic 30.0%
!! AAATTTTGTTTGCTCAGCAA+AGG - chr7_4:62622538-62622557 None:intergenic 30.0%
GCTGAGCAAACAAAATTTAA+AGG + chr7_4:62622540-62622559 Msa1169590:CDS 30.0%
GAGCAAACAAAATTTAAAGG+AGG + chr7_4:62622543-62622562 Msa1169590:CDS 30.0%
AACTCCAGAAACAAATTGTA+AGG - chr7_4:62622695-62622714 None:intergenic 30.0%
TGCAACAGCTAAAATTAACA+CGG - chr7_4:62622847-62622866 None:intergenic 30.0%
ATTATCCATACCACTCTTAA+AGG + chr7_4:62623012-62623031 Msa1169590:intron 30.0%
ATATTATGAACTTGACACTG+TGG + chr7_4:62623216-62623235 Msa1169590:intron 30.0%
TAACATCTCCTATATTCACA+AGG + chr7_4:62623281-62623300 Msa1169590:CDS 30.0%
TGTAAGTTGTGCAAGATTGT+TGG - chr7_4:62621249-62621268 None:intergenic 35.0%
TATAATCGGTATCTACGTGT+CGG - chr7_4:62621304-62621323 None:intergenic 35.0%
!! CAATTGTTGGCTCTCAAAAT+AGG - chr7_4:62621553-62621572 None:intergenic 35.0%
TTCAATGTGTGAATATGACC+AGG + chr7_4:62621574-62621593 Msa1169590:intron 35.0%
!! GTGAAAGTGTTTGATTTGGA+AGG + chr7_4:62621646-62621665 Msa1169590:CDS 35.0%
!! GTGTTTGATTTGGAAGGAAA+TGG + chr7_4:62621652-62621671 Msa1169590:CDS 35.0%
TCTTTCCACAAGTCAGAAAT+TGG - chr7_4:62621682-62621701 None:intergenic 35.0%
! TTTCTGACTTGTGGAAAGAT+AGG + chr7_4:62621683-62621702 Msa1169590:CDS 35.0%
CATGCACACATCTAAGAAAA+GGG - chr7_4:62621776-62621795 None:intergenic 35.0%
ACATGCACACATCTAAGAAA+AGG - chr7_4:62621777-62621796 None:intergenic 35.0%
! CAAGATAATCAGCTCTTTTG+CGG - chr7_4:62621996-62622015 None:intergenic 35.0%
TGATTATCTTGCATCCAAGA+AGG + chr7_4:62622005-62622024 Msa1169590:CDS 35.0%
AGCAGAAAACATTACCTTCT+TGG - chr7_4:62622022-62622041 None:intergenic 35.0%
!! CGTTGCTTTAAAGTCTTCTT+AGG + chr7_4:62622182-62622201 Msa1169590:CDS 35.0%
AAAAAACCACGAGTCATGTT+TGG - chr7_4:62622287-62622306 None:intergenic 35.0%
TTTGATTATGCTCTACCAAC+AGG + chr7_4:62622370-62622389 Msa1169590:intron 35.0%
!! TTCCAGCATTCTAAGATGTT+AGG - chr7_4:62622478-62622497 None:intergenic 35.0%
TACATTACAGAAACTAGCAC+AGG - chr7_4:62622590-62622609 None:intergenic 35.0%
!! TCTGCATAGATTTCTAGAAC+AGG - chr7_4:62622649-62622668 None:intergenic 35.0%
!! TAGGCTGTTTCTCTTACTTT+GGG - chr7_4:62622733-62622752 None:intergenic 35.0%
!! TTAGGCTGTTTCTCTTACTT+TGG - chr7_4:62622734-62622753 None:intergenic 35.0%
CAACAGCTAAAATTAACACG+GGG - chr7_4:62622845-62622864 None:intergenic 35.0%
GCAACAGCTAAAATTAACAC+GGG - chr7_4:62622846-62622865 None:intergenic 35.0%
!!! AATTTTAGCTGTTGCACTAC+AGG + chr7_4:62622851-62622870 Msa1169590:intron 35.0%
TTGGAAGCTTTCATTCGAAA+AGG + chr7_4:62622920-62622939 Msa1169590:CDS 35.0%
GATAGTGTAAGACTTCTTGT+AGG - chr7_4:62622982-62623001 None:intergenic 35.0%
TGATAAAGAAGACATCACAG+AGG - chr7_4:62623040-62623059 None:intergenic 35.0%
TGATAGAAGAAAGCTCTCTT+TGG + chr7_4:62623143-62623162 Msa1169590:intron 35.0%
CATACACACCTTGTGAATAT+AGG - chr7_4:62623292-62623311 None:intergenic 35.0%
!! TGAACAGTAGCTTTTTCTTG+AGG + chr7_4:62623530-62623549 Msa1169590:three_prime_UTR 35.0%
TGTGATATGAGCTTGTCATT+TGG - chr7_4:62623601-62623620 None:intergenic 35.0%
CAATCTGCAGTAAATTGTGT+TGG + chr7_4:62623675-62623694 Msa1169590:three_prime_UTR 35.0%
GATACATGATGCAGTTTGAG+TGG - chr7_4:62621040-62621059 None:intergenic 40.0%
CAAGTGGTTGAGAATACAAG+AGG - chr7_4:62621133-62621152 None:intergenic 40.0%
!! ACGTCTTCACTCTAAAGTCT+CGG + chr7_4:62621371-62621390 Msa1169590:intron 40.0%
AATAGGCAAGTGTTCAACAG+AGG - chr7_4:62621536-62621555 None:intergenic 40.0%
TACCTCAAGTTCACTGGAAT+TGG + chr7_4:62621624-62621643 Msa1169590:CDS 40.0%
! GGATTCCAATTTCTGACTTG+TGG + chr7_4:62621674-62621693 Msa1169590:CDS 40.0%
! TTGCATTTGCTCGTCACTTT+GGG + chr7_4:62621716-62621735 Msa1169590:CDS 40.0%
CAGTGAATAGGGAAGAATCA+CGG + chr7_4:62621806-62621825 Msa1169590:intron 40.0%
TTAGGAGCTAAGTGCATGTT+TGG - chr7_4:62621920-62621939 None:intergenic 40.0%
! GTCTTCTTAGGAGACGATTT+TGG + chr7_4:62622194-62622213 Msa1169590:CDS 40.0%
!!! TTAGGAGACGATTTTGGTTC+TGG + chr7_4:62622200-62622219 Msa1169590:CDS 40.0%
GCTCTACCAACAGGATATAA+TGG + chr7_4:62622379-62622398 Msa1169590:intron 40.0%
ACGCATCCATTATATCCTGT+TGG - chr7_4:62622388-62622407 None:intergenic 40.0%
! GGTGTAGCACTTGTATTGAT+TGG + chr7_4:62622410-62622429 Msa1169590:CDS 40.0%
CTCCTAACATCTTAGAATGC+TGG + chr7_4:62622473-62622492 Msa1169590:intron 40.0%
ATCAGCACTTTAACAGAACC+TGG + chr7_4:62622620-62622639 Msa1169590:intron 40.0%
!! GATTTCTAGAACAGGTAACC+AGG - chr7_4:62622641-62622660 None:intergenic 40.0%
! GAGGCCTTACAATTTGTTTC+TGG + chr7_4:62622688-62622707 Msa1169590:CDS 40.0%
! TCTTACTTTGGGGGTAAATG+TGG - chr7_4:62622722-62622741 None:intergenic 40.0%
!! AGGCTGTTTCTCTTACTTTG+GGG - chr7_4:62622732-62622751 None:intergenic 40.0%
TGGAAGGTTATCGACAAGAT+TGG + chr7_4:62622901-62622920 Msa1169590:CDS 40.0%
GAAAAGGATACTGTTAGCAG+AGG + chr7_4:62622936-62622955 Msa1169590:CDS 40.0%
! AGGATCCTTTAAGAGTGGTA+TGG - chr7_4:62623020-62623039 None:intergenic 40.0%
CTTTCTTCTATCAGCAAGCA+AGG - chr7_4:62623136-62623155 None:intergenic 40.0%
CAAGGAGGAATTATAGTTGC+AGG + chr7_4:62623246-62623265 Msa1169590:CDS 40.0%
TAGGAGATGTTACCTTTACC+AGG - chr7_4:62623273-62623292 None:intergenic 40.0%
! TGAGCTTGTCATTTGGCAAA+TGG - chr7_4:62623594-62623613 None:intergenic 40.0%
! CATGGAAGAACGTGGTCTTA+GGG - chr7_4:62620897-62620916 None:intergenic 45.0%
! AGAAGCAAAGGGTATAGTGG+TGG - chr7_4:62621071-62621090 None:intergenic 45.0%
! AGGAGAAGCAAAGGGTATAG+TGG - chr7_4:62621074-62621093 None:intergenic 45.0%
AGACAAAACTTGCCTGCAGA+AGG - chr7_4:62621094-62621113 None:intergenic 45.0%
TGAGGATACCTCAAGTTCAC+TGG + chr7_4:62621618-62621637 Msa1169590:CDS 45.0%
CACCAATTCCAGTGAACTTG+AGG - chr7_4:62621629-62621648 None:intergenic 45.0%
GTTGCATTTGCTCGTCACTT+TGG + chr7_4:62621715-62621734 Msa1169590:CDS 45.0%
! ACGGTGAGCCACAACAATTT+TGG + chr7_4:62621825-62621844 Msa1169590:intron 45.0%
!!! CGATTTTGGTTCTGGACTTC+TGG + chr7_4:62622208-62622227 Msa1169590:CDS 45.0%
!! CAGGATATAATGGATGCGTC+TGG + chr7_4:62622389-62622408 Msa1169590:intron 45.0%
!! GCACTTGTATTGATTGGACC+TGG + chr7_4:62622416-62622435 Msa1169590:CDS 45.0%
TGTACCTGATCAATGTTGCC+AGG - chr7_4:62622437-62622456 None:intergenic 45.0%
GGCAACATTGATCAGGTACA+CGG + chr7_4:62622437-62622456 Msa1169590:intron 45.0%
GCAACATTGATCAGGTACAC+GGG + chr7_4:62622438-62622457 Msa1169590:intron 45.0%
TGTTTGCTCAGCAAAGGCTT+TGG - chr7_4:62622532-62622551 None:intergenic 45.0%
CCTCATATGACGATTGAACG+GGG - chr7_4:62622672-62622691 None:intergenic 45.0%
GCCTCATATGACGATTGAAC+GGG - chr7_4:62622673-62622692 None:intergenic 45.0%
GGCCTCATATGACGATTGAA+CGG - chr7_4:62622674-62622693 None:intergenic 45.0%
!! GGCTGTTTCTCTTACTTTGG+GGG - chr7_4:62622731-62622750 None:intergenic 45.0%
AAGGATACTGTTAGCAGAGG+AGG + chr7_4:62622939-62622958 Msa1169590:CDS 45.0%
! CACAGAGGATCCTTTAAGAG+TGG - chr7_4:62623025-62623044 None:intergenic 45.0%
TATGAACTTGACACTGTGGC+AGG + chr7_4:62623220-62623239 Msa1169590:intron 45.0%
GGAATTATAGTTGCAGGTCC+TGG + chr7_4:62623252-62623271 Msa1169590:CDS 45.0%
ATAGTTGCAGGTCCTGGTAA+AGG + chr7_4:62623258-62623277 Msa1169590:CDS 45.0%
TCAAACGTGCTCACATGAGT+AGG + chr7_4:62623394-62623413 Msa1169590:intron 45.0%
CATGAGTAGGACAAAGAAGC+AGG + chr7_4:62623407-62623426 Msa1169590:intron 45.0%
GCTCGTGAAGAAAGAAGAGA+TGG + chr7_4:62623468-62623487 Msa1169590:exon 45.0%
TGTACATGCTCTACGATGAG+AGG - chr7_4:62623496-62623515 None:intergenic 45.0%
! CTTGTCATTTGGCAAATGGC+TGG - chr7_4:62623590-62623609 None:intergenic 45.0%
CCATGGAAGAACGTGGTCTT+AGG - chr7_4:62620898-62620917 None:intergenic 50.0%
CCTAAGACCACGTTCTTCCA+TGG + chr7_4:62620895-62620914 Msa1169590:exon 50.0%
!! AAAGGGTATAGTGGTGGTGG+TGG - chr7_4:62621065-62621084 None:intergenic 50.0%
! AGCAAAGGGTATAGTGGTGG+TGG - chr7_4:62621068-62621087 None:intergenic 50.0%
CCTGCAGAAGGAGAAGCAAA+GGG - chr7_4:62621082-62621101 None:intergenic 50.0%
GTTGGTCCAAACATGACTCG+TGG + chr7_4:62622278-62622297 Msa1169590:intron 50.0%
TGGACCTGGCAACATTGATC+AGG + chr7_4:62622430-62622449 Msa1169590:CDS 50.0%
CCCCGTTCAATCGTCATATG+AGG + chr7_4:62622669-62622688 Msa1169590:CDS 50.0%
TTAGCTGTTGCACTACAGGC+AGG + chr7_4:62622855-62622874 Msa1169590:intron 50.0%
ATACTGTTAGCAGAGGAGGC+TGG + chr7_4:62622943-62622962 Msa1169590:CDS 50.0%
! AAGCGTTGTAGAGCACGCCA+TGG - chr7_4:62620915-62620934 None:intergenic 55.0%
CCCTTTGCTTCTCCTTCTGC+AGG + chr7_4:62621079-62621098 Msa1169590:CDS 55.0%
GCCTGCAGAAGGAGAAGCAA+AGG - chr7_4:62621083-62621102 None:intergenic 55.0%
! AGCACTGGAGACTCAACTCC+TGG - chr7_4:62621595-62621614 None:intergenic 55.0%
AGGAGTTGAGTCTCCAGTGC+TGG + chr7_4:62621594-62621613 Msa1169590:intron 55.0%
GGAGTTGAGTCTCCAGTGCT+GGG + chr7_4:62621595-62621614 Msa1169590:intron 55.0%
TGACACTGTGGCAGGCAACA+AGG + chr7_4:62623228-62623247 Msa1169590:intron 55.0%
GAGCACGCCATGGAAGAACG+TGG - chr7_4:62620905-62620924 None:intergenic 60.0%
!! GGGTATAGTGGTGGTGGTGG+TGG - chr7_4:62621062-62621081 None:intergenic 60.0%
! TGAGTCTCCAGTGCTGGGTG+AGG + chr7_4:62621600-62621619 Msa1169590:CDS 60.0%
! GAGGTATCCTCACCCAGCAC+TGG - chr7_4:62621610-62621629 None:intergenic 60.0%
GCACACATCACTCAGCCGCA+TGG - chr7_4:62622785-62622804 None:intergenic 60.0%
CACTGTGGCAGGCAACAAGG+AGG + chr7_4:62623231-62623250 Msa1169590:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 62620848 62623767 62620848 ID=Msa1169590;Name=Msa1169590
chr7_4 mRNA 62620848 62623767 62620848 ID=Msa1169590-mRNA-1;Parent=Msa1169590;Name=Msa1169590-mRNA-1;_AED=0.08;_eAED=0.08;_QI=66|0.66|0.8|1|1|1|10|292|292
chr7_4 exon 62620848 62621100 62620848 ID=Msa1169590-mRNA-1:exon:19856;Parent=Msa1169590-mRNA-1
chr7_4 exon 62621596 62621737 62621596 ID=Msa1169590-mRNA-1:exon:19857;Parent=Msa1169590-mRNA-1
chr7_4 exon 62621981 62622026 62621981 ID=Msa1169590-mRNA-1:exon:19858;Parent=Msa1169590-mRNA-1
chr7_4 exon 62622152 62622277 62622152 ID=Msa1169590-mRNA-1:exon:19859;Parent=Msa1169590-mRNA-1
chr7_4 exon 62622392 62622451 62622392 ID=Msa1169590-mRNA-1:exon:19860;Parent=Msa1169590-mRNA-1
chr7_4 exon 62622528 62622564 62622528 ID=Msa1169590-mRNA-1:exon:19861;Parent=Msa1169590-mRNA-1
chr7_4 exon 62622668 62622735 62622668 ID=Msa1169590-mRNA-1:exon:19862;Parent=Msa1169590-mRNA-1
chr7_4 exon 62622873 62622964 62622873 ID=Msa1169590-mRNA-1:exon:19863;Parent=Msa1169590-mRNA-1
chr7_4 exon 62623242 62623302 62623242 ID=Msa1169590-mRNA-1:exon:19864;Parent=Msa1169590-mRNA-1
chr7_4 exon 62623416 62623767 62623416 ID=Msa1169590-mRNA-1:exon:19865;Parent=Msa1169590-mRNA-1
chr7_4 five_prime_UTR 62620848 62620913 62620848 ID=Msa1169590-mRNA-1:five_prime_utr;Parent=Msa1169590-mRNA-1
chr7_4 CDS 62620914 62621100 62620914 ID=Msa1169590-mRNA-1:cds;Parent=Msa1169590-mRNA-1
chr7_4 CDS 62621596 62621737 62621596 ID=Msa1169590-mRNA-1:cds;Parent=Msa1169590-mRNA-1
chr7_4 CDS 62621981 62622026 62621981 ID=Msa1169590-mRNA-1:cds;Parent=Msa1169590-mRNA-1
chr7_4 CDS 62622152 62622277 62622152 ID=Msa1169590-mRNA-1:cds;Parent=Msa1169590-mRNA-1
chr7_4 CDS 62622392 62622451 62622392 ID=Msa1169590-mRNA-1:cds;Parent=Msa1169590-mRNA-1
chr7_4 CDS 62622528 62622564 62622528 ID=Msa1169590-mRNA-1:cds;Parent=Msa1169590-mRNA-1
chr7_4 CDS 62622668 62622735 62622668 ID=Msa1169590-mRNA-1:cds;Parent=Msa1169590-mRNA-1
chr7_4 CDS 62622873 62622964 62622873 ID=Msa1169590-mRNA-1:cds;Parent=Msa1169590-mRNA-1
chr7_4 CDS 62623242 62623302 62623242 ID=Msa1169590-mRNA-1:cds;Parent=Msa1169590-mRNA-1
chr7_4 CDS 62623416 62623475 62623416 ID=Msa1169590-mRNA-1:cds;Parent=Msa1169590-mRNA-1
chr7_4 three_prime_UTR 62623476 62623767 62623476 ID=Msa1169590-mRNA-1:three_prime_utr;Parent=Msa1169590-mRNA-1
Gene Sequence

>Msa1169590

ATGGCGTGCTCTACAACGCTTTTGTCGAATTCTTTTCACCTTAACCAACTTACAAATAAATGTAAGCTACATGTATATTCCACACTTTCACTTAATCAAAACCTTCCAATATATTCTAATAATCCACTCAAACTGCATCATGTATCCACCACCACCACCACTATACCCTTTGCTTCTCCTTCTGCAGGAGTTGAGTCTCCAGTGCTGGGTGAGGATACCTCAAGTTCACTGGAATTGGTGAAAGTGTTTGATTTGGAAGGAAATGGGATTCCAATTTCTGACTTGTGGAAAGATAGGAAAGCAGTTGTTGCATTTGCTCGTCACTTTGGGTGTGTGCTTTGCCGCAAAAGAGCTGATTATCTTGCATCCAAGAAGATTGCTGTTTTTCTTGGAAAAACATTTGAACGTTGCTTTAAAGTCTTCTTAGGAGACGATTTTGGTTCTGGACTTCTGGTTGTTAGAGATTATAGTATCAACAAGATATGCATTTCTATTCAAAATGATATAATGGATGCGTCTGGTGTAGCACTTGTATTGATTGGACCTGGCAACATTGATCAGGCCAAAGCCTTTGCTGAGCAAACAAAATTTAAAGGAGACCCCGTTCAATCGTCATATGAGGCCTTACAATTTGTTTCTGGAGTTTTAACCACATTTACCCCCAAAGCAGGTCTTAAGATAATAGAATTGTATATGGAAGGTTATCGACAAGATTGGAAGCTTTCATTCGAAAAGGATACTGTTAGCAGAGGAGGCTGGCAACAAGGAGGAATTATAGTTGCAGGTCCTGGTAAAGGTAACATCTCCTATATTCACAAGGACAAAGAAGCAGGAGATGACCCAGAAATTGAAGATATCTTAAAAGCATGTTGCTCGTGA

Protein sequence

>Msa1169590

MACSTTLLSNSFHLNQLTNKCKLHVYSTLSLNQNLPIYSNNPLKLHHVSTTTTTIPFASPSAGVESPVLGEDTSSSLELVKVFDLEGNGIPISDLWKDRKAVVAFARHFGCVLCRKRADYLASKKIAVFLGKTFERCFKVFLGDDFGSGLLVVRDYSINKICISIQNDIMDASGVALVLIGPGNIDQAKAFAEQTKFKGDPVQSSYEALQFVSGVLTTFTPKAGLKIIELYMEGYRQDWKLSFEKDTVSRGGWQQGGIIVAGPGKGNISYIHKDKEAGDDPEIEDILKACCS*