AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0801320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0801320 MtrunA17_Chr5g0408921 98.544 412 6 0 1 412 1 412 0.0 825
Msa0801320 MtrunA17_Chr8g0369621 71.807 415 113 3 1 412 42 455 0.0 555
Msa0801320 MtrunA17_Chr7g0251871 58.738 412 156 4 1 408 1 402 7.67e-150 436
Msa0801320 MtrunA17_Chr3g0106821 36.905 420 213 10 1 412 1 376 3.36e-76 241
Msa0801320 MtrunA17_Chr3g0106801 37.590 415 218 8 1 412 1 377 2.71e-72 235
Msa0801320 MtrunA17_Chr4g0037301 31.325 415 230 10 5 405 13 386 9.29e-55 190
Msa0801320 MtrunA17_Chr5g0405621 33.172 413 231 12 5 412 11 383 4.02e-53 185
Msa0801320 MtrunA17_Chr2g0304561 26.950 423 258 11 1 402 5 397 8.58e-32 127
Msa0801320 MtrunA17_Chr4g0064981 26.959 434 270 11 2 412 6 415 1.01e-31 127
Msa0801320 MtrunA17_Chr7g0225191 25.926 405 280 9 7 402 15 408 3.27e-27 114
Msa0801320 MtrunA17_Chr3g0132161 22.983 409 262 9 6 402 14 381 8.97e-23 100
Msa0801320 MtrunA17_Chr1g0210291 26.173 405 262 9 7 405 25 398 7.19e-20 92.0
Msa0801320 MtrunA17_Chr1g0210284 24.324 407 268 9 7 405 26 400 1.67e-17 84.7
Msa0801320 MtrunA17_Chr1g0210274 24.079 407 269 9 7 405 26 400 6.08e-17 82.8
Msa0801320 MtrunA17_Chr1g0174101 23.342 407 266 13 7 402 24 395 4.10e-15 77.4
Msa0801320 MtrunA17_Chr7g0264861 25.307 407 273 12 7 405 29 412 3.85e-14 74.3
Msa0801320 MtrunA17_Chr1g0171591 23.020 404 280 11 7 402 24 404 1.12e-13 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0801320 AT4G19450.1 64.593 418 136 3 1 411 1 413 0.0 535
Msa0801320 AT4G19450.2 64.593 418 136 3 1 411 1 413 0.0 534
Msa0801320 AT5G45275.1 66.988 415 132 2 1 411 1 414 0.0 532
Msa0801320 AT1G31470.1 55.340 412 154 3 1 412 37 418 7.98e-144 422
Msa0801320 AT3G01630.1 50.122 411 165 7 6 412 22 396 2.34e-130 386
Msa0801320 AT3G01630.2 50.122 411 165 7 6 412 40 414 5.07e-130 386
Msa0801320 AT2G30300.1 36.077 413 196 10 5 409 2 354 7.64e-59 200
Msa0801320 AT4G34950.1 29.927 411 269 11 7 412 16 412 6.85e-52 183
Msa0801320 AT2G16660.2 29.684 411 250 11 7 412 14 390 2.62e-43 156
Msa0801320 AT2G16660.1 29.684 411 250 11 7 412 14 390 8.40e-42 155
Msa0801320 AT1G80530.1 27.751 418 262 11 2 405 8 399 1.88e-27 114
Msa0801320 AT5G50630.1 25.622 402 251 11 7 402 16 375 4.29e-27 113
Msa0801320 AT5G50520.1 25.622 402 251 11 7 402 16 375 4.29e-27 113
Msa0801320 AT2G28120.1 24.627 402 272 7 7 405 17 390 4.88e-25 107
Msa0801320 AT5G14120.1 24.105 419 278 10 5 402 14 413 3.16e-21 96.3
Msa0801320 AT2G39210.1 22.573 412 275 10 7 406 21 400 3.61e-20 93.2
Msa0801320 AT3G01930.3 24.350 423 277 11 5 402 14 418 1.06e-19 90.9
Msa0801320 AT3G01930.2 24.350 423 277 11 5 402 14 418 1.43e-19 91.3
Msa0801320 AT2G34355.1 28.856 201 115 7 7 188 7 198 1.95e-12 69.3
Msa0801320 AT2G34350.1 29.268 205 123 5 1 188 1 200 6.00e-12 67.8
Msa0801320 AT2G34350.2 29.268 205 123 5 1 188 1 200 6.00e-12 67.8

Find 68 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTCATCATTCTCCTTCTT+TGG 0.212778 5_3:+15088674 Msa0801320:CDS
AAAGTGTTTGGTTGGTCTTC+TGG 0.219575 5_3:+15085660 Msa0801320:CDS
AAAGGAAGGTACCAGAAAAT+AGG 0.264959 5_3:-15085793 None:intergenic
GAAGAGGGACAAGGGCATTT+AGG 0.272558 5_3:-15088004 None:intergenic
TCAATGGGTCTTGTTGGTTA+TGG 0.299224 5_3:+15085732 Msa0801320:CDS
CATGTTTATTGCTGCTTCAA+TGG 0.301959 5_3:+15085716 Msa0801320:CDS
AATGCTAAGGATCTGTTAAC+TGG 0.327320 5_3:-15087888 None:intergenic
CTTGTTTACAGCAATAATCT+TGG 0.332047 5_3:+15088596 Msa0801320:CDS
GGACAGATAGCTCAATCTTT+AGG 0.355909 5_3:+15088617 Msa0801320:CDS
TGATACTAATAGCAACAATA+TGG 0.363183 5_3:+15085520 Msa0801320:CDS
TGGCAGGACAATCAAGAAAA+TGG 0.374666 5_3:+15085496 Msa0801320:CDS
CTGCTTGGTGAAAACGGATA+TGG 0.383934 5_3:+15088416 Msa0801320:CDS
ATGTTTATTGCTGCTTCAAT+GGG 0.387895 5_3:+15085717 Msa0801320:CDS
GCTGCTTCAATGGGTCTTGT+TGG 0.391680 5_3:+15085726 Msa0801320:CDS
TACTTCTGCGGAGGTACAAT+TGG 0.409964 5_3:+15088572 Msa0801320:CDS
CAGCCGCGGTTCTTGTGAAA+AGG 0.416501 5_3:+15088522 Msa0801320:CDS
GCAGGATCAATTGGAAATGC+TGG 0.431793 5_3:+15088487 Msa0801320:CDS
AAGGAAGGTACCAGAAAATA+GGG 0.434118 5_3:-15085792 None:intergenic
TCTCTCTATCTCTTCTTCCT+AGG 0.438796 5_3:-15085461 None:intergenic
GCACTCACTGTGAGTTTCAA+TGG 0.445754 5_3:+15087912 Msa0801320:CDS
GTGTTATATATGCTAGAGAT+TGG 0.448496 5_3:+15088258 Msa0801320:CDS
ATAAACATGACAAGAGAGAT+TGG 0.454947 5_3:-15085702 None:intergenic
CAAGGCCTGCTTGGTGAAAA+CGG 0.464458 5_3:+15088410 Msa0801320:CDS
ACTTACTTTCGAATGTAGTC+AGG 0.465887 5_3:-15088716 None:intergenic
CTTCTCCATTCCTCCCTCCT+AGG 0.467951 5_3:+15085444 None:intergenic
AGATAGAGTTGATCTGATGA+AGG 0.476307 5_3:-15087978 None:intergenic
ACATCAAGGCTTTACTTTGG+TGG 0.477843 5_3:+15088197 Msa0801320:CDS
AAAGGCGGTTGGCGAAGAAT+CGG 0.485100 5_3:-15088050 None:intergenic
GGAGAATGAGTGTCTGATAA+AGG 0.489819 5_3:-15088068 None:intergenic
CTCTATCTCTTCTTCCTAGG+AGG 0.491521 5_3:-15085458 None:intergenic
GAGAGAGAGTCAGTGATGGC+AGG 0.493345 5_3:+15085480 Msa0801320:exon
GCAACATCAAGGCTTTACTT+TGG 0.496044 5_3:+15088194 Msa0801320:CDS
AGTGACATGGGTAAAGTGTT+TGG 0.497761 5_3:+15085648 Msa0801320:CDS
TGAAAGCAAGCGTCCAAAGA+AGG 0.499870 5_3:-15088687 None:intergenic
CGCGGTTCTTGTGAAAAGGT+TGG 0.500230 5_3:+15088526 Msa0801320:CDS
CTTAGCAACTGCAAGTGACA+TGG 0.505520 5_3:+15085635 Msa0801320:CDS
CAAAACAGCGCTCGGAGCAA+TGG 0.514304 5_3:+15088380 Msa0801320:CDS
GGAGATGCTCAAGGCCTGCT+TGG 0.515078 5_3:+15088401 Msa0801320:CDS
TTCTTCCTAGGAGGGAGGAA+TGG 0.524020 5_3:-15085449 None:intergenic
TGAGTGGCTGCAGTATCTGT+TGG 0.525490 5_3:+15087826 Msa0801320:CDS
CACAGTGAGTGCCAATGCTA+AGG 0.532501 5_3:-15087901 None:intergenic
TATTATATTGCATACTTCTG+CGG 0.537599 5_3:+15088560 Msa0801320:CDS
GATAGAGTTGATCTGATGAA+GGG 0.542870 5_3:-15087977 None:intergenic
TCTATCTCTTCTTCCTAGGA+GGG 0.548270 5_3:-15085457 None:intergenic
CGAAGTGAGAAGAGGGACAA+GGG 0.560371 5_3:-15088012 None:intergenic
CAGGATCAATTGGAAATGCT+GGG 0.562484 5_3:+15088488 Msa0801320:CDS
CTTCTGATGAAGCAACATCA+AGG 0.571720 5_3:+15088183 Msa0801320:CDS
CTGCGAGCGAAGTGAGAAGA+GGG 0.581355 5_3:-15088019 None:intergenic
CGGAGCAATGGAGATGCTCA+AGG 0.582212 5_3:+15088392 Msa0801320:CDS
GCGAAGTGAGAAGAGGGACA+AGG 0.583886 5_3:-15088013 None:intergenic
ACATGCTGCTCGTCAGAACT+CGG 0.588359 5_3:+15088091 Msa0801320:CDS
AGTTAACAGATCCTTAGCAT+TGG 0.591254 5_3:+15087890 Msa0801320:CDS
AAGTTGATGATGCAAAGATA+AGG 0.600414 5_3:-15088163 None:intergenic
ATATGGATTCAAGCATTCAC+AGG 0.605178 5_3:+15085537 Msa0801320:CDS
ACATGGGTAAAGTGTTTGGT+TGG 0.605679 5_3:+15085652 Msa0801320:CDS
ATCTCTTCTTCCTAGGAGGG+AGG 0.610223 5_3:-15085454 None:intergenic
GAGTTCTGACGAGCAGCATG+TGG 0.614253 5_3:-15088089 None:intergenic
TTAGCAACTGCAAGTGACAT+GGG 0.619414 5_3:+15085636 Msa0801320:CDS
ATAACACCAGGTATACATAA+CGG 0.620183 5_3:-15088242 None:intergenic
ATGCTAAGGATCTGTTAACT+GGG 0.628103 5_3:-15087887 None:intergenic
GAGTCGACGTTCTATAACTG+TGG 0.628807 5_3:-15088640 None:intergenic
TATATTGCATACTTCTGCGG+AGG 0.634986 5_3:+15088563 Msa0801320:CDS
GCTGCGAGCGAAGTGAGAAG+AGG 0.636097 5_3:-15088020 None:intergenic
GAGTGTCTGATAAAGGCGGT+TGG 0.638280 5_3:-15088061 None:intergenic
TCTCTAGCATATATAACACC+AGG 0.651742 5_3:-15088254 None:intergenic
GGGAGAAGAACATTCAGCCG+CGG 0.691345 5_3:+15088508 Msa0801320:CDS
GAATGAGTGTCTGATAAAGG+CGG 0.762249 5_3:-15088065 None:intergenic
GAAGGCTCGGATGAACAGCG+CGG 0.798034 5_3:-15088286 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATTTTTTTTAATTTAT+GGG - chr5_3:15086119-15086138 None:intergenic 0.0%
!!! TAAATATTTTTTTTAATTTA+TGG - chr5_3:15086120-15086139 None:intergenic 0.0%
!! AGTCTTTATTAATTAATTAA+TGG + chr5_3:15085871-15085890 Msa0801320:intron 10.0%
!!! TTAAAATATTCTTTTTTTGA+TGG + chr5_3:15086279-15086298 Msa0801320:intron 10.0%
!!! AATGATAAAGAATATTTTAA+AGG - chr5_3:15086313-15086332 None:intergenic 10.0%
!!! AAAAATAAGAGTAAAATTTT+AGG + chr5_3:15086751-15086770 Msa0801320:intron 10.0%
!!! CATTATCATTATTTTTTAAT+AGG - chr5_3:15087047-15087066 None:intergenic 10.0%
!! TTAAAAATTAGTAATTACGT+AGG + chr5_3:15085948-15085967 Msa0801320:intron 15.0%
!! TAAAAATTAGTAATTACGTA+GGG + chr5_3:15085949-15085968 Msa0801320:intron 15.0%
!!! AAAAAGGAATATTTTTTGAA+AGG + chr5_3:15086477-15086496 Msa0801320:intron 15.0%
!!! CTTATTTTTATTCAGAAAAT+AGG - chr5_3:15086740-15086759 None:intergenic 15.0%
!!! TATTTTTTAATAGGTTAAGT+TGG - chr5_3:15087038-15087057 None:intergenic 15.0%
!! TACTTAATAAACTAATGATA+TGG + chr5_3:15087278-15087297 Msa0801320:intron 15.0%
!!! CAAAAAGCTTTTAATAATAG+TGG + chr5_3:15086227-15086246 Msa0801320:intron 20.0%
!!! TTTCTTATGTTTTGAATGAA+TGG + chr5_3:15086710-15086729 Msa0801320:intron 20.0%
!! CATCTATGTTAGTATTTATA+TGG - chr5_3:15087365-15087384 None:intergenic 20.0%
! TGATACTAATAGCAACAATA+TGG + chr5_3:15085520-15085539 Msa0801320:CDS 25.0%
! AAAAGGACCTAAAAATGAAA+AGG - chr5_3:15086819-15086838 None:intergenic 25.0%
! TTCTGAATTATAGGGAAAAT+GGG + chr5_3:15087142-15087161 Msa0801320:intron 25.0%
! ATTATCTCTCGATCTTAATT+TGG - chr5_3:15087178-15087197 None:intergenic 25.0%
! TCGAAACATTACTATTTGAA+AGG + chr5_3:15087517-15087536 Msa0801320:intron 25.0%
! CAAGTTCTTAGTTGTATTAT+AGG + chr5_3:15087681-15087700 Msa0801320:intron 25.0%
!! TCTAACATTGAACATTTTAG+CGG + chr5_3:15088121-15088140 Msa0801320:CDS 25.0%
!!! TGAATTGTGACAAGTTTTTT+GGG + chr5_3:15088465-15088484 Msa0801320:CDS 25.0%
! TATTATATTGCATACTTCTG+CGG + chr5_3:15088560-15088579 Msa0801320:CDS 25.0%
ATAAACATGACAAGAGAGAT+TGG - chr5_3:15085705-15085724 None:intergenic 30.0%
! ATGTTTATTGCTGCTTCAAT+GGG + chr5_3:15085717-15085736 Msa0801320:CDS 30.0%
AAATGAGAGATATAGGGTAA+AGG - chr5_3:15085820-15085839 None:intergenic 30.0%
TTACCCTATATCTCTCATTT+CGG + chr5_3:15085820-15085839 Msa0801320:intron 30.0%
GTATGAATGGTTGTTATAGT+GGG + chr5_3:15086028-15086047 Msa0801320:intron 30.0%
TATGAATGGTTGTTATAGTG+GGG + chr5_3:15086029-15086048 Msa0801320:intron 30.0%
!! ACTTTGAGTAGTTTTTGAAG+TGG + chr5_3:15086432-15086451 Msa0801320:intron 30.0%
AAGTGGAAAAGAGAAGATTA+AGG + chr5_3:15086449-15086468 Msa0801320:intron 30.0%
GAAGATTAAGGTCAAGAAAA+AGG + chr5_3:15086461-15086480 Msa0801320:intron 30.0%
TCGAAGAATATACTAGTACT+AGG + chr5_3:15086546-15086565 Msa0801320:intron 30.0%
AAGAATATACTAGTACTAGG+AGG + chr5_3:15086549-15086568 Msa0801320:intron 30.0%
AGGAACAATGCACTTATAAT+GGG + chr5_3:15086569-15086588 Msa0801320:intron 30.0%
! ATACAAAAGCACAGTTGAAA+AGG - chr5_3:15086836-15086855 None:intergenic 30.0%
! TTTTGTATTGTACGTTCAAC+TGG + chr5_3:15086848-15086867 Msa0801320:intron 30.0%
TTCACAAGCTTCTGAATTAT+AGG + chr5_3:15087133-15087152 Msa0801320:intron 30.0%
TCACAAGCTTCTGAATTATA+GGG + chr5_3:15087134-15087153 Msa0801320:intron 30.0%
CTTCTGAATTATAGGGAAAA+TGG + chr5_3:15087141-15087160 Msa0801320:intron 30.0%
!! CTTTGACTTTTGTATGTTTC+AGG + chr5_3:15087785-15087804 Msa0801320:intron 30.0%
!! AAGTTGATGATGCAAAGATA+AGG - chr5_3:15088166-15088185 None:intergenic 30.0%
ATAACACCAGGTATACATAA+CGG - chr5_3:15088245-15088264 None:intergenic 30.0%
GTGTTATATATGCTAGAGAT+TGG + chr5_3:15088258-15088277 Msa0801320:CDS 30.0%
!!! GTGAATTGTGACAAGTTTTT+TGG + chr5_3:15088464-15088483 Msa0801320:CDS 30.0%
! TTGTGAAAAGGTTGGATTTT+TGG + chr5_3:15088534-15088553 Msa0801320:CDS 30.0%
CTTGTTTACAGCAATAATCT+TGG + chr5_3:15088596-15088615 Msa0801320:CDS 30.0%
TATTCATCATTCTCCTTCTT+TGG + chr5_3:15088674-15088693 Msa0801320:CDS 30.0%
ATATGGATTCAAGCATTCAC+AGG + chr5_3:15085537-15085556 Msa0801320:CDS 35.0%
! CATGTTTATTGCTGCTTCAA+TGG + chr5_3:15085716-15085735 Msa0801320:CDS 35.0%
!! AAGGAAGGTACCAGAAAATA+GGG - chr5_3:15085795-15085814 None:intergenic 35.0%
!! AAAGGAAGGTACCAGAAAAT+AGG - chr5_3:15085796-15085815 None:intergenic 35.0%
TATAGGGTAAAGGAAAAGGA+AGG - chr5_3:15085810-15085829 None:intergenic 35.0%
GAGATATAGGGTAAAGGAAA+AGG - chr5_3:15085814-15085833 None:intergenic 35.0%
GAACCGAAATGAGAGATATA+GGG - chr5_3:15085826-15085845 None:intergenic 35.0%
AGAACCGAAATGAGAGATAT+AGG - chr5_3:15085827-15085846 None:intergenic 35.0%
!!! CTCTCATTTCGGTTCTTTTT+TGG + chr5_3:15085831-15085850 Msa0801320:intron 35.0%
AAGTAACCACTATTCGTGTA+TGG + chr5_3:15085911-15085930 Msa0801320:intron 35.0%
AAATAGCCATACACGAATAG+TGG - chr5_3:15085920-15085939 None:intergenic 35.0%
CGTAGGGTTGCATATATATA+TGG + chr5_3:15085965-15085984 Msa0801320:intron 35.0%
AGGGTTGCATATATATATGG+AGG + chr5_3:15085968-15085987 Msa0801320:intron 35.0%
GGGTTGCATATATATATGGA+GGG + chr5_3:15085969-15085988 Msa0801320:intron 35.0%
GGTTGCATATATATATGGAG+GGG + chr5_3:15085970-15085989 Msa0801320:intron 35.0%
GGTATGAATGGTTGTTATAG+TGG + chr5_3:15086027-15086046 Msa0801320:intron 35.0%
GAGGAACAATGCACTTATAA+TGG + chr5_3:15086568-15086587 Msa0801320:intron 35.0%
!! TATAATGGGTGTTAGATGTG+TGG + chr5_3:15086583-15086602 Msa0801320:intron 35.0%
!!! AAGGACGTGTGAGATTTTTT+AGG - chr5_3:15086800-15086819 None:intergenic 35.0%
!! CACACGTCCTTTTCATTTTT+AGG + chr5_3:15086809-15086828 Msa0801320:intron 35.0%
!! TGAGTTCTAGAATCAGCATT+TGG - chr5_3:15086893-15086912 None:intergenic 35.0%
! ATAGATGTCCGAGTTTTCAA+GGG + chr5_3:15087378-15087397 Msa0801320:intron 35.0%
ACTATTTGAAAGGACTCTAG+TGG + chr5_3:15087527-15087546 Msa0801320:intron 35.0%
TAGTGGAGATAGTACAAAGT+AGG + chr5_3:15087544-15087563 Msa0801320:intron 35.0%
TAGTACAAAGTAGGTTCAAG+AGG + chr5_3:15087553-15087572 Msa0801320:intron 35.0%
!!! TTTTTTCTGTGTCTGTTGAG+TGG + chr5_3:15087810-15087829 Msa0801320:CDS 35.0%
ATGCTAAGGATCTGTTAACT+GGG - chr5_3:15087890-15087909 None:intergenic 35.0%
AATGCTAAGGATCTGTTAAC+TGG - chr5_3:15087891-15087910 None:intergenic 35.0%
AGTTAACAGATCCTTAGCAT+TGG + chr5_3:15087890-15087909 Msa0801320:CDS 35.0%
! GATAGAGTTGATCTGATGAA+GGG - chr5_3:15087980-15087999 None:intergenic 35.0%
! AGATAGAGTTGATCTGATGA+AGG - chr5_3:15087981-15088000 None:intergenic 35.0%
!! AACATTTTAGCGGTTTTCAC+AGG + chr5_3:15088131-15088150 Msa0801320:CDS 35.0%
! ATTTTGCCGTTATGTATACC+TGG + chr5_3:15088236-15088255 Msa0801320:CDS 35.0%
TCTCTAGCATATATAACACC+AGG - chr5_3:15088257-15088276 None:intergenic 35.0%
TCTATCTCTTCTTCCTAGGA+GGG - chr5_3:15085460-15085479 None:intergenic 40.0%
TCTCTCTATCTCTTCTTCCT+AGG - chr5_3:15085464-15085483 None:intergenic 40.0%
TGGCAGGACAATCAAGAAAA+TGG + chr5_3:15085496-15085515 Msa0801320:CDS 40.0%
TTAGCAACTGCAAGTGACAT+GGG + chr5_3:15085636-15085655 Msa0801320:CDS 40.0%
! AGTGACATGGGTAAAGTGTT+TGG + chr5_3:15085648-15085667 Msa0801320:CDS 40.0%
! ACATGGGTAAAGTGTTTGGT+TGG + chr5_3:15085652-15085671 Msa0801320:CDS 40.0%
!! AAAGTGTTTGGTTGGTCTTC+TGG + chr5_3:15085660-15085679 Msa0801320:CDS 40.0%
!! TCAATGGGTCTTGTTGGTTA+TGG + chr5_3:15085732-15085751 Msa0801320:CDS 40.0%
! CATCACTTTGCCCTATTTTC+TGG + chr5_3:15085782-15085801 Msa0801320:CDS 40.0%
TCAGTTGTTCTCTTGACTGA+TGG + chr5_3:15085996-15086015 Msa0801320:intron 40.0%
CAGTTGTTCTCTTGACTGAT+GGG + chr5_3:15085997-15086016 Msa0801320:intron 40.0%
!!! GACGTGTGAGATTTTTTAGG+AGG - chr5_3:15086797-15086816 None:intergenic 40.0%
!! GTTAAGTTGGTTGAGTTCTG+TGG - chr5_3:15087025-15087044 None:intergenic 40.0%
! CATAGATGTCCGAGTTTTCA+AGG + chr5_3:15087377-15087396 Msa0801320:intron 40.0%
!! TAGATGTCCGAGTTTTCAAG+GGG + chr5_3:15087379-15087398 Msa0801320:intron 40.0%
AAAACTCAGTATCCGATCCA+AGG - chr5_3:15087437-15087456 None:intergenic 40.0%
GGAGAAGCGGATATCTTAAA+TGG + chr5_3:15087574-15087593 Msa0801320:intron 40.0%
CATAGAGTTGCAACATCTAG+AGG + chr5_3:15087732-15087751 Msa0801320:intron 40.0%
GAATGAGTGTCTGATAAAGG+CGG - chr5_3:15088068-15088087 None:intergenic 40.0%
GGAGAATGAGTGTCTGATAA+AGG - chr5_3:15088071-15088090 None:intergenic 40.0%
CTTCTGATGAAGCAACATCA+AGG + chr5_3:15088183-15088202 Msa0801320:CDS 40.0%
GCAACATCAAGGCTTTACTT+TGG + chr5_3:15088194-15088213 Msa0801320:CDS 40.0%
ACATCAAGGCTTTACTTTGG+TGG + chr5_3:15088197-15088216 Msa0801320:CDS 40.0%
!!! TTGTGACAAGTTTTTTGGGC+AGG + chr5_3:15088469-15088488 Msa0801320:CDS 40.0%
!!! GTTTTTTGGGCAGGATCAAT+TGG + chr5_3:15088478-15088497 Msa0801320:CDS 40.0%
CAGGATCAATTGGAAATGCT+GGG + chr5_3:15088488-15088507 Msa0801320:CDS 40.0%
TATATTGCATACTTCTGCGG+AGG + chr5_3:15088563-15088582 Msa0801320:CDS 40.0%
GGACAGATAGCTCAATCTTT+AGG + chr5_3:15088617-15088636 Msa0801320:CDS 40.0%
CTCTATCTCTTCTTCCTAGG+AGG - chr5_3:15085461-15085480 None:intergenic 45.0%
TAGAGAGAGAGAGTCAGTGA+TGG + chr5_3:15085476-15085495 Msa0801320:exon 45.0%
CTTAGCAACTGCAAGTGACA+TGG + chr5_3:15085635-15085654 Msa0801320:CDS 45.0%
TTGTTCTCTTGACTGATGGG+TGG + chr5_3:15086000-15086019 Msa0801320:intron 45.0%
ATGGGTGGAGATGGTATGAA+TGG + chr5_3:15086015-15086034 Msa0801320:intron 45.0%
ATCGTTGCACAGCAAATAGC+TGG - chr5_3:15086612-15086631 None:intergenic 45.0%
! TTTGGAGCCTGGGAGTTATT+GGG - chr5_3:15086875-15086894 None:intergenic 45.0%
! ATTTGGAGCCTGGGAGTTAT+TGG - chr5_3:15086876-15086895 None:intergenic 45.0%
! AGAATCAGCATTTGGAGCCT+GGG - chr5_3:15086885-15086904 None:intergenic 45.0%
! TAGAATCAGCATTTGGAGCC+TGG - chr5_3:15086886-15086905 None:intergenic 45.0%
!! AGATGTCCGAGTTTTCAAGG+GGG + chr5_3:15087380-15087399 Msa0801320:intron 45.0%
ATTGGTCCCCTCGAATTAGT+CGG + chr5_3:15087410-15087429 Msa0801320:intron 45.0%
GAATTAGTCGGTCCTTGGAT+CGG + chr5_3:15087422-15087441 Msa0801320:intron 45.0%
AGTAGGTTCAAGAGGAGAAG+CGG + chr5_3:15087561-15087580 Msa0801320:intron 45.0%
GCACTCACTGTGAGTTTCAA+TGG + chr5_3:15087912-15087931 Msa0801320:CDS 45.0%
!! AGCTAGAGTTTTCGACTCGA+AGG - chr5_3:15088307-15088326 None:intergenic 45.0%
! CATATCCGTTTTCACCAAGC+AGG - chr5_3:15088418-15088437 None:intergenic 45.0%
! CTGCTTGGTGAAAACGGATA+TGG + chr5_3:15088416-15088435 Msa0801320:CDS 45.0%
GCAGGATCAATTGGAAATGC+TGG + chr5_3:15088487-15088506 Msa0801320:CDS 45.0%
! CAACCTTTTCACAAGAACCG+CGG - chr5_3:15088528-15088547 None:intergenic 45.0%
! TACTTCTGCGGAGGTACAAT+TGG + chr5_3:15088572-15088591 Msa0801320:CDS 45.0%
GAGTCGACGTTCTATAACTG+TGG - chr5_3:15088643-15088662 None:intergenic 45.0%
TGAAAGCAAGCGTCCAAAGA+AGG - chr5_3:15088690-15088709 None:intergenic 45.0%
!! ATAATAATAATAATAATATG+TGG - chr5_3:15086923-15086942 None:intergenic 5.0%
!!! TTTTCATTATTTTTTTTTAT+AGG - chr5_3:15087078-15087097 None:intergenic 5.0%
TTCTTCCTAGGAGGGAGGAA+TGG - chr5_3:15085452-15085471 None:intergenic 50.0%
ATCTCTTCTTCCTAGGAGGG+AGG - chr5_3:15085457-15085476 None:intergenic 50.0%
! GCTGCTTCAATGGGTCTTGT+TGG + chr5_3:15085726-15085745 Msa0801320:CDS 50.0%
! TCTTGACTGATGGGTGGAGA+TGG + chr5_3:15086006-15086025 Msa0801320:intron 50.0%
GTTGCACAGCAAATAGCTGG+AGG - chr5_3:15086609-15086628 None:intergenic 50.0%
AACTGGTCCCAATAACTCCC+AGG + chr5_3:15086865-15086884 Msa0801320:intron 50.0%
TGGTTGAGTTCTGTGGACGT+TGG - chr5_3:15087018-15087037 None:intergenic 50.0%
CAAGGACCGACTAATTCGAG+GGG - chr5_3:15087419-15087438 None:intergenic 50.0%
CCAAGGACCGACTAATTCGA+GGG - chr5_3:15087420-15087439 None:intergenic 50.0%
TCCAAGGACCGACTAATTCG+AGG - chr5_3:15087421-15087440 None:intergenic 50.0%
TGAGTGGCTGCAGTATCTGT+TGG + chr5_3:15087826-15087845 Msa0801320:CDS 50.0%
CACAGTGAGTGCCAATGCTA+AGG - chr5_3:15087904-15087923 None:intergenic 50.0%
!! GAAGAGGGACAAGGGCATTT+AGG - chr5_3:15088007-15088026 None:intergenic 50.0%
CGAAGTGAGAAGAGGGACAA+GGG - chr5_3:15088015-15088034 None:intergenic 50.0%
AAAGGCGGTTGGCGAAGAAT+CGG - chr5_3:15088053-15088072 None:intergenic 50.0%
GAGTGTCTGATAAAGGCGGT+TGG - chr5_3:15088064-15088083 None:intergenic 50.0%
ACATGCTGCTCGTCAGAACT+CGG + chr5_3:15088091-15088110 Msa0801320:CDS 50.0%
!! GAGTTTTCGACTCGAAGGCT+CGG - chr5_3:15088302-15088321 None:intergenic 50.0%
TTACGCGTCAAAACAGCGCT+CGG + chr5_3:15088372-15088391 Msa0801320:CDS 50.0%
! CAAGGCCTGCTTGGTGAAAA+CGG + chr5_3:15088410-15088429 Msa0801320:CDS 50.0%
CGCGGTTCTTGTGAAAAGGT+TGG + chr5_3:15088526-15088545 Msa0801320:CDS 50.0%
GAGAGAGAGTCAGTGATGGC+AGG + chr5_3:15085480-15085499 Msa0801320:exon 55.0%
!! TGTCCGAGTTTTCAAGGGGG+CGG + chr5_3:15087383-15087402 Msa0801320:intron 55.0%
CCCTCGAATTAGTCGGTCCT+TGG + chr5_3:15087417-15087436 Msa0801320:intron 55.0%
GCGAAGTGAGAAGAGGGACA+AGG - chr5_3:15088016-15088035 None:intergenic 55.0%
CTGCGAGCGAAGTGAGAAGA+GGG - chr5_3:15088022-15088041 None:intergenic 55.0%
! GAGTTCTGACGAGCAGCATG+TGG - chr5_3:15088092-15088111 None:intergenic 55.0%
!!! GAGCGCTGTTTTGACGCGTA+AGG - chr5_3:15088373-15088392 None:intergenic 55.0%
CAAAACAGCGCTCGGAGCAA+TGG + chr5_3:15088380-15088399 Msa0801320:CDS 55.0%
CGGAGCAATGGAGATGCTCA+AGG + chr5_3:15088392-15088411 Msa0801320:CDS 55.0%
GGGAGAAGAACATTCAGCCG+CGG + chr5_3:15088508-15088527 Msa0801320:CDS 55.0%
CAGCCGCGGTTCTTGTGAAA+AGG + chr5_3:15088522-15088541 Msa0801320:CDS 55.0%
CCACCGCCCCCTTGAAAACT+CGG - chr5_3:15087389-15087408 None:intergenic 60.0%
!! CGAGTTTTCAAGGGGGCGGT+GGG + chr5_3:15087387-15087406 Msa0801320:intron 60.0%
TTTCAAGGGGGCGGTGGGAT+TGG + chr5_3:15087392-15087411 Msa0801320:intron 60.0%
GCTGCGAGCGAAGTGAGAAG+AGG - chr5_3:15088023-15088042 None:intergenic 60.0%
GAAGGCTCGGATGAACAGCG+CGG - chr5_3:15088289-15088308 None:intergenic 60.0%
GGAGATGCTCAAGGCCTGCT+TGG + chr5_3:15088401-15088420 Msa0801320:CDS 60.0%
!! CCGAGTTTTCAAGGGGGCGG+TGG + chr5_3:15087386-15087405 Msa0801320:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 15085449 15088736 15085449 ID=Msa0801320;Name=Msa0801320
chr5_3 mRNA 15085449 15088736 15085449 ID=Msa0801320-mRNA-1;Parent=Msa0801320;Name=Msa0801320-mRNA-1;_AED=0.15;_eAED=0.15;_QI=46|1|0.5|1|1|1|2|0|412
chr5_3 exon 15085449 15085803 15085449 ID=Msa0801320-mRNA-1:exon:6319;Parent=Msa0801320-mRNA-1
chr5_3 exon 15087807 15088736 15087807 ID=Msa0801320-mRNA-1:exon:6320;Parent=Msa0801320-mRNA-1
chr5_3 five_prime_UTR 15085449 15085494 15085449 ID=Msa0801320-mRNA-1:five_prime_utr;Parent=Msa0801320-mRNA-1
chr5_3 CDS 15085495 15085803 15085495 ID=Msa0801320-mRNA-1:cds;Parent=Msa0801320-mRNA-1
chr5_3 CDS 15087807 15088736 15087807 ID=Msa0801320-mRNA-1:cds;Parent=Msa0801320-mRNA-1
Gene Sequence

>Msa0801320

ATGGCAGGACAATCAAGAAAATGGATGATACTAATAGCAACAATATGGATTCAAGCATTCACAGGAACAAATTTTGATTTCTCATCATACTCATCAACAATGAAATCTGTACTCAAAATCTCACAAGTGCAACTTAACTACTTAGCAACTGCAAGTGACATGGGTAAAGTGTTTGGTTGGTCTTCTGGTCTTGCTCTTATGTATCTTCCAATCTCTCTTGTCATGTTTATTGCTGCTTCAATGGGTCTTGTTGGTTATGGTCTTCAATTTCTTCTCATTAATGACGTCATCACTTTGCCCTATTTTCTGGTTTTTTTTCTGTGTCTGTTGAGTGGCTGCAGTATCTGTTGGTTCAACACAGTATGTTTTGTTCTCTGCATCAAAAACTTCCCAGTTAACAGATCCTTAGCATTGGCACTCACTGTGAGTTTCAATGGCGTAAGTGCAGCACTCTACACTCTAGCTGCAAATTCAATAAACCCTTCATCAGATCAACTCTATCTTCTCCTAAATGCCCTTGTCCCTCTTCTCACTTCGCTCGCAGCATTACTTCCGATTCTTCGCCAACCGCCTTTATCAGACACTCATTCTCCACATGCTGCTCGTCAGAACTCGGTTATATTTCTAACATTGAACATTTTAGCGGTTTTCACAGGAATTTATCTCCTTATCTTTGCATCATCAACTTCTGATGAAGCAACATCAAGGCTTTACTTTGGTGGAGCTCTTATACTTTTGATTTTGCCGTTATGTATACCTGGTGTTATATATGCTAGAGATTGGTTTCACCGCGCTGTTCATCCGAGCCTTCGAGTCGAAAACTCTAGCTTCATTCTTGTTCATGTTAATGATCTTGAGCTTCACAAAGAACTCCTTACGCGTCAAAACAGCGCTCGGAGCAATGGAGATGCTCAAGGCCTGCTTGGTGAAAACGGATATGGTACTCAGAGAGCAAAGAGTAGTGATGTGAATTGTGACAAGTTTTTTGGGCAGGATCAATTGGAAATGCTGGGAGAAGAACATTCAGCCGCGGTTCTTGTGAAAAGGTTGGATTTTTGGCTTTATTATATTGCATACTTCTGCGGAGGTACAATTGGTCTTGTTTACAGCAATAATCTTGGACAGATAGCTCAATCTTTAGGCCACAGTTATAGAACGTCGACTCTTGTGACGCTATATTCATCATTCTCCTTCTTTGGACGCTTGCTTTCAGCTATGCCTGACTACATTCGAAAGTAA

Protein sequence

>Msa0801320

MAGQSRKWMILIATIWIQAFTGTNFDFSSYSSTMKSVLKISQVQLNYLATASDMGKVFGWSSGLALMYLPISLVMFIAASMGLVGYGLQFLLINDVITLPYFLVFFLCLLSGCSICWFNTVCFVLCIKNFPVNRSLALALTVSFNGVSAALYTLAANSINPSSDQLYLLLNALVPLLTSLAALLPILRQPPLSDTHSPHAARQNSVIFLTLNILAVFTGIYLLIFASSTSDEATSRLYFGGALILLILPLCIPGVIYARDWFHRAVHPSLRVENSSFILVHVNDLELHKELLTRQNSARSNGDAQGLLGENGYGTQRAKSSDVNCDKFFGQDQLEMLGEEHSAAVLVKRLDFWLYYIAYFCGGTIGLVYSNNLGQIAQSLGHSYRTSTLVTLYSSFSFFGRLLSAMPDYIRK*