AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0719730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0719730 MtrunA17_Chr5g0410621 70.201 349 32 3 1 277 1 349 3.73e-144 408
Msa0719730 MtrunA17_Chr8g0382041 39.583 288 97 6 36 250 28 311 2.72e-60 194
Msa0719730 MtrunA17_Chr8g0375981 51.974 152 65 3 103 252 164 309 3.27e-53 176
Msa0719730 MtrunA17_Chr1g0161951 52.201 159 70 3 103 260 166 319 5.21e-51 170
Msa0719730 MtrunA17_Chr1g0161951 53.846 91 41 1 17 107 9 98 8.73e-25 101
Msa0719730 MtrunA17_Chr8g0365231 46.667 135 65 3 103 233 179 310 4.52e-34 125
Msa0719730 MtrunA17_Chr4g0028221 38.168 131 71 2 103 233 184 304 1.14e-26 105
Msa0719730 MtrunA17_Chr8g0340001 32.061 131 85 1 103 233 105 231 1.55e-22 93.2
Msa0719730 MtrunA17_Chr2g0327411 34.351 131 77 3 103 233 188 309 7.26e-22 92.8
Msa0719730 MtrunA17_Chr4g0054431 28.992 238 142 6 9 233 64 287 3.55e-21 90.5
Msa0719730 MtrunA17_Chr4g0054451 28.992 238 142 6 9 233 66 289 3.58e-21 90.5
Msa0719730 MtrunA17_Chr1g0180451 26.333 300 128 7 17 233 5 294 2.55e-20 88.6
Msa0719730 MtrunA17_Chr6g0461761 32.836 134 81 4 103 233 160 287 1.14e-19 86.7
Msa0719730 MtrunA17_Chr7g0252631 30.597 134 86 3 103 234 160 288 2.75e-19 85.5
Msa0719730 MtrunA17_Chr7g0252621 30.597 134 86 3 103 234 160 288 3.57e-19 85.1
Msa0719730 MtrunA17_Chr7g0264731 34.091 132 77 2 103 234 171 292 8.34e-19 84.3
Msa0719730 MtrunA17_Chr7g0252601 30.597 134 84 4 103 233 160 287 4.11e-18 82.4
Msa0719730 MtrunA17_Chr2g0323161 31.618 136 88 3 103 233 151 286 5.15e-18 82.0
Msa0719730 MtrunA17_Chr1g0206081 30.216 139 91 3 103 239 166 300 6.74e-18 81.6
Msa0719730 MtrunA17_Chr6g0461731 32.090 134 82 4 103 233 183 310 6.95e-18 82.0
Msa0719730 MtrunA17_Chr4g0023961 33.088 136 86 3 103 233 153 288 7.49e-18 81.6
Msa0719730 MtrunA17_Chr6g0486581 33.083 133 86 3 103 233 152 283 1.31e-16 77.8
Msa0719730 MtrunA17_Chr4g0072681 28.358 134 94 2 103 234 111 244 2.79e-15 73.6
Msa0719730 MtrunA17_Chr4g0072601 33.083 133 82 3 103 233 156 283 1.25e-14 72.4
Msa0719730 MtrunA17_Chr1g0206681 27.941 136 91 4 103 235 162 293 1.79e-14 72.0
Msa0719730 MtrunA17_Chr8g0390201 31.111 135 86 5 103 233 78 209 4.82e-14 69.7
Msa0719730 MtrunA17_Chr4g0071341 30.370 135 88 4 103 235 153 283 4.88e-14 70.5
Msa0719730 MtrunA17_Chr3g0096651 30.075 133 83 4 103 233 158 282 1.21e-13 69.7
Msa0719730 MtrunA17_Chr4g0072611 29.630 135 88 4 103 235 153 282 5.37e-13 67.8
Msa0719730 MtrunA17_Chr7g0258911 29.412 136 89 4 103 236 152 282 7.60e-13 67.0
Msa0719730 MtrunA17_Chr7g0235541 26.316 133 89 3 103 235 86 209 1.97e-12 65.1
Msa0719730 MtrunA17_Chr2g0303861 35.514 107 67 1 19 123 6 112 2.34e-12 65.9
Msa0719730 MtrunA17_Chr2g0303861 26.891 119 78 4 103 220 158 268 7.42e-11 61.2
Msa0719730 MtrunA17_Chr4g0072641 29.927 137 74 6 100 233 31 148 2.54e-12 63.5
Msa0719730 MtrunA17_Chr2g0303721 24.444 135 91 4 103 237 151 274 7.01e-12 64.3
Msa0719730 MtrunA17_Chr3g0122031 29.787 141 81 5 103 242 156 279 1.93e-11 63.2
Msa0719730 MtrunA17_Chr3g0122021 29.787 141 81 5 103 242 156 279 2.18e-11 62.8
Msa0719730 MtrunA17_Chr8g0374231 28.829 111 74 2 130 239 1 107 3.43e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0719730 AT1G32170.1 68.627 153 46 1 103 255 165 315 5.34e-74 230
Msa0719730 AT1G32170.1 56.250 96 41 1 12 106 1 96 1.81e-25 103
Msa0719730 AT4G18990.2 57.927 164 60 1 103 257 99 262 6.27e-66 207
Msa0719730 AT4G18990.1 58.642 162 58 1 103 255 173 334 7.01e-65 207
Msa0719730 AT4G18990.1 67.606 71 23 0 36 106 34 104 9.81e-25 102
Msa0719730 AT2G01850.1 48.837 172 83 2 103 273 164 331 9.10e-52 172
Msa0719730 AT2G01850.1 53.571 84 36 1 27 107 13 96 3.80e-20 89.0
Msa0719730 AT1G14720.1 46.784 171 87 1 103 273 164 330 2.19e-49 166
Msa0719730 AT1G14720.1 45.745 94 48 1 17 107 3 96 2.72e-21 92.0
Msa0719730 AT1G10550.1 42.029 138 73 2 103 234 174 310 1.50e-31 119
Msa0719730 AT4G13090.1 37.405 131 80 1 103 233 160 288 1.62e-28 110
Msa0719730 AT4G13080.1 26.298 289 134 7 18 233 9 291 1.41e-27 108
Msa0719730 AT3G25050.1 35.878 131 80 2 103 233 163 289 2.44e-27 107
Msa0719730 AT3G44990.1 36.641 131 73 2 103 233 173 293 2.47e-23 97.1
Msa0719730 AT4G37800.1 36.090 133 79 2 103 234 163 290 2.83e-23 96.7
Msa0719730 AT5G13870.2 32.836 134 81 4 103 233 160 287 1.29e-22 95.1
Msa0719730 AT5G13870.1 32.836 134 81 4 103 233 160 287 1.29e-22 95.1
Msa0719730 AT5G13870.3 32.836 134 81 4 103 233 160 287 1.29e-22 95.1
Msa0719730 AT5G65730.1 36.090 133 77 3 103 233 164 290 2.15e-21 91.7
Msa0719730 AT2G06850.2 29.323 133 87 3 103 233 103 230 3.83e-20 87.0
Msa0719730 AT2G06850.1 29.323 133 87 3 103 233 163 290 1.14e-19 87.0
Msa0719730 AT2G36870.1 35.338 133 72 3 103 233 177 297 2.59e-19 85.9
Msa0719730 AT4G28850.1 34.058 138 81 5 103 234 155 288 3.48e-18 82.8
Msa0719730 AT4G03210.2 30.075 133 90 2 103 234 127 257 6.89e-18 81.6
Msa0719730 AT4G03210.1 30.075 133 90 2 103 234 155 285 1.25e-17 81.3
Msa0719730 AT4G30290.1 32.090 134 80 4 103 234 153 277 2.16e-17 80.5
Msa0719730 AT1G11545.1 31.655 139 87 4 103 237 169 303 4.17e-17 80.1
Msa0719730 AT3G23730.1 32.836 134 85 4 103 233 155 286 3.87e-16 77.0
Msa0719730 AT5G57550.1 30.370 135 80 4 103 233 158 282 3.94e-16 77.0
Msa0719730 AT4G30280.1 31.343 134 81 4 103 234 158 282 3.60e-15 74.3
Msa0719730 AT5G48070.1 29.851 134 83 4 103 234 158 282 3.93e-15 73.9
Msa0719730 AT2G14620.1 27.007 137 91 4 103 235 165 296 8.08e-15 73.6
Msa0719730 AT2G14620.2 27.007 137 91 4 103 235 115 246 8.45e-15 72.8
Msa0719730 AT2G14620.3 27.007 137 91 4 103 235 104 235 9.00e-15 72.4
Msa0719730 AT4G14130.1 32.117 137 79 5 103 233 156 284 1.71e-14 72.4
Msa0719730 AT2G18800.1 30.496 141 88 4 103 233 156 296 2.84e-14 72.0
Msa0719730 AT5G57560.1 29.323 133 90 3 103 233 151 281 2.92e-14 71.6
Msa0719730 AT1G65310.1 30.075 133 82 4 103 233 158 281 4.69e-14 70.9
Msa0719730 AT1G65310.2 30.075 133 82 4 103 233 180 303 6.34e-14 70.9
Msa0719730 AT5G57540.1 28.671 143 79 4 103 235 154 283 9.73e-14 70.1
Msa0719730 AT5G57530.1 30.882 136 85 5 103 235 155 284 2.77e-13 68.9
Msa0719730 AT4G25810.1 29.323 133 89 3 103 233 154 283 6.59e-13 67.8
Msa0719730 AT4G30270.1 27.820 133 75 4 103 233 152 265 8.66e-13 67.4
Msa0719730 AT4G25820.1 27.737 137 92 4 101 235 156 287 5.48e-12 65.1

Find 99 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTAACACCTCCCTAAT+TGG 0.183555 5_1:-15192437 None:intergenic
TGAAAATAGGAAATGAGTTT+TGG 0.219960 5_1:-15189528 None:intergenic
AATTAAGTGGTTATATAAAT+TGG 0.236135 5_1:+15193030 Msa0719730:three_prime_UTR
AGCGGAGAAACAAAGATTTA+AGG 0.248971 5_1:+15192817 Msa0719730:CDS
ACATTGATGAAGTTCCAATT+AGG 0.258577 5_1:+15192423 Msa0719730:CDS
CCATATGGGATGCATCAAAT+TGG 0.259813 5_1:+15192510 Msa0719730:CDS
CTTATTGCTATGATACAATT+AGG 0.266532 5_1:+15192759 Msa0719730:CDS
GAATAAGTCAAAATACATTA+TGG 0.269567 5_1:+15193161 Msa0719730:three_prime_UTR
TACACTCTGGTGGTGGTATA+TGG 0.307094 5_1:-15192784 None:intergenic
TACAATGACATTGGCTTGAC+TGG 0.309723 5_1:-15192482 None:intergenic
GAGACCGGAAGGTTGAAATT+TGG 0.317179 5_1:+15192839 Msa0719730:CDS
TCCACCAAATTTCAACCTTC+CGG 0.321360 5_1:-15192843 None:intergenic
CATTGATGAAGTTCCAATTA+GGG 0.352975 5_1:+15192424 Msa0719730:CDS
CGCATTGCGAGGCGGCGCAT+GGG 0.354309 5_1:-15192707 None:intergenic
GGTGTTAAGAAGTGAGGAAA+TGG 0.365576 5_1:+15192448 Msa0719730:CDS
TTGTCGGATACTTCTTGAAT+TGG 0.369307 5_1:-15192626 None:intergenic
GGGGATATTGGTCTTTGATT+GGG 0.370455 5_1:-15189360 None:intergenic
TCGCATTGCGAGGCGGCGCA+TGG 0.371340 5_1:-15192708 None:intergenic
GAGCTTCAAGATGAACGTTT+TGG 0.373175 5_1:-15192664 None:intergenic
AGGGGATATTGGTCTTTGAT+TGG 0.373988 5_1:-15189361 None:intergenic
TGTCATTGTATGCGACCATA+TGG 0.384464 5_1:+15192495 Msa0719730:CDS
GAAGCCACCGCCGACATTCT+AGG 0.386095 5_1:+15192864 Msa0719730:CDS
GATTAAACAAAATAGTGTTT+TGG 0.401466 5_1:+15193054 Msa0719730:three_prime_UTR
CCAATTTGATGCATCCCATA+TGG 0.416702 5_1:-15192510 None:intergenic
CTGAACAACCTTTGAGGACT+AGG 0.425502 5_1:-15192598 None:intergenic
AATAAGTCAAAATACATTAT+GGG 0.425904 5_1:+15193162 Msa0719730:three_prime_UTR
GTCGGAGCAAACGTCGTTGT+CGG 0.428810 5_1:-15192642 None:intergenic
AAAGAACCAAGTTAATTGAT+AGG 0.447398 5_1:-15189390 None:intergenic
GAACAAGAAAACAAAGAAAG+TGG 0.447911 5_1:+15189437 Msa0719730:five_prime_UTR
ATAGGAAATCAAGGGGATAT+TGG 0.454739 5_1:-15189372 None:intergenic
TTAAATCTTTGTTTCTCCGC+TGG 0.456783 5_1:-15192815 None:intergenic
ATCATACCTTACGTTGTTGT+GGG 0.467592 5_1:+15189498 Msa0719730:CDS
GATCAACTGAACAACCTTTG+AGG 0.468484 5_1:-15192604 None:intergenic
GCATTGCGAGGCGGCGCATG+GGG 0.468919 5_1:-15192706 None:intergenic
GATGGTTATTCTCATCTCTT+CGG 0.471374 5_1:+15189620 Msa0719730:CDS
GATTGACGTAGATAATTAAG+TGG 0.483079 5_1:+15193017 Msa0719730:three_prime_UTR
TCCTTAAATTCAACAACAAA+AGG 0.483638 5_1:-15192575 None:intergenic
GTGTTAAGAAGTGAGGAAAT+GGG 0.483994 5_1:+15192449 Msa0719730:CDS
CATATGGGATGCATCAAATT+GGG 0.485871 5_1:+15192511 Msa0719730:CDS
TGATTTCCTATCAATTAACT+TGG 0.487553 5_1:+15189384 Msa0719730:five_prime_UTR
GCATCAAATTGGGCAACATC+GGG 0.487694 5_1:+15192521 Msa0719730:CDS
AGTTAATTGATAGGAAATCA+AGG 0.489219 5_1:-15189381 None:intergenic
ACCGGAAGGTTGAAATTTGG+TGG 0.496307 5_1:+15192842 Msa0719730:CDS
CCTTGATCGGTGTCATCTAC+CGG 0.499492 5_1:-15192908 None:intergenic
CAGTAGGTAGAATATAAAAT+CGG 0.499546 5_1:+15193110 Msa0719730:three_prime_UTR
ATGAGAATAACCATCGTTGA+AGG 0.501640 5_1:-15189612 None:intergenic
TGCATCAAATTGGGCAACAT+CGG 0.504906 5_1:+15192520 Msa0719730:CDS
TTAGTGTGTGTTGTTTCAGT+AGG 0.506200 5_1:+15193094 Msa0719730:three_prime_UTR
CATCATACCTTACGTTGTTG+TGG 0.506997 5_1:+15189497 Msa0719730:CDS
CCCGCCTAGAATGTCGGCGG+TGG 0.511235 5_1:-15192868 None:intergenic
ATAACCATCGTTGAAGGGTA+TGG 0.513569 5_1:-15189606 None:intergenic
TATTCTCATCTCTTCGGAGA+TGG 0.518704 5_1:+15189626 Msa0719730:CDS
AAACAAAGATTTAAGGAGAC+CGG 0.526680 5_1:+15192824 Msa0719730:CDS
TTACCATCGAATTATACTGC+TGG 0.532109 5_1:+15189885 Msa0719730:CDS
GGCGGAACCTTCGCATTGCG+AGG 0.537482 5_1:-15192718 None:intergenic
CCACCGCCGACATTCTAGGC+GGG 0.539580 5_1:+15192868 Msa0719730:CDS
TGTAACGATCGAGGAGGAGT+TGG 0.545650 5_1:-15189682 None:intergenic
TAGGGAGGTGTTAAGAAGTG+AGG 0.547833 5_1:+15192442 Msa0719730:CDS
TCATCACATATCACCTTGAT+CGG 0.551054 5_1:-15192921 None:intergenic
CTCCTCCTCGATCGTTACAC+CGG 0.556457 5_1:+15189686 Msa0719730:CDS
CCGGTAGATGACACCGATCA+AGG 0.556925 5_1:+15192908 Msa0719730:CDS
GTTAATTGATAGGAAATCAA+GGG 0.558166 5_1:-15189380 None:intergenic
TGCGCCGCCTCGCAATGCGA+AGG 0.560204 5_1:+15192711 Msa0719730:CDS
GAGTTGGACACCGTTGCTAT+CGG 0.565203 5_1:-15189666 None:intergenic
TCAAATTGGGCAACATCGGG+TGG 0.571083 5_1:+15192524 Msa0719730:CDS
CAAGAAAACAAAGAAAGTGG+AGG 0.571223 5_1:+15189440 Msa0719730:five_prime_UTR
GCAACCATACCCTTCAACGA+TGG 0.573013 5_1:+15189602 Msa0719730:CDS
GGGTGGTCGTACTTCAACTC+CGG 0.575069 5_1:+15192889 Msa0719730:CDS
CACCGCCGACATTCTAGGCG+GGG 0.578126 5_1:+15192869 Msa0719730:CDS
CGTTGAAGGGTATGGTTGCA+AGG 0.578257 5_1:-15189598 None:intergenic
TTTAAGGACCTAGTCCTCAA+AGG 0.590319 5_1:+15192590 Msa0719730:CDS
TATGTTCCCACAACAACGTA+AGG 0.595015 5_1:-15189504 None:intergenic
ATAATATTACACTCTGGTGG+TGG 0.597029 5_1:-15192791 None:intergenic
GGAACCTTCGCATTGCGAGG+CGG 0.602262 5_1:-15192715 None:intergenic
GACCACCCCGCCTAGAATGT+CGG 0.605547 5_1:-15192874 None:intergenic
ACAATGACATTGGCTTGACT+GGG 0.607221 5_1:-15192481 None:intergenic
CATTGCGAGGCGGCGCATGG+GGG 0.608687 5_1:-15192705 None:intergenic
GTTCGTTCCTCCGATAGCAA+CGG 0.617269 5_1:+15189656 Msa0719730:CDS
ATTCCAGCAGTATAATTCGA+TGG 0.624666 5_1:-15189888 None:intergenic
GTCATTGTATGCGACCATAT+GGG 0.625776 5_1:+15192496 Msa0719730:CDS
TGAGAATAACCATCGTTGAA+GGG 0.630960 5_1:-15189611 None:intergenic
TCATCAAATATGTATCAACA+TGG 0.635106 5_1:+15189840 Msa0719730:CDS
AAGAGTAGTACATGAAACGT+TGG 0.637745 5_1:-15192739 None:intergenic
AAAGATTTAAGGAGACCGGA+AGG 0.638530 5_1:+15192828 Msa0719730:CDS
AGTCAAAATACATTATGGGA+CGG 0.640377 5_1:+15193166 Msa0719730:three_prime_UTR
CGCCGACATTCTAGGCGGGG+TGG 0.642323 5_1:+15192872 Msa0719730:CDS
AGTAGTACATGAAACGTTGG+CGG 0.642577 5_1:-15192736 None:intergenic
GGAATAATATTACACTCTGG+TGG 0.643905 5_1:-15192794 None:intergenic
TGATGAAGTTCCAATTAGGG+AGG 0.646761 5_1:+15192427 Msa0719730:CDS
GCTGGAATAATATTACACTC+TGG 0.647855 5_1:-15192797 None:intergenic
ATGGTCGCATACAATGACAT+TGG 0.648480 5_1:-15192491 None:intergenic
TTAATTGATAGGAAATCAAG+GGG 0.655769 5_1:-15189379 None:intergenic
AATTACCGGTGTAACGATCG+AGG 0.659486 5_1:-15189691 None:intergenic
TTGGACACCGTTGCTATCGG+AGG 0.660493 5_1:-15189663 None:intergenic
AGAGTGTAATATTATTCCAG+CGG 0.676164 5_1:+15192799 Msa0719730:CDS
CACCCCGCCTAGAATGTCGG+CGG 0.677092 5_1:-15192871 None:intergenic
GCCACCGCCGACATTCTAGG+CGG 0.701881 5_1:+15192867 Msa0719730:CDS
TTAAGAAGTGAGGAAATGGG+AGG 0.722839 5_1:+15192452 Msa0719730:CDS
TACCGGTGTAACGATCGAGG+AGG 0.741407 5_1:-15189688 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTGATTAAGTTTTTTTAT+AGG + chr5_1:15189804-15189823 Msa0719730:intron 10.0%
!!! TATATAAATATTTTTTGTGT+TGG + chr5_1:15190203-15190222 Msa0719730:intron 10.0%
!! ATGTTAGTATATAAAATTAT+AGG + chr5_1:15191187-15191206 Msa0719730:intron 10.0%
!! GAAAATATAAAATAAAAAAG+AGG - chr5_1:15191235-15191254 None:intergenic 10.0%
!! TATTTAACAAAATATTAGTA+AGG - chr5_1:15192332-15192351 None:intergenic 10.0%
!!! ATTTTTTATGGATTTTTTTT+TGG + chr5_1:15192970-15192989 Msa0719730:three_prime_UTR 10.0%
!!! TTTTTTATGGATTTTTTTTT+GGG + chr5_1:15192971-15192990 Msa0719730:three_prime_UTR 10.0%
!! ATAGAGAAAAAAATGAAAAT+AGG - chr5_1:15189544-15189563 None:intergenic 15.0%
!! TGATTTAATAATTGAATTAC+CGG - chr5_1:15189708-15189727 None:intergenic 15.0%
!!! AGATTGTTTAATATTTTATG+TGG + chr5_1:15190027-15190046 Msa0719730:intron 15.0%
!!! ATTTAAAGTATAAGATGATA+TGG - chr5_1:15190725-15190744 None:intergenic 15.0%
!! TATCATCTTATACTTTAAAT+TGG + chr5_1:15190725-15190744 Msa0719730:intron 15.0%
!!! TTTGCATTTGTTAATTTAAA+AGG - chr5_1:15190894-15190913 None:intergenic 15.0%
!!! TGCAGTTTATTTTTTTATAT+CGG - chr5_1:15191146-15191165 None:intergenic 15.0%
!!! TAATTATACCTTTCTAAAAT+GGG - chr5_1:15191555-15191574 None:intergenic 15.0%
!!! TTAATTATACCTTTCTAAAA+TGG - chr5_1:15191556-15191575 None:intergenic 15.0%
!!! TTTTTTCTTCATTTTCTTTA+TGG + chr5_1:15191654-15191673 Msa0719730:intron 15.0%
!! ATAATTAGCCATTATTAATA+TGG + chr5_1:15191770-15191789 Msa0719730:intron 15.0%
!!! AGTATTATCCTTATTTTAAT+AGG - chr5_1:15191849-15191868 None:intergenic 15.0%
!!! TATAATAGTGTCATTTTTTA+TGG + chr5_1:15192958-15192977 Msa0719730:three_prime_UTR 15.0%
!! AATTAAGTGGTTATATAAAT+TGG + chr5_1:15193030-15193049 Msa0719730:three_prime_UTR 15.0%
!! AATAAGTCAAAATACATTAT+GGG + chr5_1:15193162-15193181 Msa0719730:three_prime_UTR 15.0%
!!! AATTATGTTTTGTTTCTTGA+AGG + chr5_1:15189753-15189772 Msa0719730:intron 20.0%
!!! TTAAGTTTTTTTATAGGTTC+TGG + chr5_1:15189810-15189829 Msa0719730:intron 20.0%
!!! CAATCTTTTTCTAACAAAAA+AGG - chr5_1:15190013-15190032 None:intergenic 20.0%
!! GTAAGATATATGAAATGATA+CGG + chr5_1:15190288-15190307 Msa0719730:intron 20.0%
!! ATATTTCATTTGTGTGTTTA+TGG + chr5_1:15190617-15190636 Msa0719730:intron 20.0%
!! GACAATTAATATTCTACTAT+TGG - chr5_1:15190683-15190702 None:intergenic 20.0%
!!! AAACTATTTTACATTGACAA+TGG - chr5_1:15191069-15191088 None:intergenic 20.0%
!!! TTTTATATCGGTTACAATAT+AGG - chr5_1:15191134-15191153 None:intergenic 20.0%
!!! CCATAGTTTTAATTACTAAA+GGG + chr5_1:15191478-15191497 Msa0719730:intron 20.0%
!!! TTCTAAAATGGGAAAAATAA+TGG - chr5_1:15191544-15191563 None:intergenic 20.0%
!!! TTATTTTTCCCATTTTAGAA+AGG + chr5_1:15191544-15191563 Msa0719730:intron 20.0%
!!! TTAGAAAGGTATAATTAATC+TGG + chr5_1:15191558-15191577 Msa0719730:intron 20.0%
!! AATTCATGCACAATAAATTA+AGG + chr5_1:15192111-15192130 Msa0719730:intron 20.0%
!! TAAGTTTACATATATTCACA+TGG - chr5_1:15192294-15192313 None:intergenic 20.0%
!! AAAATATTAGTAAGGTAAGT+AGG - chr5_1:15192324-15192343 None:intergenic 20.0%
!!! GATTAAACAAAATAGTGTTT+TGG + chr5_1:15193054-15193073 Msa0719730:three_prime_UTR 20.0%
!! GAATAAGTCAAAATACATTA+TGG + chr5_1:15193161-15193180 Msa0719730:three_prime_UTR 20.0%
! TTAATTGATAGGAAATCAAG+GGG - chr5_1:15189382-15189401 None:intergenic 25.0%
! GTTAATTGATAGGAAATCAA+GGG - chr5_1:15189383-15189402 None:intergenic 25.0%
! AGTTAATTGATAGGAAATCA+AGG - chr5_1:15189384-15189403 None:intergenic 25.0%
! TGATTTCCTATCAATTAACT+TGG + chr5_1:15189384-15189403 Msa0719730:five_prime_UTR 25.0%
! AAAGAACCAAGTTAATTGAT+AGG - chr5_1:15189393-15189412 None:intergenic 25.0%
!! GAAAATAGGAAATGAGTTTT+GGG - chr5_1:15189530-15189549 None:intergenic 25.0%
!! TGAAAATAGGAAATGAGTTT+TGG - chr5_1:15189531-15189550 None:intergenic 25.0%
! TCATCAAATATGTATCAACA+TGG + chr5_1:15189840-15189859 Msa0719730:CDS 25.0%
!! AGTTAAACTTTCCTTTTACT+TGG + chr5_1:15190075-15190094 Msa0719730:intron 25.0%
! ACAAGCAAAGTCAATTATTA+CGG + chr5_1:15190116-15190135 Msa0719730:intron 25.0%
!!! AAACTTTGAGGTAAACAAAT+TGG - chr5_1:15190157-15190176 None:intergenic 25.0%
!! TTACCTCAAAGTTTTCAAAA+AGG + chr5_1:15190163-15190182 Msa0719730:intron 25.0%
!!! TTTCCTTTTTGAAAACTTTG+AGG - chr5_1:15190169-15190188 None:intergenic 25.0%
!! TTGTTATTACAGACATCAAA+CGG + chr5_1:15190355-15190374 Msa0719730:intron 25.0%
! ATCATAGATATAGCATTCTT+TGG + chr5_1:15190536-15190555 Msa0719730:intron 25.0%
!!! TTATGGTATACTTCAAGTTT+TGG + chr5_1:15190634-15190653 Msa0719730:intron 25.0%
!! CTTTTGGATTTTACCATAAT+CGG + chr5_1:15190864-15190883 Msa0719730:intron 25.0%
! TTTAAAAGGTAATCCGATTA+TGG - chr5_1:15190880-15190899 None:intergenic 25.0%
! TGATAATATGACTCTAACTT+AGG - chr5_1:15190939-15190958 None:intergenic 25.0%
!! TATTTTACATTGACAATGGA+AGG - chr5_1:15191065-15191084 None:intergenic 25.0%
! AAAAAAGAGGACAGTATTAT+TGG - chr5_1:15191222-15191241 None:intergenic 25.0%
! TTTCTTTCCTTATGTGTTTA+TGG + chr5_1:15191251-15191270 Msa0719730:intron 25.0%
!!! GCCATAGTTTTAATTACTAA+AGG + chr5_1:15191477-15191496 Msa0719730:intron 25.0%
! CCCTTTAGTAATTAAAACTA+TGG - chr5_1:15191481-15191500 None:intergenic 25.0%
! GTAAGAAACAAAATTCAAGT+TGG - chr5_1:15191597-15191616 None:intergenic 25.0%
!!! AAACTATCAATTCTAGAGTT+TGG - chr5_1:15191807-15191826 None:intergenic 25.0%
! TGTGAAAGCCTATTAAAATA+AGG + chr5_1:15191838-15191857 Msa0719730:intron 25.0%
! ATAAGGATAATACTAGATTG+TGG + chr5_1:15191855-15191874 Msa0719730:intron 25.0%
! TAAGGATAATACTAGATTGT+GGG + chr5_1:15191856-15191875 Msa0719730:intron 25.0%
! TTTAATTAGGTGGAACTAAT+GGG - chr5_1:15192237-15192256 None:intergenic 25.0%
!!! ACTAGATTTCGAGTTTAATT+AGG - chr5_1:15192250-15192269 None:intergenic 25.0%
! AATTAAACTCGAAATCTAGT+TGG + chr5_1:15192250-15192269 Msa0719730:intron 25.0%
!!! TCCTTTTGTTGTTGAATTTA+AGG + chr5_1:15192574-15192593 Msa0719730:CDS 25.0%
! TCCTTAAATTCAACAACAAA+AGG - chr5_1:15192578-15192597 None:intergenic 25.0%
! CTTATTGCTATGATACAATT+AGG + chr5_1:15192759-15192778 Msa0719730:CDS 25.0%
! CAGTAGGTAGAATATAAAAT+CGG + chr5_1:15193110-15193129 Msa0719730:three_prime_UTR 25.0%
GAACAAGAAAACAAAGAAAG+TGG + chr5_1:15189437-15189456 Msa0719730:five_prime_UTR 30.0%
! TAAACTTTCCTTTTACTTGG+TGG + chr5_1:15190078-15190097 Msa0719730:intron 30.0%
AAAATTCTCCACCAAGTAAA+AGG - chr5_1:15190089-15190108 None:intergenic 30.0%
! AATTGACTTTGCTTGTTCTT+TGG - chr5_1:15190112-15190131 None:intergenic 30.0%
!!! TTGTGTTGGAAGAGTTTTTT+TGG + chr5_1:15190217-15190236 Msa0719730:intron 30.0%
!!! TGTGTTGGAAGAGTTTTTTT+GGG + chr5_1:15190218-15190237 Msa0719730:intron 30.0%
ATCTATGATATCCTTTCGTT+GGG - chr5_1:15190525-15190544 None:intergenic 30.0%
TATCTATGATATCCTTTCGT+TGG - chr5_1:15190526-15190545 None:intergenic 30.0%
TAGATATAGCATTCTTTGGA+CGG + chr5_1:15190540-15190559 Msa0719730:intron 30.0%
AAGCCAAATAATCTAAGTTG+CGG - chr5_1:15190809-15190828 None:intergenic 30.0%
CGATTATGGTAAAATCCAAA+AGG - chr5_1:15190866-15190885 None:intergenic 30.0%
CAACTCTTCTAACATTATGT+TGG + chr5_1:15190957-15190976 Msa0719730:intron 30.0%
AAAACCTATGGAATTCTTGT+TGG - chr5_1:15191103-15191122 None:intergenic 30.0%
ACTAACATTCGATGAAACTT+AGG - chr5_1:15191175-15191194 None:intergenic 30.0%
TTCCTTATGTGTTTATGGAT+TGG + chr5_1:15191256-15191275 Msa0719730:intron 30.0%
AACCAATCCATAAACACATA+AGG - chr5_1:15191261-15191280 None:intergenic 30.0%
! TTCATGTTTGACTTAATGTG+AGG + chr5_1:15191367-15191386 Msa0719730:intron 30.0%
! TCATGTTTGACTTAATGTGA+GGG + chr5_1:15191368-15191387 Msa0719730:intron 30.0%
!!! ACTAAAGGGATTGTTTTAGA+TGG + chr5_1:15191492-15191511 Msa0719730:intron 30.0%
GAGAAGGACCATATTAATAA+TGG - chr5_1:15191781-15191800 None:intergenic 30.0%
! TTTTAATAGGCTTTCACATC+AGG - chr5_1:15191836-15191855 None:intergenic 30.0%
AAGGATAATACTAGATTGTG+GGG + chr5_1:15191857-15191876 Msa0719730:intron 30.0%
!! AACGTGTGCTTTTGTTTAAT+TGG - chr5_1:15192018-15192037 None:intergenic 30.0%
!!! TGCCAATTTTAATTGGACTT+TGG - chr5_1:15192060-15192079 None:intergenic 30.0%
!! CTAGTTGTGCCAATTTTAAT+TGG - chr5_1:15192067-15192086 None:intergenic 30.0%
ACTAGCTAGAACTTAGATAA+AGG + chr5_1:15192082-15192101 Msa0719730:intron 30.0%
GTTTAATTAGGTGGAACTAA+TGG - chr5_1:15192238-15192257 None:intergenic 30.0%
!! AGATTTCGAGTTTAATTAGG+TGG - chr5_1:15192247-15192266 None:intergenic 30.0%
ACATTGATGAAGTTCCAATT+AGG + chr5_1:15192423-15192442 Msa0719730:CDS 30.0%
CATTGATGAAGTTCCAATTA+GGG + chr5_1:15192424-15192443 Msa0719730:CDS 30.0%
AGAGTGTAATATTATTCCAG+CGG + chr5_1:15192799-15192818 Msa0719730:CDS 30.0%
AAACAAAGATTTAAGGAGAC+CGG + chr5_1:15192824-15192843 Msa0719730:CDS 30.0%
GATTGACGTAGATAATTAAG+TGG + chr5_1:15193017-15193036 Msa0719730:three_prime_UTR 30.0%
AGTCAAAATACATTATGGGA+CGG + chr5_1:15193166-15193185 Msa0719730:three_prime_UTR 30.0%
! GTTCTTGATCATTTTATGGT+TGG + chr5_1:15193188-15193207 Msa0719730:three_prime_UTR 30.0%
ATAGGAAATCAAGGGGATAT+TGG - chr5_1:15189375-15189394 None:intergenic 35.0%
CAAGAAAACAAAGAAAGTGG+AGG + chr5_1:15189440-15189459 Msa0719730:five_prime_UTR 35.0%
ATCATACCTTACGTTGTTGT+GGG + chr5_1:15189498-15189517 Msa0719730:CDS 35.0%
TGAGAATAACCATCGTTGAA+GGG - chr5_1:15189614-15189633 None:intergenic 35.0%
ATGAGAATAACCATCGTTGA+AGG - chr5_1:15189615-15189634 None:intergenic 35.0%
GATGGTTATTCTCATCTCTT+CGG + chr5_1:15189620-15189639 Msa0719730:CDS 35.0%
TTACCATCGAATTATACTGC+TGG + chr5_1:15189885-15189904 Msa0719730:CDS 35.0%
ATTCCAGCAGTATAATTCGA+TGG - chr5_1:15189891-15189910 None:intergenic 35.0%
CGGTTTCAAACAAACTTGTA+CGG + chr5_1:15190448-15190467 Msa0719730:intron 35.0%
CAAACAAACTTGTACGGAAA+TGG + chr5_1:15190454-15190473 Msa0719730:intron 35.0%
GACCACACAAGTTTAGTATT+GGG - chr5_1:15190661-15190680 None:intergenic 35.0%
TCTCCGCAACTTAGATTATT+TGG + chr5_1:15190803-15190822 Msa0719730:intron 35.0%
! TCACTCAAAAGTTAGTCTCA+TGG - chr5_1:15190833-15190852 None:intergenic 35.0%
TAGGCTTATGTGAAAACCTA+TGG - chr5_1:15191115-15191134 None:intergenic 35.0%
CTTGTGATTGCAAAAGTTTC+CGG + chr5_1:15191282-15191301 Msa0719730:intron 35.0%
TTGTGATTGCAAAAGTTTCC+GGG + chr5_1:15191283-15191302 Msa0719730:intron 35.0%
TATGTGTGTATTTGTGGCTT+TGG + chr5_1:15191306-15191325 Msa0719730:intron 35.0%
!! CTTTGGAGTAACTAATAACG+TGG + chr5_1:15191323-15191342 Msa0719730:intron 35.0%
! CATGTTTGACTTAATGTGAG+GGG + chr5_1:15191369-15191388 Msa0719730:intron 35.0%
! ATGTTTGACTTAATGTGAGG+GGG + chr5_1:15191370-15191389 Msa0719730:intron 35.0%
! AGATGGTAGTGATGATACTT+TGG + chr5_1:15191509-15191528 Msa0719730:intron 35.0%
! AACAAAAGCACACGTTAGTT+AGG + chr5_1:15192022-15192041 Msa0719730:intron 35.0%
GGCCAAAGTCCAATTAAAAT+TGG + chr5_1:15192055-15192074 Msa0719730:intron 35.0%
GTGTTAAGAAGTGAGGAAAT+GGG + chr5_1:15192449-15192468 Msa0719730:CDS 35.0%
CATATGGGATGCATCAAATT+GGG + chr5_1:15192511-15192530 Msa0719730:CDS 35.0%
TTGTCGGATACTTCTTGAAT+TGG - chr5_1:15192629-15192648 None:intergenic 35.0%
!! TTCAAGATGAACGTTTTGGT+CGG - chr5_1:15192663-15192682 None:intergenic 35.0%
AAGAGTAGTACATGAAACGT+TGG - chr5_1:15192742-15192761 None:intergenic 35.0%
ATAATATTACACTCTGGTGG+TGG - chr5_1:15192794-15192813 None:intergenic 35.0%
GGAATAATATTACACTCTGG+TGG - chr5_1:15192797-15192816 None:intergenic 35.0%
GCTGGAATAATATTACACTC+TGG - chr5_1:15192800-15192819 None:intergenic 35.0%
! TTAAATCTTTGTTTCTCCGC+TGG - chr5_1:15192818-15192837 None:intergenic 35.0%
AGCGGAGAAACAAAGATTTA+AGG + chr5_1:15192817-15192836 Msa0719730:CDS 35.0%
TCATCACATATCACCTTGAT+CGG - chr5_1:15192924-15192943 None:intergenic 35.0%
!! TTAGTGTGTGTTGTTTCAGT+AGG + chr5_1:15193094-15193113 Msa0719730:three_prime_UTR 35.0%
! GACGGTTCTTGATCATTTTA+TGG + chr5_1:15193184-15193203 Msa0719730:three_prime_UTR 35.0%
!! GGGGATATTGGTCTTTGATT+GGG - chr5_1:15189363-15189382 None:intergenic 40.0%
!! AGGGGATATTGGTCTTTGAT+TGG - chr5_1:15189364-15189383 None:intergenic 40.0%
CATCATACCTTACGTTGTTG+TGG + chr5_1:15189497-15189516 Msa0719730:CDS 40.0%
TATGTTCCCACAACAACGTA+AGG - chr5_1:15189507-15189526 None:intergenic 40.0%
ATAACCATCGTTGAAGGGTA+TGG - chr5_1:15189609-15189628 None:intergenic 40.0%
TATTCTCATCTCTTCGGAGA+TGG + chr5_1:15189626-15189645 Msa0719730:CDS 40.0%
CTCAAAATCCAACTCATCGT+GGG - chr5_1:15190398-15190417 None:intergenic 40.0%
ACTCAAAATCCAACTCATCG+TGG - chr5_1:15190399-15190418 None:intergenic 40.0%
!!! GAGTTGGATTTTGAGTTCCT+AGG + chr5_1:15190403-15190422 Msa0719730:intron 40.0%
! GTTTTCCAGCTATGTTACCT+AGG - chr5_1:15190423-15190442 None:intergenic 40.0%
GTAACATAGCTGGAAAACCA+TGG + chr5_1:15190425-15190444 Msa0719730:intron 40.0%
! AAGTTTGTTTGAAACCGCCA+TGG - chr5_1:15190445-15190464 None:intergenic 40.0%
GACCCAATACTAAACTTGTG+TGG + chr5_1:15190656-15190675 Msa0719730:intron 40.0%
GGACCACACAAGTTTAGTAT+TGG - chr5_1:15190662-15190681 None:intergenic 40.0%
! AGTGACAACTTTGCTCCTTT+TGG + chr5_1:15190848-15190867 Msa0719730:intron 40.0%
ATGGAATTCTTGTTGGACGT+CGG - chr5_1:15191096-15191115 None:intergenic 40.0%
ACGTCCAACAAGAATTCCAT+AGG + chr5_1:15191096-15191115 Msa0719730:intron 40.0%
CGTGGTATGTTATGAGATTG+AGG + chr5_1:15191341-15191360 Msa0719730:intron 40.0%
! TGTTTGACTTAATGTGAGGG+GGG + chr5_1:15191371-15191390 Msa0719730:intron 40.0%
!! GAAAAGTGTTTCTTGCGTGT+GGG + chr5_1:15191393-15191412 Msa0719730:intron 40.0%
TGAGTATGTGTGAGCTAACA+AGG + chr5_1:15191447-15191466 Msa0719730:intron 40.0%
TATGTGTGAGCTAACAAGGA+TGG + chr5_1:15191451-15191470 Msa0719730:intron 40.0%
!! TTCTAGAGTTTGGCATGAGA+AGG - chr5_1:15191797-15191816 None:intergenic 40.0%
CGTTAGTTAGGAGCTTATGT+TGG + chr5_1:15192034-15192053 Msa0719730:intron 40.0%
GGAATCTATGAGTTTGCGTT+TGG - chr5_1:15192194-15192213 None:intergenic 40.0%
TGATGAAGTTCCAATTAGGG+AGG + chr5_1:15192427-15192446 Msa0719730:CDS 40.0%
CTTCTTAACACCTCCCTAAT+TGG - chr5_1:15192440-15192459 None:intergenic 40.0%
GGTGTTAAGAAGTGAGGAAA+TGG + chr5_1:15192448-15192467 Msa0719730:CDS 40.0%
TTAAGAAGTGAGGAAATGGG+AGG + chr5_1:15192452-15192471 Msa0719730:CDS 40.0%
!! ACAATGACATTGGCTTGACT+GGG - chr5_1:15192484-15192503 None:intergenic 40.0%
!! TACAATGACATTGGCTTGAC+TGG - chr5_1:15192485-15192504 None:intergenic 40.0%
ATGGTCGCATACAATGACAT+TGG - chr5_1:15192494-15192513 None:intergenic 40.0%
TGTCATTGTATGCGACCATA+TGG + chr5_1:15192495-15192514 Msa0719730:CDS 40.0%
GTCATTGTATGCGACCATAT+GGG + chr5_1:15192496-15192515 Msa0719730:CDS 40.0%
CCAATTTGATGCATCCCATA+TGG - chr5_1:15192513-15192532 None:intergenic 40.0%
CCATATGGGATGCATCAAAT+TGG + chr5_1:15192510-15192529 Msa0719730:CDS 40.0%
TGCATCAAATTGGGCAACAT+CGG + chr5_1:15192520-15192539 Msa0719730:CDS 40.0%
TTTAAGGACCTAGTCCTCAA+AGG + chr5_1:15192590-15192609 Msa0719730:CDS 40.0%
GATCAACTGAACAACCTTTG+AGG - chr5_1:15192607-15192626 None:intergenic 40.0%
! GAGCTTCAAGATGAACGTTT+TGG - chr5_1:15192667-15192686 None:intergenic 40.0%
AGTAGTACATGAAACGTTGG+CGG - chr5_1:15192739-15192758 None:intergenic 40.0%
AAAGATTTAAGGAGACCGGA+AGG + chr5_1:15192828-15192847 Msa0719730:CDS 40.0%
TCCACCAAATTTCAACCTTC+CGG - chr5_1:15192846-15192865 None:intergenic 40.0%
AATTACCGGTGTAACGATCG+AGG - chr5_1:15189694-15189713 None:intergenic 45.0%
TGAGAAAACCCACGATGAGT+TGG + chr5_1:15190387-15190406 Msa0719730:intron 45.0%
GAGTTCCTAGGTAACATAGC+TGG + chr5_1:15190415-15190434 Msa0719730:intron 45.0%
ACATAGCTGGAAAACCATGG+CGG + chr5_1:15190428-15190447 Msa0719730:intron 45.0%
GTGAGGAACGTTATCGTCTT+TGG + chr5_1:15190494-15190513 Msa0719730:intron 45.0%
TCCGGGTATGTGTGTATTTG+TGG + chr5_1:15191300-15191319 Msa0719730:intron 45.0%
GCCACAAATACACACATACC+CGG - chr5_1:15191304-15191323 None:intergenic 45.0%
!! GGAAAAGTGTTTCTTGCGTG+TGG + chr5_1:15191392-15191411 Msa0719730:intron 45.0%
ATTAATCTGGCCCACACTCA+TGG + chr5_1:15191571-15191590 Msa0719730:intron 45.0%
!! TTCAAGTTGGCCATGAGTGT+GGG - chr5_1:15191584-15191603 None:intergenic 45.0%
!! ATTCAAGTTGGCCATGAGTG+TGG - chr5_1:15191585-15191604 None:intergenic 45.0%
!! GACTTGGTTTGGCAAATGGT+AGG - chr5_1:15192215-15192234 None:intergenic 45.0%
!! ATGGGACTTGGTTTGGCAAA+TGG - chr5_1:15192219-15192238 None:intergenic 45.0%
! GGAACTAATGGGACTTGGTT+TGG - chr5_1:15192226-15192245 None:intergenic 45.0%
TAGGTGGAACTAATGGGACT+TGG - chr5_1:15192231-15192250 None:intergenic 45.0%
!! TAGGGAGGTGTTAAGAAGTG+AGG + chr5_1:15192442-15192461 Msa0719730:CDS 45.0%
GCATCAAATTGGGCAACATC+GGG + chr5_1:15192521-15192540 Msa0719730:CDS 45.0%
! CTGAACAACCTTTGAGGACT+AGG - chr5_1:15192601-15192620 None:intergenic 45.0%
!! TACACTCTGGTGGTGGTATA+TGG - chr5_1:15192787-15192806 None:intergenic 45.0%
GAGACCGGAAGGTTGAAATT+TGG + chr5_1:15192839-15192858 Msa0719730:CDS 45.0%
ACCGGAAGGTTGAAATTTGG+TGG + chr5_1:15192842-15192861 Msa0719730:CDS 45.0%
!!! TATTTTTTTTTAGAAAAAAA+AGG + chr5_1:15190251-15190270 Msa0719730:intron 5.0%
!!! AATATTTTGTTAAATAAATT+TGG + chr5_1:15192336-15192355 Msa0719730:intron 5.0%
!!! ATATTTTGTTAAATAAATTT+GGG + chr5_1:15192337-15192356 Msa0719730:intron 5.0%
!!! TTTTTACATATAAAATAAAA+AGG - chr5_1:15193225-15193244 None:intergenic 5.0%
! CGTTGAAGGGTATGGTTGCA+AGG - chr5_1:15189601-15189620 None:intergenic 50.0%
GCAACCATACCCTTCAACGA+TGG + chr5_1:15189602-15189621 Msa0719730:CDS 50.0%
GTTCGTTCCTCCGATAGCAA+CGG + chr5_1:15189656-15189675 Msa0719730:CDS 50.0%
GAGTTGGACACCGTTGCTAT+CGG - chr5_1:15189669-15189688 None:intergenic 50.0%
TGTAACGATCGAGGAGGAGT+TGG - chr5_1:15189685-15189704 None:intergenic 50.0%
!! GGAAATGGAAGCACTCATCG+TGG + chr5_1:15190469-15190488 Msa0719730:intron 50.0%
! CTTTGGTTCGACCCAACGAA+AGG + chr5_1:15190511-15190530 Msa0719730:intron 50.0%
TCAAATTGGGCAACATCGGG+TGG + chr5_1:15192524-15192543 Msa0719730:CDS 50.0%
!! CCTTGATCGGTGTCATCTAC+CGG - chr5_1:15192911-15192930 None:intergenic 50.0%
TTGGACACCGTTGCTATCGG+AGG - chr5_1:15189666-15189685 None:intergenic 55.0%
CTCCTCCTCGATCGTTACAC+CGG + chr5_1:15189686-15189705 Msa0719730:CDS 55.0%
TACCGGTGTAACGATCGAGG+AGG - chr5_1:15189691-15189710 None:intergenic 55.0%
AAGCACTCATCGTGGACGTG+AGG + chr5_1:15190477-15190496 Msa0719730:intron 55.0%
GTCGGAGCAAACGTCGTTGT+CGG - chr5_1:15192645-15192664 None:intergenic 55.0%
GGGTGGTCGTACTTCAACTC+CGG + chr5_1:15192889-15192908 Msa0719730:CDS 55.0%
CCGGTAGATGACACCGATCA+AGG + chr5_1:15192908-15192927 Msa0719730:CDS 55.0%
GGAACCTTCGCATTGCGAGG+CGG - chr5_1:15192718-15192737 None:intergenic 60.0%
GAAGCCACCGCCGACATTCT+AGG + chr5_1:15192864-15192883 Msa0719730:CDS 60.0%
GACCACCCCGCCTAGAATGT+CGG - chr5_1:15192877-15192896 None:intergenic 60.0%
GGCGGAACCTTCGCATTGCG+AGG - chr5_1:15192721-15192740 None:intergenic 65.0%
GCCACCGCCGACATTCTAGG+CGG + chr5_1:15192867-15192886 Msa0719730:CDS 65.0%
CCACCGCCGACATTCTAGGC+GGG + chr5_1:15192868-15192887 Msa0719730:CDS 65.0%
CACCGCCGACATTCTAGGCG+GGG + chr5_1:15192869-15192888 Msa0719730:CDS 65.0%
CACCCCGCCTAGAATGTCGG+CGG - chr5_1:15192874-15192893 None:intergenic 65.0%
GCGGCGCATGGGGGTCACAT+TGG - chr5_1:15192699-15192718 None:intergenic 70.0%
CATTGCGAGGCGGCGCATGG+GGG - chr5_1:15192708-15192727 None:intergenic 70.0%
GCATTGCGAGGCGGCGCATG+GGG - chr5_1:15192709-15192728 None:intergenic 70.0%
CGCATTGCGAGGCGGCGCAT+GGG - chr5_1:15192710-15192729 None:intergenic 70.0%
TCGCATTGCGAGGCGGCGCA+TGG - chr5_1:15192711-15192730 None:intergenic 70.0%
TGCGCCGCCTCGCAATGCGA+AGG + chr5_1:15192711-15192730 Msa0719730:CDS 70.0%
CCCGCCTAGAATGTCGGCGG+TGG - chr5_1:15192871-15192890 None:intergenic 70.0%
CGCCGACATTCTAGGCGGGG+TGG + chr5_1:15192872-15192891 Msa0719730:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 15189340 15193254 15189340 ID=Msa0719730;Name=Msa0719730
chr5_1 mRNA 15189340 15193254 15189340 ID=Msa0719730-mRNA-1;Parent=Msa0719730;Name=Msa0719730-mRNA-1;_AED=0.11;_eAED=0.11;_QI=151|0.5|0.66|1|0.5|0.66|3|314|277
chr5_1 exon 15189340 15189707 15189340 ID=Msa0719730-mRNA-1:exon:5898;Parent=Msa0719730-mRNA-1
chr5_1 exon 15189826 15189919 15189826 ID=Msa0719730-mRNA-1:exon:5899;Parent=Msa0719730-mRNA-1
chr5_1 exon 15192418 15193254 15192418 ID=Msa0719730-mRNA-1:exon:5900;Parent=Msa0719730-mRNA-1
chr5_1 five_prime_UTR 15189340 15189490 15189340 ID=Msa0719730-mRNA-1:five_prime_utr;Parent=Msa0719730-mRNA-1
chr5_1 CDS 15189491 15189707 15189491 ID=Msa0719730-mRNA-1:cds;Parent=Msa0719730-mRNA-1
chr5_1 CDS 15189826 15189919 15189826 ID=Msa0719730-mRNA-1:cds;Parent=Msa0719730-mRNA-1
chr5_1 CDS 15192418 15192940 15192418 ID=Msa0719730-mRNA-1:cds;Parent=Msa0719730-mRNA-1
chr5_1 three_prime_UTR 15192941 15193254 15192941 ID=Msa0719730-mRNA-1:three_prime_utr;Parent=Msa0719730-mRNA-1
Gene Sequence

>Msa0719730

ATGAATCATCATACCTTACGTTGTTGTGGGAACATACCCAAAACTCATTTCCTATTTTCATTTTTTTCTCTATTTCTTCTCTTCAGTTTCACAAACTCAGCTTTCGACCTTGCAACCATACCCTTCAACGATGGTTATTCTCATCTCTTCGGAGATGGCAACGTTGTTCGTTCCTCCGATAGCAACGGTGTCCAACTCCTCCTCGATCGTTACACCGGTTCTGGTTTTATTTCATCAAATATGTATCAACATGGATTCTTCAGCGCAAATATCAAGTTACCATCGAATTATACTGCTGGAATTTGTGTTGCATTTTACATTGATGAAGTTCCAATTAGGGAGGTGTTAAGAAGTGAGGAAATGGGAGGTGAATACCCAGTCAAGCCAATGTCATTGTATGCGACCATATGGGATGCATCAAATTGGGCAACATCGGGTGGAAAATACAAAGTAAATTATAAATATGCTCCTTTTGTTGTTGAATTTAAGGACCTAGTCCTCAAAGGTTGTTCAGTTGATCCAATTCAAGAAGTATCCGACAACGACGTTTGCTCCGACCAAAACGTTCATCTTGAAGCTCAAGACTATGCCAATGTGACCCCCATGCGCCGCCTCGCAATGCGAAGGTTCCGCCAACGTTTCATGTACTACTCTTATTGCTATGATACAATTAGGTACCATATACCACCACCAGAGTGTAATATTATTCCAGCGGAGAAACAAAGATTTAAGGAGACCGGAAGGTTGAAATTTGGTGGAAGCCACCGCCGACATTCTAGGCGGGGTGGTCGTACTTCAACTCCGGTAGATGACACCGATCAAGGTGATATGTGA
Protein sequence

>Msa0719730

MNHHTLRCCGNIPKTHFLFSFFSLFLLFSFTNSAFDLATIPFNDGYSHLFGDGNVVRSSDSNGVQLLLDRYTGSGFISSNMYQHGFFSANIKLPSNYTAGICVAFYIDEVPIREVLRSEEMGGEYPVKPMSLYATIWDASNWATSGGKYKVNYKYAPFVVEFKDLVLKGCSVDPIQEVSDNDVCSDQNVHLEAQDYANVTPMRRLAMRRFRQRFMYYSYCYDTIRYHIPPPECNIIPAEKQRFKETGRLKFGGSHRRHSRRGGRTSTPVDDTDQGDM*