AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0802740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0802740 MtrunA17_Chr5g0410621 70.487 349 31 3 1 277 1 349 6.01e-145 410
Msa0802740 MtrunA17_Chr8g0382041 39.931 288 96 5 36 250 28 311 6.19e-63 201
Msa0802740 MtrunA17_Chr8g0375981 51.974 152 65 3 103 252 164 309 3.56e-53 176
Msa0802740 MtrunA17_Chr1g0161951 52.201 159 70 3 103 260 166 319 5.55e-51 170
Msa0802740 MtrunA17_Chr1g0161951 52.747 91 42 1 17 107 9 98 3.14e-24 99.8
Msa0802740 MtrunA17_Chr8g0365231 46.667 135 65 3 103 233 179 310 4.77e-34 125
Msa0802740 MtrunA17_Chr8g0365231 36.538 104 46 2 22 107 10 111 4.05e-11 62.4
Msa0802740 MtrunA17_Chr4g0028221 38.168 131 71 2 103 233 184 304 1.09e-26 105
Msa0802740 MtrunA17_Chr8g0340001 32.061 131 85 1 103 233 105 231 1.58e-22 93.2
Msa0802740 MtrunA17_Chr2g0327411 34.351 131 77 3 103 233 188 309 7.40e-22 92.8
Msa0802740 MtrunA17_Chr4g0054431 28.992 238 142 6 9 233 64 287 6.78e-21 89.7
Msa0802740 MtrunA17_Chr4g0054451 28.992 238 142 6 9 233 66 289 7.13e-21 89.7
Msa0802740 MtrunA17_Chr1g0180451 26.333 300 128 7 17 233 5 294 4.61e-20 87.8
Msa0802740 MtrunA17_Chr6g0461761 32.836 134 81 4 103 233 160 287 1.14e-19 86.7
Msa0802740 MtrunA17_Chr7g0252631 30.597 134 86 3 103 234 160 288 3.29e-19 85.1
Msa0802740 MtrunA17_Chr7g0252621 30.597 134 86 3 103 234 160 288 3.75e-19 85.1
Msa0802740 MtrunA17_Chr7g0264731 34.091 132 77 2 103 234 171 292 7.33e-19 84.3
Msa0802740 MtrunA17_Chr7g0252601 30.597 134 84 4 103 233 160 287 4.64e-18 82.0
Msa0802740 MtrunA17_Chr2g0323161 31.618 136 88 3 103 233 151 286 5.04e-18 82.0
Msa0802740 MtrunA17_Chr1g0206081 30.216 139 91 3 103 239 166 300 5.92e-18 82.0
Msa0802740 MtrunA17_Chr6g0461731 32.090 134 82 4 103 233 183 310 7.16e-18 82.0
Msa0802740 MtrunA17_Chr4g0023961 33.088 136 86 3 103 233 153 288 7.79e-18 81.6
Msa0802740 MtrunA17_Chr6g0486581 33.083 133 86 3 103 233 152 283 1.49e-16 77.8
Msa0802740 MtrunA17_Chr4g0072681 28.358 134 94 2 103 234 111 244 2.93e-15 73.6
Msa0802740 MtrunA17_Chr4g0072601 33.083 133 82 3 103 233 156 283 1.22e-14 72.4
Msa0802740 MtrunA17_Chr1g0206681 27.941 136 91 4 103 235 162 293 1.84e-14 72.0
Msa0802740 MtrunA17_Chr4g0071341 30.370 135 88 4 103 235 153 283 4.69e-14 70.9
Msa0802740 MtrunA17_Chr8g0390201 31.111 135 86 5 103 233 78 209 4.82e-14 69.7
Msa0802740 MtrunA17_Chr3g0096651 30.075 133 83 4 103 233 158 282 1.23e-13 69.7
Msa0802740 MtrunA17_Chr4g0072611 29.630 135 88 4 103 235 153 282 4.88e-13 67.8
Msa0802740 MtrunA17_Chr7g0258911 29.412 136 89 4 103 236 152 282 6.70e-13 67.4
Msa0802740 MtrunA17_Chr7g0235541 26.316 133 89 3 103 235 86 209 2.00e-12 65.1
Msa0802740 MtrunA17_Chr4g0072641 29.927 137 74 6 100 233 31 148 2.64e-12 63.2
Msa0802740 MtrunA17_Chr2g0303721 24.444 135 91 4 103 237 151 274 7.22e-12 64.3
Msa0802740 MtrunA17_Chr2g0303861 34.579 107 68 1 19 123 6 112 7.79e-12 64.3
Msa0802740 MtrunA17_Chr2g0303861 26.891 119 78 4 103 220 158 268 7.85e-11 61.2
Msa0802740 MtrunA17_Chr3g0122031 29.787 141 81 5 103 242 156 279 1.81e-11 63.2
Msa0802740 MtrunA17_Chr3g0122021 29.787 141 81 5 103 242 156 279 2.10e-11 63.2
Msa0802740 MtrunA17_Chr8g0374231 28.829 111 74 2 130 239 1 107 3.27e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0802740 AT1G32170.1 68.627 153 46 1 103 255 165 315 5.64e-74 230
Msa0802740 AT1G32170.1 56.250 96 41 1 12 106 1 96 1.86e-25 103
Msa0802740 AT4G18990.2 57.927 164 60 1 103 257 99 262 5.68e-66 207
Msa0802740 AT4G18990.1 58.642 162 58 1 103 255 173 334 7.32e-65 207
Msa0802740 AT4G18990.1 67.606 71 23 0 36 106 34 104 1.30e-24 101
Msa0802740 AT2G01850.1 48.837 172 83 2 103 273 164 331 8.91e-52 172
Msa0802740 AT2G01850.1 54.762 84 35 1 27 107 13 96 5.12e-21 91.3
Msa0802740 AT1G14720.1 46.784 171 87 1 103 273 164 330 2.31e-49 166
Msa0802740 AT1G14720.1 46.809 94 47 1 17 107 3 96 4.29e-22 94.4
Msa0802740 AT1G10550.1 42.029 138 73 2 103 234 174 310 1.85e-31 119
Msa0802740 AT4G13080.1 26.644 289 133 7 18 233 9 291 1.63e-28 110
Msa0802740 AT4G13090.1 37.405 131 80 1 103 233 160 288 1.70e-28 110
Msa0802740 AT3G25050.1 35.878 131 80 2 103 233 163 289 2.39e-27 107
Msa0802740 AT3G44990.1 36.641 131 73 2 103 233 173 293 2.55e-23 97.1
Msa0802740 AT4G37800.1 36.090 133 79 2 103 234 163 290 3.13e-23 96.7
Msa0802740 AT5G13870.2 32.836 134 81 4 103 233 160 287 1.43e-22 94.7
Msa0802740 AT5G13870.1 32.836 134 81 4 103 233 160 287 1.43e-22 94.7
Msa0802740 AT5G13870.3 32.836 134 81 4 103 233 160 287 1.43e-22 94.7
Msa0802740 AT5G65730.1 36.090 133 77 3 103 233 164 290 2.10e-21 91.7
Msa0802740 AT2G06850.2 29.323 133 87 3 103 233 103 230 3.91e-20 87.0
Msa0802740 AT2G06850.1 29.323 133 87 3 103 233 163 290 1.17e-19 87.0
Msa0802740 AT2G36870.1 35.338 133 72 3 103 233 177 297 2.49e-19 86.3
Msa0802740 AT4G28850.1 34.058 138 81 5 103 234 155 288 3.08e-18 82.8
Msa0802740 AT4G03210.2 30.075 133 90 2 103 234 127 257 7.10e-18 81.3
Msa0802740 AT4G03210.1 30.075 133 90 2 103 234 155 285 1.31e-17 81.3
Msa0802740 AT4G30290.1 32.090 134 80 4 103 234 153 277 1.98e-17 80.5
Msa0802740 AT1G11545.1 31.655 139 87 4 103 237 169 303 3.89e-17 80.1
Msa0802740 AT3G23730.1 32.836 134 85 4 103 233 155 286 3.76e-16 77.0
Msa0802740 AT5G57550.1 30.370 135 80 4 103 233 158 282 3.98e-16 77.0
Msa0802740 AT4G30280.1 31.343 134 81 4 103 234 158 282 3.49e-15 74.3
Msa0802740 AT5G48070.1 29.851 134 83 4 103 234 158 282 3.89e-15 73.9
Msa0802740 AT2G14620.1 27.007 137 91 4 103 235 165 296 9.45e-15 73.2
Msa0802740 AT2G14620.3 27.007 137 91 4 103 235 104 235 9.65e-15 72.4
Msa0802740 AT2G14620.2 27.007 137 91 4 103 235 115 246 1.02e-14 72.4
Msa0802740 AT4G14130.1 32.117 137 79 5 103 233 156 284 1.92e-14 72.4
Msa0802740 AT2G18800.1 30.496 141 88 4 103 233 156 296 2.92e-14 72.0
Msa0802740 AT5G57560.1 29.323 133 90 3 103 233 151 281 3.03e-14 71.6
Msa0802740 AT1G65310.1 30.075 133 82 4 103 233 158 281 4.56e-14 71.2
Msa0802740 AT1G65310.2 30.075 133 82 4 103 233 180 303 6.22e-14 70.9
Msa0802740 AT5G57540.1 28.671 143 79 4 103 235 154 283 9.09e-14 70.1
Msa0802740 AT5G57530.1 30.882 136 85 5 103 235 155 284 2.77e-13 68.9
Msa0802740 AT4G25810.1 29.323 133 89 3 103 233 154 283 7.18e-13 67.8
Msa0802740 AT4G30270.1 27.820 133 75 4 103 233 152 265 8.33e-13 67.4
Msa0802740 AT4G25820.1 27.737 137 92 4 101 235 156 287 5.12e-12 65.1

Find 100 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTAACACCTCCCTAAT+TGG 0.183555 5_3:-17358810 None:intergenic
AGAAAATAGGAAATGAGTTT+TGG 0.222400 5_3:-17355904 None:intergenic
AATTAAGTGGTTATATAAAT+TGG 0.236135 5_3:+17359403 Msa0802740:three_prime_UTR
AGCGGAGAAACAAAGATTTA+AGG 0.248971 5_3:+17359190 Msa0802740:CDS
ACATTGATGAAGTTCCAATT+AGG 0.258577 5_3:+17358796 Msa0802740:CDS
CCATATGGGATGCATCAAAT+TGG 0.259813 5_3:+17358883 Msa0802740:CDS
CTTATTGCTATGATACAATT+AGG 0.266532 5_3:+17359132 Msa0802740:CDS
GAATAAGTCAAAATACATTA+TGG 0.269567 5_3:+17359534 Msa0802740:three_prime_UTR
TACACTCTGGTGGTGGTATA+TGG 0.307094 5_3:-17359157 None:intergenic
TACAATGACATTGGCTTGAC+TGG 0.309723 5_3:-17358855 None:intergenic
GAGACCGGAAGGTTGAAATT+TGG 0.317179 5_3:+17359212 Msa0802740:CDS
TCCACCAAATTTCAACCTTC+CGG 0.321360 5_3:-17359216 None:intergenic
CATTGATGAAGTTCCAATTA+GGG 0.352975 5_3:+17358797 Msa0802740:CDS
CGCATTGCGAGGCGGCGCAT+GGG 0.354309 5_3:-17359080 None:intergenic
GGTGTTAAGAAGTGAGGAAA+TGG 0.365576 5_3:+17358821 Msa0802740:CDS
TTGTCGGATACTTCTTGAAT+TGG 0.369307 5_3:-17358999 None:intergenic
GGGGATATTGGTCTTTGATT+GGG 0.370455 5_3:-17355735 None:intergenic
TCGCATTGCGAGGCGGCGCA+TGG 0.371340 5_3:-17359081 None:intergenic
GAGCTTCAAGATGAACGTTT+TGG 0.373175 5_3:-17359037 None:intergenic
AGGGGATATTGGTCTTTGAT+TGG 0.373988 5_3:-17355736 None:intergenic
TGTCATTGTATGCGACCATA+TGG 0.384464 5_3:+17358868 Msa0802740:CDS
GAAGCCACCGCCGACATTCT+AGG 0.386095 5_3:+17359237 Msa0802740:CDS
GATTAAACAAAATAGTGTTT+TGG 0.401466 5_3:+17359427 Msa0802740:three_prime_UTR
CCAATTTGATGCATCCCATA+TGG 0.416702 5_3:-17358883 None:intergenic
CTGAACAACCTTTGAGGACT+AGG 0.425502 5_3:-17358971 None:intergenic
AATAAGTCAAAATACATTAT+GGG 0.425904 5_3:+17359535 Msa0802740:three_prime_UTR
GTCGGAGCAAACGTCGTTGT+CGG 0.428810 5_3:-17359015 None:intergenic
AAAGAACCAAGTTAATTGAT+AGG 0.447398 5_3:-17355765 None:intergenic
GAACAAGAAAACAAAGAAAG+TGG 0.447911 5_3:+17355812 Msa0802740:five_prime_UTR
ATAGGAAATCAAGGGGATAT+TGG 0.454739 5_3:-17355747 None:intergenic
TTAAATCTTTGTTTCTCCGC+TGG 0.456783 5_3:-17359188 None:intergenic
GATGGTTATTCTCATCTCTT+CGG 0.463358 5_3:+17355996 Msa0802740:CDS
ATCATACCTTACGTTGTTGT+GGG 0.467592 5_3:+17355874 Msa0802740:CDS
GATCAACTGAACAACCTTTG+AGG 0.468484 5_3:-17358977 None:intergenic
GCATTGCGAGGCGGCGCATG+GGG 0.468919 5_3:-17359079 None:intergenic
AACGTTGTTCGTTCCTCCGA+TGG 0.474311 5_3:+17356026 Msa0802740:CDS
GATTGACGTAGATAATTAAG+TGG 0.483079 5_3:+17359390 Msa0802740:three_prime_UTR
TCCTTAAATTCAACAACAAA+AGG 0.483638 5_3:-17358948 None:intergenic
GTGTTAAGAAGTGAGGAAAT+GGG 0.483994 5_3:+17358822 Msa0802740:CDS
CATATGGGATGCATCAAATT+GGG 0.485871 5_3:+17358884 Msa0802740:CDS
TGATTTCCTATCAATTAACT+TGG 0.487553 5_3:+17355759 Msa0802740:five_prime_UTR
GCATCAAATTGGGCAACATC+GGG 0.487694 5_3:+17358894 Msa0802740:CDS
AGTTAATTGATAGGAAATCA+AGG 0.489219 5_3:-17355756 None:intergenic
GCAACCATACCCTTCAATGA+TGG 0.489672 5_3:+17355978 Msa0802740:CDS
ATGAGAATAACCATCATTGA+AGG 0.494626 5_3:-17355988 None:intergenic
ACCGGAAGGTTGAAATTTGG+TGG 0.496307 5_3:+17359215 Msa0802740:CDS
CCTTGATCGGTGTCATCTAC+CGG 0.499492 5_3:-17359281 None:intergenic
CAGTAGGTAGAATATAAAAT+CGG 0.499546 5_3:+17359483 Msa0802740:three_prime_UTR
TGCATCAAATTGGGCAACAT+CGG 0.504906 5_3:+17358893 Msa0802740:CDS
TTAGTGTGTGTTGTTTCAGT+AGG 0.506200 5_3:+17359467 Msa0802740:three_prime_UTR
CATCATACCTTACGTTGTTG+TGG 0.506997 5_3:+17355873 Msa0802740:CDS
CCCGCCTAGAATGTCGGCGG+TGG 0.511235 5_3:-17359241 None:intergenic
GTTCGTTCCTCCGATGGCAA+CGG 0.511531 5_3:+17356032 Msa0802740:CDS
TATTCTCATCTCTTCGGAGA+TGG 0.518704 5_3:+17356002 Msa0802740:CDS
AAACAAAGATTTAAGGAGAC+CGG 0.526680 5_3:+17359197 Msa0802740:CDS
TTACCATCGAATTATACTGC+TGG 0.532109 5_3:+17356260 Msa0802740:CDS
GGCGGAACCTTCGCATTGCG+AGG 0.537482 5_3:-17359091 None:intergenic
CCACCGCCGACATTCTAGGC+GGG 0.539580 5_3:+17359241 Msa0802740:CDS
ATAACCATCATTGAAGGGTA+TGG 0.540096 5_3:-17355982 None:intergenic
TGTAACGATCGAGGAGGAGT+TGG 0.545650 5_3:-17356058 None:intergenic
TAGGGAGGTGTTAAGAAGTG+AGG 0.547833 5_3:+17358815 Msa0802740:CDS
TCATCACATATCACCTTGAT+CGG 0.551054 5_3:-17359294 None:intergenic
CTCCTCCTCGATCGTTACAC+CGG 0.556457 5_3:+17356062 Msa0802740:CDS
CCGGTAGATGACACCGATCA+AGG 0.556925 5_3:+17359281 Msa0802740:CDS
GTTAATTGATAGGAAATCAA+GGG 0.558166 5_3:-17355755 None:intergenic
TGCGCCGCCTCGCAATGCGA+AGG 0.560204 5_3:+17359084 Msa0802740:CDS
CATTGAAGGGTATGGTTGCA+AGG 0.562725 5_3:-17355974 None:intergenic
TCAAATTGGGCAACATCGGG+TGG 0.571083 5_3:+17358897 Msa0802740:CDS
CAAGAAAACAAAGAAAGTGG+AGG 0.571223 5_3:+17355815 Msa0802740:five_prime_UTR
GAGTTGGACACCGTTGCCAT+CGG 0.573412 5_3:-17356042 None:intergenic
GGGTGGTCGTACTTCAACTC+CGG 0.575069 5_3:+17359262 Msa0802740:CDS
CACCGCCGACATTCTAGGCG+GGG 0.578126 5_3:+17359242 Msa0802740:CDS
TTTAAGGACCTAGTCCTCAA+AGG 0.590319 5_3:+17358963 Msa0802740:CDS
TATGTTCCCACAACAACGTA+AGG 0.595015 5_3:-17355880 None:intergenic
ATAATATTACACTCTGGTGG+TGG 0.597029 5_3:-17359164 None:intergenic
GGAACCTTCGCATTGCGAGG+CGG 0.602262 5_3:-17359088 None:intergenic
GACCACCCCGCCTAGAATGT+CGG 0.605547 5_3:-17359247 None:intergenic
ACAATGACATTGGCTTGACT+GGG 0.607221 5_3:-17358854 None:intergenic
CATTGCGAGGCGGCGCATGG+GGG 0.608687 5_3:-17359078 None:intergenic
TTGGACACCGTTGCCATCGG+AGG 0.624400 5_3:-17356039 None:intergenic
ATTCCAGCAGTATAATTCGA+TGG 0.624666 5_3:-17356263 None:intergenic
GTCATTGTATGCGACCATAT+GGG 0.625776 5_3:+17358869 Msa0802740:CDS
TCATCAAATATGTATCAACA+TGG 0.635106 5_3:+17356215 Msa0802740:CDS
AAGAGTAGTACATGAAACGT+TGG 0.637745 5_3:-17359112 None:intergenic
AAAGATTTAAGGAGACCGGA+AGG 0.638530 5_3:+17359201 Msa0802740:CDS
TGAGAATAACCATCATTGAA+GGG 0.639194 5_3:-17355987 None:intergenic
AGTCAAAATACATTATGGGA+CGG 0.640377 5_3:+17359539 Msa0802740:three_prime_UTR
CGCCGACATTCTAGGCGGGG+TGG 0.642323 5_3:+17359245 Msa0802740:CDS
AGTAGTACATGAAACGTTGG+CGG 0.642577 5_3:-17359109 None:intergenic
GGAATAATATTACACTCTGG+TGG 0.643905 5_3:-17359167 None:intergenic
TGATGAAGTTCCAATTAGGG+AGG 0.646761 5_3:+17358800 Msa0802740:CDS
GCTGGAATAATATTACACTC+TGG 0.647855 5_3:-17359170 None:intergenic
ATGGTCGCATACAATGACAT+TGG 0.648480 5_3:-17358864 None:intergenic
TTAATTGATAGGAAATCAAG+GGG 0.655769 5_3:-17355754 None:intergenic
AATTACCGGTGTAACGATCG+AGG 0.659486 5_3:-17356067 None:intergenic
AGAGTGTAATATTATTCCAG+CGG 0.676164 5_3:+17359172 Msa0802740:CDS
CACCCCGCCTAGAATGTCGG+CGG 0.677092 5_3:-17359244 None:intergenic
GCCACCGCCGACATTCTAGG+CGG 0.701881 5_3:+17359240 Msa0802740:CDS
TTAAGAAGTGAGGAAATGGG+AGG 0.722839 5_3:+17358825 Msa0802740:CDS
TACCGGTGTAACGATCGAGG+AGG 0.741407 5_3:-17356064 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTGATTATGTTTTTTAT+AGG + chr5_3:17356179-17356198 Msa0802740:intron 10.0%
!!! TATATAAATATTTTTTGTGT+TGG + chr5_3:17356578-17356597 Msa0802740:intron 10.0%
!! ATGTTAGTATATAAAATTAT+AGG + chr5_3:17357560-17357579 Msa0802740:intron 10.0%
!! GAAAATATAAAATAAAAAAG+AGG - chr5_3:17357608-17357627 None:intergenic 10.0%
!! TATTTAACAAAATATTAGTA+AGG - chr5_3:17358705-17358724 None:intergenic 10.0%
!!! ATTTTTTATGGATTTTTTTT+TGG + chr5_3:17359343-17359362 Msa0802740:three_prime_UTR 10.0%
!!! TTTTTTATGGATTTTTTTTT+GGG + chr5_3:17359344-17359363 Msa0802740:three_prime_UTR 10.0%
!! ATAGAGAAAAAAAAGAAAAT+AGG - chr5_3:17355920-17355939 None:intergenic 15.0%
!! TGATTTAATAATTGAATTAC+CGG - chr5_3:17356084-17356103 None:intergenic 15.0%
!!! AGATTGTTTAATATTTTATG+TGG + chr5_3:17356402-17356421 Msa0802740:intron 15.0%
!!! ATTTAAAGTATAAGATGATA+TGG - chr5_3:17357098-17357117 None:intergenic 15.0%
!! TATCATCTTATACTTTAAAT+TGG + chr5_3:17357098-17357117 Msa0802740:intron 15.0%
!!! TTTGCATTTGTTAATTTAAA+AGG - chr5_3:17357267-17357286 None:intergenic 15.0%
!!! TGCAGTTTATTTTTTTATAT+CGG - chr5_3:17357519-17357538 None:intergenic 15.0%
!!! TAATTATACCTTTCTAAAAT+GGG - chr5_3:17357928-17357947 None:intergenic 15.0%
!!! TTAATTATACCTTTCTAAAA+TGG - chr5_3:17357929-17357948 None:intergenic 15.0%
!!! TTTTTTCTTCATTTTCTTTA+TGG + chr5_3:17358027-17358046 Msa0802740:intron 15.0%
!! ATAATTAGCCATTATTAATA+TGG + chr5_3:17358143-17358162 Msa0802740:intron 15.0%
!!! AGTATTATCCTTATTTTAAT+AGG - chr5_3:17358222-17358241 None:intergenic 15.0%
!!! TATAATAGTGTCATTTTTTA+TGG + chr5_3:17359331-17359350 Msa0802740:three_prime_UTR 15.0%
!! AATTAAGTGGTTATATAAAT+TGG + chr5_3:17359403-17359422 Msa0802740:three_prime_UTR 15.0%
!! AATAAGTCAAAATACATTAT+GGG + chr5_3:17359535-17359554 Msa0802740:three_prime_UTR 15.0%
!!! AATTATGTTTTGTTTCTTGA+AGG + chr5_3:17356129-17356148 Msa0802740:intron 20.0%
!!! ATTATGTTTTTTATAGGTTC+TGG + chr5_3:17356185-17356204 Msa0802740:intron 20.0%
!!! CAATCTTTTTCTAACAAAAA+AGG - chr5_3:17356388-17356407 None:intergenic 20.0%
!! GTAAGATATATGAAATGAAA+CGG + chr5_3:17356661-17356680 Msa0802740:intron 20.0%
!! ATATTTCATTTGTGTGTTTA+TGG + chr5_3:17356990-17357009 Msa0802740:intron 20.0%
!! GACAATTAATATTCTACTAT+TGG - chr5_3:17357056-17357075 None:intergenic 20.0%
!!! AAACTATTTTACATTGACAA+TGG - chr5_3:17357442-17357461 None:intergenic 20.0%
!!! TTTTATATCGGTTACAATAT+AGG - chr5_3:17357507-17357526 None:intergenic 20.0%
!!! CCATAGTTTTAATTACTAAA+GGG + chr5_3:17357851-17357870 Msa0802740:intron 20.0%
!!! TTCTAAAATGGGAAAAATAA+TGG - chr5_3:17357917-17357936 None:intergenic 20.0%
!!! TTATTTTTCCCATTTTAGAA+AGG + chr5_3:17357917-17357936 Msa0802740:intron 20.0%
!!! TTAGAAAGGTATAATTAATC+TGG + chr5_3:17357931-17357950 Msa0802740:intron 20.0%
!! AATTCATGCACAATAAATTA+AGG + chr5_3:17358484-17358503 Msa0802740:intron 20.0%
!! TAAGTTTACATATATTCACA+TGG - chr5_3:17358667-17358686 None:intergenic 20.0%
!! AAAATATTAGTAAGGTAAGT+AGG - chr5_3:17358697-17358716 None:intergenic 20.0%
!!! GATTAAACAAAATAGTGTTT+TGG + chr5_3:17359427-17359446 Msa0802740:three_prime_UTR 20.0%
!! GAATAAGTCAAAATACATTA+TGG + chr5_3:17359534-17359553 Msa0802740:three_prime_UTR 20.0%
! TTAATTGATAGGAAATCAAG+GGG - chr5_3:17355757-17355776 None:intergenic 25.0%
! GTTAATTGATAGGAAATCAA+GGG - chr5_3:17355758-17355777 None:intergenic 25.0%
! AGTTAATTGATAGGAAATCA+AGG - chr5_3:17355759-17355778 None:intergenic 25.0%
! TGATTTCCTATCAATTAACT+TGG + chr5_3:17355759-17355778 Msa0802740:five_prime_UTR 25.0%
! AAAGAACCAAGTTAATTGAT+AGG - chr5_3:17355768-17355787 None:intergenic 25.0%
!! GAAAATAGGAAATGAGTTTT+GGG - chr5_3:17355906-17355925 None:intergenic 25.0%
!! AGAAAATAGGAAATGAGTTT+TGG - chr5_3:17355907-17355926 None:intergenic 25.0%
! TCATCAAATATGTATCAACA+TGG + chr5_3:17356215-17356234 Msa0802740:CDS 25.0%
!! AGTTAAACTTTCCTTTTACT+TGG + chr5_3:17356450-17356469 Msa0802740:intron 25.0%
! ACAAGCAAAGTCAATTATTA+CGG + chr5_3:17356491-17356510 Msa0802740:intron 25.0%
!!! AAACTTTGAGGTAAACAAAT+TGG - chr5_3:17356532-17356551 None:intergenic 25.0%
!! TTACCTCAAAGTTTTCAAAA+AGG + chr5_3:17356538-17356557 Msa0802740:intron 25.0%
!!! TTTCCTTTTTGAAAACTTTG+AGG - chr5_3:17356544-17356563 None:intergenic 25.0%
! ATCATAGATATAGCATTCTT+TGG + chr5_3:17356909-17356928 Msa0802740:intron 25.0%
!!! TTATGGTATACTTCAAGTTT+TGG + chr5_3:17357007-17357026 Msa0802740:intron 25.0%
!! CTTTTGGATTTTACCATAAT+CGG + chr5_3:17357237-17357256 Msa0802740:intron 25.0%
! TTTAAAAGGTAATCCGATTA+TGG - chr5_3:17357253-17357272 None:intergenic 25.0%
! TGATAATATGACTCTAACTT+AGG - chr5_3:17357312-17357331 None:intergenic 25.0%
!! TATTTTACATTGACAATGGA+AGG - chr5_3:17357438-17357457 None:intergenic 25.0%
! AAAAAAGAGGACAGTATTAT+TGG - chr5_3:17357595-17357614 None:intergenic 25.0%
! TTTCTTTCCTTATGTGTTTA+TGG + chr5_3:17357624-17357643 Msa0802740:intron 25.0%
!!! GCCATAGTTTTAATTACTAA+AGG + chr5_3:17357850-17357869 Msa0802740:intron 25.0%
! CCCTTTAGTAATTAAAACTA+TGG - chr5_3:17357854-17357873 None:intergenic 25.0%
! GTAAGAAACAAAATTCAAGT+TGG - chr5_3:17357970-17357989 None:intergenic 25.0%
!!! AAACTATCAATTCTAGAGTT+TGG - chr5_3:17358180-17358199 None:intergenic 25.0%
! TGTGAAAGCCTATTAAAATA+AGG + chr5_3:17358211-17358230 Msa0802740:intron 25.0%
! ATAAGGATAATACTAGATTG+TGG + chr5_3:17358228-17358247 Msa0802740:intron 25.0%
! TAAGGATAATACTAGATTGT+GGG + chr5_3:17358229-17358248 Msa0802740:intron 25.0%
! TTTAATTAGGTGGAACTAAT+GGG - chr5_3:17358610-17358629 None:intergenic 25.0%
!!! ACTAGATTTCGAGTTTAATT+AGG - chr5_3:17358623-17358642 None:intergenic 25.0%
! AATTAAACTCGAAATCTAGT+TGG + chr5_3:17358623-17358642 Msa0802740:intron 25.0%
!!! TCCTTTTGTTGTTGAATTTA+AGG + chr5_3:17358947-17358966 Msa0802740:CDS 25.0%
! TCCTTAAATTCAACAACAAA+AGG - chr5_3:17358951-17358970 None:intergenic 25.0%
! CTTATTGCTATGATACAATT+AGG + chr5_3:17359132-17359151 Msa0802740:CDS 25.0%
! CAGTAGGTAGAATATAAAAT+CGG + chr5_3:17359483-17359502 Msa0802740:three_prime_UTR 25.0%
GAACAAGAAAACAAAGAAAG+TGG + chr5_3:17355812-17355831 Msa0802740:five_prime_UTR 30.0%
TGAGAATAACCATCATTGAA+GGG - chr5_3:17355990-17356009 None:intergenic 30.0%
ATGAGAATAACCATCATTGA+AGG - chr5_3:17355991-17356010 None:intergenic 30.0%
! TAAACTTTCCTTTTACTTGG+TGG + chr5_3:17356453-17356472 Msa0802740:intron 30.0%
AAAATTCTCCACCAAGTAAA+AGG - chr5_3:17356464-17356483 None:intergenic 30.0%
! AATTGACTTTGCTTGTTCTT+TGG - chr5_3:17356487-17356506 None:intergenic 30.0%
!!! TTGTGTTGGAAGAGTTTTTT+TGG + chr5_3:17356592-17356611 Msa0802740:intron 30.0%
!!! TGTGTTGGAAGAGTTTTTTT+GGG + chr5_3:17356593-17356612 Msa0802740:intron 30.0%
! TTGTTGTTACAGACATCAAA+CGG + chr5_3:17356728-17356747 Msa0802740:intron 30.0%
ATCTATGATATCCTTTCGTT+GGG - chr5_3:17356898-17356917 None:intergenic 30.0%
TATCTATGATATCCTTTCGT+TGG - chr5_3:17356899-17356918 None:intergenic 30.0%
TAGATATAGCATTCTTTGGA+CGG + chr5_3:17356913-17356932 Msa0802740:intron 30.0%
AAGCCAAATAATCTAAGTTG+CGG - chr5_3:17357182-17357201 None:intergenic 30.0%
CGATTATGGTAAAATCCAAA+AGG - chr5_3:17357239-17357258 None:intergenic 30.0%
CAACTCTTCTAACATTATGT+TGG + chr5_3:17357330-17357349 Msa0802740:intron 30.0%
AAAACCTATGGAATTCTTGT+TGG - chr5_3:17357476-17357495 None:intergenic 30.0%
ACTAACATTCGATGAAACTT+AGG - chr5_3:17357548-17357567 None:intergenic 30.0%
TTCCTTATGTGTTTATGGAT+TGG + chr5_3:17357629-17357648 Msa0802740:intron 30.0%
AACCAATCCATAAACACATA+AGG - chr5_3:17357634-17357653 None:intergenic 30.0%
! TTCATGTTTGACTTAATGTG+AGG + chr5_3:17357740-17357759 Msa0802740:intron 30.0%
! TCATGTTTGACTTAATGTGA+GGG + chr5_3:17357741-17357760 Msa0802740:intron 30.0%
!!! ACTAAAGGGATTGTTTTAGA+TGG + chr5_3:17357865-17357884 Msa0802740:intron 30.0%
GAGAAGGACCATATTAATAA+TGG - chr5_3:17358154-17358173 None:intergenic 30.0%
! TTTTAATAGGCTTTCACATC+AGG - chr5_3:17358209-17358228 None:intergenic 30.0%
AAGGATAATACTAGATTGTG+GGG + chr5_3:17358230-17358249 Msa0802740:intron 30.0%
!! AACGTGTGCTTTTGTTTAAT+TGG - chr5_3:17358391-17358410 None:intergenic 30.0%
!!! TGCCAATTTTAATTGGACTT+TGG - chr5_3:17358433-17358452 None:intergenic 30.0%
!! CTAGTTGTGCCAATTTTAAT+TGG - chr5_3:17358440-17358459 None:intergenic 30.0%
ACTAGCTAGAACTTAGATAA+AGG + chr5_3:17358455-17358474 Msa0802740:intron 30.0%
GTTTAATTAGGTGGAACTAA+TGG - chr5_3:17358611-17358630 None:intergenic 30.0%
!! AGATTTCGAGTTTAATTAGG+TGG - chr5_3:17358620-17358639 None:intergenic 30.0%
ACATTGATGAAGTTCCAATT+AGG + chr5_3:17358796-17358815 Msa0802740:CDS 30.0%
CATTGATGAAGTTCCAATTA+GGG + chr5_3:17358797-17358816 Msa0802740:CDS 30.0%
AGAGTGTAATATTATTCCAG+CGG + chr5_3:17359172-17359191 Msa0802740:CDS 30.0%
AAACAAAGATTTAAGGAGAC+CGG + chr5_3:17359197-17359216 Msa0802740:CDS 30.0%
GATTGACGTAGATAATTAAG+TGG + chr5_3:17359390-17359409 Msa0802740:three_prime_UTR 30.0%
AGTCAAAATACATTATGGGA+CGG + chr5_3:17359539-17359558 Msa0802740:three_prime_UTR 30.0%
! GTTCTTGATCATTTTATGGT+TGG + chr5_3:17359561-17359580 Msa0802740:three_prime_UTR 30.0%
ATAGGAAATCAAGGGGATAT+TGG - chr5_3:17355750-17355769 None:intergenic 35.0%
CAAGAAAACAAAGAAAGTGG+AGG + chr5_3:17355815-17355834 Msa0802740:five_prime_UTR 35.0%
ATCATACCTTACGTTGTTGT+GGG + chr5_3:17355874-17355893 Msa0802740:CDS 35.0%
ATAACCATCATTGAAGGGTA+TGG - chr5_3:17355985-17356004 None:intergenic 35.0%
GATGGTTATTCTCATCTCTT+CGG + chr5_3:17355996-17356015 Msa0802740:CDS 35.0%
TTACCATCGAATTATACTGC+TGG + chr5_3:17356260-17356279 Msa0802740:CDS 35.0%
ATTCCAGCAGTATAATTCGA+TGG - chr5_3:17356266-17356285 None:intergenic 35.0%
CGGTTTCAAACAAACTTGTA+CGG + chr5_3:17356821-17356840 Msa0802740:intron 35.0%
CAAACAAACTTGTACGGAAA+TGG + chr5_3:17356827-17356846 Msa0802740:intron 35.0%
GACCACACAAGTTTAGTATT+GGG - chr5_3:17357034-17357053 None:intergenic 35.0%
TCTCCGCAACTTAGATTATT+TGG + chr5_3:17357176-17357195 Msa0802740:intron 35.0%
! TCACTCAAAAGTTAGTCTCA+TGG - chr5_3:17357206-17357225 None:intergenic 35.0%
TAGGCTTATGTGAAAACCTA+TGG - chr5_3:17357488-17357507 None:intergenic 35.0%
CTTGTGATTGCAAAAGTTTC+CGG + chr5_3:17357655-17357674 Msa0802740:intron 35.0%
TTGTGATTGCAAAAGTTTCC+GGG + chr5_3:17357656-17357675 Msa0802740:intron 35.0%
TATGTGTGTATTTGTGGCTT+TGG + chr5_3:17357679-17357698 Msa0802740:intron 35.0%
!! CTTTGGAGTAACTAATAACG+TGG + chr5_3:17357696-17357715 Msa0802740:intron 35.0%
! CATGTTTGACTTAATGTGAG+GGG + chr5_3:17357742-17357761 Msa0802740:intron 35.0%
! ATGTTTGACTTAATGTGAGG+GGG + chr5_3:17357743-17357762 Msa0802740:intron 35.0%
! AGATGGTAGTGATGATACTT+TGG + chr5_3:17357882-17357901 Msa0802740:intron 35.0%
! AACAAAAGCACACGTTAGTT+AGG + chr5_3:17358395-17358414 Msa0802740:intron 35.0%
GGCCAAAGTCCAATTAAAAT+TGG + chr5_3:17358428-17358447 Msa0802740:intron 35.0%
GTGTTAAGAAGTGAGGAAAT+GGG + chr5_3:17358822-17358841 Msa0802740:CDS 35.0%
CATATGGGATGCATCAAATT+GGG + chr5_3:17358884-17358903 Msa0802740:CDS 35.0%
TTGTCGGATACTTCTTGAAT+TGG - chr5_3:17359002-17359021 None:intergenic 35.0%
!! TTCAAGATGAACGTTTTGGT+CGG - chr5_3:17359036-17359055 None:intergenic 35.0%
AAGAGTAGTACATGAAACGT+TGG - chr5_3:17359115-17359134 None:intergenic 35.0%
ATAATATTACACTCTGGTGG+TGG - chr5_3:17359167-17359186 None:intergenic 35.0%
GGAATAATATTACACTCTGG+TGG - chr5_3:17359170-17359189 None:intergenic 35.0%
GCTGGAATAATATTACACTC+TGG - chr5_3:17359173-17359192 None:intergenic 35.0%
! TTAAATCTTTGTTTCTCCGC+TGG - chr5_3:17359191-17359210 None:intergenic 35.0%
AGCGGAGAAACAAAGATTTA+AGG + chr5_3:17359190-17359209 Msa0802740:CDS 35.0%
TCATCACATATCACCTTGAT+CGG - chr5_3:17359297-17359316 None:intergenic 35.0%
!! TTAGTGTGTGTTGTTTCAGT+AGG + chr5_3:17359467-17359486 Msa0802740:three_prime_UTR 35.0%
! GACGGTTCTTGATCATTTTA+TGG + chr5_3:17359557-17359576 Msa0802740:three_prime_UTR 35.0%
!! GGGGATATTGGTCTTTGATT+GGG - chr5_3:17355738-17355757 None:intergenic 40.0%
!! AGGGGATATTGGTCTTTGAT+TGG - chr5_3:17355739-17355758 None:intergenic 40.0%
CATCATACCTTACGTTGTTG+TGG + chr5_3:17355873-17355892 Msa0802740:CDS 40.0%
TATGTTCCCACAACAACGTA+AGG - chr5_3:17355883-17355902 None:intergenic 40.0%
TATTCTCATCTCTTCGGAGA+TGG + chr5_3:17356002-17356021 Msa0802740:CDS 40.0%
CTCAAAATCCAACTCATCGT+GGG - chr5_3:17356771-17356790 None:intergenic 40.0%
ACTCAAAATCCAACTCATCG+TGG - chr5_3:17356772-17356791 None:intergenic 40.0%
!!! GAGTTGGATTTTGAGTTCCT+AGG + chr5_3:17356776-17356795 Msa0802740:intron 40.0%
! GTTTTCCAGCTATGTTACCT+AGG - chr5_3:17356796-17356815 None:intergenic 40.0%
GTAACATAGCTGGAAAACCA+TGG + chr5_3:17356798-17356817 Msa0802740:intron 40.0%
! AAGTTTGTTTGAAACCGCCA+TGG - chr5_3:17356818-17356837 None:intergenic 40.0%
GACCCAATACTAAACTTGTG+TGG + chr5_3:17357029-17357048 Msa0802740:intron 40.0%
GGACCACACAAGTTTAGTAT+TGG - chr5_3:17357035-17357054 None:intergenic 40.0%
! AGTGACAACTTTGCTCCTTT+TGG + chr5_3:17357221-17357240 Msa0802740:intron 40.0%
ATGGAATTCTTGTTGGACGT+CGG - chr5_3:17357469-17357488 None:intergenic 40.0%
ACGTCCAACAAGAATTCCAT+AGG + chr5_3:17357469-17357488 Msa0802740:intron 40.0%
CGTGGTATGTTATGAGATTG+AGG + chr5_3:17357714-17357733 Msa0802740:intron 40.0%
! TGTTTGACTTAATGTGAGGG+GGG + chr5_3:17357744-17357763 Msa0802740:intron 40.0%
!! GAAAAGTGTTTCTTGCGTGT+GGG + chr5_3:17357766-17357785 Msa0802740:intron 40.0%
TGAGTATGTGTGAGCTAACA+AGG + chr5_3:17357820-17357839 Msa0802740:intron 40.0%
TATGTGTGAGCTAACAAGGA+TGG + chr5_3:17357824-17357843 Msa0802740:intron 40.0%
!! TTCTAGAGTTTGGCATGAGA+AGG - chr5_3:17358170-17358189 None:intergenic 40.0%
CGTTAGTTAGGAGCTTATGT+TGG + chr5_3:17358407-17358426 Msa0802740:intron 40.0%
GGAATCTATGAGTTTGCGTT+TGG - chr5_3:17358567-17358586 None:intergenic 40.0%
TGATGAAGTTCCAATTAGGG+AGG + chr5_3:17358800-17358819 Msa0802740:CDS 40.0%
CTTCTTAACACCTCCCTAAT+TGG - chr5_3:17358813-17358832 None:intergenic 40.0%
GGTGTTAAGAAGTGAGGAAA+TGG + chr5_3:17358821-17358840 Msa0802740:CDS 40.0%
TTAAGAAGTGAGGAAATGGG+AGG + chr5_3:17358825-17358844 Msa0802740:CDS 40.0%
!! ACAATGACATTGGCTTGACT+GGG - chr5_3:17358857-17358876 None:intergenic 40.0%
!! TACAATGACATTGGCTTGAC+TGG - chr5_3:17358858-17358877 None:intergenic 40.0%
ATGGTCGCATACAATGACAT+TGG - chr5_3:17358867-17358886 None:intergenic 40.0%
TGTCATTGTATGCGACCATA+TGG + chr5_3:17358868-17358887 Msa0802740:CDS 40.0%
GTCATTGTATGCGACCATAT+GGG + chr5_3:17358869-17358888 Msa0802740:CDS 40.0%
CCAATTTGATGCATCCCATA+TGG - chr5_3:17358886-17358905 None:intergenic 40.0%
CCATATGGGATGCATCAAAT+TGG + chr5_3:17358883-17358902 Msa0802740:CDS 40.0%
TGCATCAAATTGGGCAACAT+CGG + chr5_3:17358893-17358912 Msa0802740:CDS 40.0%
TTTAAGGACCTAGTCCTCAA+AGG + chr5_3:17358963-17358982 Msa0802740:CDS 40.0%
GATCAACTGAACAACCTTTG+AGG - chr5_3:17358980-17358999 None:intergenic 40.0%
! GAGCTTCAAGATGAACGTTT+TGG - chr5_3:17359040-17359059 None:intergenic 40.0%
AGTAGTACATGAAACGTTGG+CGG - chr5_3:17359112-17359131 None:intergenic 40.0%
AAAGATTTAAGGAGACCGGA+AGG + chr5_3:17359201-17359220 Msa0802740:CDS 40.0%
TCCACCAAATTTCAACCTTC+CGG - chr5_3:17359219-17359238 None:intergenic 40.0%
! CATTGAAGGGTATGGTTGCA+AGG - chr5_3:17355977-17355996 None:intergenic 45.0%
GCAACCATACCCTTCAATGA+TGG + chr5_3:17355978-17355997 Msa0802740:CDS 45.0%
AATTACCGGTGTAACGATCG+AGG - chr5_3:17356070-17356089 None:intergenic 45.0%
TGAGAAAACCCACGATGAGT+TGG + chr5_3:17356760-17356779 Msa0802740:intron 45.0%
GAGTTCCTAGGTAACATAGC+TGG + chr5_3:17356788-17356807 Msa0802740:intron 45.0%
ACATAGCTGGAAAACCATGG+CGG + chr5_3:17356801-17356820 Msa0802740:intron 45.0%
GTGAGGAACGTTATCGTCTT+TGG + chr5_3:17356867-17356886 Msa0802740:intron 45.0%
TCCGGGTATGTGTGTATTTG+TGG + chr5_3:17357673-17357692 Msa0802740:intron 45.0%
GCCACAAATACACACATACC+CGG - chr5_3:17357677-17357696 None:intergenic 45.0%
!! GGAAAAGTGTTTCTTGCGTG+TGG + chr5_3:17357765-17357784 Msa0802740:intron 45.0%
ATTAATCTGGCCCACACTCA+TGG + chr5_3:17357944-17357963 Msa0802740:intron 45.0%
!! TTCAAGTTGGCCATGAGTGT+GGG - chr5_3:17357957-17357976 None:intergenic 45.0%
!! ATTCAAGTTGGCCATGAGTG+TGG - chr5_3:17357958-17357977 None:intergenic 45.0%
!! GACTTGGTTTGGCAAATGGT+AGG - chr5_3:17358588-17358607 None:intergenic 45.0%
!! ATGGGACTTGGTTTGGCAAA+TGG - chr5_3:17358592-17358611 None:intergenic 45.0%
! GGAACTAATGGGACTTGGTT+TGG - chr5_3:17358599-17358618 None:intergenic 45.0%
TAGGTGGAACTAATGGGACT+TGG - chr5_3:17358604-17358623 None:intergenic 45.0%
!! TAGGGAGGTGTTAAGAAGTG+AGG + chr5_3:17358815-17358834 Msa0802740:CDS 45.0%
GCATCAAATTGGGCAACATC+GGG + chr5_3:17358894-17358913 Msa0802740:CDS 45.0%
! CTGAACAACCTTTGAGGACT+AGG - chr5_3:17358974-17358993 None:intergenic 45.0%
!! TACACTCTGGTGGTGGTATA+TGG - chr5_3:17359160-17359179 None:intergenic 45.0%
GAGACCGGAAGGTTGAAATT+TGG + chr5_3:17359212-17359231 Msa0802740:CDS 45.0%
ACCGGAAGGTTGAAATTTGG+TGG + chr5_3:17359215-17359234 Msa0802740:CDS 45.0%
!!! ATTTTTTTTTTAGAAAAAAA+AGG + chr5_3:17356624-17356643 Msa0802740:intron 5.0%
!!! AATATTTTGTTAAATAAATT+TGG + chr5_3:17358709-17358728 Msa0802740:intron 5.0%
!!! ATATTTTGTTAAATAAATTT+GGG + chr5_3:17358710-17358729 Msa0802740:intron 5.0%
!!! TTTTTACATATAAAATAAAA+AGG - chr5_3:17359598-17359617 None:intergenic 5.0%
AACGTTGTTCGTTCCTCCGA+TGG + chr5_3:17356026-17356045 Msa0802740:CDS 50.0%
TGTAACGATCGAGGAGGAGT+TGG - chr5_3:17356061-17356080 None:intergenic 50.0%
!! GGAAATGGAAGCACTCATCG+TGG + chr5_3:17356842-17356861 Msa0802740:intron 50.0%
! CTTTGGTTCGACCCAACGAA+AGG + chr5_3:17356884-17356903 Msa0802740:intron 50.0%
TCAAATTGGGCAACATCGGG+TGG + chr5_3:17358897-17358916 Msa0802740:CDS 50.0%
!! CCTTGATCGGTGTCATCTAC+CGG - chr5_3:17359284-17359303 None:intergenic 50.0%
GTTCGTTCCTCCGATGGCAA+CGG + chr5_3:17356032-17356051 Msa0802740:CDS 55.0%
GAGTTGGACACCGTTGCCAT+CGG - chr5_3:17356045-17356064 None:intergenic 55.0%
CTCCTCCTCGATCGTTACAC+CGG + chr5_3:17356062-17356081 Msa0802740:CDS 55.0%
TACCGGTGTAACGATCGAGG+AGG - chr5_3:17356067-17356086 None:intergenic 55.0%
AAGCACTCATCGTGGACGTG+AGG + chr5_3:17356850-17356869 Msa0802740:intron 55.0%
GTCGGAGCAAACGTCGTTGT+CGG - chr5_3:17359018-17359037 None:intergenic 55.0%
GGGTGGTCGTACTTCAACTC+CGG + chr5_3:17359262-17359281 Msa0802740:CDS 55.0%
CCGGTAGATGACACCGATCA+AGG + chr5_3:17359281-17359300 Msa0802740:CDS 55.0%
TTGGACACCGTTGCCATCGG+AGG - chr5_3:17356042-17356061 None:intergenic 60.0%
GGAACCTTCGCATTGCGAGG+CGG - chr5_3:17359091-17359110 None:intergenic 60.0%
GAAGCCACCGCCGACATTCT+AGG + chr5_3:17359237-17359256 Msa0802740:CDS 60.0%
GACCACCCCGCCTAGAATGT+CGG - chr5_3:17359250-17359269 None:intergenic 60.0%
GGCGGAACCTTCGCATTGCG+AGG - chr5_3:17359094-17359113 None:intergenic 65.0%
GCCACCGCCGACATTCTAGG+CGG + chr5_3:17359240-17359259 Msa0802740:CDS 65.0%
CCACCGCCGACATTCTAGGC+GGG + chr5_3:17359241-17359260 Msa0802740:CDS 65.0%
CACCGCCGACATTCTAGGCG+GGG + chr5_3:17359242-17359261 Msa0802740:CDS 65.0%
CACCCCGCCTAGAATGTCGG+CGG - chr5_3:17359247-17359266 None:intergenic 65.0%
GCGGCGCATGGGGGTCACAT+TGG - chr5_3:17359072-17359091 None:intergenic 70.0%
CATTGCGAGGCGGCGCATGG+GGG - chr5_3:17359081-17359100 None:intergenic 70.0%
GCATTGCGAGGCGGCGCATG+GGG - chr5_3:17359082-17359101 None:intergenic 70.0%
CGCATTGCGAGGCGGCGCAT+GGG - chr5_3:17359083-17359102 None:intergenic 70.0%
TCGCATTGCGAGGCGGCGCA+TGG - chr5_3:17359084-17359103 None:intergenic 70.0%
TGCGCCGCCTCGCAATGCGA+AGG + chr5_3:17359084-17359103 Msa0802740:CDS 70.0%
CCCGCCTAGAATGTCGGCGG+TGG - chr5_3:17359244-17359263 None:intergenic 70.0%
CGCCGACATTCTAGGCGGGG+TGG + chr5_3:17359245-17359264 Msa0802740:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 17355715 17359627 17355715 ID=Msa0802740;Name=Msa0802740
chr5_3 mRNA 17355715 17359627 17355715 ID=Msa0802740-mRNA-1;Parent=Msa0802740;Name=Msa0802740-mRNA-1;_AED=0.11;_eAED=0.11;_QI=152|0.5|0.66|1|0.5|0.66|3|314|277
chr5_3 exon 17355715 17356083 17355715 ID=Msa0802740-mRNA-1:exon:7214;Parent=Msa0802740-mRNA-1
chr5_3 exon 17356201 17356294 17356201 ID=Msa0802740-mRNA-1:exon:7215;Parent=Msa0802740-mRNA-1
chr5_3 exon 17358791 17359627 17358791 ID=Msa0802740-mRNA-1:exon:7216;Parent=Msa0802740-mRNA-1
chr5_3 five_prime_UTR 17355715 17355866 17355715 ID=Msa0802740-mRNA-1:five_prime_utr;Parent=Msa0802740-mRNA-1
chr5_3 CDS 17355867 17356083 17355867 ID=Msa0802740-mRNA-1:cds;Parent=Msa0802740-mRNA-1
chr5_3 CDS 17356201 17356294 17356201 ID=Msa0802740-mRNA-1:cds;Parent=Msa0802740-mRNA-1
chr5_3 CDS 17358791 17359313 17358791 ID=Msa0802740-mRNA-1:cds;Parent=Msa0802740-mRNA-1
chr5_3 three_prime_UTR 17359314 17359627 17359314 ID=Msa0802740-mRNA-1:three_prime_utr;Parent=Msa0802740-mRNA-1
Gene Sequence

>Msa0802740

ATGAATCATCATACCTTACGTTGTTGTGGGAACATACCCAAAACTCATTTCCTATTTTCTTTTTTTTCTCTATTTCTTCTCTTCAGTTTCACAAACTCAGCTTTCGACCTTGCAACCATACCCTTCAATGATGGTTATTCTCATCTCTTCGGAGATGGCAACGTTGTTCGTTCCTCCGATGGCAACGGTGTCCAACTCCTCCTCGATCGTTACACCGGTTCTGGTTTTATTTCATCAAATATGTATCAACATGGATTCTTCAGCGCTAATATCAAGTTACCATCGAATTATACTGCTGGAATTTGTGTTGCATTTTACATTGATGAAGTTCCAATTAGGGAGGTGTTAAGAAGTGAGGAAATGGGAGGTGAATACCCAGTCAAGCCAATGTCATTGTATGCGACCATATGGGATGCATCAAATTGGGCAACATCGGGTGGAAAATACAAAGTAAATTATAAATATGCTCCTTTTGTTGTTGAATTTAAGGACCTAGTCCTCAAAGGTTGTTCAGTTGATCCAATTCAAGAAGTATCCGACAACGACGTTTGCTCCGACCAAAACGTTCATCTTGAAGCTCAAGACTATGCCAATGTGACCCCCATGCGCCGCCTCGCAATGCGAAGGTTCCGCCAACGTTTCATGTACTACTCTTATTGCTATGATACAATTAGGTACCATATACCACCACCAGAGTGTAATATTATTCCAGCGGAGAAACAAAGATTTAAGGAGACCGGAAGGTTGAAATTTGGTGGAAGCCACCGCCGACATTCTAGGCGGGGTGGTCGTACTTCAACTCCGGTAGATGACACCGATCAAGGTGATATGTGA
Protein sequence

>Msa0802740

MNHHTLRCCGNIPKTHFLFSFFSLFLLFSFTNSAFDLATIPFNDGYSHLFGDGNVVRSSDGNGVQLLLDRYTGSGFISSNMYQHGFFSANIKLPSNYTAGICVAFYIDEVPIREVLRSEEMGGEYPVKPMSLYATIWDASNWATSGGKYKVNYKYAPFVVEFKDLVLKGCSVDPIQEVSDNDVCSDQNVHLEAQDYANVTPMRRLAMRRFRQRFMYYSYCYDTIRYHIPPPECNIIPAEKQRFKETGRLKFGGSHRRHSRRGGRTSTPVDDTDQGDM*