AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1121300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1121300 MtrunA17_Chr7g0249931 94.989 459 22 1 1 459 29 486 0.0 904
Msa1121300 MtrunA17_Chr7g0250001 66.234 462 145 6 1 461 1 452 0.0 614
Msa1121300 MtrunA17_Chr7g0249981 64.989 457 154 6 1 456 15 466 0.0 603
Msa1121300 MtrunA17_Chr7g0250021 86.239 327 44 1 1 327 1 326 0.0 593
Msa1121300 MtrunA17_Chr6g0464871 54.545 451 198 6 11 458 22 468 0.0 513
Msa1121300 MtrunA17_Chr6g0464881 52.632 456 209 6 4 456 3 454 2.10e-179 509
Msa1121300 MtrunA17_Chr6g0464921 53.043 460 207 8 1 456 1 455 1.50e-176 502
Msa1121300 MtrunA17_Chr6g0464841 53.556 450 202 6 12 458 11 456 3.15e-175 499
Msa1121300 MtrunA17_Chr6g0464861 52.116 449 209 5 12 458 11 455 1.90e-173 494
Msa1121300 MtrunA17_Chr5g0414331 45.333 450 236 8 10 456 11 453 1.96e-136 400
Msa1121300 MtrunA17_Chr5g0414321 43.833 454 245 8 10 460 9 455 2.45e-131 387
Msa1121300 MtrunA17_Chr8g0380531 44.276 463 245 8 1 456 1 457 4.69e-129 381
Msa1121300 MtrunA17_Chr7g0249961 68.465 241 74 2 221 460 24 263 2.98e-116 342
Msa1121300 MtrunA17_Chr8g0377921 38.758 467 253 17 14 456 6 463 2.98e-90 282
Msa1121300 MtrunA17_Chr8g0377941 38.689 473 244 17 14 458 9 463 1.92e-88 278
Msa1121300 MtrunA17_Chr1g0207981 36.461 469 269 11 11 457 12 473 2.33e-85 270
Msa1121300 MtrunA17_Chr3g0121991 34.702 487 276 16 2 456 69 545 6.23e-84 268
Msa1121300 MtrunA17_Chr3g0098111 34.845 485 276 14 7 463 4 476 9.17e-80 255
Msa1121300 MtrunA17_Chr3g0122001 34.728 478 282 13 5 456 479 952 8.22e-79 263
Msa1121300 MtrunA17_Chr3g0122001 34.711 484 273 17 12 462 6 479 1.14e-78 263
Msa1121300 MtrunA17_Chr4g0053501 34.534 472 268 17 10 456 9 464 4.09e-75 244
Msa1121300 MtrunA17_Chr1g0161351 34.244 476 275 12 11 459 36 500 1.43e-74 243
Msa1121300 MtrunA17_Chr1g0207971 34.746 472 265 15 7 456 3 453 3.03e-73 238
Msa1121300 MtrunA17_Chr1g0207861 34.591 477 274 12 7 456 3 468 5.03e-73 238
Msa1121300 MtrunA17_Chr4g0053321 33.686 472 274 15 10 457 24 480 4.37e-71 233
Msa1121300 MtrunA17_Chr5g0393591 32.766 470 248 11 12 460 17 439 1.51e-69 228
Msa1121300 MtrunA17_Chr1g0207951 32.704 477 275 15 11 463 123 577 1.22e-68 237
Msa1121300 MtrunA17_Chr1g0207951 32.143 476 285 15 11 463 655 1115 1.62e-61 216
Msa1121300 MtrunA17_Chr8g0365811 33.475 472 274 13 14 456 497 957 4.26e-68 234
Msa1121300 MtrunA17_Chr8g0365811 31.950 482 286 13 7 456 4 475 3.08e-63 221
Msa1121300 MtrunA17_Chr1g0207831 33.190 464 285 13 11 456 7 463 6.46e-64 214
Msa1121300 MtrunA17_Chr3g0092641 31.303 476 283 14 7 449 6 470 4.42e-63 212
Msa1121300 MtrunA17_Chr1g0207931 32.298 483 242 13 4 463 84 504 8.80e-63 212
Msa1121300 MtrunA17_Chr5g0426431 31.753 485 296 13 1 457 1 478 1.05e-62 211
Msa1121300 MtrunA17_Chr7g0218791 31.613 465 269 17 12 454 5 442 2.49e-58 198
Msa1121300 MtrunA17_Chr5g0431361 29.348 460 292 13 12 456 12 453 1.65e-57 196
Msa1121300 MtrunA17_Chr5g0431401 29.476 458 291 13 12 456 10 448 4.12e-57 195
Msa1121300 MtrunA17_Chr5g0401721 29.106 481 297 15 7 456 3 470 7.99e-57 195
Msa1121300 MtrunA17_Chr2g0278711 28.831 496 284 16 7 457 6 477 2.91e-56 194
Msa1121300 MtrunA17_Chr7g0243681 30.408 490 285 17 7 456 6 479 2.91e-55 191
Msa1121300 MtrunA17_Chr7g0218811 29.718 461 278 13 12 454 15 447 7.02e-55 189
Msa1121300 MtrunA17_Chr3g0118671 29.132 484 298 15 9 458 3 475 1.65e-54 189
Msa1121300 MtrunA17_Chr5g0431441 29.474 475 286 16 12 460 18 469 2.49e-54 188
Msa1121300 MtrunA17_Chr3g0118711 28.512 484 295 15 12 458 13 482 3.70e-54 188
Msa1121300 MtrunA17_Chr7g0232411 29.959 484 280 16 8 454 2 463 6.83e-54 187
Msa1121300 MtrunA17_Chr4g0050341 29.072 485 293 14 3 448 10 482 1.86e-53 186
Msa1121300 MtrunA17_Chr3g0118691 28.392 479 302 13 12 458 15 484 2.32e-53 186
Msa1121300 MtrunA17_Chr8g0336331 28.481 474 299 14 7 449 5 469 3.07e-53 186
Msa1121300 MtrunA17_Chr5g0431421 28.228 457 300 12 12 457 10 449 9.56e-53 184
Msa1121300 MtrunA17_Chr3g0118701 27.216 485 300 15 12 458 15 484 2.17e-52 183
Msa1121300 MtrunA17_Chr5g0431371 28.070 456 300 12 12 456 10 448 2.24e-52 182
Msa1121300 MtrunA17_Chr7g0243631 29.084 502 294 19 1 456 1 486 2.66e-52 184
Msa1121300 MtrunA17_Chr7g0232391 30.705 482 269 16 8 449 2 458 3.56e-52 182
Msa1121300 MtrunA17_Chr7g0243771 30.658 486 282 18 11 456 5 475 4.46e-52 182
Msa1121300 MtrunA17_Chr7g0243951 27.033 492 303 14 7 456 6 483 7.26e-52 182
Msa1121300 MtrunA17_Chr5g0412111 28.571 476 298 16 12 460 5 465 8.41e-52 181
Msa1121300 MtrunA17_Chr3g0118771 27.721 487 303 14 8 458 17 490 2.44e-51 181
Msa1121300 MtrunA17_Chr5g0423981 28.139 462 274 15 12 449 10 437 3.36e-51 179
Msa1121300 MtrunA17_Chr3g0078841 26.737 475 313 13 12 457 10 478 4.78e-51 180
Msa1121300 MtrunA17_Chr7g0217881 28.261 460 299 13 9 449 7 454 1.03e-50 178
Msa1121300 MtrunA17_Chr7g0243931 27.634 503 304 15 1 456 1 490 1.31e-50 179
Msa1121300 MtrunA17_Chr7g0218821 28.782 476 274 17 12 454 5 448 1.68e-50 177
Msa1121300 MtrunA17_Chr6g0454191 27.463 477 304 15 7 449 5 473 4.38e-50 177
Msa1121300 MtrunA17_Chr6g0454401 27.406 478 307 14 5 449 3 473 5.06e-50 177
Msa1121300 MtrunA17_Chr7g0243801 29.328 491 292 18 6 456 1 476 1.04e-49 176
Msa1121300 MtrunA17_Chr7g0243781 28.543 501 288 21 8 462 5 481 1.66e-49 176
Msa1121300 MtrunA17_Chr4g0044511 29.209 493 287 20 5 456 33 504 1.67e-49 176
Msa1121300 MtrunA17_Chr8g0359821 27.406 478 300 14 7 449 5 470 2.21e-49 175
Msa1121300 MtrunA17_Chr7g0218831 27.391 460 289 14 12 454 6 437 2.60e-49 174
Msa1121300 MtrunA17_Chr6g0454341 26.059 472 314 13 7 449 5 470 3.27e-49 175
Msa1121300 MtrunA17_Chr6g0454301 26.337 486 311 13 7 457 258 731 3.28e-49 179
Msa1121300 MtrunA17_Chr6g0454301 32.105 190 119 4 265 449 38 222 3.28e-28 118
Msa1121300 MtrunA17_Chr5g0412101 28.512 484 305 15 1 455 1 472 8.34e-49 174
Msa1121300 MtrunA17_Chr6g0453961 27.521 476 295 15 12 449 19 482 1.02e-48 174
Msa1121300 MtrunA17_Chr4g0060511 28.685 502 286 19 7 456 6 487 1.11e-48 174
Msa1121300 MtrunA17_Chr7g0243761 30.101 495 255 20 7 456 6 454 1.22e-48 173
Msa1121300 MtrunA17_Chr3g0106231 30.277 469 292 15 7 463 13 458 1.39e-48 173
Msa1121300 MtrunA17_Chr8g0361371 28.719 484 274 16 15 453 10 467 1.62e-48 173
Msa1121300 MtrunA17_Chr4g0066221 26.854 499 280 17 16 459 15 483 1.97e-48 173
Msa1121300 MtrunA17_Chr7g0275681 28.661 478 285 16 12 449 12 473 2.19e-48 172
Msa1121300 MtrunA17_Chr6g0453951 27.484 473 304 12 9 449 54 519 7.97e-48 172
Msa1121300 MtrunA17_Chr7g0218841 26.957 460 290 14 12 453 6 437 8.01e-48 170
Msa1121300 MtrunA17_Chr7g0243861 26.829 492 305 11 7 456 9 487 8.81e-48 171
Msa1121300 MtrunA17_Chr6g0454211 27.216 485 304 14 2 449 287 759 1.02e-47 175
Msa1121300 MtrunA17_Chr6g0454211 27.143 210 111 7 168 369 61 236 2.64e-14 75.5
Msa1121300 MtrunA17_Chr6g0454331 25.458 491 315 14 6 457 1 479 1.10e-47 171
Msa1121300 MtrunA17_Chr4g0032331 31.330 466 279 19 12 456 7 452 1.48e-47 170
Msa1121300 MtrunA17_Chr7g0243871 27.721 487 295 18 8 456 5 472 1.60e-47 170
Msa1121300 MtrunA17_Chr5g0419771 27.200 500 306 14 5 459 29 515 1.68e-47 171
Msa1121300 MtrunA17_Chr6g0454321 26.840 462 303 14 7 439 5 460 2.17e-47 173
Msa1121300 MtrunA17_Chr8g0366391 30.181 497 283 24 8 460 5 481 2.38e-47 170
Msa1121300 MtrunA17_Chr4g0066201 27.515 487 295 18 5 456 11 474 3.87e-47 169
Msa1121300 MtrunA17_Chr6g0454261 26.625 477 303 14 9 449 7 472 4.08e-47 169
Msa1121300 MtrunA17_Chr6g0454141 26.875 480 302 16 7 449 5 472 4.35e-47 169
Msa1121300 MtrunA17_Chr8g0373301 27.119 472 285 14 12 447 9 457 6.53e-47 168
Msa1121300 MtrunA17_Chr7g0232401 26.860 484 301 12 8 456 2 467 1.23e-46 167
Msa1121300 MtrunA17_Chr7g0235051 28.306 484 273 15 7 454 6 451 3.99e-46 166
Msa1121300 MtrunA17_Chr3g0118661 26.626 492 301 17 8 458 9 481 4.20e-46 166
Msa1121300 MtrunA17_Chr8g0336741 29.691 485 269 16 11 452 12 467 1.17e-45 165
Msa1121300 MtrunA17_Chr5g0401851 27.379 515 289 21 1 459 1 486 1.56e-45 165
Msa1121300 MtrunA17_Chr4g0066261 27.163 497 276 19 16 456 15 481 3.24e-45 164
Msa1121300 MtrunA17_Chr5g0412131 28.601 479 288 18 12 455 12 471 3.65e-45 164
Msa1121300 MtrunA17_Chr4g0044481 31.313 396 232 12 12 392 27 397 4.96e-45 162
Msa1121300 MtrunA17_Chr4g0072771 27.215 474 304 14 2 455 15 467 6.51e-45 163
Msa1121300 MtrunA17_Chr5g0442601 26.000 500 302 16 9 460 401 880 8.06e-45 167
Msa1121300 MtrunA17_Chr5g0442601 27.059 340 185 9 81 392 29 333 2.10e-31 128
Msa1121300 MtrunA17_Chr8g0336651 29.498 478 277 13 9 449 3 457 9.73e-45 167
Msa1121300 MtrunA17_Chr8g0336651 29.289 478 282 16 9 449 778 1236 5.48e-44 165
Msa1121300 MtrunA17_Chr8g0336651 32.806 253 149 4 197 449 536 767 6.80e-36 141
Msa1121300 MtrunA17_Chr8g0336691 28.750 480 286 15 9 452 10 469 1.11e-44 167
Msa1121300 MtrunA17_Chr8g0336691 28.000 475 282 13 9 445 916 1368 8.77e-42 159
Msa1121300 MtrunA17_Chr8g0336691 28.541 466 271 16 9 449 477 905 1.51e-38 149
Msa1121300 MtrunA17_Chr8g0335141 29.132 484 274 18 15 456 12 468 1.14e-44 162
Msa1121300 MtrunA17_Chr8g0374901 24.798 496 315 13 1 456 1 478 1.49e-44 162
Msa1121300 MtrunA17_Chr5g0442561 26.380 489 297 15 9 454 2 470 1.99e-44 162
Msa1121300 MtrunA17_Chr5g0440421 28.947 494 304 15 9 459 7 496 2.17e-44 162
Msa1121300 MtrunA17_Chr6g0454361 27.122 483 303 15 12 457 11 481 2.38e-44 162
Msa1121300 MtrunA17_Chr7g0232331 28.163 490 292 16 8 459 2 469 2.47e-44 161
Msa1121300 MtrunA17_Chr5g0426401 32.781 302 187 8 168 460 20 314 3.07e-44 157
Msa1121300 MtrunA17_Chr7g0232341 28.542 487 288 16 8 456 2 466 3.39e-44 161
Msa1121300 MtrunA17_Chr6g0454181 26.667 480 303 13 7 449 5 472 1.64e-43 159
Msa1121300 MtrunA17_Chr1g0153451 28.247 485 281 15 9 453 3 460 1.72e-43 159
Msa1121300 MtrunA17_Chr6g0459311 27.935 494 281 18 1 449 1 464 1.83e-43 159
Msa1121300 MtrunA17_Chr6g0454121 27.158 475 296 17 12 449 10 471 2.50e-43 159
Msa1121300 MtrunA17_Chr8g0374971 24.600 500 313 15 1 456 1 480 3.01e-43 159
Msa1121300 MtrunA17_Chr6g0454151 28.211 475 290 16 12 449 10 470 3.17e-43 159
Msa1121300 MtrunA17_Chr7g0265051 25.595 504 294 13 11 458 8 486 3.26e-43 159
Msa1121300 MtrunA17_Chr7g0265101 27.879 495 296 16 11 458 8 488 7.69e-43 158
Msa1121300 MtrunA17_Chr7g0275511 28.747 487 277 17 2 445 5 464 8.52e-43 157
Msa1121300 MtrunA17_Chr8g0347281 26.804 485 301 14 2 453 6 469 9.37e-43 157
Msa1121300 MtrunA17_Chr1g0207881 30.000 460 240 16 11 463 7 391 1.34e-42 155
Msa1121300 MtrunA17_Chr6g0452771 27.178 482 300 16 6 449 4 472 1.93e-42 156
Msa1121300 MtrunA17_Chr4g0066151 26.230 488 297 18 9 456 15 479 2.29e-42 156
Msa1121300 MtrunA17_Chr4g0044521 28.457 499 278 23 8 462 5 468 2.33e-42 156
Msa1121300 MtrunA17_Chr3g0112771 27.755 490 295 17 1 463 1 458 2.35e-42 156
Msa1121300 MtrunA17_Chr6g0463891 27.143 490 299 14 10 456 10 484 2.37e-42 156
Msa1121300 MtrunA17_Chr8g0334831 27.953 508 278 18 1 453 1 475 3.76e-42 155
Msa1121300 MtrunA17_Chr4g0066281 26.216 473 295 15 16 456 16 466 3.86e-42 155
Msa1121300 MtrunA17_Chr6g0454201 26.115 471 307 15 12 449 11 473 5.83e-42 155
Msa1121300 MtrunA17_Chr8g0335161 27.197 478 290 15 9 449 3 459 6.85e-42 155
Msa1121300 MtrunA17_Chr5g0442541 27.403 489 285 16 9 454 2 463 6.92e-42 155
Msa1121300 MtrunA17_Chr4g0072761 26.068 468 303 15 11 462 14 454 8.98e-42 154
Msa1121300 MtrunA17_Chr3g0118751 26.105 475 289 13 12 458 6 446 1.00e-41 154
Msa1121300 MtrunA17_Chr3g0118721 31.399 293 182 7 177 458 7 291 1.24e-41 150
Msa1121300 MtrunA17_Chr8g0355221 25.984 508 295 17 11 463 14 495 1.69e-41 154
Msa1121300 MtrunA17_Chr4g0011051 27.126 494 304 17 11 459 8 490 1.79e-41 154
Msa1121300 MtrunA17_Chr8g0339631 28.084 381 230 9 112 463 110 475 1.83e-41 154
Msa1121300 MtrunA17_Chr6g0454291 25.364 481 310 15 6 449 1 469 3.29e-41 153
Msa1121300 MtrunA17_Chr5g0432731 34.091 264 163 6 200 459 43 299 3.69e-41 149
Msa1121300 MtrunA17_Chr3g0112761 28.205 468 289 15 8 453 4 446 3.95e-41 152
Msa1121300 MtrunA17_Chr3g0106251 35.878 262 154 7 206 463 49 300 4.90e-41 149
Msa1121300 MtrunA17_Chr7g0243851 26.559 497 258 17 7 456 6 442 5.15e-41 152
Msa1121300 MtrunA17_Chr7g0265041 27.992 493 296 20 12 458 11 490 6.72e-41 152
Msa1121300 MtrunA17_Chr6g0454251 27.182 401 248 10 6 369 1 394 8.56e-41 150
Msa1121300 MtrunA17_Chr6g0486251 27.677 495 274 20 1 449 1 457 9.45e-41 151
Msa1121300 MtrunA17_Chr6g0486201 27.677 495 274 20 1 449 1 457 9.45e-41 151
Msa1121300 MtrunA17_Chr7g0232311 29.944 354 208 12 125 453 122 460 1.83e-40 150
Msa1121300 MtrunA17_Chr5g0448551 27.802 464 288 17 16 458 11 448 3.30e-40 150
Msa1121300 MtrunA17_Chr6g0454131 26.809 470 304 16 12 449 10 471 5.00e-40 150
Msa1121300 MtrunA17_Chr6g0463861 25.657 495 284 19 16 459 15 476 5.03e-40 150
Msa1121300 MtrunA17_Chr1g0179901 25.714 490 317 13 10 459 14 496 7.05e-40 150
Msa1121300 MtrunA17_Chr6g0463851 25.767 489 294 17 16 456 15 482 1.07e-39 149
Msa1121300 MtrunA17_Chr5g0442491 25.210 476 277 15 9 425 2 457 1.26e-39 149
Msa1121300 MtrunA17_Chr8g0339451 27.136 398 231 11 95 452 81 459 1.27e-39 148
Msa1121300 MtrunA17_Chr5g0442521 24.494 494 303 15 9 454 2 473 1.32e-39 149
Msa1121300 MtrunA17_Chr4g0014061 26.296 521 271 16 8 462 5 478 1.46e-39 149
Msa1121300 MtrunA17_Chr5g0442581 24.950 501 293 16 9 454 2 474 1.54e-39 149
Msa1121300 MtrunA17_Chr6g0462571 28.908 467 275 17 14 445 6 450 2.06e-39 148
Msa1121300 MtrunA17_Chr6g0449931 27.869 488 277 18 1 445 1 456 2.50e-39 148
Msa1121300 MtrunA17_Chr6g0454351 25.988 481 288 18 7 449 7 457 8.44e-39 146
Msa1121300 MtrunA17_Chr5g0416741 24.551 501 314 18 1 456 2 483 9.88e-39 146
Msa1121300 MtrunA17_Chr2g0294931 24.268 478 314 14 16 456 15 481 1.92e-38 145
Msa1121300 MtrunA17_Chr1g0165701 25.502 498 291 16 11 456 14 483 2.00e-38 145
Msa1121300 MtrunA17_Chr5g0428081 25.051 487 297 15 16 456 15 479 2.16e-38 145
Msa1121300 MtrunA17_Chr8g0334861 28.571 385 225 12 100 453 95 460 2.61e-38 145
Msa1121300 MtrunA17_Chr4g0066131 24.536 485 309 14 9 456 10 474 2.85e-38 145
Msa1121300 MtrunA17_Chr5g0420801 28.395 486 295 18 6 461 1 463 3.57e-38 144
Msa1121300 MtrunA17_Chr1g0173121 27.926 487 275 21 7 453 9 459 3.88e-38 144
Msa1121300 MtrunA17_Chr8g0339461 28.919 370 222 10 112 452 110 467 4.09e-38 144
Msa1121300 MtrunA17_Chr8g0350881 24.853 511 298 17 1 456 1 480 4.95e-38 144
Msa1121300 MtrunA17_Chr8g0374941 25.200 500 310 17 1 456 938 1417 5.72e-38 147
Msa1121300 MtrunA17_Chr8g0374941 25.106 470 284 15 15 438 479 926 1.71e-35 140
Msa1121300 MtrunA17_Chr8g0374941 25.373 469 286 17 15 439 14 462 2.22e-35 140
Msa1121300 MtrunA17_Chr4g0044501 26.722 479 306 17 11 456 9 475 5.80e-38 144
Msa1121300 MtrunA17_Chr4g0066171 24.746 493 310 14 3 459 12 479 5.83e-38 144
Msa1121300 MtrunA17_Chr5g0448521 26.087 483 285 17 9 446 2 457 1.00e-37 143
Msa1121300 MtrunA17_Chr8g0347271 26.230 488 300 14 2 453 7 470 1.08e-37 143
Msa1121300 MtrunA17_Chr3g0079731 31.053 380 213 15 112 455 113 479 1.26e-37 143
Msa1121300 MtrunA17_Chr7g0265151 26.122 490 314 14 11 461 8 488 1.57e-37 143
Msa1121300 MtrunA17_Chr5g0410941 25.156 481 302 15 16 456 27 489 1.87e-37 143
Msa1121300 MtrunA17_Chr6g0462541 40.426 188 102 4 267 445 266 452 5.87e-37 141
Msa1121300 MtrunA17_Chr8g0336731 29.775 356 209 9 124 453 147 487 7.41e-37 141
Msa1121300 MtrunA17_Chr7g0265141 25.458 491 310 14 8 454 5 483 1.16e-36 140
Msa1121300 MtrunA17_Chr5g0431431 28.534 382 200 13 12 387 10 324 1.16e-36 138
Msa1121300 MtrunA17_Chr8g0374931 24.324 481 310 14 16 456 15 481 1.23e-36 140
Msa1121300 MtrunA17_Chr8g0339601 30.449 312 180 8 166 452 27 326 1.41e-36 137
Msa1121300 MtrunA17_Chr2g0307961 28.540 459 297 13 12 449 13 461 1.56e-36 140
Msa1121300 MtrunA17_Chr5g0429711 27.872 470 281 15 8 445 7 450 1.59e-36 140
Msa1121300 MtrunA17_Chr6g0462551 26.282 468 289 13 14 445 6 453 2.41e-36 139
Msa1121300 MtrunA17_Chr7g0243611 40.291 206 106 6 200 392 70 271 3.23e-36 135
Msa1121300 MtrunA17_Chr7g0243711 31.667 240 145 5 235 456 78 316 3.41e-36 136
Msa1121300 MtrunA17_Chr5g0429681 28.163 490 275 18 9 454 41 497 9.59e-36 138
Msa1121300 MtrunA17_Chr5g0419761 25.743 505 307 17 8 462 5 491 1.06e-35 138
Msa1121300 MtrunA17_Chr7g0218311 24.180 488 299 14 16 456 20 483 1.44e-35 137
Msa1121300 MtrunA17_Chr6g0462531 28.205 468 280 16 14 445 6 453 2.61e-35 136
Msa1121300 MtrunA17_Chr8g0370941 26.326 509 275 19 9 449 5 481 3.38e-35 137
Msa1121300 MtrunA17_Chr8g0382021 25.847 472 290 18 17 453 39 485 6.72e-35 135
Msa1121300 MtrunA17_Chr1g0159551 30.537 298 169 12 178 453 175 456 1.14e-34 134
Msa1121300 MtrunA17_Chr1g0153461 34.762 210 118 4 263 454 2 210 1.64e-34 128
Msa1121300 MtrunA17_Chr8g0369341 27.328 494 300 18 6 461 1 473 3.01e-34 134
Msa1121300 MtrunA17_Chr7g0243811 29.484 407 211 17 25 390 2 373 9.11e-34 131
Msa1121300 MtrunA17_Chr8g0339441 34.928 209 114 4 265 452 218 425 9.90e-34 131
Msa1121300 MtrunA17_Chr6g0462521 40.415 193 105 4 262 445 248 439 1.51e-33 131
Msa1121300 MtrunA17_Chr6g0454271 27.431 288 195 8 177 457 7 287 4.53e-33 126
Msa1121300 MtrunA17_Chr8g0334851 28.041 485 286 16 1 447 1 460 4.81e-33 130
Msa1121300 MtrunA17_Chr7g0241801 24.678 466 300 13 9 462 6 432 7.63e-33 129
Msa1121300 MtrunA17_Chr2g0329111 27.812 489 302 19 14 462 8 485 1.66e-32 129
Msa1121300 MtrunA17_Chr5g0416821 23.274 507 302 21 1 456 3 473 1.76e-32 129
Msa1121300 MtrunA17_Chr7g0232351 28.321 399 227 14 8 369 2 378 1.43e-31 124
Msa1121300 MtrunA17_Chr5g0442511 24.544 493 291 17 9 460 46 498 1.82e-31 126
Msa1121300 MtrunA17_Chr2g0302961 23.881 469 311 13 19 456 12 465 3.19e-31 125
Msa1121300 MtrunA17_Chr2g0294941 26.558 369 211 11 114 442 17 365 7.64e-31 122
Msa1121300 MtrunA17_Chr6g0454221 33.158 190 117 5 265 449 39 223 8.87e-31 120
Msa1121300 MtrunA17_Chr7g0241781 26.357 387 236 10 9 381 6 357 1.23e-30 123
Msa1121300 MtrunA17_Chr2g0294921 22.600 500 295 18 16 456 164 630 1.82e-30 124
Msa1121300 MtrunA17_Chr7g0265111 25.502 498 301 18 11 457 38 516 5.12e-30 122
Msa1121300 MtrunA17_Chr2g0302991 26.471 374 241 10 104 456 102 462 5.57e-30 121
Msa1121300 MtrunA17_Chr5g0403641 30.712 267 156 8 207 449 234 495 1.03e-29 121
Msa1121300 MtrunA17_Chr7g0243911 34.010 197 113 4 260 439 17 213 1.51e-29 115
Msa1121300 MtrunA17_Chr2g0278721 26.230 488 299 21 3 458 6 464 2.75e-29 121
Msa1121300 MtrunA17_Chr2g0278721 25.150 501 295 23 1 456 508 973 7.84e-23 102
Msa1121300 MtrunA17_Chr4g0042891 32.700 263 142 8 179 415 175 428 1.60e-28 117
Msa1121300 MtrunA17_Chr5g0409591 33.645 214 116 5 235 422 240 453 1.90e-28 117
Msa1121300 MtrunA17_Chr8g0336251 25.667 487 301 17 6 458 1 460 1.92e-28 117
Msa1121300 MtrunA17_Chr8g0336321 25.667 487 301 17 6 458 1 460 2.18e-28 117
Msa1121300 MtrunA17_Chr8g0355011 25.281 356 201 11 112 449 46 354 3.15e-28 115
Msa1121300 MtrunA17_Chr2g0278741 25.630 476 301 17 7 456 92 540 3.61e-28 117
Msa1121300 MtrunA17_Chr3g0079711 35.106 188 96 7 291 455 3 187 1.48e-27 108
Msa1121300 MtrunA17_Chr6g0466841 25.761 493 304 22 2 463 8 469 2.72e-27 114
Msa1121300 MtrunA17_Chr8g0367221 27.033 455 286 14 9 434 1285 1722 2.73e-27 115
Msa1121300 MtrunA17_Chr8g0367221 27.981 411 238 13 9 384 9 396 1.10e-25 111
Msa1121300 MtrunA17_Chr8g0367221 32.338 201 117 6 266 457 1057 1247 9.03e-22 99.0
Msa1121300 MtrunA17_Chr8g0361411 26.809 470 305 14 7 456 3 453 3.08e-27 113
Msa1121300 MtrunA17_Chr6g0466831 25.610 492 306 22 2 463 8 469 5.40e-27 113
Msa1121300 MtrunA17_Chr7g0249971 60.674 89 32 3 1 89 1 86 2.68e-26 103
Msa1121300 MtrunA17_Chr4g0042931 32.601 273 152 8 165 415 164 426 4.48e-26 110
Msa1121300 MtrunA17_Chr4g0069611 25.735 408 256 14 2 384 5 390 7.49e-26 109
Msa1121300 MtrunA17_Chr6g0454371 31.548 168 105 5 287 449 1 163 9.70e-26 103
Msa1121300 MtrunA17_Chr6g0454171 29.004 231 134 8 234 457 103 310 3.15e-24 102
Msa1121300 MtrunA17_Chr7g0250011 79.630 54 11 0 371 424 1 54 6.74e-24 94.4
Msa1121300 MtrunA17_Chr7g0231631 23.970 267 161 7 212 456 13 259 1.33e-23 100
Msa1121300 MtrunA17_Chr6g0482061 25.887 479 304 17 12 451 11 477 1.72e-23 102
Msa1121300 MtrunA17_Chr4g0029131 24.947 473 276 17 1 432 1 435 2.59e-23 103
Msa1121300 MtrunA17_Chr1g0196851 24.619 459 278 14 11 432 48 475 4.69e-23 101
Msa1121300 MtrunA17_Chr4g0029151 24.396 455 297 13 3 432 11 443 5.28e-23 101
Msa1121300 MtrunA17_Chr8g0336261 36.567 134 76 4 287 415 1 130 1.19e-22 93.6
Msa1121300 MtrunA17_Chr2g0302851 26.582 395 245 16 7 377 11 384 3.71e-22 99.0
Msa1121300 MtrunA17_Chr6g0464091 25.852 499 301 23 3 463 9 476 5.17e-22 98.6
Msa1121300 MtrunA17_Chr8g0357361 32.673 202 115 8 209 399 64 255 1.21e-21 94.4
Msa1121300 MtrunA17_Chr8g0337381 35.484 124 75 2 330 452 2 121 2.06e-21 90.1
Msa1121300 MtrunA17_Chr4g0039881 24.533 428 283 16 22 428 2 410 5.89e-21 95.1
Msa1121300 MtrunA17_Chr4g0066141 30.769 156 95 3 314 456 196 351 1.47e-20 92.8
Msa1121300 MtrunA17_Chr5g0427571 39.062 128 71 3 266 386 104 231 2.10e-20 91.7
Msa1121300 MtrunA17_Chr3g0092031 35.119 168 100 6 267 428 6 170 4.07e-20 88.2
Msa1121300 MtrunA17_Chr6g0454231 24.904 261 151 8 203 459 2 221 9.42e-19 88.6
Msa1121300 MtrunA17_Chr2g0319801 25.486 463 267 21 7 427 3 429 3.29e-17 84.0
Msa1121300 MtrunA17_Chr2g0283041 25.574 305 194 11 169 458 171 457 4.45e-17 83.6
Msa1121300 MtrunA17_Chr4g0040691 28.017 232 145 7 206 427 210 429 1.99e-16 81.3
Msa1121300 MtrunA17_Chr4g0040711 28.458 253 156 8 185 427 192 429 7.18e-16 79.7
Msa1121300 MtrunA17_Chr2g0319731 24.945 457 291 17 7 434 20 453 2.11e-15 78.2
Msa1121300 MtrunA17_Chr5g0442501 22.671 322 210 10 9 311 2 303 5.30e-14 72.8
Msa1121300 MtrunA17_Chr2g0319791 31.214 173 109 5 265 427 257 429 3.57e-13 71.2
Msa1121300 MtrunA17_Chr7g0243731 42.254 71 40 1 324 393 2 72 4.13e-13 64.7
Msa1121300 MtrunA17_Chr6g0453981 28.966 145 101 2 168 311 61 204 4.97e-13 68.6
Msa1121300 MtrunA17_Chr2g0319761 28.340 247 149 10 196 427 196 429 1.31e-12 69.7
Msa1121300 MtrunA17_Chr8g0334841 35.088 114 66 1 203 316 34 139 2.61e-12 65.1
Msa1121300 MtrunA17_Chr5g0426411 33.094 139 85 3 12 142 12 150 6.14e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1121300 AT1G05675.1 42.222 450 248 8 12 454 6 450 8.58e-115 345
Msa1121300 AT1G05680.1 41.333 450 252 8 12 454 6 450 7.16e-114 343
Msa1121300 AT2G31790.1 40.305 459 258 9 8 456 4 456 1.99e-111 337
Msa1121300 AT2G43820.1 40.305 459 247 12 9 456 4 446 3.25e-111 336
Msa1121300 AT2G31750.1 41.253 463 242 12 12 458 8 456 1.24e-110 335
Msa1121300 AT2G31750.2 41.164 464 243 12 11 458 7 456 3.69e-110 334
Msa1121300 AT2G43840.2 39.073 453 255 10 12 456 7 446 5.89e-110 333
Msa1121300 AT2G43840.1 38.852 453 256 10 12 456 7 446 5.23e-109 330
Msa1121300 AT1G24100.1 40.129 466 240 15 12 456 11 458 7.67e-100 307
Msa1121300 AT4G15480.1 34.810 474 276 12 7 456 14 478 2.97e-84 268
Msa1121300 AT1G05560.1 34.755 469 260 11 12 456 5 451 3.70e-79 254
Msa1121300 AT1G05560.2 34.755 469 260 11 12 456 55 501 6.36e-79 254
Msa1121300 AT1G05530.1 35.560 464 268 12 12 457 5 455 1.70e-77 249
Msa1121300 AT4G15490.1 33.680 481 283 13 8 463 4 473 1.38e-76 247
Msa1121300 AT4G14090.1 33.261 460 281 12 7 454 8 453 3.76e-72 235
Msa1121300 AT4G15550.1 33.198 491 266 14 3 454 4 471 4.88e-72 235
Msa1121300 AT3G21560.1 31.049 467 294 8 12 456 12 472 2.33e-71 234
Msa1121300 AT4G15500.1 32.484 471 285 14 12 461 9 467 1.58e-69 229
Msa1121300 AT2G23260.1 32.609 460 285 14 9 456 7 453 2.74e-66 220
Msa1121300 AT1G78270.1 32.172 488 288 16 7 461 8 485 3.61e-64 215
Msa1121300 AT1G22400.1 29.622 476 291 13 7 448 8 473 1.37e-62 211
Msa1121300 AT1G22360.1 30.898 479 288 14 12 457 10 478 4.93e-61 207
Msa1121300 AT1G22380.1 29.363 487 285 14 12 457 13 481 1.27e-60 206
Msa1121300 AT2G23250.1 31.403 449 275 14 21 456 7 435 3.69e-60 203
Msa1121300 AT2G30140.2 30.720 472 295 15 3 463 4 454 4.83e-59 201
Msa1121300 AT2G30140.1 30.655 473 295 16 3 463 4 455 7.13e-59 200
Msa1121300 AT1G22360.2 30.480 479 278 14 12 457 10 466 1.91e-57 197
Msa1121300 AT1G22340.1 27.959 490 312 14 1 457 1 482 1.09e-56 195
Msa1121300 AT2G28080.1 28.694 467 294 13 16 458 22 473 2.65e-55 191
Msa1121300 AT2G36970.1 28.807 486 288 14 8 456 6 470 3.16e-55 191
Msa1121300 AT2G30150.2 29.158 463 293 14 12 459 13 455 1.01e-53 187
Msa1121300 AT2G30150.1 29.194 459 290 14 16 459 1 439 1.18e-52 183
Msa1121300 AT3G02100.1 29.310 464 288 15 12 454 13 457 2.53e-52 183
Msa1121300 AT1G22370.2 28.660 485 296 14 7 457 8 476 1.96e-50 178
Msa1121300 AT5G59580.1 30.152 461 284 18 12 456 9 447 4.97e-48 171
Msa1121300 AT2G36780.1 28.395 486 308 13 10 460 12 492 2.23e-47 171
Msa1121300 AT2G36750.1 28.600 493 293 17 11 459 9 486 6.96e-47 169
Msa1121300 AT2G36770.1 28.427 496 289 19 11 458 13 490 8.99e-46 166
Msa1121300 AT5G59590.1 29.175 473 294 18 1 456 1 449 9.75e-46 165
Msa1121300 AT4G01070.1 27.733 494 268 12 8 449 4 460 2.86e-45 164
Msa1121300 AT2G36800.1 27.291 502 318 16 1 463 1 494 3.25e-45 165
Msa1121300 AT2G36760.1 28.163 490 298 16 11 458 13 490 6.15e-45 164
Msa1121300 AT5G17050.1 25.263 475 323 10 1 459 1 459 1.72e-44 162
Msa1121300 AT2G15490.3 27.711 498 292 17 6 456 1 477 1.23e-43 160
Msa1121300 AT5G38040.1 28.632 468 267 18 20 456 18 449 1.34e-43 159
Msa1121300 AT3G46660.1 27.195 467 285 13 14 454 16 453 1.37e-43 159
Msa1121300 AT3G46670.1 27.926 487 277 17 1 454 1 446 2.41e-43 159
Msa1121300 AT2G16890.2 28.980 490 300 20 5 463 2 474 2.56e-43 159
Msa1121300 AT3G55700.1 28.033 478 292 15 9 461 5 455 2.64e-43 159
Msa1121300 AT2G29740.1 27.216 485 301 14 9 456 5 474 3.28e-43 159
Msa1121300 AT2G15490.1 27.545 501 292 17 6 456 1 480 3.33e-43 159
Msa1121300 AT5G05870.1 29.247 465 287 15 14 456 10 454 4.05e-43 158
Msa1121300 AT2G29730.1 27.542 472 301 17 9 453 2 459 7.39e-43 157
Msa1121300 AT3G46650.1 28.051 467 282 17 1 452 1 428 1.09e-42 156
Msa1121300 AT1G10400.1 28.067 481 291 18 9 456 4 462 2.91e-42 156
Msa1121300 AT3G11340.1 27.332 461 295 15 4 449 2 437 9.12e-42 154
Msa1121300 AT1G07250.1 27.607 489 300 17 8 458 2 474 1.71e-41 154
Msa1121300 AT2G29710.1 26.722 479 312 16 9 461 2 467 4.05e-41 153
Msa1121300 AT1G07240.1 25.813 492 305 16 9 457 2 476 4.48e-41 153
Msa1121300 AT2G15480.1 27.237 503 293 23 3 456 2 480 5.73e-41 153
Msa1121300 AT3G46690.1 27.586 464 290 12 14 456 11 449 8.29e-41 152
Msa1121300 AT3G55710.1 27.637 474 295 17 14 462 10 460 1.23e-40 151
Msa1121300 AT2G15480.2 26.758 512 294 23 3 456 2 490 2.12e-40 151
Msa1121300 AT5G14860.1 27.105 487 302 21 8 456 4 475 3.14e-40 151
Msa1121300 AT5G38010.1 27.743 483 292 15 1 456 1 453 3.73e-40 150
Msa1121300 AT2G36790.1 27.435 503 295 18 11 463 12 494 1.25e-39 149
Msa1121300 AT5G17040.1 24.449 454 321 11 12 459 5 442 1.34e-39 148
Msa1121300 AT3G21800.1 27.686 484 290 16 16 456 9 475 2.58e-39 148
Msa1121300 AT5G05880.1 26.360 478 286 16 8 454 4 446 2.58e-39 147
Msa1121300 AT1G01420.1 27.542 472 292 15 12 451 8 461 2.65e-39 148
Msa1121300 AT1G01420.2 27.542 472 292 15 12 451 11 464 3.90e-39 148
Msa1121300 AT3G53160.1 26.939 490 308 18 11 460 7 486 4.26e-39 148
Msa1121300 AT3G53150.1 26.275 510 316 16 1 458 10 511 1.59e-38 147
Msa1121300 AT3G16520.3 29.558 362 227 10 109 455 110 458 2.94e-38 145
Msa1121300 AT3G46680.1 26.722 479 271 19 14 454 11 447 3.16e-38 144
Msa1121300 AT2G29750.1 26.667 480 299 14 14 456 10 473 6.85e-38 144
Msa1121300 AT2G16890.3 29.087 416 252 17 5 393 2 401 6.88e-38 143
Msa1121300 AT4G34135.1 28.235 425 244 19 9 392 8 412 1.17e-37 144
Msa1121300 AT4G34131.1 27.146 501 284 22 9 456 7 479 1.19e-37 144
Msa1121300 AT3G22250.1 27.069 447 292 13 8 429 4 441 2.70e-37 142
Msa1121300 AT3G46720.1 28.200 461 282 18 14 456 11 440 3.30e-37 142
Msa1121300 AT4G36770.1 29.832 476 255 21 11 439 3 446 4.22e-37 142
Msa1121300 AT5G05900.1 25.800 469 299 14 8 454 4 445 6.64e-37 141
Msa1121300 AT3G21750.1 27.049 488 292 15 11 456 3 468 1.45e-36 140
Msa1121300 AT1G01390.1 26.752 471 302 11 12 453 8 464 1.46e-36 140
Msa1121300 AT1G01390.2 26.752 471 302 11 12 453 25 481 1.65e-36 140
Msa1121300 AT3G46700.1 25.983 458 300 12 14 456 11 444 2.39e-36 139
Msa1121300 AT4G34138.1 26.434 488 286 18 6 445 5 467 2.55e-36 140
Msa1121300 AT5G26310.1 25.581 473 298 18 12 449 7 460 2.56e-36 140
Msa1121300 AT5G03490.1 26.446 484 301 14 3 459 10 465 2.81e-36 139
Msa1121300 AT1G22370.1 31.457 302 186 8 168 457 14 306 4.36e-36 135
Msa1121300 AT3G21760.1 26.000 500 294 14 11 456 3 480 4.53e-36 139
Msa1121300 AT3G21790.1 28.676 408 241 13 16 386 8 402 8.99e-36 139
Msa1121300 AT3G16520.2 30.435 322 200 9 109 415 110 422 1.63e-35 137
Msa1121300 AT3G16520.1 30.435 322 200 9 109 415 110 422 1.76e-35 137
Msa1121300 AT1G07260.1 32.700 263 159 5 206 457 217 472 2.59e-35 137
Msa1121300 AT1G30530.1 23.729 472 312 14 9 459 9 453 7.01e-35 135
Msa1121300 AT1G73880.1 25.673 483 299 19 12 460 14 470 1.35e-34 135
Msa1121300 AT5G66690.1 27.234 470 284 18 12 445 7 454 1.73e-34 135
Msa1121300 AT4G15280.1 25.151 497 299 12 11 458 3 475 2.05e-34 134
Msa1121300 AT5G17030.1 23.276 464 323 11 1 448 1 447 2.27e-34 134
Msa1121300 AT5G05860.1 27.097 465 299 15 10 457 7 448 2.74e-34 134
Msa1121300 AT4G15280.2 25.151 497 299 12 11 458 35 507 3.20e-34 134
Msa1121300 AT1G51210.1 26.869 428 274 16 12 423 20 424 4.92e-34 132
Msa1121300 AT5G05890.1 25.720 486 290 20 8 456 4 455 1.66e-32 129
Msa1121300 AT5G17040.2 28.800 250 164 5 212 459 103 340 4.11e-32 125
Msa1121300 AT3G50740.1 25.462 487 287 16 12 449 7 466 4.24e-32 128
Msa1121300 AT3G21780.1 25.562 489 297 13 11 454 3 469 1.03e-31 127
Msa1121300 AT5G12890.1 25.152 493 302 15 9 454 7 479 3.14e-31 125
Msa1121300 AT4G15260.1 28.378 370 209 11 125 458 7 356 5.41e-31 123
Msa1121300 AT2G18570.1 32.258 217 130 5 260 459 253 469 3.61e-30 122
Msa1121300 AT5G49690.1 27.232 448 279 18 11 434 9 433 1.41e-29 120
Msa1121300 AT2G18560.1 33.028 218 129 5 260 460 163 380 3.52e-29 118
Msa1121300 AT2G26480.1 25.053 471 300 14 9 456 5 445 8.47e-29 118
Msa1121300 AT2G22590.1 25.458 491 293 21 11 463 14 469 5.66e-28 116
Msa1121300 AT1G06000.1 26.556 482 273 17 5 456 3 433 9.93e-28 115
Msa1121300 AT5G65550.1 25.386 453 275 18 11 427 8 433 1.64e-27 115
Msa1121300 AT5G37950.1 26.774 310 191 7 82 373 56 347 1.02e-24 105
Msa1121300 AT5G53990.1 24.717 441 289 15 9 432 3 417 2.89e-24 105
Msa1121300 AT1G64910.1 24.145 468 302 14 9 456 3 437 5.70e-24 104
Msa1121300 AT4G27570.1 24.835 455 278 17 12 436 7 427 2.49e-23 102
Msa1121300 AT4G27560.1 25.446 448 276 16 12 432 7 423 3.35e-23 102
Msa1121300 AT5G37950.2 26.645 304 193 7 82 373 56 341 9.08e-23 99.4
Msa1121300 AT5G54010.1 23.937 447 285 16 12 432 6 423 3.21e-22 99.4
Msa1121300 AT5G54060.1 23.958 480 313 14 8 455 9 468 7.14e-21 95.5
Msa1121300 AT3G29630.1 24.714 437 283 16 12 430 6 414 1.34e-18 88.6
Msa1121300 AT4G09500.2 22.976 457 275 14 12 434 6 419 2.09e-18 87.8
Msa1121300 AT2G22930.1 22.517 453 297 13 10 439 4 425 4.33e-18 86.7
Msa1121300 AT4G34135.2 26.012 346 200 17 9 318 8 333 3.26e-17 83.2
Msa1121300 AT1G64920.1 23.261 460 291 16 9 439 3 429 3.84e-17 84.0
Msa1121300 AT1G50580.1 23.733 434 287 14 12 427 6 413 4.40e-17 84.0
Msa1121300 AT3G29630.2 23.636 440 258 15 12 430 6 388 6.07e-16 80.1
Msa1121300 AT4G09500.1 29.545 176 116 3 267 434 219 394 1.36e-15 79.0
Msa1121300 AT4G01070.2 25.439 342 179 10 8 312 4 306 2.65e-15 77.4
Msa1121300 AT2G16890.4 26.316 323 197 15 5 302 2 308 4.61e-12 67.4
Msa1121300 AT2G16890.1 26.316 323 197 15 5 302 2 308 4.61e-12 67.4

Find 92 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGAATTATTTGGCAATTT+AGG 0.137525 7_3:+71366160 None:intergenic
AATTGTATTTGAATAAATTT+TGG 0.160289 7_3:-71366075 Msa1121300:CDS
TCAATTGTAATGGAATTATT+TGG 0.181748 7_3:+71366151 None:intergenic
AGATCCAACCTTTCTTGATT+TGG 0.205723 7_3:-71365759 Msa1121300:CDS
TTATGTTTCATTTGGGAGTA+TGG 0.241418 7_3:-71364941 Msa1121300:CDS
GATCCAACCTTTCTTGATTT+GGG 0.258512 7_3:-71365758 Msa1121300:CDS
TGAAGACTTGGTCCAACTTT+AGG 0.282659 7_3:-71365095 Msa1121300:CDS
CAAAGTTTCTTGTAGATGTT+TGG 0.283012 7_3:-71364630 Msa1121300:CDS
ATGGACACTCTTGGTGGATA+TGG 0.283697 7_3:+71366309 None:intergenic
TCTGTTGTTTATGTTTCATT+TGG 0.285265 7_3:-71364949 Msa1121300:CDS
TATATACTATCATGTTCATT+TGG 0.297196 7_3:-71365882 Msa1121300:CDS
CTTGTAGATGTTTGGAAAGT+AGG 0.306863 7_3:-71364622 Msa1121300:CDS
GTTAAAGATGATGAAGATTA+TGG 0.348415 7_3:-71365030 Msa1121300:CDS
CACATAGCTGATTGGATCCT+TGG 0.353692 7_3:-71365713 Msa1121300:CDS
CTGTTGTTTATGTTTCATTT+GGG 0.359788 7_3:-71364948 Msa1121300:CDS
CATGAGCTAGAACCTCTAAC+TGG 0.362003 7_3:+71364764 None:intergenic
TAAAGTGGCATTGCAACAAT+TGG 0.372127 7_3:+71364673 None:intergenic
GGCATGGTGCTCCCAGTTAG+AGG 0.373163 7_3:-71364776 Msa1121300:CDS
CACCAAGAGTGTCCATTGTT+TGG 0.383032 7_3:-71366302 Msa1121300:CDS
ACATTGGAAGCTTTGAGTAT+AGG 0.385135 7_3:-71364700 Msa1121300:CDS
TTTATGATTCATTCATGCCT+TGG 0.386321 7_3:-71365976 Msa1121300:CDS
TGGCAATTCCTTCTTTGAGC+TGG 0.389978 7_3:-71365693 Msa1121300:CDS
GTTCTAGCTCATGAAGCAAT+AGG 0.390537 7_3:-71364754 Msa1121300:CDS
CTAATATTCACATAGCTGAT+TGG 0.394988 7_3:-71365721 Msa1121300:CDS
ATTAATTTGTGGTTGAAACT+TGG 0.397674 7_3:+71364401 None:intergenic
GGATTGTATATGTGAAATAA+TGG 0.405052 7_3:-71364548 Msa1121300:CDS
ATTGATCAAGAATTAATTTG+TGG 0.410547 7_3:+71364390 None:intergenic
ATATACTATCATGTTCATTT+GGG 0.411474 7_3:-71365881 Msa1121300:CDS
ACATAAACAACAGACCGTTT+TGG 0.414991 7_3:+71364958 None:intergenic
TTTGTCAAAACCATCAGAAA+TGG 0.439695 7_3:+71366126 None:intergenic
ATTTGTTTCTCATCAACTAA+AGG 0.445434 7_3:+71364592 None:intergenic
GCAAAGGAATTTCGAATTGT+TGG 0.452294 7_3:-71365941 Msa1121300:CDS
CTCTTTCTCCAGCTCAAAGA+AGG 0.453168 7_3:+71365685 None:intergenic
CTTCTTTGAGCTGGAGAAAG+AGG 0.460334 7_3:-71365684 Msa1121300:intron
ATGCTTTGTAGGTGGCTGAT+TGG 0.461540 7_3:-71365122 Msa1121300:intron
AGAAATGGTCTCAATTGTAA+TGG 0.467504 7_3:+71366141 None:intergenic
GCAAGAGCGGTTGGTAAAGA+TGG 0.472152 7_3:-71364466 Msa1121300:CDS
TCATATGTAAAGTAGAAAGA+AGG 0.475384 7_3:+71365785 None:intergenic
AGTGAGAAAAGATACATTGA+AGG 0.476733 7_3:-71364569 Msa1121300:CDS
ACTCAATGAGGAACAAATAG+AGG 0.483111 7_3:-71364914 Msa1121300:CDS
TTTGAAAAGAAATCAGAGAA+TGG 0.483547 7_3:-71364808 Msa1121300:CDS
GCACATTGTTTGAAAGATTG+TGG 0.490834 7_3:-71364886 Msa1121300:CDS
TTCTAGCTCATGAAGCAATA+GGG 0.491607 7_3:-71364753 Msa1121300:CDS
ATAATGGATATGAGTGAGAA+AGG 0.493502 7_3:-71364532 Msa1121300:CDS
AACCTTTCTTGATTTGGGAA+TGG 0.494501 7_3:-71365753 Msa1121300:CDS
GTGTGACCATGTGCTGGAAA+TGG 0.499562 7_3:+71366274 None:intergenic
GGCTAAATAATAAGCCAAAA+CGG 0.501669 7_3:-71364972 Msa1121300:CDS
CGCCATTCCCAAATCAAGAA+AGG 0.504292 7_3:+71365751 None:intergenic
CACTTCCTCAACTACAACCT+AGG 0.504525 7_3:-71365814 Msa1121300:CDS
GAAACTTTGCATCAATGCCT+TGG 0.505772 7_3:+71364644 None:intergenic
AGCTTGGAGAATTCTAGCAT+TGG 0.506357 7_3:+71366247 None:intergenic
GGTTGTAGTTGAGGAAGTGC+AGG 0.512659 7_3:+71365818 None:intergenic
GTAATCTCTTGCTCAACAAA+GGG 0.518356 7_3:+71365845 None:intergenic
GTGTTGCCATTTCCAGCACA+TGG 0.520176 7_3:-71366280 Msa1121300:CDS
AGGCCCTACGGTCCTAAAGT+TGG 0.523956 7_3:+71365083 None:intergenic
CACCAAACAATGGACACTCT+TGG 0.533421 7_3:+71366300 None:intergenic
ATGTTGTTGTTGTAAAAGCT+TGG 0.534474 7_3:+71366231 None:intergenic
CTGATTGGACAATGAAGACT+TGG 0.538261 7_3:-71365107 Msa1121300:CDS
ACTTTGGCTGCAAGAGCGGT+TGG 0.544404 7_3:-71364475 Msa1121300:CDS
ATTCCCAAATCAAGAAAGGT+TGG 0.546522 7_3:+71365755 None:intergenic
AGTAATCTCTTGCTCAACAA+AGG 0.547998 7_3:+71365844 None:intergenic
AAAGTGGCATTGCAACAATT+GGG 0.549651 7_3:+71364674 None:intergenic
TGGTCCAACTTTAGGACCGT+AGG 0.551613 7_3:-71365087 Msa1121300:CDS
ATAAGATCAGCAAGAGATTG+TGG 0.551665 7_3:+71366043 None:intergenic
GGATTAGTGTGACCATGTGC+TGG 0.558725 7_3:+71366268 None:intergenic
ATCTCTTGCTCAACAAAGGG+AGG 0.564142 7_3:+71365848 None:intergenic
TAGAAAGAAGGCATGTCCCT+AGG 0.564966 7_3:+71365797 None:intergenic
AAAGCGACGAAAGTATAGAA+TGG 0.567278 7_3:-71364993 Msa1121300:CDS
CAAACAATGGACACTCTTGG+TGG 0.573270 7_3:+71366303 None:intergenic
TGTCATGCAATGGAAGACTT+TGG 0.576697 7_3:-71364491 Msa1121300:CDS
AGGTGGAGTTGCTGAAGCAA+AGG 0.577638 7_3:-71366104 Msa1121300:CDS
ACAATTGAGACCATTTCTGA+TGG 0.581663 7_3:-71366136 Msa1121300:CDS
TGGGAGCTTAGTCTCTTCAG+AGG 0.586731 7_3:+71364837 None:intergenic
GAAGACTTTGGCTGCAAGAG+CGG 0.591185 7_3:-71364479 Msa1121300:CDS
ATCAGAGAATGGCTTAGTTG+TGG 0.592983 7_3:-71364797 Msa1121300:CDS
GGTCCAACTTTAGGACCGTA+GGG 0.599900 7_3:-71365086 Msa1121300:CDS
ATGCCTTGGTCTGAGTAAAG+TGG 0.604432 7_3:+71364658 None:intergenic
ATGTCCCTAGGTTGTAGTTG+AGG 0.604747 7_3:+71365809 None:intergenic
ACTTCCTCAACTACAACCTA+GGG 0.613689 7_3:-71365813 Msa1121300:CDS
ATACGGTAGGCAAGGCCCTA+CGG 0.617547 7_3:+71365071 None:intergenic
ATGAGCTAGAACCTCTAACT+GGG 0.620178 7_3:+71364765 None:intergenic
TTATGAATAATGTCATGCAA+TGG 0.621729 7_3:-71364501 Msa1121300:CDS
CATAAATAAGACAATCAACA+TGG 0.624458 7_3:+71365993 None:intergenic
ATGCCACTTTACTCAGACCA+AGG 0.625688 7_3:-71364661 Msa1121300:CDS
GAAATGGCAACACCAAACAA+TGG 0.627949 7_3:+71366290 None:intergenic
GCTCAAAGAAGGAATTGCCA+AGG 0.642523 7_3:+71365696 None:intergenic
TTGTGGTTGGAATTCCACAT+TGG 0.669756 7_3:-71364716 Msa1121300:CDS
TTGGTGCTTAGATGTTGCAA+AGG 0.669944 7_3:-71365957 Msa1121300:CDS
GAGTATGGCATCACTCAATG+AGG 0.672707 7_3:-71364926 Msa1121300:CDS
TATACTCAAAGCTTCCAATG+TGG 0.673363 7_3:+71364702 None:intergenic
AGAATGGCTTAGTTGTGGCA+TGG 0.681734 7_3:-71364792 Msa1121300:CDS
TTTGCAACATCTAAGCACCA+AGG 0.710888 7_3:+71365959 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTGTATTTGAATAAATTT+TGG - chr7_3:71364649-71364668 Msa1121300:CDS 10.0%
!!! AATTGTATTTGAATAAATTT+TGG - chr7_3:71364649-71364668 Msa1121300:CDS 10.0%
!!! GAAATTTTAACATAATCAAA+TGG + chr7_3:71365122-71365141 None:intergenic 15.0%
!!! TTTTAGACATATAGTTTATA+AGG + chr7_3:71365287-71365306 None:intergenic 15.0%
!!! GAAATTTTAACATAATCAAA+TGG + chr7_3:71365122-71365141 None:intergenic 15.0%
!!! TTTTAGACATATAGTTTATA+AGG + chr7_3:71365287-71365306 None:intergenic 15.0%
!!! TCAATTGTAATGGAATTATT+TGG + chr7_3:71364576-71364595 None:intergenic 20.0%
!! TATATACTATCATGTTCATT+TGG - chr7_3:71364842-71364861 Msa1121300:CDS 20.0%
!! ATATACTATCATGTTCATTT+GGG - chr7_3:71364843-71364862 Msa1121300:CDS 20.0%
!! TGTACAAATATCATTTCTTA+AGG + chr7_3:71365153-71365172 None:intergenic 20.0%
!! AAAATAAAAGAGAGATAAAG+AGG - chr7_3:71365226-71365245 Msa1121300:intron 20.0%
!! AAATAAAAGAGAGATAAAGA+GGG - chr7_3:71365227-71365246 Msa1121300:intron 20.0%
!! TGTTATAATCTAGTGTTTAT+AGG + chr7_3:71365392-71365411 None:intergenic 20.0%
!!! ATTTCTTTTCAAAGTCTTTT+GGG + chr7_3:71365909-71365928 None:intergenic 20.0%
!!! TCAATTGTAATGGAATTATT+TGG + chr7_3:71364576-71364595 None:intergenic 20.0%
!! TATATACTATCATGTTCATT+TGG - chr7_3:71364842-71364861 Msa1121300:CDS 20.0%
!! ATATACTATCATGTTCATTT+GGG - chr7_3:71364843-71364862 Msa1121300:CDS 20.0%
!! TGTACAAATATCATTTCTTA+AGG + chr7_3:71365153-71365172 None:intergenic 20.0%
!! AAAATAAAAGAGAGATAAAG+AGG - chr7_3:71365226-71365245 Msa1121300:intron 20.0%
!! AAATAAAAGAGAGATAAAGA+GGG - chr7_3:71365227-71365246 Msa1121300:intron 20.0%
!! TGTTATAATCTAGTGTTTAT+AGG + chr7_3:71365392-71365411 None:intergenic 20.0%
!!! ATTTCTTTTCAAAGTCTTTT+GGG + chr7_3:71365909-71365928 None:intergenic 20.0%
!!! TATGTTTTTGTAGTAGGAAA+GGG + chr7_3:71364544-71364563 None:intergenic 25.0%
!!! TTTAGGTATGTTTTTGTAGT+AGG + chr7_3:71364550-71364569 None:intergenic 25.0%
! ATGGAATTATTTGGCAATTT+AGG + chr7_3:71364567-71364586 None:intergenic 25.0%
!!! TTGAATAAATTTTGGCAACT+TGG - chr7_3:71364657-71364676 Msa1121300:CDS 25.0%
! CATAAATAAGACAATCAACA+TGG + chr7_3:71364734-71364753 None:intergenic 25.0%
! TCATATGTAAAGTAGAAAGA+AGG + chr7_3:71364942-71364961 None:intergenic 25.0%
! AAAGAGGTAAGTAAGAATTT+GGG - chr7_3:71365056-71365075 Msa1121300:CDS 25.0%
! TCTCAAAAGTTGTCATAAAA+TGG + chr7_3:71365177-71365196 None:intergenic 25.0%
! ATAACAAAAACATGTGTATG+AGG - chr7_3:71365406-71365425 Msa1121300:intron 25.0%
! AATTTCTACAACACTTTAGA+TGG + chr7_3:71365482-71365501 None:intergenic 25.0%
! ATTCAATTGGTAAATGCTTA+AGG + chr7_3:71365534-71365553 None:intergenic 25.0%
! TATCTAAAAATGTATACGGT+AGG + chr7_3:71365669-71365688 None:intergenic 25.0%
! CGCTTATCTAAAAATGTATA+CGG + chr7_3:71365673-71365692 None:intergenic 25.0%
! GTTAAAGATGATGAAGATTA+TGG - chr7_3:71365694-71365713 Msa1121300:CDS 25.0%
!! TCTGTTGTTTATGTTTCATT+TGG - chr7_3:71365775-71365794 Msa1121300:CDS 25.0%
!! CTGTTGTTTATGTTTCATTT+GGG - chr7_3:71365776-71365795 Msa1121300:CDS 25.0%
!!! ATTGTGGAAGTTACTTTTTA+TGG - chr7_3:71365854-71365873 Msa1121300:CDS 25.0%
!!! TTGTGGAAGTTACTTTTTAT+GGG - chr7_3:71365855-71365874 Msa1121300:CDS 25.0%
!! GATTTCTTTTCAAAGTCTTT+TGG + chr7_3:71365910-71365929 None:intergenic 25.0%
! TTTGAAAAGAAATCAGAGAA+TGG - chr7_3:71365916-71365935 Msa1121300:CDS 25.0%
!! ATTTGTTTCTCATCAACTAA+AGG + chr7_3:71366135-71366154 None:intergenic 25.0%
! GGATTGTATATGTGAAATAA+TGG - chr7_3:71366176-71366195 Msa1121300:CDS 25.0%
! TTATGAATAATGTCATGCAA+TGG - chr7_3:71366223-71366242 Msa1121300:CDS 25.0%
!!! TATGTTTTTGTAGTAGGAAA+GGG + chr7_3:71364544-71364563 None:intergenic 25.0%
!!! TTTAGGTATGTTTTTGTAGT+AGG + chr7_3:71364550-71364569 None:intergenic 25.0%
! ATGGAATTATTTGGCAATTT+AGG + chr7_3:71364567-71364586 None:intergenic 25.0%
!!! TTGAATAAATTTTGGCAACT+TGG - chr7_3:71364657-71364676 Msa1121300:CDS 25.0%
! CATAAATAAGACAATCAACA+TGG + chr7_3:71364734-71364753 None:intergenic 25.0%
! TCATATGTAAAGTAGAAAGA+AGG + chr7_3:71364942-71364961 None:intergenic 25.0%
! AAAGAGGTAAGTAAGAATTT+GGG - chr7_3:71365056-71365075 Msa1121300:CDS 25.0%
! TCTCAAAAGTTGTCATAAAA+TGG + chr7_3:71365177-71365196 None:intergenic 25.0%
! ATAACAAAAACATGTGTATG+AGG - chr7_3:71365406-71365425 Msa1121300:intron 25.0%
! AATTTCTACAACACTTTAGA+TGG + chr7_3:71365482-71365501 None:intergenic 25.0%
! ATTCAATTGGTAAATGCTTA+AGG + chr7_3:71365534-71365553 None:intergenic 25.0%
! TATCTAAAAATGTATACGGT+AGG + chr7_3:71365669-71365688 None:intergenic 25.0%
! CGCTTATCTAAAAATGTATA+CGG + chr7_3:71365673-71365692 None:intergenic 25.0%
! GTTAAAGATGATGAAGATTA+TGG - chr7_3:71365694-71365713 Msa1121300:CDS 25.0%
!! TCTGTTGTTTATGTTTCATT+TGG - chr7_3:71365775-71365794 Msa1121300:CDS 25.0%
!! CTGTTGTTTATGTTTCATTT+GGG - chr7_3:71365776-71365795 Msa1121300:CDS 25.0%
!!! ATTGTGGAAGTTACTTTTTA+TGG - chr7_3:71365854-71365873 Msa1121300:CDS 25.0%
!!! TTGTGGAAGTTACTTTTTAT+GGG - chr7_3:71365855-71365874 Msa1121300:CDS 25.0%
!! GATTTCTTTTCAAAGTCTTT+TGG + chr7_3:71365910-71365929 None:intergenic 25.0%
! TTTGAAAAGAAATCAGAGAA+TGG - chr7_3:71365916-71365935 Msa1121300:CDS 25.0%
!! ATTTGTTTCTCATCAACTAA+AGG + chr7_3:71366135-71366154 None:intergenic 25.0%
! GGATTGTATATGTGAAATAA+TGG - chr7_3:71366176-71366195 Msa1121300:CDS 25.0%
! TTATGAATAATGTCATGCAA+TGG - chr7_3:71366223-71366242 Msa1121300:CDS 25.0%
! ATGTTGTTGTTGTAAAAGCT+TGG + chr7_3:71364496-71364515 None:intergenic 30.0%
! AAGCTTTTACAACAACAACA+TGG - chr7_3:71364495-71364514 Msa1121300:CDS 30.0%
!! GTATGTTTTTGTAGTAGGAA+AGG + chr7_3:71364545-71364564 None:intergenic 30.0%
AGAAATGGTCTCAATTGTAA+TGG + chr7_3:71364586-71364605 None:intergenic 30.0%
TTTGTCAAAACCATCAGAAA+TGG + chr7_3:71364601-71364620 None:intergenic 30.0%
!!! ATTTCTGATGGTTTTGACAA+AGG - chr7_3:71364600-71364619 Msa1121300:CDS 30.0%
TTTATGATTCATTCATGCCT+TGG - chr7_3:71364748-71364767 Msa1121300:CDS 30.0%
CTAATATTCACATAGCTGAT+TGG - chr7_3:71365003-71365022 Msa1121300:CDS 30.0%
GAAAGAGGTAAGTAAGAATT+TGG - chr7_3:71365055-71365074 Msa1121300:CDS 30.0%
ATAATCAAATGGTTGTCGTT+TGG + chr7_3:71365111-71365130 None:intergenic 30.0%
AATGACTCTAAATGCTTTGT+AGG - chr7_3:71365591-71365610 Msa1121300:intron 30.0%
GGCTAAATAATAAGCCAAAA+CGG - chr7_3:71365752-71365771 Msa1121300:CDS 30.0%
TTATGTTTCATTTGGGAGTA+TGG - chr7_3:71365783-71365802 Msa1121300:CDS 30.0%
CAAAGTTTCTTGTAGATGTT+TGG - chr7_3:71366094-71366113 Msa1121300:CDS 30.0%
AGTGAGAAAAGATACATTGA+AGG - chr7_3:71366155-71366174 Msa1121300:CDS 30.0%
!! ATAATGGATATGAGTGAGAA+AGG - chr7_3:71366192-71366211 Msa1121300:CDS 30.0%
! ATGTTGTTGTTGTAAAAGCT+TGG + chr7_3:71364496-71364515 None:intergenic 30.0%
! AAGCTTTTACAACAACAACA+TGG - chr7_3:71364495-71364514 Msa1121300:CDS 30.0%
!! GTATGTTTTTGTAGTAGGAA+AGG + chr7_3:71364545-71364564 None:intergenic 30.0%
AGAAATGGTCTCAATTGTAA+TGG + chr7_3:71364586-71364605 None:intergenic 30.0%
TTTGTCAAAACCATCAGAAA+TGG + chr7_3:71364601-71364620 None:intergenic 30.0%
!!! ATTTCTGATGGTTTTGACAA+AGG - chr7_3:71364600-71364619 Msa1121300:CDS 30.0%
TTTATGATTCATTCATGCCT+TGG - chr7_3:71364748-71364767 Msa1121300:CDS 30.0%
CTAATATTCACATAGCTGAT+TGG - chr7_3:71365003-71365022 Msa1121300:CDS 30.0%
GAAAGAGGTAAGTAAGAATT+TGG - chr7_3:71365055-71365074 Msa1121300:CDS 30.0%
ATAATCAAATGGTTGTCGTT+TGG + chr7_3:71365111-71365130 None:intergenic 30.0%
AATGACTCTAAATGCTTTGT+AGG - chr7_3:71365591-71365610 Msa1121300:intron 30.0%
GGCTAAATAATAAGCCAAAA+CGG - chr7_3:71365752-71365771 Msa1121300:CDS 30.0%
TTATGTTTCATTTGGGAGTA+TGG - chr7_3:71365783-71365802 Msa1121300:CDS 30.0%
CAAAGTTTCTTGTAGATGTT+TGG - chr7_3:71366094-71366113 Msa1121300:CDS 30.0%
AGTGAGAAAAGATACATTGA+AGG - chr7_3:71366155-71366174 Msa1121300:CDS 30.0%
!! ATAATGGATATGAGTGAGAA+AGG - chr7_3:71366192-71366211 Msa1121300:CDS 30.0%
ACAATTGAGACCATTTCTGA+TGG - chr7_3:71364588-71364607 Msa1121300:CDS 35.0%
ATAAGATCAGCAAGAGATTG+TGG + chr7_3:71364684-71364703 None:intergenic 35.0%
GCAAAGGAATTTCGAATTGT+TGG - chr7_3:71364783-71364802 Msa1121300:CDS 35.0%
GTAATCTCTTGCTCAACAAA+GGG + chr7_3:71364882-71364901 None:intergenic 35.0%
AGTAATCTCTTGCTCAACAA+AGG + chr7_3:71364883-71364902 None:intergenic 35.0%
AGATCCAACCTTTCTTGATT+TGG - chr7_3:71364965-71364984 Msa1121300:CDS 35.0%
GATCCAACCTTTCTTGATTT+GGG - chr7_3:71364966-71364985 Msa1121300:CDS 35.0%
ATTCCCAAATCAAGAAAGGT+TGG + chr7_3:71364972-71364991 None:intergenic 35.0%
!! AACCTTTCTTGATTTGGGAA+TGG - chr7_3:71364971-71364990 Msa1121300:CDS 35.0%
TAAAAGAGAGATAAAGAGGG+AGG - chr7_3:71365230-71365249 Msa1121300:intron 35.0%
AAAAGAGAGATAAAGAGGGA+GGG - chr7_3:71365231-71365250 Msa1121300:intron 35.0%
GGCTAACAAAAGAAAGAGAT+AGG + chr7_3:71365371-71365390 None:intergenic 35.0%
CATACAAGTGGTGATTCAAT+TGG + chr7_3:71365547-71365566 None:intergenic 35.0%
TTACAAAAGCAGCATACAAG+TGG + chr7_3:71365559-71365578 None:intergenic 35.0%
!!! CTTGTATGCTGCTTTTGTAA+AGG - chr7_3:71365559-71365578 Msa1121300:intron 35.0%
AAAAATGTATACGGTAGGCA+AGG + chr7_3:71365664-71365683 None:intergenic 35.0%
! AAAGCGACGAAAGTATAGAA+TGG - chr7_3:71365731-71365750 Msa1121300:CDS 35.0%
! ACATAAACAACAGACCGTTT+TGG + chr7_3:71365769-71365788 None:intergenic 35.0%
ACTCAATGAGGAACAAATAG+AGG - chr7_3:71365810-71365829 Msa1121300:CDS 35.0%
GCACATTGTTTGAAAGATTG+TGG - chr7_3:71365838-71365857 Msa1121300:CDS 35.0%
!! TTCTAGCTCATGAAGCAATA+GGG - chr7_3:71365971-71365990 Msa1121300:CDS 35.0%
! GTTTTGTAACACATTGTGGT+TGG - chr7_3:71365995-71366014 Msa1121300:CDS 35.0%
TATACTCAAAGCTTCCAATG+TGG + chr7_3:71366025-71366044 None:intergenic 35.0%
!! ACATTGGAAGCTTTGAGTAT+AGG - chr7_3:71366024-71366043 Msa1121300:CDS 35.0%
AAAGTGGCATTGCAACAATT+GGG + chr7_3:71366053-71366072 None:intergenic 35.0%
TAAAGTGGCATTGCAACAAT+TGG + chr7_3:71366054-71366073 None:intergenic 35.0%
CTTGTAGATGTTTGGAAAGT+AGG - chr7_3:71366102-71366121 Msa1121300:CDS 35.0%
ACAATTGAGACCATTTCTGA+TGG - chr7_3:71364588-71364607 Msa1121300:CDS 35.0%
ATAAGATCAGCAAGAGATTG+TGG + chr7_3:71364684-71364703 None:intergenic 35.0%
GCAAAGGAATTTCGAATTGT+TGG - chr7_3:71364783-71364802 Msa1121300:CDS 35.0%
GTAATCTCTTGCTCAACAAA+GGG + chr7_3:71364882-71364901 None:intergenic 35.0%
AGTAATCTCTTGCTCAACAA+AGG + chr7_3:71364883-71364902 None:intergenic 35.0%
AGATCCAACCTTTCTTGATT+TGG - chr7_3:71364965-71364984 Msa1121300:CDS 35.0%
GATCCAACCTTTCTTGATTT+GGG - chr7_3:71364966-71364985 Msa1121300:CDS 35.0%
ATTCCCAAATCAAGAAAGGT+TGG + chr7_3:71364972-71364991 None:intergenic 35.0%
!! AACCTTTCTTGATTTGGGAA+TGG - chr7_3:71364971-71364990 Msa1121300:CDS 35.0%
TAAAAGAGAGATAAAGAGGG+AGG - chr7_3:71365230-71365249 Msa1121300:intron 35.0%
AAAAGAGAGATAAAGAGGGA+GGG - chr7_3:71365231-71365250 Msa1121300:intron 35.0%
GGCTAACAAAAGAAAGAGAT+AGG + chr7_3:71365371-71365390 None:intergenic 35.0%
CATACAAGTGGTGATTCAAT+TGG + chr7_3:71365547-71365566 None:intergenic 35.0%
TTACAAAAGCAGCATACAAG+TGG + chr7_3:71365559-71365578 None:intergenic 35.0%
!!! CTTGTATGCTGCTTTTGTAA+AGG - chr7_3:71365559-71365578 Msa1121300:intron 35.0%
AAAAATGTATACGGTAGGCA+AGG + chr7_3:71365664-71365683 None:intergenic 35.0%
! AAAGCGACGAAAGTATAGAA+TGG - chr7_3:71365731-71365750 Msa1121300:CDS 35.0%
! ACATAAACAACAGACCGTTT+TGG + chr7_3:71365769-71365788 None:intergenic 35.0%
ACTCAATGAGGAACAAATAG+AGG - chr7_3:71365810-71365829 Msa1121300:CDS 35.0%
GCACATTGTTTGAAAGATTG+TGG - chr7_3:71365838-71365857 Msa1121300:CDS 35.0%
!! TTCTAGCTCATGAAGCAATA+GGG - chr7_3:71365971-71365990 Msa1121300:CDS 35.0%
! GTTTTGTAACACATTGTGGT+TGG - chr7_3:71365995-71366014 Msa1121300:CDS 35.0%
TATACTCAAAGCTTCCAATG+TGG + chr7_3:71366025-71366044 None:intergenic 35.0%
!! ACATTGGAAGCTTTGAGTAT+AGG - chr7_3:71366024-71366043 Msa1121300:CDS 35.0%
AAAGTGGCATTGCAACAATT+GGG + chr7_3:71366053-71366072 None:intergenic 35.0%
TAAAGTGGCATTGCAACAAT+TGG + chr7_3:71366054-71366073 None:intergenic 35.0%
CTTGTAGATGTTTGGAAAGT+AGG - chr7_3:71366102-71366121 Msa1121300:CDS 35.0%
GAAATGGCAACACCAAACAA+TGG + chr7_3:71364437-71364456 None:intergenic 40.0%
AGCTTGGAGAATTCTAGCAT+TGG + chr7_3:71364480-71364499 None:intergenic 40.0%
! GTTTTTGTAGTAGGAAAGGG+TGG + chr7_3:71364541-71364560 None:intergenic 40.0%
!!! TCTGATGGTTTTGACAAAGG+TGG - chr7_3:71364603-71364622 Msa1121300:CDS 40.0%
TTTGCAACATCTAAGCACCA+AGG + chr7_3:71364768-71364787 None:intergenic 40.0%
! TTGGTGCTTAGATGTTGCAA+AGG - chr7_3:71364767-71364786 Msa1121300:CDS 40.0%
ACTTCCTCAACTACAACCTA+GGG - chr7_3:71364911-71364930 Msa1121300:CDS 40.0%
TACTCGCATTGTGCTATACA+CGG - chr7_3:71365446-71365465 Msa1121300:intron 40.0%
GACTCTAAATGCTTTGTAGG+TGG - chr7_3:71365594-71365613 Msa1121300:intron 40.0%
CTGATTGGACAATGAAGACT+TGG - chr7_3:71365617-71365636 Msa1121300:intron 40.0%
! TGAAGACTTGGTCCAACTTT+AGG - chr7_3:71365629-71365648 Msa1121300:intron 40.0%
ATCAGAGAATGGCTTAGTTG+TGG - chr7_3:71365927-71365946 Msa1121300:CDS 40.0%
ATGAGCTAGAACCTCTAACT+GGG + chr7_3:71365962-71365981 None:intergenic 40.0%
!! GTTCTAGCTCATGAAGCAAT+AGG - chr7_3:71365970-71365989 Msa1121300:CDS 40.0%
! GGGTGTTTTGTAACACATTG+TGG - chr7_3:71365991-71366010 Msa1121300:CDS 40.0%
TTGTGGTTGGAATTCCACAT+TGG - chr7_3:71366008-71366027 Msa1121300:CDS 40.0%
GAAACTTTGCATCAATGCCT+TGG + chr7_3:71366083-71366102 None:intergenic 40.0%
TGTCATGCAATGGAAGACTT+TGG - chr7_3:71366233-71366252 Msa1121300:CDS 40.0%
GAAATGGCAACACCAAACAA+TGG + chr7_3:71364437-71364456 None:intergenic 40.0%
AGCTTGGAGAATTCTAGCAT+TGG + chr7_3:71364480-71364499 None:intergenic 40.0%
! GTTTTTGTAGTAGGAAAGGG+TGG + chr7_3:71364541-71364560 None:intergenic 40.0%
!!! TCTGATGGTTTTGACAAAGG+TGG - chr7_3:71364603-71364622 Msa1121300:CDS 40.0%
TTTGCAACATCTAAGCACCA+AGG + chr7_3:71364768-71364787 None:intergenic 40.0%
! TTGGTGCTTAGATGTTGCAA+AGG - chr7_3:71364767-71364786 Msa1121300:CDS 40.0%
ACTTCCTCAACTACAACCTA+GGG - chr7_3:71364911-71364930 Msa1121300:CDS 40.0%
TACTCGCATTGTGCTATACA+CGG - chr7_3:71365446-71365465 Msa1121300:intron 40.0%
GACTCTAAATGCTTTGTAGG+TGG - chr7_3:71365594-71365613 Msa1121300:intron 40.0%
CTGATTGGACAATGAAGACT+TGG - chr7_3:71365617-71365636 Msa1121300:intron 40.0%
! TGAAGACTTGGTCCAACTTT+AGG - chr7_3:71365629-71365648 Msa1121300:intron 40.0%
ATCAGAGAATGGCTTAGTTG+TGG - chr7_3:71365927-71365946 Msa1121300:CDS 40.0%
ATGAGCTAGAACCTCTAACT+GGG + chr7_3:71365962-71365981 None:intergenic 40.0%
!! GTTCTAGCTCATGAAGCAAT+AGG - chr7_3:71365970-71365989 Msa1121300:CDS 40.0%
! GGGTGTTTTGTAACACATTG+TGG - chr7_3:71365991-71366010 Msa1121300:CDS 40.0%
TTGTGGTTGGAATTCCACAT+TGG - chr7_3:71366008-71366027 Msa1121300:CDS 40.0%
GAAACTTTGCATCAATGCCT+TGG + chr7_3:71366083-71366102 None:intergenic 40.0%
TGTCATGCAATGGAAGACTT+TGG - chr7_3:71366233-71366252 Msa1121300:CDS 40.0%
! ATGGACACTCTTGGTGGATA+TGG + chr7_3:71364418-71364437 None:intergenic 45.0%
CAAACAATGGACACTCTTGG+TGG + chr7_3:71364424-71364443 None:intergenic 45.0%
!! CACCAAGAGTGTCCATTGTT+TGG - chr7_3:71364422-71364441 Msa1121300:CDS 45.0%
CACCAAACAATGGACACTCT+TGG + chr7_3:71364427-71364446 None:intergenic 45.0%
ATCTCTTGCTCAACAAAGGG+AGG + chr7_3:71364879-71364898 None:intergenic 45.0%
CACTTCCTCAACTACAACCT+AGG - chr7_3:71364910-71364929 Msa1121300:CDS 45.0%
ATGTCCCTAGGTTGTAGTTG+AGG + chr7_3:71364918-71364937 None:intergenic 45.0%
! TAGAAAGAAGGCATGTCCCT+AGG + chr7_3:71364930-71364949 None:intergenic 45.0%
CGCCATTCCCAAATCAAGAA+AGG + chr7_3:71364976-71364995 None:intergenic 45.0%
CACATAGCTGATTGGATCCT+TGG - chr7_3:71365011-71365030 Msa1121300:CDS 45.0%
GCTCAAAGAAGGAATTGCCA+AGG + chr7_3:71365031-71365050 None:intergenic 45.0%
TGGCAATTCCTTCTTTGAGC+TGG - chr7_3:71365031-71365050 Msa1121300:CDS 45.0%
CTCTTTCTCCAGCTCAAAGA+AGG + chr7_3:71365042-71365061 None:intergenic 45.0%
CTTCTTTGAGCTGGAGAAAG+AGG - chr7_3:71365040-71365059 Msa1121300:CDS 45.0%
CACAATGCGAGTAAAGCCTT+CGG + chr7_3:71365439-71365458 None:intergenic 45.0%
ATGCTTTGTAGGTGGCTGAT+TGG - chr7_3:71365602-71365621 Msa1121300:intron 45.0%
GAGTATGGCATCACTCAATG+AGG - chr7_3:71365798-71365817 Msa1121300:CDS 45.0%
AGAATGGCTTAGTTGTGGCA+TGG - chr7_3:71365932-71365951 Msa1121300:CDS 45.0%
CATGAGCTAGAACCTCTAAC+TGG + chr7_3:71365963-71365982 None:intergenic 45.0%
!! ATGCCACTTTACTCAGACCA+AGG - chr7_3:71366063-71366082 Msa1121300:CDS 45.0%
ATGCCTTGGTCTGAGTAAAG+TGG + chr7_3:71366069-71366088 None:intergenic 45.0%
! ATGGACACTCTTGGTGGATA+TGG + chr7_3:71364418-71364437 None:intergenic 45.0%
CAAACAATGGACACTCTTGG+TGG + chr7_3:71364424-71364443 None:intergenic 45.0%
!! CACCAAGAGTGTCCATTGTT+TGG - chr7_3:71364422-71364441 Msa1121300:CDS 45.0%
CACCAAACAATGGACACTCT+TGG + chr7_3:71364427-71364446 None:intergenic 45.0%
ATCTCTTGCTCAACAAAGGG+AGG + chr7_3:71364879-71364898 None:intergenic 45.0%
CACTTCCTCAACTACAACCT+AGG - chr7_3:71364910-71364929 Msa1121300:CDS 45.0%
ATGTCCCTAGGTTGTAGTTG+AGG + chr7_3:71364918-71364937 None:intergenic 45.0%
! TAGAAAGAAGGCATGTCCCT+AGG + chr7_3:71364930-71364949 None:intergenic 45.0%
CGCCATTCCCAAATCAAGAA+AGG + chr7_3:71364976-71364995 None:intergenic 45.0%
CACATAGCTGATTGGATCCT+TGG - chr7_3:71365011-71365030 Msa1121300:CDS 45.0%
GCTCAAAGAAGGAATTGCCA+AGG + chr7_3:71365031-71365050 None:intergenic 45.0%
TGGCAATTCCTTCTTTGAGC+TGG - chr7_3:71365031-71365050 Msa1121300:CDS 45.0%
CTCTTTCTCCAGCTCAAAGA+AGG + chr7_3:71365042-71365061 None:intergenic 45.0%
CTTCTTTGAGCTGGAGAAAG+AGG - chr7_3:71365040-71365059 Msa1121300:CDS 45.0%
CACAATGCGAGTAAAGCCTT+CGG + chr7_3:71365439-71365458 None:intergenic 45.0%
ATGCTTTGTAGGTGGCTGAT+TGG - chr7_3:71365602-71365621 Msa1121300:intron 45.0%
GAGTATGGCATCACTCAATG+AGG - chr7_3:71365798-71365817 Msa1121300:CDS 45.0%
AGAATGGCTTAGTTGTGGCA+TGG - chr7_3:71365932-71365951 Msa1121300:CDS 45.0%
CATGAGCTAGAACCTCTAAC+TGG + chr7_3:71365963-71365982 None:intergenic 45.0%
!! ATGCCACTTTACTCAGACCA+AGG - chr7_3:71366063-71366082 Msa1121300:CDS 45.0%
ATGCCTTGGTCTGAGTAAAG+TGG + chr7_3:71366069-71366088 None:intergenic 45.0%
! GTGTTGCCATTTCCAGCACA+TGG - chr7_3:71364444-71364463 Msa1121300:CDS 50.0%
GTGTGACCATGTGCTGGAAA+TGG + chr7_3:71364453-71364472 None:intergenic 50.0%
! GGATTAGTGTGACCATGTGC+TGG + chr7_3:71364459-71364478 None:intergenic 50.0%
AGGTGGAGTTGCTGAAGCAA+AGG - chr7_3:71364620-71364639 Msa1121300:CDS 50.0%
! GGTTGTAGTTGAGGAAGTGC+AGG + chr7_3:71364909-71364928 None:intergenic 50.0%
AGAGAGATAAAGAGGGAGGG+AGG - chr7_3:71365234-71365253 Msa1121300:intron 50.0%
GAGAGATAAAGAGGGAGGGA+GGG - chr7_3:71365235-71365254 Msa1121300:intron 50.0%
TGTATGAGGCCTAACTCCGA+AGG - chr7_3:71365420-71365439 Msa1121300:intron 50.0%
CGAGTAAAGCCTTCGGAGTT+AGG + chr7_3:71365432-71365451 None:intergenic 50.0%
CATTGTGCTATACACGGCTC+TGG - chr7_3:71365452-71365471 Msa1121300:intron 50.0%
!! TGGTCCAACTTTAGGACCGT+AGG - chr7_3:71365637-71365656 Msa1121300:intron 50.0%
!! GGTCCAACTTTAGGACCGTA+GGG - chr7_3:71365638-71365657 Msa1121300:intron 50.0%
TGGGAGCTTAGTCTCTTCAG+AGG + chr7_3:71365890-71365909 None:intergenic 50.0%
GAAGACTTTGGCTGCAAGAG+CGG - chr7_3:71366245-71366264 Msa1121300:CDS 50.0%
!! GCAAGAGCGGTTGGTAAAGA+TGG - chr7_3:71366258-71366277 Msa1121300:CDS 50.0%
! GTGTTGCCATTTCCAGCACA+TGG - chr7_3:71364444-71364463 Msa1121300:CDS 50.0%
GTGTGACCATGTGCTGGAAA+TGG + chr7_3:71364453-71364472 None:intergenic 50.0%
! GGATTAGTGTGACCATGTGC+TGG + chr7_3:71364459-71364478 None:intergenic 50.0%
AGGTGGAGTTGCTGAAGCAA+AGG - chr7_3:71364620-71364639 Msa1121300:CDS 50.0%
! GGTTGTAGTTGAGGAAGTGC+AGG + chr7_3:71364909-71364928 None:intergenic 50.0%
AGAGAGATAAAGAGGGAGGG+AGG - chr7_3:71365234-71365253 Msa1121300:intron 50.0%
GAGAGATAAAGAGGGAGGGA+GGG - chr7_3:71365235-71365254 Msa1121300:intron 50.0%
TGTATGAGGCCTAACTCCGA+AGG - chr7_3:71365420-71365439 Msa1121300:intron 50.0%
CGAGTAAAGCCTTCGGAGTT+AGG + chr7_3:71365432-71365451 None:intergenic 50.0%
CATTGTGCTATACACGGCTC+TGG - chr7_3:71365452-71365471 Msa1121300:intron 50.0%
!! TGGTCCAACTTTAGGACCGT+AGG - chr7_3:71365637-71365656 Msa1121300:intron 50.0%
!! GGTCCAACTTTAGGACCGTA+GGG - chr7_3:71365638-71365657 Msa1121300:intron 50.0%
TGGGAGCTTAGTCTCTTCAG+AGG + chr7_3:71365890-71365909 None:intergenic 50.0%
GAAGACTTTGGCTGCAAGAG+CGG - chr7_3:71366245-71366264 Msa1121300:CDS 50.0%
!! GCAAGAGCGGTTGGTAAAGA+TGG - chr7_3:71366258-71366277 Msa1121300:CDS 50.0%
AGGCCCTACGGTCCTAAAGT+TGG + chr7_3:71365644-71365663 None:intergenic 55.0%
ATACGGTAGGCAAGGCCCTA+CGG + chr7_3:71365656-71365675 None:intergenic 55.0%
ACTTTGGCTGCAAGAGCGGT+TGG - chr7_3:71366249-71366268 Msa1121300:CDS 55.0%
AGGCCCTACGGTCCTAAAGT+TGG + chr7_3:71365644-71365663 None:intergenic 55.0%
ATACGGTAGGCAAGGCCCTA+CGG + chr7_3:71365656-71365675 None:intergenic 55.0%
ACTTTGGCTGCAAGAGCGGT+TGG - chr7_3:71366249-71366268 Msa1121300:CDS 55.0%
GGCATGGTGCTCCCAGTTAG+AGG - chr7_3:71365948-71365967 Msa1121300:CDS 60.0%
GGCATGGTGCTCCCAGTTAG+AGG - chr7_3:71365948-71365967 Msa1121300:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 71364402 71366344 71364402 ID=Msa1121300;Name=Msa1121300
chr7_3 mRNA 71364402 71366344 71364402 ID=Msa1121300-mRNA-1;Parent=Msa1121300;Name=Msa1121300-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0|1|1|1|2|0|463
chr7_3 exon 71365685 71366344 71365685 ID=Msa1121300-mRNA-1:exon:18226;Parent=Msa1121300-mRNA-1
chr7_3 exon 71364402 71365133 71364402 ID=Msa1121300-mRNA-1:exon:18225;Parent=Msa1121300-mRNA-1
chr7_3 CDS 71365685 71366344 71365685 ID=Msa1121300-mRNA-1:cds;Parent=Msa1121300-mRNA-1
chr7_3 CDS 71364402 71365133 71364402 ID=Msa1121300-mRNA-1:cds;Parent=Msa1121300-mRNA-1
Gene Sequence

>Msa1121300

ATGGAGAACAAAACCATATCCACCAAGAGTGTCCATTGTTTGGTGTTGCCATTTCCAGCACATGGTCACACTAATCCAATGCTAGAATTCTCCAAGCTTTTACAACAACAACATGGAGTCAAAGTAACACTTGTCACCACCCTTTCCTACTACAAAAACATACCTAAATTGCCAAATAATTCCATTACAATTGAGACCATTTCTGATGGTTTTGACAAAGGTGGAGTTGCTGAAGCAAAGGATTTTAAATTGTATTTGAATAAATTTTGGCAACTTGGTCCACAATCTCTTGCTGATCTTATTAACAAACTTAATGCTAGATCAAACGACCATGTTGATTGTCTTATTTATGATTCATTCATGCCTTGGTGCTTAGATGTTGCAAAGGAATTTCGAATTGTTGGTGCTTCTTTTCTAACTCAAAATCTTGTTATGAATAGTATATACTATCATGTTCATTTGGGAAAGTTGAAACCTCCCTTTGTTGAGCAAGAGATTACTCTTCCTGCACTTCCTCAACTACAACCTAGGGACATGCCTTCTTTCTACTTTACATATGAAAAAGATCCAACCTTTCTTGATTTGGGAATGGCGCAGTTCTCTAATATTCACATAGCTGATTGGATCCTTGGCAATTCCTTCTTTGAGCTGGAGAAAGAGGTGGCTGATTGGACAATGAAGACTTGGTCCAACTTTAGGACCGTAGGGCCTTGCCTACCGTATACATTTTTAGATAAGCGAGTTAAAGATGATGAAGATTATGGTATTGCACAATTAAAAAGCGACGAAAGTATAGAATGGCTAAATAATAAGCCAAAACGGTCTGTTGTTTATGTTTCATTTGGGAGTATGGCATCACTCAATGAGGAACAAATAGAGGAAGTAGCACATTGTTTGAAAGATTGTGGAAGTTACTTTTTATGGGTAGTGAAAACCTCTGAAGAGACTAAGCTCCCAAAAGACTTTGAAAAGAAATCAGAGAATGGCTTAGTTGTGGCATGGTGCTCCCAGTTAGAGGTTCTAGCTCATGAAGCAATAGGGTGTTTTGTAACACATTGTGGTTGGAATTCCACATTGGAAGCTTTGAGTATAGGAGTCCCAATTGTTGCAATGCCACTTTACTCAGACCAAGGCATTGATGCAAAGTTTCTTGTAGATGTTTGGAAAGTAGGAATTAGACCTTTAGTTGATGAGAAACAAATAGTGAGAAAAGATACATTGAAGGATTGTATATGTGAAATAATGGATATGAGTGAGAAAGGCAAAGAGATTATGAATAATGTCATGCAATGGAAGACTTTGGCTGCAAGAGCGGTTGGTAAAGATGGAAGTTCTCATAAAAACATGATAGAATTTGTGAATAGCTTGTTCCAAGTTTCAACCACAAATTAA

Protein sequence

>Msa1121300

MENKTISTKSVHCLVLPFPAHGHTNPMLEFSKLLQQQHGVKVTLVTTLSYYKNIPKLPNNSITIETISDGFDKGGVAEAKDFKLYLNKFWQLGPQSLADLINKLNARSNDHVDCLIYDSFMPWCLDVAKEFRIVGASFLTQNLVMNSIYYHVHLGKLKPPFVEQEITLPALPQLQPRDMPSFYFTYEKDPTFLDLGMAQFSNIHIADWILGNSFFELEKEVADWTMKTWSNFRTVGPCLPYTFLDKRVKDDEDYGIAQLKSDESIEWLNNKPKRSVVYVSFGSMASLNEEQIEEVAHCLKDCGSYFLWVVKTSEETKLPKDFEKKSENGLVVAWCSQLEVLAHEAIGCFVTHCGWNSTLEALSIGVPIVAMPLYSDQGIDAKFLVDVWKVGIRPLVDEKQIVRKDTLKDCICEIMDMSEKGKEIMNNVMQWKTLAARAVGKDGSSHKNMIEFVNSLFQVSTTN*