AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1263030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1263030 MtrunA17_Chr4g0075721 88.318 214 11 4 4 216 1 201 1.28e-108 310
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1263030 AT5G20130.1 51.807 166 74 3 52 216 42 202 3.62e-41 139
Msa1263030 AT5G20130.2 51.807 166 74 3 52 216 71 231 2.13e-40 138

Find 87 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCACCTGAGTGATTAATTT+TGG 0.189253 8_2:-66112020 Msa1263030:three_prime_UTR
AAATAACACTATGCTCTAAA+AGG 0.194684 8_2:+66112146 None:intergenic
GTTGGTTTGGGTGGGGTAGA+TGG 0.204366 8_2:-66112615 Msa1263030:CDS
CAAGCTTGTAGAGGATAATT+TGG 0.207892 8_2:+66111963 None:intergenic
CTGGAGGAGGTTGGTTTGGG+TGG 0.219431 8_2:-66112624 Msa1263030:CDS
AAGAGAGCGTTGTAAGAAAA+TGG 0.252399 8_2:-66112215 Msa1263030:CDS
TCCATTGCTGTATGCACTTC+GGG 0.261348 8_2:-66112355 Msa1263030:CDS
TAAAAGAGTTCAGAGTTATT+AGG 0.290552 8_2:-66111912 Msa1263030:three_prime_UTR
TTTGGACGTTAACTGAATTC+AGG 0.299821 8_2:+66111981 None:intergenic
GTGCTGGAGGAGGTTGGTTT+GGG 0.308879 8_2:-66112627 Msa1263030:CDS
GGTGCTGGAGGAGGTTGGTT+TGG 0.312842 8_2:-66112628 Msa1263030:CDS
TGGAGGAGGTTGGTTTGGGT+GGG 0.343284 8_2:-66112623 Msa1263030:CDS
GGAGGAGGTTGGTTTGGGTG+GGG 0.346451 8_2:-66112622 Msa1263030:CDS
TTTGGGTGGGGTAGATGGTT+TGG 0.362531 8_2:-66112610 Msa1263030:CDS
TTTATATTACCCCTCATTGT+TGG 0.370611 8_2:-66112126 Msa1263030:three_prime_UTR
TTCAGAGTTATTAGGTTAAA+CGG 0.375387 8_2:-66111904 Msa1263030:three_prime_UTR
GCTGCTTAGTCGTCGTCAAT+TGG 0.383421 8_2:+66113594 None:intergenic
TTCAAAGAGCCATCAAAATC+AGG 0.393603 8_2:+66112267 None:intergenic
GGAGGTGACAGCGGCGGTGC+TGG 0.396880 8_2:-66112643 Msa1263030:CDS
AGAGAGCGTTGTAAGAAAAT+GGG 0.401097 8_2:-66112214 Msa1263030:CDS
ATACAGCATGGAGCATAATA+AGG 0.404987 8_2:+66112092 None:intergenic
GGATTCTTAATTCATTTGTT+CGG 0.409927 8_2:+66113709 None:intergenic
ATCCTCTACAAGCTTGCAAT+TGG 0.413331 8_2:-66111956 Msa1263030:three_prime_UTR
CGGGGAGTGAGAAATGGATT+TGG 0.413388 8_2:-66112336 Msa1263030:CDS
AATCAAAAGACGAGAAGAGC+TGG 0.418830 8_2:-66112671 Msa1263030:CDS
AACGATGGCGTGACCTGATT+AGG 0.420437 8_2:+66113618 None:intergenic
AATAACACTATGCTCTAAAA+GGG 0.435280 8_2:+66112147 None:intergenic
CAAGCTAGTCTTACTATACT+TGG 0.438781 8_2:-66112550 Msa1263030:CDS
TCCCGTATTCAATCCTAATC+AGG 0.439070 8_2:-66113631 Msa1263030:CDS
CGAGAAGAGCTGGGAGGCGG+AGG 0.440547 8_2:-66112661 Msa1263030:CDS
TTATTTGTTTGTCACAGGTT+AGG 0.453977 8_2:-66112176 Msa1263030:three_prime_UTR
CTCCATGCTGTATGTTAGTA+AGG 0.457008 8_2:-66112082 Msa1263030:three_prime_UTR
CTGCTTAGTCGTCGTCAATT+GGG 0.460767 8_2:+66113595 None:intergenic
GACAGCGGCGGTGCTGGAGG+AGG 0.464114 8_2:-66112637 Msa1263030:CDS
GCACTTCGGGGAGTGAGAAA+TGG 0.464500 8_2:-66112342 Msa1263030:CDS
CAAGCTAGAAAAGCATTAGA+AGG 0.475399 8_2:-66112739 Msa1263030:CDS
GGTGGGGTAGATGGTTTGGC+TGG 0.477513 8_2:-66112606 Msa1263030:CDS
GTAGATTATTTGTTTGTCAC+AGG 0.478487 8_2:-66112181 Msa1263030:three_prime_UTR
AGAAAATTGAATTTGACAAG+TGG 0.484614 8_2:-66112702 Msa1263030:CDS
ATCCATTGCTGTATGCACTT+CGG 0.485612 8_2:-66112356 Msa1263030:CDS
CAGTATATCCTAGTTGCAAA+AGG 0.489427 8_2:-66112405 Msa1263030:CDS
TTGAATACGGGACTCCTCCT+AGG 0.496159 8_2:+66113642 None:intergenic
GACCTGATTAGGATTGAATA+CGG 0.498106 8_2:+66113629 None:intergenic
GGTGACAGCGGCGGTGCTGG+AGG 0.514884 8_2:-66112640 Msa1263030:CDS
GAAAATTGAATTTGACAAGT+GGG 0.514902 8_2:-66112701 Msa1263030:CDS
AGACGAGAAGAGCTGGGAGG+CGG 0.517079 8_2:-66112664 Msa1263030:CDS
GCGGCGGTGCTGGAGGAGGT+TGG 0.517578 8_2:-66112633 Msa1263030:CDS
AGAGGCAGGTGAATCTGCTT+CGG 0.520608 8_2:+66113513 None:intergenic
GCATTAGAAGGTGCATTAAG+TGG 0.523555 8_2:-66112727 Msa1263030:CDS
CTACAAGCTTGCAATTGGTA+AGG 0.528899 8_2:-66111951 Msa1263030:three_prime_UTR
CAGAGGAAAACGTGGAGGAA+TGG 0.529141 8_2:-66113687 Msa1263030:exon
AATTAATCACTCAGGTGCCA+AGG 0.537967 8_2:+66112024 None:intergenic
GATGGCTCTTTGAAGAAGGA+AGG 0.548351 8_2:-66112258 Msa1263030:CDS
ATTAATCACTCAGGTGCCAA+GGG 0.555177 8_2:+66112025 None:intergenic
ACGTGGAGGAATGGAAAGCA+TGG 0.556143 8_2:-66113678 Msa1263030:exon
GTTGTTGTCTGAGAAGAGGC+AGG 0.558606 8_2:+66113499 None:intergenic
GAGAGCGTTGTAAGAAAATG+GGG 0.569827 8_2:-66112213 Msa1263030:CDS
CTGGGAGGCGGAGGTGACAG+CGG 0.571119 8_2:-66112652 Msa1263030:CDS
GGAGGCGGAGGTGACAGCGG+CGG 0.580483 8_2:-66112649 Msa1263030:CDS
CGCCTTACTAACATACAGCA+TGG 0.581053 8_2:+66112080 None:intergenic
TACCAATTGCAAGCTTGTAG+AGG 0.582402 8_2:+66111954 None:intergenic
ATCAAAAGACGAGAAGAGCT+GGG 0.583730 8_2:-66112670 Msa1263030:CDS
CATTAGAAGGTGCATTAAGT+GGG 0.584288 8_2:-66112726 Msa1263030:CDS
CCCCGAAGTGCATACAGCAA+TGG 0.590470 8_2:+66112354 None:intergenic
GATGAAAGAACCAACAATGA+GGG 0.593980 8_2:+66112116 None:intergenic
GCAGGTGAATCTGCTTCGGT+TGG 0.595607 8_2:+66113517 None:intergenic
AACTGAGTTTGTGCTGTAAG+CGG 0.600011 8_2:+66113543 None:intergenic
ACACTATGCTCTAAAAGGGA+TGG 0.600166 8_2:+66112151 None:intergenic
AAAACCAAAATTAATCACTC+AGG 0.601447 8_2:+66112016 None:intergenic
TGATGAAAGAACCAACAATG+AGG 0.607409 8_2:+66112115 None:intergenic
ATGGGAGCAATTGTAAACCT+AGG 0.620327 8_2:-66113659 Msa1263030:CDS
CGTGGAGGAATGGAAAGCAT+GGG 0.620787 8_2:-66113677 Msa1263030:exon
ACCTGATTAGGATTGAATAC+GGG 0.620878 8_2:+66113630 None:intergenic
TCGTCGTCAATTGGGAACGA+TGG 0.631589 8_2:+66113603 None:intergenic
ATACAGCAATGGATTGATGA+TGG 0.639169 8_2:+66112365 None:intergenic
CTCAGACAACAACAAAAGAG+AGG 0.641852 8_2:-66113489 Msa1263030:intron
TAAGAATCCAGAGGAAAACG+TGG 0.658759 8_2:-66113695 Msa1263030:five_prime_UTR
GGAGCAATTGTAAACCTAGG+AGG 0.664395 8_2:-66113656 Msa1263030:CDS
CCATTGCTGTATGCACTTCG+GGG 0.665878 8_2:-66112354 Msa1263030:CDS
ATGAAAGAACCAACAATGAG+GGG 0.668798 8_2:+66112117 None:intergenic
AGAGTTATTAGGTTAAACGG+TGG 0.683770 8_2:-66111901 None:intergenic
GAATCCAGAGGAAAACGTGG+AGG 0.692601 8_2:-66113692 Msa1263030:five_prime_UTR
AACTGAATTCAGGATAACCA+CGG 0.705138 8_2:+66111991 None:intergenic
TTAATCACTCAGGTGCCAAG+GGG 0.720967 8_2:+66112026 None:intergenic
ATGGATTGATGATGGCAGCG+AGG 0.723355 8_2:+66112373 None:intergenic
CAAATGAATTAAGAATCCAG+AGG 0.733055 8_2:-66113704 Msa1263030:five_prime_UTR
AAAAGACGAGAAGAGCTGGG+AGG 0.769117 8_2:-66112667 Msa1263030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATCCATATATTTATTATT+AGG + chr8_2:66112475-66112494 None:intergenic 10.0%
!!! TTTATCTTAATTTATTTTGT+TGG - chr8_2:66112574-66112593 Msa1263030:CDS 10.0%
!! AAATCCATATATTTATTATT+AGG + chr8_2:66112475-66112494 None:intergenic 10.0%
!!! TTTATCTTAATTTATTTTGT+TGG - chr8_2:66112574-66112593 Msa1263030:CDS 10.0%
!! AAGTTGTATCTTATTATATT+CGG + chr8_2:66112417-66112436 None:intergenic 15.0%
!! ATTGGAATCATAAATAAATT+AGG + chr8_2:66112452-66112471 None:intergenic 15.0%
!! CATATATTTATTATTAGGAT+TGG + chr8_2:66112470-66112489 None:intergenic 15.0%
!! CAATCCTAATAATAAATATA+TGG - chr8_2:66112468-66112487 Msa1263030:intron 15.0%
!! AATTAAATATGTTCTACATT+AGG + chr8_2:66112603-66112622 None:intergenic 15.0%
!! AAGTTGTATCTTATTATATT+CGG + chr8_2:66112417-66112436 None:intergenic 15.0%
!! ATTGGAATCATAAATAAATT+AGG + chr8_2:66112452-66112471 None:intergenic 15.0%
!! CATATATTTATTATTAGGAT+TGG + chr8_2:66112470-66112489 None:intergenic 15.0%
!! CAATCCTAATAATAAATATA+TGG - chr8_2:66112468-66112487 Msa1263030:intron 15.0%
!! AATTAAATATGTTCTACATT+AGG + chr8_2:66112603-66112622 None:intergenic 15.0%
!! TGAATGAATGAATATGAAAT+AGG + chr8_2:66112168-66112187 None:intergenic 20.0%
!! CAAAAAATAAAACTGAAGTT+GGG + chr8_2:66112222-66112241 None:intergenic 20.0%
!! ACAAAAAATAAAACTGAAGT+TGG + chr8_2:66112223-66112242 None:intergenic 20.0%
!! ATATGCTATTATAAATAGAG+AGG + chr8_2:66112390-66112409 None:intergenic 20.0%
!! CAGTGATAAATTAATTTCTA+TGG + chr8_2:66112728-66112747 None:intergenic 20.0%
!! TGAATGAATGAATATGAAAT+AGG + chr8_2:66112168-66112187 None:intergenic 20.0%
!! CAAAAAATAAAACTGAAGTT+GGG + chr8_2:66112222-66112241 None:intergenic 20.0%
!! ACAAAAAATAAAACTGAAGT+TGG + chr8_2:66112223-66112242 None:intergenic 20.0%
!! ATATGCTATTATAAATAGAG+AGG + chr8_2:66112390-66112409 None:intergenic 20.0%
!! CAGTGATAAATTAATTTCTA+TGG + chr8_2:66112728-66112747 None:intergenic 20.0%
! GGATTCTTAATTCATTTGTT+CGG + chr8_2:66111919-66111938 None:intergenic 25.0%
!! AATTTTGTAGTAGCATTTCA+TGG - chr8_2:66112277-66112296 Msa1263030:CDS 25.0%
! TAAAGAAATGAATTGCTATG+AGG + chr8_2:66112313-66112332 None:intergenic 25.0%
! TAAATATGTTCTACATTAGG+AGG + chr8_2:66112600-66112619 None:intergenic 25.0%
!! TATAGTCTCTGATCTAATTT+TGG - chr8_2:66112686-66112705 Msa1263030:CDS 25.0%
!! ATAGTCTCTGATCTAATTTT+GGG - chr8_2:66112687-66112706 Msa1263030:CDS 25.0%
! AGAAAATTGAATTTGACAAG+TGG - chr8_2:66112923-66112942 Msa1263030:intron 25.0%
! GAAAATTGAATTTGACAAGT+GGG - chr8_2:66112924-66112943 Msa1263030:intron 25.0%
!! GGTCTAATGATGATAATTTT+TGG - chr8_2:66113040-66113059 Msa1263030:intron 25.0%
! GTCTTGAAAAATACTTCTAA+CGG - chr8_2:66113328-66113347 Msa1263030:intron 25.0%
!!! AATAACACTATGCTCTAAAA+GGG + chr8_2:66113481-66113500 None:intergenic 25.0%
!! AAATAACACTATGCTCTAAA+AGG + chr8_2:66113482-66113501 None:intergenic 25.0%
! AAAACCAAAATTAATCACTC+AGG + chr8_2:66113612-66113631 None:intergenic 25.0%
!! AATAACTCTGAACTCTTTTA+CGG + chr8_2:66113713-66113732 None:intergenic 25.0%
! TAAAAGAGTTCAGAGTTATT+AGG - chr8_2:66113713-66113732 Msa1263030:five_prime_UTR 25.0%
! TTCAGAGTTATTAGGTTAAA+CGG - chr8_2:66113721-66113740 Msa1263030:five_prime_UTR 25.0%
! GGATTCTTAATTCATTTGTT+CGG + chr8_2:66111919-66111938 None:intergenic 25.0%
!! AATTTTGTAGTAGCATTTCA+TGG - chr8_2:66112277-66112296 Msa1263030:CDS 25.0%
! TAAAGAAATGAATTGCTATG+AGG + chr8_2:66112313-66112332 None:intergenic 25.0%
! TAAATATGTTCTACATTAGG+AGG + chr8_2:66112600-66112619 None:intergenic 25.0%
!! TATAGTCTCTGATCTAATTT+TGG - chr8_2:66112686-66112705 Msa1263030:CDS 25.0%
!! ATAGTCTCTGATCTAATTTT+GGG - chr8_2:66112687-66112706 Msa1263030:CDS 25.0%
! AGAAAATTGAATTTGACAAG+TGG - chr8_2:66112923-66112942 Msa1263030:intron 25.0%
! GAAAATTGAATTTGACAAGT+GGG - chr8_2:66112924-66112943 Msa1263030:intron 25.0%
!! GGTCTAATGATGATAATTTT+TGG - chr8_2:66113040-66113059 Msa1263030:intron 25.0%
! GTCTTGAAAAATACTTCTAA+CGG - chr8_2:66113328-66113347 Msa1263030:intron 25.0%
!!! AATAACACTATGCTCTAAAA+GGG + chr8_2:66113481-66113500 None:intergenic 25.0%
!! AAATAACACTATGCTCTAAA+AGG + chr8_2:66113482-66113501 None:intergenic 25.0%
! AAAACCAAAATTAATCACTC+AGG + chr8_2:66113612-66113631 None:intergenic 25.0%
!! AATAACTCTGAACTCTTTTA+CGG + chr8_2:66113713-66113732 None:intergenic 25.0%
! TAAAAGAGTTCAGAGTTATT+AGG - chr8_2:66113713-66113732 Msa1263030:five_prime_UTR 25.0%
! TTCAGAGTTATTAGGTTAAA+CGG - chr8_2:66113721-66113740 Msa1263030:five_prime_UTR 25.0%
CAAATGAATTAAGAATCCAG+AGG - chr8_2:66111921-66111940 Msa1263030:three_prime_UTR 30.0%
ATGCTACTACAAAATTATGC+AGG + chr8_2:66112273-66112292 None:intergenic 30.0%
AATCAACATAGTATGAGAGT+AGG + chr8_2:66112354-66112373 None:intergenic 30.0%
CAAACAAGTTCAGTTAAGAA+AGG + chr8_2:66112546-66112565 None:intergenic 30.0%
! CTTTCTTAACTGAACTTGTT+TGG - chr8_2:66112544-66112563 Msa1263030:CDS 30.0%
! TAGTCTCTGATCTAATTTTG+GGG - chr8_2:66112688-66112707 Msa1263030:CDS 30.0%
! CATATCTGAGACTATAAATG+CGG + chr8_2:66112783-66112802 None:intergenic 30.0%
GCATTTATAGTCTCAGATAT+GGG - chr8_2:66112782-66112801 Msa1263030:intron 30.0%
CATTTATAGTCTCAGATATG+GGG - chr8_2:66112783-66112802 Msa1263030:intron 30.0%
ATTTATAGTCTCAGATATGG+GGG - chr8_2:66112784-66112803 Msa1263030:intron 30.0%
TATAAGTGAATTCTGATTGC+AGG - chr8_2:66112861-66112880 Msa1263030:intron 30.0%
ACTGCAAATAAAGAGAGATA+AGG + chr8_2:66113204-66113223 None:intergenic 30.0%
GTAGATTATTTGTTTGTCAC+AGG - chr8_2:66113444-66113463 Msa1263030:intron 30.0%
TTATTTGTTTGTCACAGGTT+AGG - chr8_2:66113449-66113468 Msa1263030:intron 30.0%
TTTATATTACCCCTCATTGT+TGG - chr8_2:66113499-66113518 Msa1263030:CDS 30.0%
! AGGGGAGAAAAAACATTTTT+GGG + chr8_2:66113584-66113603 None:intergenic 30.0%
! AAGGGGAGAAAAAACATTTT+TGG + chr8_2:66113585-66113604 None:intergenic 30.0%
!!! AAAAATGTTTTTTCTCCCCT+TGG - chr8_2:66113584-66113603 Msa1263030:CDS 30.0%
!!! ATTAATTTTGGTTTTCTCCG+TGG - chr8_2:66113617-66113636 Msa1263030:CDS 30.0%
CAAATGAATTAAGAATCCAG+AGG - chr8_2:66111921-66111940 Msa1263030:three_prime_UTR 30.0%
ATGCTACTACAAAATTATGC+AGG + chr8_2:66112273-66112292 None:intergenic 30.0%
AATCAACATAGTATGAGAGT+AGG + chr8_2:66112354-66112373 None:intergenic 30.0%
CAAACAAGTTCAGTTAAGAA+AGG + chr8_2:66112546-66112565 None:intergenic 30.0%
! CTTTCTTAACTGAACTTGTT+TGG - chr8_2:66112544-66112563 Msa1263030:CDS 30.0%
! TAGTCTCTGATCTAATTTTG+GGG - chr8_2:66112688-66112707 Msa1263030:CDS 30.0%
! CATATCTGAGACTATAAATG+CGG + chr8_2:66112783-66112802 None:intergenic 30.0%
GCATTTATAGTCTCAGATAT+GGG - chr8_2:66112782-66112801 Msa1263030:intron 30.0%
CATTTATAGTCTCAGATATG+GGG - chr8_2:66112783-66112802 Msa1263030:intron 30.0%
ATTTATAGTCTCAGATATGG+GGG - chr8_2:66112784-66112803 Msa1263030:intron 30.0%
TATAAGTGAATTCTGATTGC+AGG - chr8_2:66112861-66112880 Msa1263030:intron 30.0%
ACTGCAAATAAAGAGAGATA+AGG + chr8_2:66113204-66113223 None:intergenic 30.0%
GTAGATTATTTGTTTGTCAC+AGG - chr8_2:66113444-66113463 Msa1263030:intron 30.0%
TTATTTGTTTGTCACAGGTT+AGG - chr8_2:66113449-66113468 Msa1263030:intron 30.0%
TTTATATTACCCCTCATTGT+TGG - chr8_2:66113499-66113518 Msa1263030:CDS 30.0%
! AGGGGAGAAAAAACATTTTT+GGG + chr8_2:66113584-66113603 None:intergenic 30.0%
! AAGGGGAGAAAAAACATTTT+TGG + chr8_2:66113585-66113604 None:intergenic 30.0%
!!! AAAAATGTTTTTTCTCCCCT+TGG - chr8_2:66113584-66113603 Msa1263030:CDS 30.0%
!!! ATTAATTTTGGTTTTCTCCG+TGG - chr8_2:66113617-66113636 Msa1263030:CDS 30.0%
ACCTGATTAGGATTGAATAC+GGG + chr8_2:66111998-66112017 None:intergenic 35.0%
GACCTGATTAGGATTGAATA+CGG + chr8_2:66111999-66112018 None:intergenic 35.0%
!!! TTTTGTTGTTGTCTGAGAAG+AGG + chr8_2:66112133-66112152 None:intergenic 35.0%
AAAATTATGCAGGCAGTGAA+AGG + chr8_2:66112263-66112282 None:intergenic 35.0%
TGCAATTTACTGTCACACTT+TGG - chr8_2:66112514-66112533 Msa1263030:intron 35.0%
CGCATTTATAGTCTCAGATA+TGG - chr8_2:66112781-66112800 Msa1263030:intron 35.0%
AATTTGAGAAGTGAGTTCTG+AGG - chr8_2:66112828-66112847 Msa1263030:intron 35.0%
! ATTTGAGAAGTGAGTTCTGA+GGG - chr8_2:66112829-66112848 Msa1263030:intron 35.0%
!! CAAGCTAGAAAAGCATTAGA+AGG - chr8_2:66112886-66112905 Msa1263030:intron 35.0%
! CATTAGAAGGTGCATTAAGT+GGG - chr8_2:66112899-66112918 Msa1263030:intron 35.0%
!! CAAGCTAGTCTTACTATACT+TGG - chr8_2:66113075-66113094 Msa1263030:intron 35.0%
CAGTATATCCTAGTTGCAAA+AGG - chr8_2:66113220-66113239 Msa1263030:intron 35.0%
! TCAAATCACCTTTTGCAACT+AGG + chr8_2:66113231-66113250 None:intergenic 35.0%
!! ATACAGCAATGGATTGATGA+TGG + chr8_2:66113263-66113282 None:intergenic 35.0%
TTCAAAGAGCCATCAAAATC+AGG + chr8_2:66113361-66113380 None:intergenic 35.0%
!! TTTTGATGGCTCTTTGAAGA+AGG - chr8_2:66113363-66113382 Msa1263030:intron 35.0%
!! AAGAGAGCGTTGTAAGAAAA+TGG - chr8_2:66113410-66113429 Msa1263030:intron 35.0%
!! AGAGAGCGTTGTAAGAAAAT+GGG - chr8_2:66113411-66113430 Msa1263030:intron 35.0%
ATGAAAGAACCAACAATGAG+GGG + chr8_2:66113511-66113530 None:intergenic 35.0%
GATGAAAGAACCAACAATGA+GGG + chr8_2:66113512-66113531 None:intergenic 35.0%
TGATGAAAGAACCAACAATG+AGG + chr8_2:66113513-66113532 None:intergenic 35.0%
ATACAGCATGGAGCATAATA+AGG + chr8_2:66113536-66113555 None:intergenic 35.0%
AACTGAATTCAGGATAACCA+CGG + chr8_2:66113637-66113656 None:intergenic 35.0%
TTTGGACGTTAACTGAATTC+AGG + chr8_2:66113647-66113666 None:intergenic 35.0%
CAAGCTTGTAGAGGATAATT+TGG + chr8_2:66113665-66113684 None:intergenic 35.0%
AGAGTTATTAGGTTAAACGG+TGG - chr8_2:66113724-66113743 Msa1263030:five_prime_UTR 35.0%
GAGTTATTAGGTTAAACGGT+GGG - chr8_2:66113725-66113744 Msa1263030:five_prime_UTR 35.0%
ACCTGATTAGGATTGAATAC+GGG + chr8_2:66111998-66112017 None:intergenic 35.0%
GACCTGATTAGGATTGAATA+CGG + chr8_2:66111999-66112018 None:intergenic 35.0%
!!! TTTTGTTGTTGTCTGAGAAG+AGG + chr8_2:66112133-66112152 None:intergenic 35.0%
AAAATTATGCAGGCAGTGAA+AGG + chr8_2:66112263-66112282 None:intergenic 35.0%
TGCAATTTACTGTCACACTT+TGG - chr8_2:66112514-66112533 Msa1263030:intron 35.0%
CGCATTTATAGTCTCAGATA+TGG - chr8_2:66112781-66112800 Msa1263030:intron 35.0%
AATTTGAGAAGTGAGTTCTG+AGG - chr8_2:66112828-66112847 Msa1263030:intron 35.0%
! ATTTGAGAAGTGAGTTCTGA+GGG - chr8_2:66112829-66112848 Msa1263030:intron 35.0%
!! CAAGCTAGAAAAGCATTAGA+AGG - chr8_2:66112886-66112905 Msa1263030:intron 35.0%
! CATTAGAAGGTGCATTAAGT+GGG - chr8_2:66112899-66112918 Msa1263030:intron 35.0%
!! CAAGCTAGTCTTACTATACT+TGG - chr8_2:66113075-66113094 Msa1263030:intron 35.0%
CAGTATATCCTAGTTGCAAA+AGG - chr8_2:66113220-66113239 Msa1263030:intron 35.0%
! TCAAATCACCTTTTGCAACT+AGG + chr8_2:66113231-66113250 None:intergenic 35.0%
!! ATACAGCAATGGATTGATGA+TGG + chr8_2:66113263-66113282 None:intergenic 35.0%
TTCAAAGAGCCATCAAAATC+AGG + chr8_2:66113361-66113380 None:intergenic 35.0%
!! TTTTGATGGCTCTTTGAAGA+AGG - chr8_2:66113363-66113382 Msa1263030:intron 35.0%
!! AAGAGAGCGTTGTAAGAAAA+TGG - chr8_2:66113410-66113429 Msa1263030:intron 35.0%
!! AGAGAGCGTTGTAAGAAAAT+GGG - chr8_2:66113411-66113430 Msa1263030:intron 35.0%
ATGAAAGAACCAACAATGAG+GGG + chr8_2:66113511-66113530 None:intergenic 35.0%
GATGAAAGAACCAACAATGA+GGG + chr8_2:66113512-66113531 None:intergenic 35.0%
TGATGAAAGAACCAACAATG+AGG + chr8_2:66113513-66113532 None:intergenic 35.0%
ATACAGCATGGAGCATAATA+AGG + chr8_2:66113536-66113555 None:intergenic 35.0%
AACTGAATTCAGGATAACCA+CGG + chr8_2:66113637-66113656 None:intergenic 35.0%
TTTGGACGTTAACTGAATTC+AGG + chr8_2:66113647-66113666 None:intergenic 35.0%
CAAGCTTGTAGAGGATAATT+TGG + chr8_2:66113665-66113684 None:intergenic 35.0%
TAAGAATCCAGAGGAAAACG+TGG - chr8_2:66111930-66111949 Msa1263030:three_prime_UTR 40.0%
ATGGGAGCAATTGTAAACCT+AGG - chr8_2:66111966-66111985 Msa1263030:three_prime_UTR 40.0%
TCCCGTATTCAATCCTAATC+AGG - chr8_2:66111994-66112013 Msa1263030:three_prime_UTR 40.0%
ACTCTTCCGCTGATGAAAAA+TGG - chr8_2:66112057-66112076 Msa1263030:three_prime_UTR 40.0%
AACTGAGTTTGTGCTGTAAG+CGG + chr8_2:66112085-66112104 None:intergenic 40.0%
CTCAGACAACAACAAAAGAG+AGG - chr8_2:66112136-66112155 Msa1263030:three_prime_UTR 40.0%
GACAACAACAAAAGAGAGGT+AGG - chr8_2:66112140-66112159 Msa1263030:three_prime_UTR 40.0%
TCAGATATGGGGGAATTAAG+TGG - chr8_2:66112794-66112813 Msa1263030:intron 40.0%
CAGATATGGGGGAATTAAGT+GGG - chr8_2:66112795-66112814 Msa1263030:intron 40.0%
! GCATTAGAAGGTGCATTAAG+TGG - chr8_2:66112898-66112917 Msa1263030:intron 40.0%
AATCAAAAGACGAGAAGAGC+TGG - chr8_2:66112954-66112973 Msa1263030:intron 40.0%
ATCAAAAGACGAGAAGAGCT+GGG - chr8_2:66112955-66112974 Msa1263030:intron 40.0%
ATCCATTGCTGTATGCACTT+CGG - chr8_2:66113269-66113288 Msa1263030:intron 40.0%
!! GAGAGCGTTGTAAGAAAATG+GGG - chr8_2:66113412-66113431 Msa1263030:intron 40.0%
!! ACACTATGCTCTAAAAGGGA+TGG + chr8_2:66113477-66113496 None:intergenic 40.0%
CTCCATGCTGTATGTTAGTA+AGG - chr8_2:66113543-66113562 Msa1263030:CDS 40.0%
ATTAATCACTCAGGTGCCAA+GGG + chr8_2:66113603-66113622 None:intergenic 40.0%
AATTAATCACTCAGGTGCCA+AGG + chr8_2:66113604-66113623 None:intergenic 40.0%
! GGCACCTGAGTGATTAATTT+TGG - chr8_2:66113605-66113624 Msa1263030:CDS 40.0%
ATCCTCTACAAGCTTGCAAT+TGG - chr8_2:66113669-66113688 Msa1263030:CDS 40.0%
TACCAATTGCAAGCTTGTAG+AGG + chr8_2:66113674-66113693 None:intergenic 40.0%
CTACAAGCTTGCAATTGGTA+AGG - chr8_2:66113674-66113693 Msa1263030:exon 40.0%
TAAGAATCCAGAGGAAAACG+TGG - chr8_2:66111930-66111949 Msa1263030:three_prime_UTR 40.0%
ATGGGAGCAATTGTAAACCT+AGG - chr8_2:66111966-66111985 Msa1263030:three_prime_UTR 40.0%
TCCCGTATTCAATCCTAATC+AGG - chr8_2:66111994-66112013 Msa1263030:three_prime_UTR 40.0%
ACTCTTCCGCTGATGAAAAA+TGG - chr8_2:66112057-66112076 Msa1263030:three_prime_UTR 40.0%
AACTGAGTTTGTGCTGTAAG+CGG + chr8_2:66112085-66112104 None:intergenic 40.0%
CTCAGACAACAACAAAAGAG+AGG - chr8_2:66112136-66112155 Msa1263030:three_prime_UTR 40.0%
GACAACAACAAAAGAGAGGT+AGG - chr8_2:66112140-66112159 Msa1263030:three_prime_UTR 40.0%
TCAGATATGGGGGAATTAAG+TGG - chr8_2:66112794-66112813 Msa1263030:intron 40.0%
CAGATATGGGGGAATTAAGT+GGG - chr8_2:66112795-66112814 Msa1263030:intron 40.0%
! GCATTAGAAGGTGCATTAAG+TGG - chr8_2:66112898-66112917 Msa1263030:intron 40.0%
AATCAAAAGACGAGAAGAGC+TGG - chr8_2:66112954-66112973 Msa1263030:intron 40.0%
ATCAAAAGACGAGAAGAGCT+GGG - chr8_2:66112955-66112974 Msa1263030:intron 40.0%
ATCCATTGCTGTATGCACTT+CGG - chr8_2:66113269-66113288 Msa1263030:intron 40.0%
!! GAGAGCGTTGTAAGAAAATG+GGG - chr8_2:66113412-66113431 Msa1263030:intron 40.0%
!! ACACTATGCTCTAAAAGGGA+TGG + chr8_2:66113477-66113496 None:intergenic 40.0%
CTCCATGCTGTATGTTAGTA+AGG - chr8_2:66113543-66113562 Msa1263030:CDS 40.0%
ATTAATCACTCAGGTGCCAA+GGG + chr8_2:66113603-66113622 None:intergenic 40.0%
AATTAATCACTCAGGTGCCA+AGG + chr8_2:66113604-66113623 None:intergenic 40.0%
! GGCACCTGAGTGATTAATTT+TGG - chr8_2:66113605-66113624 Msa1263030:CDS 40.0%
ATCCTCTACAAGCTTGCAAT+TGG - chr8_2:66113669-66113688 Msa1263030:CDS 40.0%
TACCAATTGCAAGCTTGTAG+AGG + chr8_2:66113674-66113693 None:intergenic 40.0%
CTACAAGCTTGCAATTGGTA+AGG - chr8_2:66113674-66113693 Msa1263030:exon 40.0%
GGAGCAATTGTAAACCTAGG+AGG - chr8_2:66111969-66111988 Msa1263030:three_prime_UTR 45.0%
CTGCTTAGTCGTCGTCAATT+GGG + chr8_2:66112033-66112052 None:intergenic 45.0%
TCCATTGCTGTATGCACTTC+GGG - chr8_2:66113270-66113289 Msa1263030:intron 45.0%
! GGTGATCAGCCTGATTTTGA+TGG - chr8_2:66113349-66113368 Msa1263030:intron 45.0%
! GATGGCTCTTTGAAGAAGGA+AGG - chr8_2:66113367-66113386 Msa1263030:intron 45.0%
CGCCTTACTAACATACAGCA+TGG + chr8_2:66113548-66113567 None:intergenic 45.0%
TTAATCACTCAGGTGCCAAG+GGG + chr8_2:66113602-66113621 None:intergenic 45.0%
GGAGCAATTGTAAACCTAGG+AGG - chr8_2:66111969-66111988 Msa1263030:three_prime_UTR 45.0%
CTGCTTAGTCGTCGTCAATT+GGG + chr8_2:66112033-66112052 None:intergenic 45.0%
TCCATTGCTGTATGCACTTC+GGG - chr8_2:66113270-66113289 Msa1263030:intron 45.0%
! GGTGATCAGCCTGATTTTGA+TGG - chr8_2:66113349-66113368 Msa1263030:intron 45.0%
! GATGGCTCTTTGAAGAAGGA+AGG - chr8_2:66113367-66113386 Msa1263030:intron 45.0%
CGCCTTACTAACATACAGCA+TGG + chr8_2:66113548-66113567 None:intergenic 45.0%
TTAATCACTCAGGTGCCAAG+GGG + chr8_2:66113602-66113621 None:intergenic 45.0%
GAATCCAGAGGAAAACGTGG+AGG - chr8_2:66111933-66111952 Msa1263030:three_prime_UTR 50.0%
! CATTCCTCCACGTTTTCCTC+TGG + chr8_2:66111940-66111959 None:intergenic 50.0%
CAGAGGAAAACGTGGAGGAA+TGG - chr8_2:66111938-66111957 Msa1263030:three_prime_UTR 50.0%
ACGTGGAGGAATGGAAAGCA+TGG - chr8_2:66111947-66111966 Msa1263030:three_prime_UTR 50.0%
! CGTGGAGGAATGGAAAGCAT+GGG - chr8_2:66111948-66111967 Msa1263030:three_prime_UTR 50.0%
TTGAATACGGGACTCCTCCT+AGG + chr8_2:66111986-66112005 None:intergenic 50.0%
AACGATGGCGTGACCTGATT+AGG + chr8_2:66112010-66112029 None:intergenic 50.0%
TCGTCGTCAATTGGGAACGA+TGG + chr8_2:66112025-66112044 None:intergenic 50.0%
GCTGCTTAGTCGTCGTCAAT+TGG + chr8_2:66112034-66112053 None:intergenic 50.0%
!! GCGGCTCCATTTTTCATCAG+CGG + chr8_2:66112066-66112085 None:intergenic 50.0%
AGAGGCAGGTGAATCTGCTT+CGG + chr8_2:66112115-66112134 None:intergenic 50.0%
GTTGTTGTCTGAGAAGAGGC+AGG + chr8_2:66112129-66112148 None:intergenic 50.0%
AAAAGACGAGAAGAGCTGGG+AGG - chr8_2:66112958-66112977 Msa1263030:intron 50.0%
TTTGGGTGGGGTAGATGGTT+TGG - chr8_2:66113015-66113034 Msa1263030:intron 50.0%
!! ATGGATTGATGATGGCAGCG+AGG + chr8_2:66113255-66113274 None:intergenic 50.0%
CCATTGCTGTATGCACTTCG+GGG - chr8_2:66113271-66113290 Msa1263030:intron 50.0%
! CGGGGAGTGAGAAATGGATT+TGG - chr8_2:66113289-66113308 Msa1263030:intron 50.0%
GAATCCAGAGGAAAACGTGG+AGG - chr8_2:66111933-66111952 Msa1263030:three_prime_UTR 50.0%
! CATTCCTCCACGTTTTCCTC+TGG + chr8_2:66111940-66111959 None:intergenic 50.0%
CAGAGGAAAACGTGGAGGAA+TGG - chr8_2:66111938-66111957 Msa1263030:three_prime_UTR 50.0%
ACGTGGAGGAATGGAAAGCA+TGG - chr8_2:66111947-66111966 Msa1263030:three_prime_UTR 50.0%
! CGTGGAGGAATGGAAAGCAT+GGG - chr8_2:66111948-66111967 Msa1263030:three_prime_UTR 50.0%
TTGAATACGGGACTCCTCCT+AGG + chr8_2:66111986-66112005 None:intergenic 50.0%
AACGATGGCGTGACCTGATT+AGG + chr8_2:66112010-66112029 None:intergenic 50.0%
TCGTCGTCAATTGGGAACGA+TGG + chr8_2:66112025-66112044 None:intergenic 50.0%
GCTGCTTAGTCGTCGTCAAT+TGG + chr8_2:66112034-66112053 None:intergenic 50.0%
!! GCGGCTCCATTTTTCATCAG+CGG + chr8_2:66112066-66112085 None:intergenic 50.0%
AGAGGCAGGTGAATCTGCTT+CGG + chr8_2:66112115-66112134 None:intergenic 50.0%
GTTGTTGTCTGAGAAGAGGC+AGG + chr8_2:66112129-66112148 None:intergenic 50.0%
AAAAGACGAGAAGAGCTGGG+AGG - chr8_2:66112958-66112977 Msa1263030:intron 50.0%
TTTGGGTGGGGTAGATGGTT+TGG - chr8_2:66113015-66113034 Msa1263030:intron 50.0%
!! ATGGATTGATGATGGCAGCG+AGG + chr8_2:66113255-66113274 None:intergenic 50.0%
CCATTGCTGTATGCACTTCG+GGG - chr8_2:66113271-66113290 Msa1263030:intron 50.0%
! CGGGGAGTGAGAAATGGATT+TGG - chr8_2:66113289-66113308 Msa1263030:intron 50.0%
GCAGGTGAATCTGCTTCGGT+TGG + chr8_2:66112111-66112130 None:intergenic 55.0%
!! GTGCTGGAGGAGGTTGGTTT+GGG - chr8_2:66112998-66113017 Msa1263030:intron 55.0%
!! TGGAGGAGGTTGGTTTGGGT+GGG - chr8_2:66113002-66113021 Msa1263030:intron 55.0%
!! GTTGGTTTGGGTGGGGTAGA+TGG - chr8_2:66113010-66113029 Msa1263030:intron 55.0%
CCCCGAAGTGCATACAGCAA+TGG + chr8_2:66113274-66113293 None:intergenic 55.0%
GCACTTCGGGGAGTGAGAAA+TGG - chr8_2:66113283-66113302 Msa1263030:intron 55.0%
GCAGGTGAATCTGCTTCGGT+TGG + chr8_2:66112111-66112130 None:intergenic 55.0%
!! GTGCTGGAGGAGGTTGGTTT+GGG - chr8_2:66112998-66113017 Msa1263030:intron 55.0%
!! TGGAGGAGGTTGGTTTGGGT+GGG - chr8_2:66113002-66113021 Msa1263030:intron 55.0%
!! GTTGGTTTGGGTGGGGTAGA+TGG - chr8_2:66113010-66113029 Msa1263030:intron 55.0%
CCCCGAAGTGCATACAGCAA+TGG + chr8_2:66113274-66113293 None:intergenic 55.0%
GCACTTCGGGGAGTGAGAAA+TGG - chr8_2:66113283-66113302 Msa1263030:intron 55.0%
AGACGAGAAGAGCTGGGAGG+CGG - chr8_2:66112961-66112980 Msa1263030:intron 60.0%
! GGTGCTGGAGGAGGTTGGTT+TGG - chr8_2:66112997-66113016 Msa1263030:intron 60.0%
!! CTGGAGGAGGTTGGTTTGGG+TGG - chr8_2:66113001-66113020 Msa1263030:intron 60.0%
!! GGAGGAGGTTGGTTTGGGTG+GGG - chr8_2:66113003-66113022 Msa1263030:intron 60.0%
! GGTGGGGTAGATGGTTTGGC+TGG - chr8_2:66113019-66113038 Msa1263030:intron 60.0%
AGACGAGAAGAGCTGGGAGG+CGG - chr8_2:66112961-66112980 Msa1263030:intron 60.0%
! GGTGCTGGAGGAGGTTGGTT+TGG - chr8_2:66112997-66113016 Msa1263030:intron 60.0%
!! CTGGAGGAGGTTGGTTTGGG+TGG - chr8_2:66113001-66113020 Msa1263030:intron 60.0%
!! GGAGGAGGTTGGTTTGGGTG+GGG - chr8_2:66113003-66113022 Msa1263030:intron 60.0%
! GGTGGGGTAGATGGTTTGGC+TGG - chr8_2:66113019-66113038 Msa1263030:intron 60.0%
CGAGAAGAGCTGGGAGGCGG+AGG - chr8_2:66112964-66112983 Msa1263030:intron 70.0%
CTGGGAGGCGGAGGTGACAG+CGG - chr8_2:66112973-66112992 Msa1263030:intron 70.0%
CGAGAAGAGCTGGGAGGCGG+AGG - chr8_2:66112964-66112983 Msa1263030:intron 70.0%
CTGGGAGGCGGAGGTGACAG+CGG - chr8_2:66112973-66112992 Msa1263030:intron 70.0%
GGAGGCGGAGGTGACAGCGG+CGG - chr8_2:66112976-66112995 Msa1263030:intron 75.0%
GGAGGTGACAGCGGCGGTGC+TGG - chr8_2:66112982-66113001 Msa1263030:intron 75.0%
! GGTGACAGCGGCGGTGCTGG+AGG - chr8_2:66112985-66113004 Msa1263030:intron 75.0%
! GACAGCGGCGGTGCTGGAGG+AGG - chr8_2:66112988-66113007 Msa1263030:intron 75.0%
! GCGGCGGTGCTGGAGGAGGT+TGG - chr8_2:66112992-66113011 Msa1263030:intron 75.0%
GGAGGCGGAGGTGACAGCGG+CGG - chr8_2:66112976-66112995 Msa1263030:intron 75.0%
GGAGGTGACAGCGGCGGTGC+TGG - chr8_2:66112982-66113001 Msa1263030:intron 75.0%
! GGTGACAGCGGCGGTGCTGG+AGG - chr8_2:66112985-66113004 Msa1263030:intron 75.0%
! GACAGCGGCGGTGCTGGAGG+AGG - chr8_2:66112988-66113007 Msa1263030:intron 75.0%
! GCGGCGGTGCTGGAGGAGGT+TGG - chr8_2:66112992-66113011 Msa1263030:intron 75.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 66111902 66113745 66111902 ID=Msa1263030;Name=Msa1263030
chr8_2 mRNA 66111902 66113745 66111902 ID=Msa1263030-mRNA-1;Parent=Msa1263030;Name=Msa1263030-mRNA-1;_AED=0.01;_eAED=0.01;_QI=55|1|1|1|1|1|3|301|216
chr8_2 exon 66111902 66112424 66111902 ID=Msa1263030-mRNA-1:exon:21553;Parent=Msa1263030-mRNA-1
chr8_2 exon 66112537 66112764 66112537 ID=Msa1263030-mRNA-1:exon:21552;Parent=Msa1263030-mRNA-1
chr8_2 exon 66113490 66113745 66113490 ID=Msa1263030-mRNA-1:exon:21551;Parent=Msa1263030-mRNA-1
chr8_2 five_prime_UTR 66113691 66113745 66113691 ID=Msa1263030-mRNA-1:five_prime_utr;Parent=Msa1263030-mRNA-1
chr8_2 CDS 66113490 66113690 66113490 ID=Msa1263030-mRNA-1:cds;Parent=Msa1263030-mRNA-1
chr8_2 CDS 66112537 66112764 66112537 ID=Msa1263030-mRNA-1:cds;Parent=Msa1263030-mRNA-1
chr8_2 CDS 66112203 66112424 66112203 ID=Msa1263030-mRNA-1:cds;Parent=Msa1263030-mRNA-1
chr8_2 three_prime_UTR 66111902 66112202 66111902 ID=Msa1263030-mRNA-1:three_prime_utr;Parent=Msa1263030-mRNA-1
Gene Sequence

>Msa1263030

ATGGAAAGCATGGGAGCAATTGTAAACCTAGGAGGAGTCCCGTATTCAATCCTAATCAGGTCACGCCATCGTTCCCAATTGACGACGACTAAGCAGCTTGACTCTTCCGCTGATGAAAAATGGAGCCGCTTACAGCACAAACTCAGTTTCACCAACCGAAGCAGATTCACCTGCCTCTTCTCAGACAACAACAAAAGAGAGGATCAAGCTAGAAAAGCATTAGAAGGTGCATTAAGTGGGAAGAAAATTGAATTTGACAAGTGGGACAAAGAAATCAAAAGACGAGAAGAGCTGGGAGGCGGAGGTGACAGCGGCGGTGCTGGAGGAGGTTGGTTTGGGTGGGGTAGATGGTTTGGCTGGTCTAATGATGATAATTTTTGGCAAGAAGCAAAACAAGCTAGTCTTACTATACTTGGCATCGTTCTCATATATATCCTAGTTGCAAAAGGTGATTTGATCCTCGCTGCCATCATCAATCCATTGCTGTATGCACTTCGGGGAGTGAGAAATGGATTTGGTCTCGCAACATCACAAGTCTTGAAAAATACTTCTAACGGTGATCAGCCTGATTTTGATGGCTCTTTGAAGAAGGAAGGCTACAAAAGTGCTTCTGCTAAAGAGAGCGTTGTAAGAAAATGGGGTAGTGATTAG

Protein sequence

>Msa1263030

MESMGAIVNLGGVPYSILIRSRHRSQLTTTKQLDSSADEKWSRLQHKLSFTNRSRFTCLFSDNNKREDQARKALEGALSGKKIEFDKWDKEIKRREELGGGGDSGGAGGGWFGWGRWFGWSNDDNFWQEAKQASLTILGIVLIYILVAKGDLILAAIINPLLYALRGVRNGFGLATSQVLKNTSNGDQPDFDGSLKKEGYKSASAKESVVRKWGSD*