AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0721420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0721420 MtrunA17_Chr5g0412241 92.610 433 24 2 1 426 1 432 0.0 836
Msa0721420 MtrunA17_Chr3g0132931 62.132 441 144 7 1 426 12 444 0.0 553
Msa0721420 MtrunA17_Chr3g0132961 55.134 448 166 9 1 426 13 447 6.20e-165 477
Msa0721420 MtrunA17_Chr3g0132941 41.964 112 47 5 307 408 133 236 4.38e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0721420 AT5G10490.1 63.073 436 150 3 1 426 1 435 0.0 573
Msa0721420 AT5G10490.3 62.850 428 148 3 9 426 7 433 0.0 562
Msa0721420 AT5G10490.2 69.755 367 103 2 67 426 42 407 0.0 552
Msa0721420 AT1G58200.2 62.821 390 137 2 45 426 48 437 9.18e-180 518
Msa0721420 AT1G58200.1 62.821 390 137 2 45 426 48 437 9.18e-180 518

Find 107 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTGCTGTGACCCATTTC+TGG 0.154402 5_1:-17992451 None:intergenic
TTCATTGTTTATGGAATTGC+TGG 0.209952 5_1:+17992418 Msa0721420:CDS
CCCTGAAAATCAGGCGCTTA+TGG 0.229014 5_1:+17993249 Msa0721420:CDS
TGGGTCACAGCAGGAGGTTT+TGG 0.264140 5_1:+17992458 Msa0721420:CDS
AAACAGCTTTGCCTGCAAAT+TGG 0.292527 5_1:-17992370 None:intergenic
TTGATTTGATACATTAATAA+TGG 0.300417 5_1:+17988825 Msa0721420:exon
CTGGAGCCGTACTTATTTGC+AGG 0.302317 5_1:+17990264 Msa0721420:CDS
CAGATGGGATTCCAATTTGC+AGG 0.306719 5_1:+17992359 Msa0721420:intron
CCTGCAACTGTCTCATGGGC+TGG 0.329194 5_1:+17988861 Msa0721420:CDS
TTCACTGTAAATTTGTGGTT+TGG 0.331136 5_1:-17992953 None:intergenic
AAGCTGTTTATTCTGCAGTA+TGG 0.334963 5_1:+17992384 Msa0721420:CDS
ATGATTCCGTGCTAAATTAC+AGG 0.338722 5_1:+17993305 Msa0721420:CDS
CTCATGGGCTGGGACTTTGC+AGG 0.348404 5_1:+17988872 Msa0721420:CDS
CACGGCAAGATTGAAAATTC+TGG 0.351780 5_1:+17987930 Msa0721420:five_prime_UTR
GCGCAGAATTTCGACACTTT+CGG 0.360962 5_1:+17987952 Msa0721420:five_prime_UTR
CACAACAGTCTGTACTCTAT+AGG 0.361922 5_1:-17988764 None:intergenic
TCCTGCTGTGACCCATTTCT+GGG 0.363829 5_1:-17992450 None:intergenic
AGAAGCTAGCCAGGCTGTTA+AGG 0.368941 5_1:+17990415 Msa0721420:CDS
ATCCATTCATTTACCACAAA+AGG 0.372902 5_1:-17992670 None:intergenic
CAACATAAACCCTGAAAATC+AGG 0.374249 5_1:+17993240 Msa0721420:CDS
CCAGCCCATGAGACAGTTGC+AGG 0.377482 5_1:-17988861 None:intergenic
GGTTCCCTGCAACTGTCTCA+TGG 0.378252 5_1:+17988856 Msa0721420:CDS
ATTTACATCTAAATGACTAA+TGG 0.383147 5_1:-17993029 None:intergenic
GCTTCTGTAGGTAGAATTAC+TGG 0.386567 5_1:-17990398 None:intergenic
ACAACAGTCTGTACTCTATA+GGG 0.399252 5_1:-17988763 None:intergenic
CATGGTTTGCAGAGGGGAAA+GGG 0.403892 5_1:+17988998 Msa0721420:intron
CAACATTCACTGTAAATTTG+TGG 0.406561 5_1:-17992958 None:intergenic
TCCACTGCAGTTCATGAAAC+AGG 0.407725 5_1:+17989710 Msa0721420:intron
ACATTAATAATGGCTCTTCC+TGG 0.408042 5_1:+17988835 Msa0721420:exon
CTGCAACTGTCTCATGGGCT+GGG 0.410328 5_1:+17988862 Msa0721420:CDS
ATTCAATGCATATCCAGTTT+CGG 0.413959 5_1:+17989039 Msa0721420:CDS
CTGCTATGCAGCATGTTGGC+TGG 0.422368 5_1:+17992882 Msa0721420:intron
TTCCTTGTCTGAAACATCAA+TGG 0.423767 5_1:-17990059 None:intergenic
CGCTTATGGTATGTATGAAC+TGG 0.425197 5_1:+17993263 Msa0721420:CDS
AATTGCGCTTCCTTCTGTTA+AGG 0.434176 5_1:+17989839 Msa0721420:CDS
TCAAAATTTGCAATACTACT+TGG 0.434428 5_1:+17988798 Msa0721420:five_prime_UTR
GAATTTCGACACTTTCGGTT+GGG 0.434680 5_1:+17987957 Msa0721420:five_prime_UTR
GGAATCAACTTTACAATGAC+TGG 0.435897 5_1:-17989996 None:intergenic
AACACCTCCATCATATAAAC+AGG 0.444100 5_1:+17989748 Msa0721420:CDS
CCCGGTCTTTATTGCTGTTG+AGG 0.450363 5_1:-17988897 None:intergenic
TCTTCACCTCGTATAATTGT+TGG 0.451139 5_1:-17992911 None:intergenic
GTTCCCTGCAACTGTCTCAT+GGG 0.456123 5_1:+17988857 Msa0721420:CDS
CATGAATCATTGCGCTTGAA+AGG 0.462593 5_1:-17992639 None:intergenic
TGCAGAAGAGTGATAATAGT+TGG 0.463555 5_1:+17990183 Msa0721420:intron
GGCATACCTTGATAAACAAT+AGG 0.464220 5_1:-17990486 None:intergenic
AGAATTTCGACACTTTCGGT+TGG 0.465603 5_1:+17987956 Msa0721420:five_prime_UTR
TCTACCTACAGAAGCTAGCC+AGG 0.470503 5_1:+17990406 Msa0721420:CDS
CAATCTTGCCGTGTCAGCCA+TGG 0.475221 5_1:-17987920 None:intergenic
TTGAGCAGCAGAGGTTGCAC+AGG 0.475903 5_1:+17993203 Msa0721420:CDS
TATTAATGTATCAAATCAAA+TGG 0.475953 5_1:-17988821 None:intergenic
TCATGGTTTGCAGAGGGGAA+AGG 0.479104 5_1:+17988997 Msa0721420:intron
GGAAGCGCAATTCGTTCGCC+TGG 0.491141 5_1:-17989828 None:intergenic
ATTTAATTGATTATTGATTG+TGG 0.493482 5_1:-17987981 None:intergenic
AGTTCATGAAACAGGACTAC+AGG 0.497346 5_1:+17989718 Msa0721420:intron
TCATTGTTTATGGAATTGCT+GGG 0.497570 5_1:+17992419 Msa0721420:CDS
TCCTTGTCTGAAACATCAAT+GGG 0.500430 5_1:-17990058 None:intergenic
ATTGAAGGATATGAGGTGTC+TGG 0.508645 5_1:+17992703 Msa0721420:CDS
AACGAAGATTGAAGGATATG+AGG 0.513606 5_1:+17992696 Msa0721420:CDS
TGGATTCAAACGAAGATTGA+AGG 0.514774 5_1:+17992688 Msa0721420:CDS
TGAGACAGTTGCAGGGAACC+AGG 0.519352 5_1:-17988853 None:intergenic
ACCCAGAAATGGGTCACAGC+AGG 0.524431 5_1:+17992449 Msa0721420:CDS
ACCTCAACAGCAATAAAGAC+CGG 0.528072 5_1:+17988896 Msa0721420:CDS
GCGTTGACCTGTTTATATGA+TGG 0.539034 5_1:-17989755 None:intergenic
AAAGTCGTTCCTTAACAGCC+TGG 0.540283 5_1:-17990424 None:intergenic
TGCTGACATGCGGAAAGTAT+TGG 0.540499 5_1:+17993165 Msa0721420:CDS
TGCGCTTCCTTCTGTTAAGG+TGG 0.542081 5_1:+17989842 Msa0721420:CDS
TAAATGACTAATGGCTAGGT+GGG 0.548938 5_1:-17993020 None:intergenic
ACCTTCGACCACTACTGTTG+TGG 0.550457 5_1:+17990240 Msa0721420:CDS
TAAATCATTGTCGACTGTAG+TGG 0.552113 5_1:+17990457 Msa0721420:CDS
AATCAAATCCATGGCTGACA+CGG 0.554843 5_1:+17987912 Msa0721420:five_prime_UTR
AACCTCTGCTGCTCAACTTG+AGG 0.556309 5_1:-17993196 None:intergenic
GCCCATTGATGTTTCAGACA+AGG 0.557479 5_1:+17990057 Msa0721420:CDS
ATCCTCAAGTTGAGCAGCAG+AGG 0.557486 5_1:+17993194 Msa0721420:CDS
CATCTAAATGACTAATGGCT+AGG 0.558832 5_1:-17993024 None:intergenic
GTGAAACCTGCAAATAAGTA+CGG 0.563725 5_1:-17990270 None:intergenic
TGATTCCGTGCTAAATTACA+GGG 0.564374 5_1:+17993306 Msa0721420:CDS
AAGACCCCTGTAATTTAGCA+CGG 0.564447 5_1:-17993311 None:intergenic
CGACCACTACTGTTGTGGAC+TGG 0.567856 5_1:+17990245 Msa0721420:CDS
GTAAAGTTGATTCCCGCCGT+TGG 0.568974 5_1:+17990005 Msa0721420:CDS
ATGGTTTGCAGAGGGGAAAG+GGG 0.571464 5_1:+17988999 Msa0721420:intron
GTTCATGAAACAGGACTACA+GGG 0.577067 5_1:+17989719 Msa0721420:intron
CTAAATGACTAATGGCTAGG+TGG 0.579708 5_1:-17993021 None:intergenic
TTTCCTGCTATGCAGCATGT+TGG 0.592657 5_1:+17992878 Msa0721420:intron
CTATGCAGCATGTTGGCTGG+TGG 0.593054 5_1:+17992885 Msa0721420:intron
GTTGACTCTTGCTGGTCGTG+AGG 0.596075 5_1:+17992490 Msa0721420:CDS
ACACGTGGAAATCAAATCCA+TGG 0.602278 5_1:+17987903 Msa0721420:five_prime_UTR
CAGAAATGGGTCACAGCAGG+AGG 0.610702 5_1:+17992452 Msa0721420:CDS
GTAGTAGCCACCTTAACAGA+AGG 0.612590 5_1:-17989849 None:intergenic
ACAGCCTGGCTAGCTTCTGT+AGG 0.614293 5_1:-17990410 None:intergenic
AAAATGATAATGCCAACGGC+GGG 0.615340 5_1:-17990017 None:intergenic
TTTGTGACCTAACTCAACAA+TGG 0.618240 5_1:-17988099 None:intergenic
CCTCAACAGCAATAAAGACC+GGG 0.619667 5_1:+17988897 Msa0721420:CDS
AATTTACAGTGAATGTTGTG+CGG 0.627582 5_1:+17992963 Msa0721420:CDS
GCTCCAGTCCACAACAGTAG+TGG 0.636987 5_1:-17990248 None:intergenic
ACTTTGTCAATCTTTCAACT+CGG 0.637694 5_1:-17988722 None:intergenic
TTGACCTGTTTATATGATGG+AGG 0.637854 5_1:-17989752 None:intergenic
TCCACAACAGTAGTGGTCGA+AGG 0.642801 5_1:-17990241 None:intergenic
TGAAGTTACTATGTAATGAG+TGG 0.643990 5_1:-17990216 None:intergenic
CAGCCCATGAGACAGTTGCA+GGG 0.673799 5_1:-17988860 None:intergenic
TGAGGTGTCTGGCACTGTTG+AGG 0.674638 5_1:+17992714 Msa0721420:CDS
TTTGTCTATCTGCTTCTACG+AGG 0.681568 5_1:-17988073 None:intergenic
AGAACATTGTTGCTGACATG+CGG 0.687401 5_1:+17993155 Msa0721420:intron
TGGCTACTACAGTACTGACA+AGG 0.701942 5_1:+17989862 Msa0721420:CDS
GAACGTTTGAAGTAGACACG+TGG 0.721212 5_1:+17987888 None:intergenic
TGGTCACCAACAATTATACG+AGG 0.753319 5_1:+17992905 Msa0721420:CDS
GATTCCGTGCTAAATTACAG+GGG 0.755065 5_1:+17993307 Msa0721420:CDS
TTCATGAAACAGGACTACAG+GGG 0.786260 5_1:+17989720 Msa0721420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATAAAATTATTGAAAAAT+TGG - chr5_1:17988180-17988199 None:intergenic 10.0%
!!! TTTTAAAAATAATAGACAAT+CGG - chr5_1:17990629-17990648 None:intergenic 10.0%
!! AACAATATCAATTAATATAT+GGG - chr5_1:17991665-17991684 None:intergenic 10.0%
!! AAACAATATCAATTAATATA+TGG - chr5_1:17991666-17991685 None:intergenic 10.0%
!! ATAATGTAATAAAAAAGTAA+TGG - chr5_1:17991924-17991943 None:intergenic 10.0%
!! AAAATATCATAAAACAATAT+TGG - chr5_1:17993105-17993124 None:intergenic 10.0%
!!! ATTTAATTGATTATTGATTG+TGG - chr5_1:17987984-17988003 None:intergenic 15.0%
!! TATTAATGTATCAAATCAAA+TGG - chr5_1:17988824-17988843 None:intergenic 15.0%
!!! TTGATTTGATACATTAATAA+TGG + chr5_1:17988825-17988844 Msa0721420:exon 15.0%
!! TTCTTAAAAACATTAAGATA+TGG + chr5_1:17989066-17989085 Msa0721420:intron 15.0%
!! ATTCAAATTTCAAAGAAAAA+GGG - chr5_1:17989170-17989189 None:intergenic 15.0%
!! AATTCAAATTTCAAAGAAAA+AGG - chr5_1:17989171-17989190 None:intergenic 15.0%
!! ACTGATGTTATATATATAAA+AGG + chr5_1:17990931-17990950 Msa0721420:intron 15.0%
!! CTGATGTTATATATATAAAA+GGG + chr5_1:17990932-17990951 Msa0721420:intron 15.0%
!! TGATGTTATATATATAAAAG+GGG + chr5_1:17990933-17990952 Msa0721420:intron 15.0%
!!! TTTTTACTTAAAATCAATAC+CGG - chr5_1:17991742-17991761 None:intergenic 15.0%
!! TATATTTCTTAACTACCAAA+TGG - chr5_1:17988312-17988331 None:intergenic 20.0%
!!! ATTTGGTAGTTAAGAAATAT+AGG + chr5_1:17988311-17988330 Msa0721420:intron 20.0%
!!! TTTGGTAGTTAAGAAATATA+GGG + chr5_1:17988312-17988331 Msa0721420:intron 20.0%
!! TTGTAGATAGTAAAAAATAG+CGG + chr5_1:17988421-17988440 Msa0721420:intron 20.0%
!! TTTAACAATACTAGACTATT+CGG + chr5_1:17988551-17988570 Msa0721420:intron 20.0%
!!! TACTGTTCAATTTTGATTAT+TGG + chr5_1:17989281-17989300 Msa0721420:intron 20.0%
!! CAATTTCTTTAATCTAGAAA+AGG - chr5_1:17989646-17989665 None:intergenic 20.0%
!! AGATTAGAAGAAATCTTAAT+GGG - chr5_1:17991102-17991121 None:intergenic 20.0%
!! TCCTAAATTATGTTGAAAAA+TGG + chr5_1:17991204-17991223 Msa0721420:intron 20.0%
!!! TCCATTTTTCAACATAATTT+AGG - chr5_1:17991208-17991227 None:intergenic 20.0%
!!! ACGCTTTTAAAAAATATTGA+AGG + chr5_1:17991480-17991499 Msa0721420:intron 20.0%
!!! CGCTTTTAAAAAATATTGAA+GGG + chr5_1:17991481-17991500 Msa0721420:intron 20.0%
!! ATTAGATCAAATTAATGGTT+AGG - chr5_1:17991586-17991605 None:intergenic 20.0%
!!! TAACCATTAATTTGATCTAA+TGG + chr5_1:17991585-17991604 Msa0721420:intron 20.0%
!! ATTAATTGATATTGTTTAGC+TGG + chr5_1:17991669-17991688 Msa0721420:intron 20.0%
!!! TTTTACTTAAAATCAATACC+GGG - chr5_1:17991741-17991760 None:intergenic 20.0%
!! TTAACTAAGAGTCTTAATTA+GGG + chr5_1:17991962-17991981 Msa0721420:intron 20.0%
!!! TGAGCAAAAATAATTCATTT+TGG + chr5_1:17992163-17992182 Msa0721420:intron 20.0%
!!! TCCTTTTAATTATTGAATGT+TGG + chr5_1:17992750-17992769 Msa0721420:intron 20.0%
!! TCCAACATTCAATAATTAAA+AGG - chr5_1:17992754-17992773 None:intergenic 20.0%
!! ATTTACATCTAAATGACTAA+TGG - chr5_1:17993032-17993051 None:intergenic 20.0%
! AGTCTAGTATTGTTAAATAG+CGG - chr5_1:17988548-17988567 None:intergenic 25.0%
! TCAAAATTTGCAATACTACT+TGG + chr5_1:17988798-17988817 Msa0721420:five_prime_UTR 25.0%
!!! CTTTTTTTTTTACCACTTCA+TGG + chr5_1:17988980-17988999 Msa0721420:intron 25.0%
! AATTTGAATTACAGATTTCG+TGG + chr5_1:17989181-17989200 Msa0721420:intron 25.0%
!!! TTTCGTGGTACTTTTTTTAT+AGG + chr5_1:17989196-17989215 Msa0721420:intron 25.0%
!! TGAAATTTTATGCTAGTGAT+GGG - chr5_1:17989456-17989475 None:intergenic 25.0%
!! ATGAAATTTTATGCTAGTGA+TGG - chr5_1:17989457-17989476 None:intergenic 25.0%
! TTGTAAACCTGATTTAATGA+TGG + chr5_1:17989570-17989589 Msa0721420:intron 25.0%
!! TAAGTGCTCTATCTTTTAAT+TGG + chr5_1:17989923-17989942 Msa0721420:intron 25.0%
!!! CATTATCATTTTTGCAGTAT+GGG + chr5_1:17990028-17990047 Msa0721420:CDS 25.0%
!!! ATTATCATTTTTGCAGTATG+GGG + chr5_1:17990029-17990048 Msa0721420:CDS 25.0%
!!! TTTTCAGGTTATTTAGCAAT+CGG + chr5_1:17990088-17990107 Msa0721420:intron 25.0%
! GTTCAAATTGATGAATTGTT+TGG + chr5_1:17990533-17990552 Msa0721420:intron 25.0%
! CCTAGTTAATTAAGCTATTT+CGG + chr5_1:17990571-17990590 Msa0721420:intron 25.0%
!! CTAGTTAATTAAGCTATTTC+GGG + chr5_1:17990572-17990591 Msa0721420:intron 25.0%
! AAATAATAGACAATCGGATA+AGG - chr5_1:17990623-17990642 None:intergenic 25.0%
! GCAGTTAGACAAAAAAAAAT+AGG - chr5_1:17990661-17990680 None:intergenic 25.0%
!! TACTGAAGATGGTAAATTTT+GGG - chr5_1:17991069-17991088 None:intergenic 25.0%
!! TTACTGAAGATGGTAAATTT+TGG - chr5_1:17991070-17991089 None:intergenic 25.0%
! GAGATTAGAAGAAATCTTAA+TGG - chr5_1:17991103-17991122 None:intergenic 25.0%
! TAATTAAGTCAAATGGAGAA+AGG - chr5_1:17991131-17991150 None:intergenic 25.0%
! ACAGTCATAATTAAGTCAAA+TGG - chr5_1:17991138-17991157 None:intergenic 25.0%
!!! ACTTGATTGCTACTTTTTTT+TGG - chr5_1:17991431-17991450 None:intergenic 25.0%
! AAGCCATTAGATCAAATTAA+TGG - chr5_1:17991591-17991610 None:intergenic 25.0%
! TAAAAGTTGTGCAATATAGT+TGG + chr5_1:17991695-17991714 Msa0721420:intron 25.0%
! CATTATATGCATGTAATTTC+AGG - chr5_1:17991833-17991852 None:intergenic 25.0%
!!! TTCAATGTCCTTTTTTTCTA+TGG + chr5_1:17991865-17991884 Msa0721420:intron 25.0%
!! AACTTGTTCCATAGAAAAAA+AGG - chr5_1:17991876-17991895 None:intergenic 25.0%
! GTTAACTAAGAGTCTTAATT+AGG + chr5_1:17991961-17991980 Msa0721420:intron 25.0%
!!! AAGTAATGGTGTTTTTGTTT+AGG + chr5_1:17992023-17992042 Msa0721420:intron 25.0%
! CAATCAAGTCATATTAATCT+TGG - chr5_1:17992061-17992080 None:intergenic 25.0%
!!! TTATTTTTGCTCATATACCT+GGG - chr5_1:17992156-17992175 None:intergenic 25.0%
!!! ATTATTTTTGCTCATATACC+TGG - chr5_1:17992157-17992176 None:intergenic 25.0%
! AGATAACAATTGTAGAAACA+TGG + chr5_1:17992251-17992270 Msa0721420:intron 25.0%
!!! AATTATCTGTTTTTGTCAGA+TGG + chr5_1:17992343-17992362 Msa0721420:intron 25.0%
!!! ATTATCTGTTTTTGTCAGAT+GGG + chr5_1:17992344-17992363 Msa0721420:intron 25.0%
! TTGTAAAGTACAACAGAATT+GGG - chr5_1:17992544-17992563 None:intergenic 25.0%
! ATTGTAAAGTACAACAGAAT+TGG - chr5_1:17992545-17992564 None:intergenic 25.0%
!! ATATTTTTCCCAATGACAAA+TGG + chr5_1:17993118-17993137 Msa0721420:intron 25.0%
CAAAAATCCATTGTTGAGTT+AGG + chr5_1:17988092-17988111 Msa0721420:five_prime_UTR 30.0%
ATAACGAATGTGACATGAAT+TGG - chr5_1:17988210-17988229 None:intergenic 30.0%
! GTTGATGAAATTGTTCCATT+TGG + chr5_1:17988294-17988313 Msa0721420:intron 30.0%
TTGTTGAATAACTGTTGTAG+TGG - chr5_1:17988467-17988486 None:intergenic 30.0%
ACTTTGTCAATCTTTCAACT+CGG - chr5_1:17988725-17988744 None:intergenic 30.0%
ATTCAATGCATATCCAGTTT+CGG + chr5_1:17989039-17989058 Msa0721420:CDS 30.0%
!! TTTTAAGAACATACCGAAAC+TGG - chr5_1:17989055-17989074 None:intergenic 30.0%
ATGTGCAGCTGATATAATAT+TGG + chr5_1:17989369-17989388 Msa0721420:intron 30.0%
TGTGCAGCTGATATAATATT+GGG + chr5_1:17989370-17989389 Msa0721420:intron 30.0%
CCTGACAATATTATAGATAC+TGG - chr5_1:17989529-17989548 None:intergenic 30.0%
CCAGTATCTATAATATTGTC+AGG + chr5_1:17989526-17989545 Msa0721420:intron 30.0%
CATTCAACCATCATTAAATC+AGG - chr5_1:17989580-17989599 None:intergenic 30.0%
! TGCAAAAATGATAATGCCAA+CGG - chr5_1:17990024-17990043 None:intergenic 30.0%
!! GCATTATCATTTTTGCAGTA+TGG + chr5_1:17990027-17990046 Msa0721420:CDS 30.0%
TGAAGTTACTATGTAATGAG+TGG - chr5_1:17990219-17990238 None:intergenic 30.0%
! CTTTTGCCTATTGTTTATCA+AGG + chr5_1:17990480-17990499 Msa0721420:CDS 30.0%
!! TATTCTGAAGTTAAGGAAAC+AGG - chr5_1:17990510-17990529 None:intergenic 30.0%
!! GAACAGATATTCTGAAGTTA+AGG - chr5_1:17990517-17990536 None:intergenic 30.0%
CCGAAATAGCTTAATTAACT+AGG - chr5_1:17990574-17990593 None:intergenic 30.0%
GCTACAATAATGATGTATCT+TGG - chr5_1:17990726-17990745 None:intergenic 30.0%
AAATTGGATCCAAAGATTTG+GGG - chr5_1:17990764-17990783 None:intergenic 30.0%
CAAATTGGATCCAAAGATTT+GGG - chr5_1:17990765-17990784 None:intergenic 30.0%
TTATGGAAGCAAAACAGAAT+AGG - chr5_1:17990793-17990812 None:intergenic 30.0%
! AGCACACAACAATTAGTTTA+TGG - chr5_1:17990810-17990829 None:intergenic 30.0%
! GGTACCTTTTCTATATGTTA+AGG + chr5_1:17990906-17990925 Msa0721420:intron 30.0%
GTTGCCTTAACATATAGAAA+AGG - chr5_1:17990913-17990932 None:intergenic 30.0%
AAGAGTAGTTAAAATGAGAG+AGG + chr5_1:17990969-17990988 Msa0721420:intron 30.0%
! TAATGGACACAAGGAAAAAA+GGG - chr5_1:17991242-17991261 None:intergenic 30.0%
! TTAATGGACACAAGGAAAAA+AGG - chr5_1:17991243-17991262 None:intergenic 30.0%
CGGATTATATGTACGATTAA+TGG - chr5_1:17991259-17991278 None:intergenic 30.0%
!! TTCAATCACACATTTGTTGT+CGG + chr5_1:17991309-17991328 Msa0721420:intron 30.0%
AATGCGAGGAAAAAAATCAT+AGG + chr5_1:17991509-17991528 Msa0721420:intron 30.0%
TAGTTAAAATGAGAGATGAG+AGG - chr5_1:17991623-17991642 None:intergenic 30.0%
!!! TTTTGGCTTATAATTGAGAC+CGG + chr5_1:17991997-17992016 Msa0721420:intron 30.0%
AAAAACACCATTACTTCATC+CGG - chr5_1:17992019-17992038 None:intergenic 30.0%
AATTGCTTGTTTATTAGCTG+TGG + chr5_1:17992283-17992302 Msa0721420:intron 30.0%
!!! TGCTGCTTTTTCATTGTTTA+TGG + chr5_1:17992409-17992428 Msa0721420:CDS 30.0%
TTCATTGTTTATGGAATTGC+TGG + chr5_1:17992418-17992437 Msa0721420:CDS 30.0%
TCATTGTTTATGGAATTGCT+GGG + chr5_1:17992419-17992438 Msa0721420:CDS 30.0%
AATAAGTTCCACAATATCAC+AGG - chr5_1:17992582-17992601 None:intergenic 30.0%
ATCCATTCATTTACCACAAA+AGG - chr5_1:17992673-17992692 None:intergenic 30.0%
TTCACTGTAAATTTGTGGTT+TGG - chr5_1:17992956-17992975 None:intergenic 30.0%
CAACATTCACTGTAAATTTG+TGG - chr5_1:17992961-17992980 None:intergenic 30.0%
AATTTACAGTGAATGTTGTG+CGG + chr5_1:17992963-17992982 Msa0721420:CDS 30.0%
GCATTAAACCATTTGTCATT+GGG - chr5_1:17993129-17993148 None:intergenic 30.0%
AGCATTAAACCATTTGTCAT+TGG - chr5_1:17993130-17993149 None:intergenic 30.0%
TTTGTGACCTAACTCAACAA+TGG - chr5_1:17988102-17988121 None:intergenic 35.0%
! TTTTTCTTTGTCTTCATCGC+AGG + chr5_1:17988128-17988147 Msa0721420:five_prime_UTR 35.0%
! AACTAGCTCTTGAATCTTGA+TGG - chr5_1:17988599-17988618 None:intergenic 35.0%
! AGAGCTAGTTTCAGATATTC+CGG + chr5_1:17988609-17988628 Msa0721420:intron 35.0%
TTTCAGATATTCCGGAGTTA+AGG + chr5_1:17988617-17988636 Msa0721420:intron 35.0%
! ATGAAGCATCACAAAGGTTA+AGG - chr5_1:17988669-17988688 None:intergenic 35.0%
! AATCACATGAAGCATCACAA+AGG - chr5_1:17988675-17988694 None:intergenic 35.0%
! ATTAATATCAGTGTTGCTGC+AGG + chr5_1:17988696-17988715 Msa0721420:intron 35.0%
ACAACAGTCTGTACTCTATA+GGG - chr5_1:17988766-17988785 None:intergenic 35.0%
ACATTAATAATGGCTCTTCC+TGG + chr5_1:17988835-17988854 Msa0721420:exon 35.0%
!! CTGAATGTATTTCTAGTACC+CGG - chr5_1:17988918-17988937 None:intergenic 35.0%
TACGTTCTTTGTTCAGGTAT+CGG + chr5_1:17988941-17988960 Msa0721420:intron 35.0%
!! CTGTTGATTCAACGTGTAAT+TGG + chr5_1:17989101-17989120 Msa0721420:intron 35.0%
! AGTTTTCAGTGTTCAAAGTC+TGG + chr5_1:17989249-17989268 Msa0721420:intron 35.0%
TGTTCAAAGTCTGGATTACT+TGG + chr5_1:17989258-17989277 Msa0721420:intron 35.0%
GCTGATATAATATTGGGTCT+TGG + chr5_1:17989376-17989395 Msa0721420:intron 35.0%
!! TTATGCTAGTGATGGGTTAA+TGG - chr5_1:17989449-17989468 None:intergenic 35.0%
AACACCTCCATCATATAAAC+AGG + chr5_1:17989748-17989767 Msa0721420:CDS 35.0%
TTGACCTGTTTATATGATGG+AGG - chr5_1:17989755-17989774 None:intergenic 35.0%
!!! TGTCATTGTTTTTTAGTGCC+AGG + chr5_1:17989810-17989829 Msa0721420:CDS 35.0%
ACTTAAATTTGTGCGCTTGA+TGG - chr5_1:17989908-17989927 None:intergenic 35.0%
GGAATCAACTTTACAATGAC+TGG - chr5_1:17989999-17990018 None:intergenic 35.0%
! AAAAATGATAATGCCAACGG+CGG - chr5_1:17990021-17990040 None:intergenic 35.0%
! TCCTTGTCTGAAACATCAAT+GGG - chr5_1:17990061-17990080 None:intergenic 35.0%
! TTCCTTGTCTGAAACATCAA+TGG - chr5_1:17990062-17990081 None:intergenic 35.0%
!!! GACAAGGAAACTGTTTTTTC+AGG + chr5_1:17990073-17990092 Msa0721420:CDS 35.0%
TGCAGAAGAGTGATAATAGT+TGG + chr5_1:17990183-17990202 Msa0721420:intron 35.0%
GTGAAACCTGCAAATAAGTA+CGG - chr5_1:17990273-17990292 None:intergenic 35.0%
! TAAATCATTGTCGACTGTAG+TGG + chr5_1:17990457-17990476 Msa0721420:CDS 35.0%
GGCATACCTTGATAAACAAT+AGG - chr5_1:17990489-17990508 None:intergenic 35.0%
TCATTATTGTAGCATGCTTG+AGG + chr5_1:17990733-17990752 Msa0721420:intron 35.0%
GCAAATTGGATCCAAAGATT+TGG - chr5_1:17990766-17990785 None:intergenic 35.0%
AACTACTCTTCTCACTTGAT+AGG - chr5_1:17990959-17990978 None:intergenic 35.0%
TAGTTAAAATGAGAGAGGAG+AGG + chr5_1:17990974-17990993 Msa0721420:intron 35.0%
AGTTAAAATGAGAGAGGAGA+GGG + chr5_1:17990975-17990994 Msa0721420:intron 35.0%
! TGAAGATGGTAAATTTTGGG+CGG - chr5_1:17991066-17991085 None:intergenic 35.0%
TTTACCATCTTCAGTAAGCA+AGG + chr5_1:17991073-17991092 Msa0721420:intron 35.0%
TTACCATCTTCAGTAAGCAA+GGG + chr5_1:17991074-17991093 Msa0721420:intron 35.0%
! ATGTACGATTAATGGACACA+AGG - chr5_1:17991251-17991270 None:intergenic 35.0%
TGTTCGTTAGTTGCAACAAA+GGG - chr5_1:17991337-17991356 None:intergenic 35.0%
! AAGTTGTGACCTTTTCATCA+GGG - chr5_1:17991367-17991386 None:intergenic 35.0%
! AAAGTTGTGACCTTTTCATC+AGG - chr5_1:17991368-17991387 None:intergenic 35.0%
TGATGAAAAGGTCACAACTT+TGG + chr5_1:17991367-17991386 Msa0721420:intron 35.0%
GATGAAAAGGTCACAACTTT+GGG + chr5_1:17991368-17991387 Msa0721420:intron 35.0%
ATGAAAAGGTCACAACTTTG+GGG + chr5_1:17991369-17991388 Msa0721420:intron 35.0%
GCAATCAAGTCATATGATCT+TGG + chr5_1:17991441-17991460 Msa0721420:intron 35.0%
TCAAGTCATATGATCTTGGT+TGG + chr5_1:17991445-17991464 Msa0721420:intron 35.0%
CAAGTCATATGATCTTGGTT+GGG + chr5_1:17991446-17991465 Msa0721420:intron 35.0%
AGGAATGATGTCATTGAACA+TGG - chr5_1:17991813-17991832 None:intergenic 35.0%
TTCTATGGAACAAGTTCTCA+TGG + chr5_1:17991880-17991899 Msa0721420:intron 35.0%
GTCTTAATTAGGGTGACTTT+AGG + chr5_1:17991972-17991991 Msa0721420:intron 35.0%
! TAGGGTGACTTTAGGTATTT+TGG + chr5_1:17991980-17991999 Msa0721420:intron 35.0%
TATAATATATGACAGCTCCC+AGG + chr5_1:17992136-17992155 Msa0721420:intron 35.0%
GATGCATTATAGAAGACTAG+TGG + chr5_1:17992206-17992225 Msa0721420:intron 35.0%
TGGTTCAATTTCATACGTCT+TGG + chr5_1:17992303-17992322 Msa0721420:intron 35.0%
AAGCTGTTTATTCTGCAGTA+TGG + chr5_1:17992384-17992403 Msa0721420:CDS 35.0%
! GACCTTTTGTGGTAAATGAA+TGG + chr5_1:17992668-17992687 Msa0721420:CDS 35.0%
TGGATTCAAACGAAGATTGA+AGG + chr5_1:17992688-17992707 Msa0721420:CDS 35.0%
AACGAAGATTGAAGGATATG+AGG + chr5_1:17992696-17992715 Msa0721420:CDS 35.0%
!!! GATTTTGAGTTCTCTCAGTA+AGG + chr5_1:17992849-17992868 Msa0721420:intron 35.0%
TCTTCACCTCGTATAATTGT+TGG - chr5_1:17992914-17992933 None:intergenic 35.0%
ACCTCACTCAAAAAACACAT+TGG + chr5_1:17992987-17993006 Msa0721420:CDS 35.0%
!!! TCCAATGTGTTTTTTGAGTG+AGG - chr5_1:17992991-17993010 None:intergenic 35.0%
TAAATGACTAATGGCTAGGT+GGG - chr5_1:17993023-17993042 None:intergenic 35.0%
CATCTAAATGACTAATGGCT+AGG - chr5_1:17993027-17993046 None:intergenic 35.0%
CAACATAAACCCTGAAAATC+AGG + chr5_1:17993240-17993259 Msa0721420:CDS 35.0%
ATGATTCCGTGCTAAATTAC+AGG + chr5_1:17993305-17993324 Msa0721420:CDS 35.0%
TGATTCCGTGCTAAATTACA+GGG + chr5_1:17993306-17993325 Msa0721420:CDS 35.0%
ACACGTGGAAATCAAATCCA+TGG + chr5_1:17987903-17987922 Msa0721420:five_prime_UTR 40.0%
AATCAAATCCATGGCTGACA+CGG + chr5_1:17987912-17987931 Msa0721420:five_prime_UTR 40.0%
CACGGCAAGATTGAAAATTC+TGG + chr5_1:17987930-17987949 Msa0721420:five_prime_UTR 40.0%
AGAATTTCGACACTTTCGGT+TGG + chr5_1:17987956-17987975 Msa0721420:five_prime_UTR 40.0%
GAATTTCGACACTTTCGGTT+GGG + chr5_1:17987957-17987976 Msa0721420:five_prime_UTR 40.0%
TTTGTCTATCTGCTTCTACG+AGG - chr5_1:17988076-17988095 None:intergenic 40.0%
TAACTGTTGTAGTGGCATAG+CGG - chr5_1:17988459-17988478 None:intergenic 40.0%
AGCTCTTGAATCTTGATGGA+AGG - chr5_1:17988595-17988614 None:intergenic 40.0%
ACTTCACTAAGCCTTAACTC+CGG - chr5_1:17988631-17988650 None:intergenic 40.0%
CACAACAGTCTGTACTCTAT+AGG - chr5_1:17988767-17988786 None:intergenic 40.0%
ACCTCAACAGCAATAAAGAC+CGG + chr5_1:17988896-17988915 Msa0721420:CDS 40.0%
CAGTTCTACGTTCTTTGTTC+AGG + chr5_1:17988935-17988954 Msa0721420:intron 40.0%
ACATACTACCCTTTGCTGAT+GGG - chr5_1:17989353-17989372 None:intergenic 40.0%
TCCTGTTTAGCGCAATTGTT+GGG - chr5_1:17989417-17989436 None:intergenic 40.0%
TTCCTGTTTAGCGCAATTGT+TGG - chr5_1:17989418-17989437 None:intergenic 40.0%
!! GTGATGGGTTAATGGATCTT+GGG - chr5_1:17989441-17989460 None:intergenic 40.0%
!! AGTGATGGGTTAATGGATCT+TGG - chr5_1:17989442-17989461 None:intergenic 40.0%
!! ATACTGGAAGAGTGCTGAAT+GGG - chr5_1:17989513-17989532 None:intergenic 40.0%
AGTTCATGAAACAGGACTAC+AGG + chr5_1:17989718-17989737 Msa0721420:intron 40.0%
GTTCATGAAACAGGACTACA+GGG + chr5_1:17989719-17989738 Msa0721420:intron 40.0%
TTCATGAAACAGGACTACAG+GGG + chr5_1:17989720-17989739 Msa0721420:CDS 40.0%
! GCGTTGACCTGTTTATATGA+TGG - chr5_1:17989758-17989777 None:intergenic 40.0%
AATTGCGCTTCCTTCTGTTA+AGG + chr5_1:17989839-17989858 Msa0721420:CDS 40.0%
! GCACTAACATACTTTTCTGC+AGG + chr5_1:17989949-17989968 Msa0721420:intron 40.0%
! AAAATGATAATGCCAACGGC+GGG - chr5_1:17990020-17990039 None:intergenic 40.0%
! ATTTTTGCAGTATGGGGTGT+TGG + chr5_1:17990035-17990054 Msa0721420:CDS 40.0%
GCTTCTGTAGGTAGAATTAC+TGG - chr5_1:17990401-17990420 None:intergenic 40.0%
GGATAAGGCTTCTCATGAAA+GGG - chr5_1:17990608-17990627 None:intergenic 40.0%
! ACAGAATAGGCACTGCAAAT+TGG - chr5_1:17990780-17990799 None:intergenic 40.0%
GTTAAAATGAGAGAGGAGAG+GGG + chr5_1:17990976-17990995 Msa0721420:intron 40.0%
AGTCAAATGGAGAAAGGACT+AGG - chr5_1:17991125-17991144 None:intergenic 40.0%
TTCGTTAGTTGCAACAAAGG+GGG - chr5_1:17991335-17991354 None:intergenic 40.0%
GTTCGTTAGTTGCAACAAAG+GGG - chr5_1:17991336-17991355 None:intergenic 40.0%
GTGTTCGTTAGTTGCAACAA+AGG - chr5_1:17991338-17991357 None:intergenic 40.0%
! AGTTGTGACCTTTTCATCAG+GGG - chr5_1:17991366-17991385 None:intergenic 40.0%
TGAAAAGGTCACAACTTTGG+GGG + chr5_1:17991370-17991389 Msa0721420:intron 40.0%
! CAACTTTGGGGGAATAAACA+TGG + chr5_1:17991381-17991400 Msa0721420:intron 40.0%
TCATATGATCTTGGTTGGGT+TGG + chr5_1:17991450-17991469 Msa0721420:intron 40.0%
GCGAGGAAAAAAATCATAGG+CGG + chr5_1:17991512-17991531 Msa0721420:intron 40.0%
TATGGAACAAGTTCTCATGG+AGG + chr5_1:17991883-17991902 Msa0721420:intron 40.0%
ATGGAACAAGTTCTCATGGA+GGG + chr5_1:17991884-17991903 Msa0721420:intron 40.0%
ATTGAGACCGGATGAAGTAA+TGG + chr5_1:17992009-17992028 Msa0721420:intron 40.0%
! GAGAGAAAAGCATGTAGAAC+TGG + chr5_1:17992102-17992121 Msa0721420:intron 40.0%
AAACAGCTTTGCCTGCAAAT+TGG - chr5_1:17992373-17992392 None:intergenic 40.0%
!!! ACAGTTTTGTTGACTCTTGC+TGG + chr5_1:17992482-17992501 Msa0721420:CDS 40.0%
CGTAGTTACCTGTGATATTG+TGG + chr5_1:17992571-17992590 Msa0721420:intron 40.0%
CATGAATCATTGCGCTTGAA+AGG - chr5_1:17992642-17992661 None:intergenic 40.0%
! ATTGAAGGATATGAGGTGTC+TGG + chr5_1:17992703-17992722 Msa0721420:CDS 40.0%
TGGTCACCAACAATTATACG+AGG + chr5_1:17992905-17992924 Msa0721420:CDS 40.0%
CTAAATGACTAATGGCTAGG+TGG - chr5_1:17993024-17993043 None:intergenic 40.0%
AGAACATTGTTGCTGACATG+CGG + chr5_1:17993155-17993174 Msa0721420:intron 40.0%
! CTGCTCAACTTGAGGATTTT+TGG - chr5_1:17993191-17993210 None:intergenic 40.0%
CGCTTATGGTATGTATGAAC+TGG + chr5_1:17993263-17993282 Msa0721420:CDS 40.0%
GATTCCGTGCTAAATTACAG+GGG + chr5_1:17993307-17993326 Msa0721420:CDS 40.0%
AAGACCCCTGTAATTTAGCA+CGG - chr5_1:17993314-17993333 None:intergenic 40.0%
GCGCAGAATTTCGACACTTT+CGG + chr5_1:17987952-17987971 Msa0721420:five_prime_UTR 45.0%
! GTTAAAGCGCTATAGCGTAG+CGG - chr5_1:17988524-17988543 None:intergenic 45.0%
CCTCAACAGCAATAAAGACC+GGG + chr5_1:17988897-17988916 Msa0721420:CDS 45.0%
! TACCACTTCATGGTTTGCAG+AGG + chr5_1:17988990-17989009 Msa0721420:intron 45.0%
! ACCACTTCATGGTTTGCAGA+GGG + chr5_1:17988991-17989010 Msa0721420:intron 45.0%
TGTGCCAGCGTTGTTGTAAA+CGG + chr5_1:17989124-17989143 Msa0721420:intron 45.0%
CACATACTACCCTTTGCTGA+TGG - chr5_1:17989354-17989373 None:intergenic 45.0%
!! GATACTGGAAGAGTGCTGAA+TGG - chr5_1:17989514-17989533 None:intergenic 45.0%
TCCACTGCAGTTCATGAAAC+AGG + chr5_1:17989710-17989729 Msa0721420:intron 45.0%
TCCTGTTTCATGAACTGCAG+TGG - chr5_1:17989714-17989733 None:intergenic 45.0%
GTAGTAGCCACCTTAACAGA+AGG - chr5_1:17989852-17989871 None:intergenic 45.0%
!! TGGCTACTACAGTACTGACA+AGG + chr5_1:17989862-17989881 Msa0721420:CDS 45.0%
GCCCATTGATGTTTCAGACA+AGG + chr5_1:17990057-17990076 Msa0721420:CDS 45.0%
AAAGTCGTTCCTTAACAGCC+TGG - chr5_1:17990427-17990446 None:intergenic 45.0%
CGGATAAGGCTTCTCATGAA+AGG - chr5_1:17990609-17990628 None:intergenic 45.0%
GAGGACTTTCCCCAAATCTT+TGG + chr5_1:17990752-17990771 Msa0721420:intron 45.0%
GCAAGCGAGACAAGAAATGT+TGG + chr5_1:17990885-17990904 Msa0721420:intron 45.0%
! AGCAGAAACTGAAGAAGCGT+AGG - chr5_1:17991023-17991042 None:intergenic 45.0%
GTTCCCTTGCTTACTGAAGA+TGG - chr5_1:17991080-17991099 None:intergenic 45.0%
CACAATTCCCCCTGATGAAA+AGG + chr5_1:17991355-17991374 Msa0721420:intron 45.0%
! GTTGTGACCTTTTCATCAGG+GGG - chr5_1:17991365-17991384 None:intergenic 45.0%
ATTGAAGGGAAGAGAATGCG+AGG + chr5_1:17991495-17991514 Msa0721420:intron 45.0%
ACCCATCTATATACTTCGCC+CGG + chr5_1:17991720-17991739 Msa0721420:intron 45.0%
ACCGGGCGAAGTATATAGAT+GGG - chr5_1:17991724-17991743 None:intergenic 45.0%
TACCGGGCGAAGTATATAGA+TGG - chr5_1:17991725-17991744 None:intergenic 45.0%
CAGATGGGATTCCAATTTGC+AGG + chr5_1:17992359-17992378 Msa0721420:intron 45.0%
! TGGGCTTTTCTACCCAGAAA+TGG + chr5_1:17992438-17992457 Msa0721420:CDS 45.0%
! GGGCTTTTCTACCCAGAAAT+GGG + chr5_1:17992439-17992458 Msa0721420:CDS 45.0%
! TCATGCAACTCGACCTTTTG+TGG + chr5_1:17992657-17992676 Msa0721420:CDS 45.0%
TTTCCTGCTATGCAGCATGT+TGG + chr5_1:17992878-17992897 Msa0721420:intron 45.0%
! TGCTGACATGCGGAAAGTAT+TGG + chr5_1:17993165-17993184 Msa0721420:CDS 45.0%
!!! GTTGCACAGGAGAGTGTTTT+TGG + chr5_1:17993216-17993235 Msa0721420:CDS 45.0%
! CCATAAGCGCCTGATTTTCA+GGG - chr5_1:17993252-17993271 None:intergenic 45.0%
! ACCATAAGCGCCTGATTTTC+AGG - chr5_1:17993253-17993272 None:intergenic 45.0%
!! AATAAAATTATTGAAAAATT+GGG - chr5_1:17988179-17988198 None:intergenic 5.0%
GTTCCCTGCAACTGTCTCAT+GGG + chr5_1:17988857-17988876 Msa0721420:CDS 50.0%
! CCCGGTCTTTATTGCTGTTG+AGG - chr5_1:17988900-17988919 None:intergenic 50.0%
! CCACTTCATGGTTTGCAGAG+GGG + chr5_1:17988992-17989011 Msa0721420:intron 50.0%
! TCATGGTTTGCAGAGGGGAA+AGG + chr5_1:17988997-17989016 Msa0721420:intron 50.0%
! CATGGTTTGCAGAGGGGAAA+GGG + chr5_1:17988998-17989017 Msa0721420:intron 50.0%
! ATGGTTTGCAGAGGGGAAAG+GGG + chr5_1:17988999-17989018 Msa0721420:intron 50.0%
GCAACCGTTTACAACAACGC+TGG - chr5_1:17989131-17989150 None:intergenic 50.0%
CGTTGTTGTAAACGGTTGCC+TGG + chr5_1:17989132-17989151 Msa0721420:intron 50.0%
! AAAGGGCATAGTTGCATGCC+AGG - chr5_1:17989153-17989172 None:intergenic 50.0%
TTTGCCACACCCATCAGCAA+AGG + chr5_1:17989341-17989360 Msa0721420:intron 50.0%
TTGCCACACCCATCAGCAAA+GGG + chr5_1:17989342-17989361 Msa0721420:intron 50.0%
TATTGGGTCTTGGTCCTACG+TGG + chr5_1:17989386-17989405 Msa0721420:intron 50.0%
ATTGTTGGGCGTAACCACGT+AGG - chr5_1:17989403-17989422 None:intergenic 50.0%
GCCCAACAATTGCGCTAAAC+AGG + chr5_1:17989413-17989432 Msa0721420:intron 50.0%
TGCGCTTCCTTCTGTTAAGG+TGG + chr5_1:17989842-17989861 Msa0721420:CDS 50.0%
! GTAAAGTTGATTCCCGCCGT+TGG + chr5_1:17990005-17990024 Msa0721420:CDS 50.0%
ACCTTCGACCACTACTGTTG+TGG + chr5_1:17990240-17990259 Msa0721420:CDS 50.0%
TCCACAACAGTAGTGGTCGA+AGG - chr5_1:17990244-17990263 None:intergenic 50.0%
CTGGAGCCGTACTTATTTGC+AGG + chr5_1:17990264-17990283 Msa0721420:CDS 50.0%
TCTACCTACAGAAGCTAGCC+AGG + chr5_1:17990406-17990425 Msa0721420:CDS 50.0%
AGAAGCTAGCCAGGCTGTTA+AGG + chr5_1:17990415-17990434 Msa0721420:CDS 50.0%
! AATTTTGGGCGGTGATGTGC+AGG - chr5_1:17991055-17991074 None:intergenic 50.0%
TCCTGCTGTGACCCATTTCT+GGG - chr5_1:17992453-17992472 None:intergenic 50.0%
!! ATCCTCAAGTTGAGCAGCAG+AGG + chr5_1:17993194-17993213 Msa0721420:CDS 50.0%
AACCTCTGCTGCTCAACTTG+AGG - chr5_1:17993199-17993218 None:intergenic 50.0%
CCCTGAAAATCAGGCGCTTA+TGG + chr5_1:17993249-17993268 Msa0721420:CDS 50.0%
CAATCTTGCCGTGTCAGCCA+TGG - chr5_1:17987923-17987942 None:intergenic 55.0%
TGAGACAGTTGCAGGGAACC+AGG - chr5_1:17988856-17988875 None:intergenic 55.0%
GGTTCCCTGCAACTGTCTCA+TGG + chr5_1:17988856-17988875 Msa0721420:CDS 55.0%
CAGCCCATGAGACAGTTGCA+GGG - chr5_1:17988863-17988882 None:intergenic 55.0%
CTGCAACTGTCTCATGGGCT+GGG + chr5_1:17988862-17988881 Msa0721420:CDS 55.0%
CCCCTCTGCAAACCATGAAG+TGG - chr5_1:17988995-17989014 None:intergenic 55.0%
! CTACCCTTTGCTGATGGGTG+TGG - chr5_1:17989348-17989367 None:intergenic 55.0%
CGACCACTACTGTTGTGGAC+TGG + chr5_1:17990245-17990264 Msa0721420:CDS 55.0%
GCTCCAGTCCACAACAGTAG+TGG - chr5_1:17990251-17990270 None:intergenic 55.0%
!! ACAGCCTGGCTAGCTTCTGT+AGG - chr5_1:17990413-17990432 None:intergenic 55.0%
! ACTGAAGAAGCGTAGGCGTG+TGG - chr5_1:17991016-17991035 None:intergenic 55.0%
AATCCGATCCTACCCCACTG+TGG + chr5_1:17991273-17991292 Msa0721420:intron 55.0%
CGGCGAGAGAGAGATCAGAA+GGG + chr5_1:17991532-17991551 Msa0721420:intron 55.0%
GGCGAGAGAGAGATCAGAAG+GGG + chr5_1:17991533-17991552 Msa0721420:intron 55.0%
GCGAGAGAGAGATCAGAAGG+GGG + chr5_1:17991534-17991553 Msa0721420:intron 55.0%
ACCCAGAAATGGGTCACAGC+AGG + chr5_1:17992449-17992468 Msa0721420:CDS 55.0%
CTCCTGCTGTGACCCATTTC+TGG - chr5_1:17992454-17992473 None:intergenic 55.0%
CAGAAATGGGTCACAGCAGG+AGG + chr5_1:17992452-17992471 Msa0721420:CDS 55.0%
! TGGGTCACAGCAGGAGGTTT+TGG + chr5_1:17992458-17992477 Msa0721420:CDS 55.0%
! GGGTCACAGCAGGAGGTTTT+GGG + chr5_1:17992459-17992478 Msa0721420:CDS 55.0%
! GTTGACTCTTGCTGGTCGTG+AGG + chr5_1:17992490-17992509 Msa0721420:CDS 55.0%
! TGAGGTGTCTGGCACTGTTG+AGG + chr5_1:17992714-17992733 Msa0721420:CDS 55.0%
CAGCCAACATGCTGCATAGC+AGG - chr5_1:17992884-17992903 None:intergenic 55.0%
CTGCTATGCAGCATGTTGGC+TGG + chr5_1:17992882-17992901 Msa0721420:intron 55.0%
! CTATGCAGCATGTTGGCTGG+TGG + chr5_1:17992885-17992904 Msa0721420:intron 55.0%
TTGAGCAGCAGAGGTTGCAC+AGG + chr5_1:17993203-17993222 Msa0721420:CDS 55.0%
CCAGCCCATGAGACAGTTGC+AGG - chr5_1:17988864-17988883 None:intergenic 60.0%
CCTGCAACTGTCTCATGGGC+TGG + chr5_1:17988861-17988880 Msa0721420:CDS 60.0%
!! CTCATGGGCTGGGACTTTGC+AGG + chr5_1:17988872-17988891 Msa0721420:CDS 60.0%
! GGAAGCGCAATTCGTTCGCC+TGG - chr5_1:17989831-17989850 None:intergenic 60.0%
CCACCACAGTGGGGTAGGAT+CGG - chr5_1:17991279-17991298 None:intergenic 60.0%
ACGACCAAGCCACCACAGTG+GGG - chr5_1:17991288-17991307 None:intergenic 60.0%
CACGACCAAGCCACCACAGT+GGG - chr5_1:17991289-17991308 None:intergenic 60.0%
ACACGACCAAGCCACCACAG+TGG - chr5_1:17991290-17991309 None:intergenic 60.0%
GCGGCGAGAGAGAGATCAGA+AGG + chr5_1:17991531-17991550 Msa0721420:intron 60.0%
CCGATCCTACCCCACTGTGG+TGG + chr5_1:17991276-17991295 Msa0721420:intron 65.0%
CCAAGCCACCACAGTGGGGT+AGG - chr5_1:17991284-17991303 None:intergenic 65.0%
CCTACCCCACTGTGGTGGCT+TGG + chr5_1:17991281-17991300 Msa0721420:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 17987894 17993376 17987894 ID=Msa0721420;Name=Msa0721420
chr5_1 mRNA 17987894 17993376 17987894 ID=Msa0721420-mRNA-1;Parent=Msa0721420;Name=Msa0721420-mRNA-1;_AED=0.12;_eAED=0.12;_QI=382|1|1|1|0.72|0.58|12|37|432
chr5_1 exon 17987894 17988149 17987894 ID=Msa0721420-mRNA-1:exon:6859;Parent=Msa0721420-mRNA-1
chr5_1 exon 17988718 17988918 17988718 ID=Msa0721420-mRNA-1:exon:6860;Parent=Msa0721420-mRNA-1
chr5_1 exon 17989010 17989060 17989010 ID=Msa0721420-mRNA-1:exon:6861;Parent=Msa0721420-mRNA-1
chr5_1 exon 17989720 17989883 17989720 ID=Msa0721420-mRNA-1:exon:6862;Parent=Msa0721420-mRNA-1
chr5_1 exon 17989971 17990094 17989971 ID=Msa0721420-mRNA-1:exon:6863;Parent=Msa0721420-mRNA-1
chr5_1 exon 17990188 17990285 17990188 ID=Msa0721420-mRNA-1:exon:6864;Parent=Msa0721420-mRNA-1
chr5_1 exon 17990388 17990501 17990388 ID=Msa0721420-mRNA-1:exon:6865;Parent=Msa0721420-mRNA-1
chr5_1 exon 17990842 17990902 17990842 ID=Msa0721420-mRNA-1:exon:6866;Parent=Msa0721420-mRNA-1
chr5_1 exon 17992362 17992511 17992362 ID=Msa0721420-mRNA-1:exon:6867;Parent=Msa0721420-mRNA-1
chr5_1 exon 17992625 17992735 17992625 ID=Msa0721420-mRNA-1:exon:6868;Parent=Msa0721420-mRNA-1
chr5_1 exon 17992893 17993060 17992893 ID=Msa0721420-mRNA-1:exon:6869;Parent=Msa0721420-mRNA-1
chr5_1 exon 17993157 17993376 17993157 ID=Msa0721420-mRNA-1:exon:6870;Parent=Msa0721420-mRNA-1
chr5_1 five_prime_UTR 17987894 17988149 17987894 ID=Msa0721420-mRNA-1:five_prime_utr;Parent=Msa0721420-mRNA-1
chr5_1 five_prime_UTR 17988718 17988843 17988718 ID=Msa0721420-mRNA-1:five_prime_utr;Parent=Msa0721420-mRNA-1
chr5_1 CDS 17988844 17988918 17988844 ID=Msa0721420-mRNA-1:cds;Parent=Msa0721420-mRNA-1
chr5_1 CDS 17989010 17989060 17989010 ID=Msa0721420-mRNA-1:cds;Parent=Msa0721420-mRNA-1
chr5_1 CDS 17989720 17989883 17989720 ID=Msa0721420-mRNA-1:cds;Parent=Msa0721420-mRNA-1
chr5_1 CDS 17989971 17990094 17989971 ID=Msa0721420-mRNA-1:cds;Parent=Msa0721420-mRNA-1
chr5_1 CDS 17990188 17990285 17990188 ID=Msa0721420-mRNA-1:cds;Parent=Msa0721420-mRNA-1
chr5_1 CDS 17990388 17990501 17990388 ID=Msa0721420-mRNA-1:cds;Parent=Msa0721420-mRNA-1
chr5_1 CDS 17990842 17990902 17990842 ID=Msa0721420-mRNA-1:cds;Parent=Msa0721420-mRNA-1
chr5_1 CDS 17992362 17992511 17992362 ID=Msa0721420-mRNA-1:cds;Parent=Msa0721420-mRNA-1
chr5_1 CDS 17992625 17992735 17992625 ID=Msa0721420-mRNA-1:cds;Parent=Msa0721420-mRNA-1
chr5_1 CDS 17992893 17993060 17992893 ID=Msa0721420-mRNA-1:cds;Parent=Msa0721420-mRNA-1
chr5_1 CDS 17993157 17993339 17993157 ID=Msa0721420-mRNA-1:cds;Parent=Msa0721420-mRNA-1
chr5_1 three_prime_UTR 17993340 17993376 17993340 ID=Msa0721420-mRNA-1:three_prime_utr;Parent=Msa0721420-mRNA-1
Gene Sequence

>Msa0721420

ATGGCTCTTCCTGGTTCCCTGCAACTGTCTCATGGGCTGGGACTTTGCAGGAACCTCAACAGCAATAAAGACCGGAGGGGAAAGGGGAGATGCAAGATGCAGTTATTCAATGCATATCCAGTTTCGTTCATGAAACAGGACTACAGGGGTCTTCAACACCTCCATCATATAAACAGGTCAACGCATAGATTGTCTCGCAAATCACGCTCTTTTAAATGTCATTGTTTTTTAGTGCCAGGCGAACGAATTGCGCTTCCTTCTGTTAAGGTGGCTACTACAGTACTGACAAGGTGCTGTAATGTATTACAAAATCGTCCAGTCATTGTAAAGTTGATTCCCGCCGTTGGCATTATCATTTTTGCAGTATGGGGTGTTGGCCCATTGATGTTTCAGACAAGGAAACTGTTTTTTCAGAAGAGTGATAATAGTTGGAAAAAAAGTACCACTCATTACATAGTAACTTCATACCTTCGACCACTACTGTTGTGGACTGGAGCCGTACTTATTTGCAGAGCATTTGAGCCAGTAATTCTACCTACAGAAGCTAGCCAGGCTGTTAAGGAACGACTTTTGAATTTTGTTAAATCATTGTCGACTGTAGTGGCTTTTGCCTATTGTTTATCAAGTGTAATTCAACAAGCTCAGAAAATTGTAACAGAGAATGTAGATGCAAGCGAGACAAGAAATATGGGATTCCAATTTGCAGGCAAAGCTGTTTATTCTGCAGTATGGATTGCTGCTTTTTCATTGTTTATGGAATTGCTGGGCTTTTCTACCCAGAAATGGGTCACAGCAGGAGGTTTTGGGACAGTTTTGTTGACTCTTGCTGGTCGTGAGATATTTACAAACTTCCTTTCAAGCGCAATGATTCATGCAACTCGACCTTTTGTGGTAAATGAATGGATTCAAACGAAGATTGAAGGATATGAGGTGTCTGGCACTGTTGAGCATGTTGGCTGGTGGTCACCAACAATTATACGAGGTGAAGATCGTGAAGCTGTACACATTCCAAACCACAAATTTACAGTGAATGTTGTGCGGAACCTCACTCAAAAAACACATTGGAGAATCAAAACCCACCTAGCCATTAGTCATTTAGATGTAAATAAGATTAATAACATTGTTGCTGACATGCGGAAAGTATTGGCCAAAAATCCTCAAGTTGAGCAGCAGAGGTTGCACAGGAGAGTGTTTTTGGACAACATAAACCCTGAAAATCAGGCGCTTATGGTATGTATGAACTGGTTACAGTATCTTGCAATCAATGATTCCGTGCTAAATTACAGGGGTCTTAAATAA

Protein sequence

>Msa0721420

MALPGSLQLSHGLGLCRNLNSNKDRRGKGRCKMQLFNAYPVSFMKQDYRGLQHLHHINRSTHRLSRKSRSFKCHCFLVPGERIALPSVKVATTVLTRCCNVLQNRPVIVKLIPAVGIIIFAVWGVGPLMFQTRKLFFQKSDNSWKKSTTHYIVTSYLRPLLLWTGAVLICRAFEPVILPTEASQAVKERLLNFVKSLSTVVAFAYCLSSVIQQAQKIVTENVDASETRNMGFQFAGKAVYSAVWIAAFSLFMELLGFSTQKWVTAGGFGTVLLTLAGREIFTNFLSSAMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHKFTVNVVRNLTQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALMVCMNWLQYLAINDSVLNYRGLK*