Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0721420 | XP_003613048.2 | 92.610 | 433 | 24 | 2 | 1 | 426 | 1 | 432 | 0.0 | 836 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0721420 | sp|Q56X46|MSL2_ARATH | 63.073 | 436 | 150 | 3 | 1 | 426 | 1 | 435 | 0.0 | 573 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0721420 | G7JWE5 | 92.610 | 433 | 24 | 2 | 1 | 426 | 1 | 432 | 0.0 | 836 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0619480 | Msa0721420 | 0.811184 | 7.949211e-51 | -8.615850e-47 |
Msa0659640 | Msa0721420 | 0.819986 | 8.706781e-53 | -8.615850e-47 |
Msa0721420 | Msa0733570 | 0.816933 | 4.282157e-52 | -8.615850e-47 |
Msa0721420 | Msa0736330 | 0.826405 | 2.762088e-54 | -8.615850e-47 |
Msa0721420 | Msa0736930 | 0.815676 | 8.182282e-52 | -8.615850e-47 |
Msa0721420 | Msa0751000 | 0.809474 | 1.859100e-50 | -8.615850e-47 |
Msa0721420 | Msa0766880 | 0.801502 | 8.735152e-49 | -8.615850e-47 |
Msa0721420 | Msa0774020 | 0.801062 | 1.074942e-48 | -8.615850e-47 |
Msa0721420 | Msa0774680 | 0.820200 | 7.775439e-53 | -8.615850e-47 |
Msa0721420 | Msa0794040 | 0.809635 | 1.716234e-50 | -8.615850e-47 |
Msa0721420 | Msa0812230 | 0.807655 | 4.546034e-50 | -8.615850e-47 |
Msa0721420 | Msa0821490 | 0.816488 | 5.388986e-52 | -8.615850e-47 |
Msa0721420 | Msa0855490 | 0.845360 | 4.263502e-59 | -8.615850e-47 |
Msa0721420 | Msa0866580 | 0.805738 | 1.154710e-49 | -8.615850e-47 |
Msa0721420 | Msa1033230 | 0.839301 | 1.720020e-57 | -8.615850e-47 |
Msa0721420 | Msa1072770 | 0.804511 | 2.086026e-49 | -8.615850e-47 |
Msa0721420 | Msa1124180 | 0.814198 | 1.740985e-51 | -8.615850e-47 |
Msa0721420 | Msa1179680 | 0.811317 | 7.435661e-51 | -8.615850e-47 |
Msa0721420 | Msa1195860 | 0.803949 | 2.730322e-49 | -8.615850e-47 |
Msa0721420 | Msa1232640 | 0.824957 | 6.091185e-54 | -8.615850e-47 |
Msa0721420 | Msa1264230 | 0.809609 | 1.739115e-50 | -8.615850e-47 |
Msa0721420 | Msa1265250 | 0.822530 | 2.254932e-53 | -8.615850e-47 |
Msa0721420 | Msa1316160 | 0.840163 | 1.025849e-57 | -8.615850e-47 |
Msa0721420 | Msa1337520 | 0.821614 | 3.676379e-53 | -8.615850e-47 |
Msa0721420 | Msa1373590 | 0.804589 | 2.008637e-49 | -8.615850e-47 |
Msa0721420 | Msa1385940 | 0.824738 | 6.861102e-54 | -8.615850e-47 |
Msa0721420 | Msa1425630 | 0.822160 | 2.748015e-53 | -8.615850e-47 |
Msa0175900 | Msa0721420 | 0.809287 | 2.038455e-50 | -8.615850e-47 |
Msa0216010 | Msa0721420 | 0.815385 | 9.501217e-52 | -8.615850e-47 |
Msa0222510 | Msa0721420 | 0.809372 | 1.954641e-50 | -8.615850e-47 |
Msa0377460 | Msa0721420 | 0.826717 | 2.327562e-54 | -8.615850e-47 |
Msa0426990 | Msa0721420 | 0.815980 | 7.000046e-52 | -8.615850e-47 |
Msa0473320 | Msa0721420 | 0.823612 | 1.260975e-53 | -8.615850e-47 |
Msa0473450 | Msa0721420 | 0.817864 | 2.642986e-52 | -8.615850e-47 |
Msa0517400 | Msa0721420 | 0.823678 | 1.216825e-53 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0721420 | MtrunA17_Chr5g0412241 | 92.610 | 433 | 24 | 2 | 1 | 426 | 1 | 432 | 0.0 | 836 |
Msa0721420 | MtrunA17_Chr3g0132931 | 62.132 | 441 | 144 | 7 | 1 | 426 | 12 | 444 | 0.0 | 553 |
Msa0721420 | MtrunA17_Chr3g0132961 | 55.134 | 448 | 166 | 9 | 1 | 426 | 13 | 447 | 6.20e-165 | 477 |
Msa0721420 | MtrunA17_Chr3g0132941 | 41.964 | 112 | 47 | 5 | 307 | 408 | 133 | 236 | 4.38e-12 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0721420 | AT5G10490.1 | 63.073 | 436 | 150 | 3 | 1 | 426 | 1 | 435 | 0.0 | 573 |
Msa0721420 | AT5G10490.3 | 62.850 | 428 | 148 | 3 | 9 | 426 | 7 | 433 | 0.0 | 562 |
Msa0721420 | AT5G10490.2 | 69.755 | 367 | 103 | 2 | 67 | 426 | 42 | 407 | 0.0 | 552 |
Msa0721420 | AT1G58200.2 | 62.821 | 390 | 137 | 2 | 45 | 426 | 48 | 437 | 9.18e-180 | 518 |
Msa0721420 | AT1G58200.1 | 62.821 | 390 | 137 | 2 | 45 | 426 | 48 | 437 | 9.18e-180 | 518 |
Find 107 sgRNAs with CRISPR-Local
Find 344 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCCTGCTGTGACCCATTTC+TGG | 0.154402 | 5_1:-17992451 | None:intergenic |
TTCATTGTTTATGGAATTGC+TGG | 0.209952 | 5_1:+17992418 | Msa0721420:CDS |
CCCTGAAAATCAGGCGCTTA+TGG | 0.229014 | 5_1:+17993249 | Msa0721420:CDS |
TGGGTCACAGCAGGAGGTTT+TGG | 0.264140 | 5_1:+17992458 | Msa0721420:CDS |
AAACAGCTTTGCCTGCAAAT+TGG | 0.292527 | 5_1:-17992370 | None:intergenic |
TTGATTTGATACATTAATAA+TGG | 0.300417 | 5_1:+17988825 | Msa0721420:exon |
CTGGAGCCGTACTTATTTGC+AGG | 0.302317 | 5_1:+17990264 | Msa0721420:CDS |
CAGATGGGATTCCAATTTGC+AGG | 0.306719 | 5_1:+17992359 | Msa0721420:intron |
CCTGCAACTGTCTCATGGGC+TGG | 0.329194 | 5_1:+17988861 | Msa0721420:CDS |
TTCACTGTAAATTTGTGGTT+TGG | 0.331136 | 5_1:-17992953 | None:intergenic |
AAGCTGTTTATTCTGCAGTA+TGG | 0.334963 | 5_1:+17992384 | Msa0721420:CDS |
ATGATTCCGTGCTAAATTAC+AGG | 0.338722 | 5_1:+17993305 | Msa0721420:CDS |
CTCATGGGCTGGGACTTTGC+AGG | 0.348404 | 5_1:+17988872 | Msa0721420:CDS |
CACGGCAAGATTGAAAATTC+TGG | 0.351780 | 5_1:+17987930 | Msa0721420:five_prime_UTR |
GCGCAGAATTTCGACACTTT+CGG | 0.360962 | 5_1:+17987952 | Msa0721420:five_prime_UTR |
CACAACAGTCTGTACTCTAT+AGG | 0.361922 | 5_1:-17988764 | None:intergenic |
TCCTGCTGTGACCCATTTCT+GGG | 0.363829 | 5_1:-17992450 | None:intergenic |
AGAAGCTAGCCAGGCTGTTA+AGG | 0.368941 | 5_1:+17990415 | Msa0721420:CDS |
ATCCATTCATTTACCACAAA+AGG | 0.372902 | 5_1:-17992670 | None:intergenic |
CAACATAAACCCTGAAAATC+AGG | 0.374249 | 5_1:+17993240 | Msa0721420:CDS |
CCAGCCCATGAGACAGTTGC+AGG | 0.377482 | 5_1:-17988861 | None:intergenic |
GGTTCCCTGCAACTGTCTCA+TGG | 0.378252 | 5_1:+17988856 | Msa0721420:CDS |
ATTTACATCTAAATGACTAA+TGG | 0.383147 | 5_1:-17993029 | None:intergenic |
GCTTCTGTAGGTAGAATTAC+TGG | 0.386567 | 5_1:-17990398 | None:intergenic |
ACAACAGTCTGTACTCTATA+GGG | 0.399252 | 5_1:-17988763 | None:intergenic |
CATGGTTTGCAGAGGGGAAA+GGG | 0.403892 | 5_1:+17988998 | Msa0721420:intron |
CAACATTCACTGTAAATTTG+TGG | 0.406561 | 5_1:-17992958 | None:intergenic |
TCCACTGCAGTTCATGAAAC+AGG | 0.407725 | 5_1:+17989710 | Msa0721420:intron |
ACATTAATAATGGCTCTTCC+TGG | 0.408042 | 5_1:+17988835 | Msa0721420:exon |
CTGCAACTGTCTCATGGGCT+GGG | 0.410328 | 5_1:+17988862 | Msa0721420:CDS |
ATTCAATGCATATCCAGTTT+CGG | 0.413959 | 5_1:+17989039 | Msa0721420:CDS |
CTGCTATGCAGCATGTTGGC+TGG | 0.422368 | 5_1:+17992882 | Msa0721420:intron |
TTCCTTGTCTGAAACATCAA+TGG | 0.423767 | 5_1:-17990059 | None:intergenic |
CGCTTATGGTATGTATGAAC+TGG | 0.425197 | 5_1:+17993263 | Msa0721420:CDS |
AATTGCGCTTCCTTCTGTTA+AGG | 0.434176 | 5_1:+17989839 | Msa0721420:CDS |
TCAAAATTTGCAATACTACT+TGG | 0.434428 | 5_1:+17988798 | Msa0721420:five_prime_UTR |
GAATTTCGACACTTTCGGTT+GGG | 0.434680 | 5_1:+17987957 | Msa0721420:five_prime_UTR |
GGAATCAACTTTACAATGAC+TGG | 0.435897 | 5_1:-17989996 | None:intergenic |
AACACCTCCATCATATAAAC+AGG | 0.444100 | 5_1:+17989748 | Msa0721420:CDS |
CCCGGTCTTTATTGCTGTTG+AGG | 0.450363 | 5_1:-17988897 | None:intergenic |
TCTTCACCTCGTATAATTGT+TGG | 0.451139 | 5_1:-17992911 | None:intergenic |
GTTCCCTGCAACTGTCTCAT+GGG | 0.456123 | 5_1:+17988857 | Msa0721420:CDS |
CATGAATCATTGCGCTTGAA+AGG | 0.462593 | 5_1:-17992639 | None:intergenic |
TGCAGAAGAGTGATAATAGT+TGG | 0.463555 | 5_1:+17990183 | Msa0721420:intron |
GGCATACCTTGATAAACAAT+AGG | 0.464220 | 5_1:-17990486 | None:intergenic |
AGAATTTCGACACTTTCGGT+TGG | 0.465603 | 5_1:+17987956 | Msa0721420:five_prime_UTR |
TCTACCTACAGAAGCTAGCC+AGG | 0.470503 | 5_1:+17990406 | Msa0721420:CDS |
CAATCTTGCCGTGTCAGCCA+TGG | 0.475221 | 5_1:-17987920 | None:intergenic |
TTGAGCAGCAGAGGTTGCAC+AGG | 0.475903 | 5_1:+17993203 | Msa0721420:CDS |
TATTAATGTATCAAATCAAA+TGG | 0.475953 | 5_1:-17988821 | None:intergenic |
TCATGGTTTGCAGAGGGGAA+AGG | 0.479104 | 5_1:+17988997 | Msa0721420:intron |
GGAAGCGCAATTCGTTCGCC+TGG | 0.491141 | 5_1:-17989828 | None:intergenic |
ATTTAATTGATTATTGATTG+TGG | 0.493482 | 5_1:-17987981 | None:intergenic |
AGTTCATGAAACAGGACTAC+AGG | 0.497346 | 5_1:+17989718 | Msa0721420:intron |
TCATTGTTTATGGAATTGCT+GGG | 0.497570 | 5_1:+17992419 | Msa0721420:CDS |
TCCTTGTCTGAAACATCAAT+GGG | 0.500430 | 5_1:-17990058 | None:intergenic |
ATTGAAGGATATGAGGTGTC+TGG | 0.508645 | 5_1:+17992703 | Msa0721420:CDS |
AACGAAGATTGAAGGATATG+AGG | 0.513606 | 5_1:+17992696 | Msa0721420:CDS |
TGGATTCAAACGAAGATTGA+AGG | 0.514774 | 5_1:+17992688 | Msa0721420:CDS |
TGAGACAGTTGCAGGGAACC+AGG | 0.519352 | 5_1:-17988853 | None:intergenic |
ACCCAGAAATGGGTCACAGC+AGG | 0.524431 | 5_1:+17992449 | Msa0721420:CDS |
ACCTCAACAGCAATAAAGAC+CGG | 0.528072 | 5_1:+17988896 | Msa0721420:CDS |
GCGTTGACCTGTTTATATGA+TGG | 0.539034 | 5_1:-17989755 | None:intergenic |
AAAGTCGTTCCTTAACAGCC+TGG | 0.540283 | 5_1:-17990424 | None:intergenic |
TGCTGACATGCGGAAAGTAT+TGG | 0.540499 | 5_1:+17993165 | Msa0721420:CDS |
TGCGCTTCCTTCTGTTAAGG+TGG | 0.542081 | 5_1:+17989842 | Msa0721420:CDS |
TAAATGACTAATGGCTAGGT+GGG | 0.548938 | 5_1:-17993020 | None:intergenic |
ACCTTCGACCACTACTGTTG+TGG | 0.550457 | 5_1:+17990240 | Msa0721420:CDS |
TAAATCATTGTCGACTGTAG+TGG | 0.552113 | 5_1:+17990457 | Msa0721420:CDS |
AATCAAATCCATGGCTGACA+CGG | 0.554843 | 5_1:+17987912 | Msa0721420:five_prime_UTR |
AACCTCTGCTGCTCAACTTG+AGG | 0.556309 | 5_1:-17993196 | None:intergenic |
GCCCATTGATGTTTCAGACA+AGG | 0.557479 | 5_1:+17990057 | Msa0721420:CDS |
ATCCTCAAGTTGAGCAGCAG+AGG | 0.557486 | 5_1:+17993194 | Msa0721420:CDS |
CATCTAAATGACTAATGGCT+AGG | 0.558832 | 5_1:-17993024 | None:intergenic |
GTGAAACCTGCAAATAAGTA+CGG | 0.563725 | 5_1:-17990270 | None:intergenic |
TGATTCCGTGCTAAATTACA+GGG | 0.564374 | 5_1:+17993306 | Msa0721420:CDS |
AAGACCCCTGTAATTTAGCA+CGG | 0.564447 | 5_1:-17993311 | None:intergenic |
CGACCACTACTGTTGTGGAC+TGG | 0.567856 | 5_1:+17990245 | Msa0721420:CDS |
GTAAAGTTGATTCCCGCCGT+TGG | 0.568974 | 5_1:+17990005 | Msa0721420:CDS |
ATGGTTTGCAGAGGGGAAAG+GGG | 0.571464 | 5_1:+17988999 | Msa0721420:intron |
GTTCATGAAACAGGACTACA+GGG | 0.577067 | 5_1:+17989719 | Msa0721420:intron |
CTAAATGACTAATGGCTAGG+TGG | 0.579708 | 5_1:-17993021 | None:intergenic |
TTTCCTGCTATGCAGCATGT+TGG | 0.592657 | 5_1:+17992878 | Msa0721420:intron |
CTATGCAGCATGTTGGCTGG+TGG | 0.593054 | 5_1:+17992885 | Msa0721420:intron |
GTTGACTCTTGCTGGTCGTG+AGG | 0.596075 | 5_1:+17992490 | Msa0721420:CDS |
ACACGTGGAAATCAAATCCA+TGG | 0.602278 | 5_1:+17987903 | Msa0721420:five_prime_UTR |
CAGAAATGGGTCACAGCAGG+AGG | 0.610702 | 5_1:+17992452 | Msa0721420:CDS |
GTAGTAGCCACCTTAACAGA+AGG | 0.612590 | 5_1:-17989849 | None:intergenic |
ACAGCCTGGCTAGCTTCTGT+AGG | 0.614293 | 5_1:-17990410 | None:intergenic |
AAAATGATAATGCCAACGGC+GGG | 0.615340 | 5_1:-17990017 | None:intergenic |
TTTGTGACCTAACTCAACAA+TGG | 0.618240 | 5_1:-17988099 | None:intergenic |
CCTCAACAGCAATAAAGACC+GGG | 0.619667 | 5_1:+17988897 | Msa0721420:CDS |
AATTTACAGTGAATGTTGTG+CGG | 0.627582 | 5_1:+17992963 | Msa0721420:CDS |
GCTCCAGTCCACAACAGTAG+TGG | 0.636987 | 5_1:-17990248 | None:intergenic |
ACTTTGTCAATCTTTCAACT+CGG | 0.637694 | 5_1:-17988722 | None:intergenic |
TTGACCTGTTTATATGATGG+AGG | 0.637854 | 5_1:-17989752 | None:intergenic |
TCCACAACAGTAGTGGTCGA+AGG | 0.642801 | 5_1:-17990241 | None:intergenic |
TGAAGTTACTATGTAATGAG+TGG | 0.643990 | 5_1:-17990216 | None:intergenic |
CAGCCCATGAGACAGTTGCA+GGG | 0.673799 | 5_1:-17988860 | None:intergenic |
TGAGGTGTCTGGCACTGTTG+AGG | 0.674638 | 5_1:+17992714 | Msa0721420:CDS |
TTTGTCTATCTGCTTCTACG+AGG | 0.681568 | 5_1:-17988073 | None:intergenic |
AGAACATTGTTGCTGACATG+CGG | 0.687401 | 5_1:+17993155 | Msa0721420:intron |
TGGCTACTACAGTACTGACA+AGG | 0.701942 | 5_1:+17989862 | Msa0721420:CDS |
GAACGTTTGAAGTAGACACG+TGG | 0.721212 | 5_1:+17987888 | None:intergenic |
TGGTCACCAACAATTATACG+AGG | 0.753319 | 5_1:+17992905 | Msa0721420:CDS |
GATTCCGTGCTAAATTACAG+GGG | 0.755065 | 5_1:+17993307 | Msa0721420:CDS |
TTCATGAAACAGGACTACAG+GGG | 0.786260 | 5_1:+17989720 | Msa0721420:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CAATAAAATTATTGAAAAAT+TGG | - | chr5_1:17988180-17988199 | None:intergenic | 10.0% |
!!! | TTTTAAAAATAATAGACAAT+CGG | - | chr5_1:17990629-17990648 | None:intergenic | 10.0% |
!! | AACAATATCAATTAATATAT+GGG | - | chr5_1:17991665-17991684 | None:intergenic | 10.0% |
!! | AAACAATATCAATTAATATA+TGG | - | chr5_1:17991666-17991685 | None:intergenic | 10.0% |
!! | ATAATGTAATAAAAAAGTAA+TGG | - | chr5_1:17991924-17991943 | None:intergenic | 10.0% |
!! | AAAATATCATAAAACAATAT+TGG | - | chr5_1:17993105-17993124 | None:intergenic | 10.0% |
!!! | ATTTAATTGATTATTGATTG+TGG | - | chr5_1:17987984-17988003 | None:intergenic | 15.0% |
!! | TATTAATGTATCAAATCAAA+TGG | - | chr5_1:17988824-17988843 | None:intergenic | 15.0% |
!!! | TTGATTTGATACATTAATAA+TGG | + | chr5_1:17988825-17988844 | Msa0721420:exon | 15.0% |
!! | TTCTTAAAAACATTAAGATA+TGG | + | chr5_1:17989066-17989085 | Msa0721420:intron | 15.0% |
!! | ATTCAAATTTCAAAGAAAAA+GGG | - | chr5_1:17989170-17989189 | None:intergenic | 15.0% |
!! | AATTCAAATTTCAAAGAAAA+AGG | - | chr5_1:17989171-17989190 | None:intergenic | 15.0% |
!! | ACTGATGTTATATATATAAA+AGG | + | chr5_1:17990931-17990950 | Msa0721420:intron | 15.0% |
!! | CTGATGTTATATATATAAAA+GGG | + | chr5_1:17990932-17990951 | Msa0721420:intron | 15.0% |
!! | TGATGTTATATATATAAAAG+GGG | + | chr5_1:17990933-17990952 | Msa0721420:intron | 15.0% |
!!! | TTTTTACTTAAAATCAATAC+CGG | - | chr5_1:17991742-17991761 | None:intergenic | 15.0% |
!! | TATATTTCTTAACTACCAAA+TGG | - | chr5_1:17988312-17988331 | None:intergenic | 20.0% |
!!! | ATTTGGTAGTTAAGAAATAT+AGG | + | chr5_1:17988311-17988330 | Msa0721420:intron | 20.0% |
!!! | TTTGGTAGTTAAGAAATATA+GGG | + | chr5_1:17988312-17988331 | Msa0721420:intron | 20.0% |
!! | TTGTAGATAGTAAAAAATAG+CGG | + | chr5_1:17988421-17988440 | Msa0721420:intron | 20.0% |
!! | TTTAACAATACTAGACTATT+CGG | + | chr5_1:17988551-17988570 | Msa0721420:intron | 20.0% |
!!! | TACTGTTCAATTTTGATTAT+TGG | + | chr5_1:17989281-17989300 | Msa0721420:intron | 20.0% |
!! | CAATTTCTTTAATCTAGAAA+AGG | - | chr5_1:17989646-17989665 | None:intergenic | 20.0% |
!! | AGATTAGAAGAAATCTTAAT+GGG | - | chr5_1:17991102-17991121 | None:intergenic | 20.0% |
!! | TCCTAAATTATGTTGAAAAA+TGG | + | chr5_1:17991204-17991223 | Msa0721420:intron | 20.0% |
!!! | TCCATTTTTCAACATAATTT+AGG | - | chr5_1:17991208-17991227 | None:intergenic | 20.0% |
!!! | ACGCTTTTAAAAAATATTGA+AGG | + | chr5_1:17991480-17991499 | Msa0721420:intron | 20.0% |
!!! | CGCTTTTAAAAAATATTGAA+GGG | + | chr5_1:17991481-17991500 | Msa0721420:intron | 20.0% |
!! | ATTAGATCAAATTAATGGTT+AGG | - | chr5_1:17991586-17991605 | None:intergenic | 20.0% |
!!! | TAACCATTAATTTGATCTAA+TGG | + | chr5_1:17991585-17991604 | Msa0721420:intron | 20.0% |
!! | ATTAATTGATATTGTTTAGC+TGG | + | chr5_1:17991669-17991688 | Msa0721420:intron | 20.0% |
!!! | TTTTACTTAAAATCAATACC+GGG | - | chr5_1:17991741-17991760 | None:intergenic | 20.0% |
!! | TTAACTAAGAGTCTTAATTA+GGG | + | chr5_1:17991962-17991981 | Msa0721420:intron | 20.0% |
!!! | TGAGCAAAAATAATTCATTT+TGG | + | chr5_1:17992163-17992182 | Msa0721420:intron | 20.0% |
!!! | TCCTTTTAATTATTGAATGT+TGG | + | chr5_1:17992750-17992769 | Msa0721420:intron | 20.0% |
!! | TCCAACATTCAATAATTAAA+AGG | - | chr5_1:17992754-17992773 | None:intergenic | 20.0% |
!! | ATTTACATCTAAATGACTAA+TGG | - | chr5_1:17993032-17993051 | None:intergenic | 20.0% |
! | AGTCTAGTATTGTTAAATAG+CGG | - | chr5_1:17988548-17988567 | None:intergenic | 25.0% |
! | TCAAAATTTGCAATACTACT+TGG | + | chr5_1:17988798-17988817 | Msa0721420:five_prime_UTR | 25.0% |
!!! | CTTTTTTTTTTACCACTTCA+TGG | + | chr5_1:17988980-17988999 | Msa0721420:intron | 25.0% |
! | AATTTGAATTACAGATTTCG+TGG | + | chr5_1:17989181-17989200 | Msa0721420:intron | 25.0% |
!!! | TTTCGTGGTACTTTTTTTAT+AGG | + | chr5_1:17989196-17989215 | Msa0721420:intron | 25.0% |
!! | TGAAATTTTATGCTAGTGAT+GGG | - | chr5_1:17989456-17989475 | None:intergenic | 25.0% |
!! | ATGAAATTTTATGCTAGTGA+TGG | - | chr5_1:17989457-17989476 | None:intergenic | 25.0% |
! | TTGTAAACCTGATTTAATGA+TGG | + | chr5_1:17989570-17989589 | Msa0721420:intron | 25.0% |
!! | TAAGTGCTCTATCTTTTAAT+TGG | + | chr5_1:17989923-17989942 | Msa0721420:intron | 25.0% |
!!! | CATTATCATTTTTGCAGTAT+GGG | + | chr5_1:17990028-17990047 | Msa0721420:CDS | 25.0% |
!!! | ATTATCATTTTTGCAGTATG+GGG | + | chr5_1:17990029-17990048 | Msa0721420:CDS | 25.0% |
!!! | TTTTCAGGTTATTTAGCAAT+CGG | + | chr5_1:17990088-17990107 | Msa0721420:intron | 25.0% |
! | GTTCAAATTGATGAATTGTT+TGG | + | chr5_1:17990533-17990552 | Msa0721420:intron | 25.0% |
! | CCTAGTTAATTAAGCTATTT+CGG | + | chr5_1:17990571-17990590 | Msa0721420:intron | 25.0% |
!! | CTAGTTAATTAAGCTATTTC+GGG | + | chr5_1:17990572-17990591 | Msa0721420:intron | 25.0% |
! | AAATAATAGACAATCGGATA+AGG | - | chr5_1:17990623-17990642 | None:intergenic | 25.0% |
! | GCAGTTAGACAAAAAAAAAT+AGG | - | chr5_1:17990661-17990680 | None:intergenic | 25.0% |
!! | TACTGAAGATGGTAAATTTT+GGG | - | chr5_1:17991069-17991088 | None:intergenic | 25.0% |
!! | TTACTGAAGATGGTAAATTT+TGG | - | chr5_1:17991070-17991089 | None:intergenic | 25.0% |
! | GAGATTAGAAGAAATCTTAA+TGG | - | chr5_1:17991103-17991122 | None:intergenic | 25.0% |
! | TAATTAAGTCAAATGGAGAA+AGG | - | chr5_1:17991131-17991150 | None:intergenic | 25.0% |
! | ACAGTCATAATTAAGTCAAA+TGG | - | chr5_1:17991138-17991157 | None:intergenic | 25.0% |
!!! | ACTTGATTGCTACTTTTTTT+TGG | - | chr5_1:17991431-17991450 | None:intergenic | 25.0% |
! | AAGCCATTAGATCAAATTAA+TGG | - | chr5_1:17991591-17991610 | None:intergenic | 25.0% |
! | TAAAAGTTGTGCAATATAGT+TGG | + | chr5_1:17991695-17991714 | Msa0721420:intron | 25.0% |
! | CATTATATGCATGTAATTTC+AGG | - | chr5_1:17991833-17991852 | None:intergenic | 25.0% |
!!! | TTCAATGTCCTTTTTTTCTA+TGG | + | chr5_1:17991865-17991884 | Msa0721420:intron | 25.0% |
!! | AACTTGTTCCATAGAAAAAA+AGG | - | chr5_1:17991876-17991895 | None:intergenic | 25.0% |
! | GTTAACTAAGAGTCTTAATT+AGG | + | chr5_1:17991961-17991980 | Msa0721420:intron | 25.0% |
!!! | AAGTAATGGTGTTTTTGTTT+AGG | + | chr5_1:17992023-17992042 | Msa0721420:intron | 25.0% |
! | CAATCAAGTCATATTAATCT+TGG | - | chr5_1:17992061-17992080 | None:intergenic | 25.0% |
!!! | TTATTTTTGCTCATATACCT+GGG | - | chr5_1:17992156-17992175 | None:intergenic | 25.0% |
!!! | ATTATTTTTGCTCATATACC+TGG | - | chr5_1:17992157-17992176 | None:intergenic | 25.0% |
! | AGATAACAATTGTAGAAACA+TGG | + | chr5_1:17992251-17992270 | Msa0721420:intron | 25.0% |
!!! | AATTATCTGTTTTTGTCAGA+TGG | + | chr5_1:17992343-17992362 | Msa0721420:intron | 25.0% |
!!! | ATTATCTGTTTTTGTCAGAT+GGG | + | chr5_1:17992344-17992363 | Msa0721420:intron | 25.0% |
! | TTGTAAAGTACAACAGAATT+GGG | - | chr5_1:17992544-17992563 | None:intergenic | 25.0% |
! | ATTGTAAAGTACAACAGAAT+TGG | - | chr5_1:17992545-17992564 | None:intergenic | 25.0% |
!! | ATATTTTTCCCAATGACAAA+TGG | + | chr5_1:17993118-17993137 | Msa0721420:intron | 25.0% |
CAAAAATCCATTGTTGAGTT+AGG | + | chr5_1:17988092-17988111 | Msa0721420:five_prime_UTR | 30.0% | |
ATAACGAATGTGACATGAAT+TGG | - | chr5_1:17988210-17988229 | None:intergenic | 30.0% | |
! | GTTGATGAAATTGTTCCATT+TGG | + | chr5_1:17988294-17988313 | Msa0721420:intron | 30.0% |
TTGTTGAATAACTGTTGTAG+TGG | - | chr5_1:17988467-17988486 | None:intergenic | 30.0% | |
ACTTTGTCAATCTTTCAACT+CGG | - | chr5_1:17988725-17988744 | None:intergenic | 30.0% | |
ATTCAATGCATATCCAGTTT+CGG | + | chr5_1:17989039-17989058 | Msa0721420:CDS | 30.0% | |
!! | TTTTAAGAACATACCGAAAC+TGG | - | chr5_1:17989055-17989074 | None:intergenic | 30.0% |
ATGTGCAGCTGATATAATAT+TGG | + | chr5_1:17989369-17989388 | Msa0721420:intron | 30.0% | |
TGTGCAGCTGATATAATATT+GGG | + | chr5_1:17989370-17989389 | Msa0721420:intron | 30.0% | |
CCTGACAATATTATAGATAC+TGG | - | chr5_1:17989529-17989548 | None:intergenic | 30.0% | |
CCAGTATCTATAATATTGTC+AGG | + | chr5_1:17989526-17989545 | Msa0721420:intron | 30.0% | |
CATTCAACCATCATTAAATC+AGG | - | chr5_1:17989580-17989599 | None:intergenic | 30.0% | |
! | TGCAAAAATGATAATGCCAA+CGG | - | chr5_1:17990024-17990043 | None:intergenic | 30.0% |
!! | GCATTATCATTTTTGCAGTA+TGG | + | chr5_1:17990027-17990046 | Msa0721420:CDS | 30.0% |
TGAAGTTACTATGTAATGAG+TGG | - | chr5_1:17990219-17990238 | None:intergenic | 30.0% | |
! | CTTTTGCCTATTGTTTATCA+AGG | + | chr5_1:17990480-17990499 | Msa0721420:CDS | 30.0% |
!! | TATTCTGAAGTTAAGGAAAC+AGG | - | chr5_1:17990510-17990529 | None:intergenic | 30.0% |
!! | GAACAGATATTCTGAAGTTA+AGG | - | chr5_1:17990517-17990536 | None:intergenic | 30.0% |
CCGAAATAGCTTAATTAACT+AGG | - | chr5_1:17990574-17990593 | None:intergenic | 30.0% | |
GCTACAATAATGATGTATCT+TGG | - | chr5_1:17990726-17990745 | None:intergenic | 30.0% | |
AAATTGGATCCAAAGATTTG+GGG | - | chr5_1:17990764-17990783 | None:intergenic | 30.0% | |
CAAATTGGATCCAAAGATTT+GGG | - | chr5_1:17990765-17990784 | None:intergenic | 30.0% | |
TTATGGAAGCAAAACAGAAT+AGG | - | chr5_1:17990793-17990812 | None:intergenic | 30.0% | |
! | AGCACACAACAATTAGTTTA+TGG | - | chr5_1:17990810-17990829 | None:intergenic | 30.0% |
! | GGTACCTTTTCTATATGTTA+AGG | + | chr5_1:17990906-17990925 | Msa0721420:intron | 30.0% |
GTTGCCTTAACATATAGAAA+AGG | - | chr5_1:17990913-17990932 | None:intergenic | 30.0% | |
AAGAGTAGTTAAAATGAGAG+AGG | + | chr5_1:17990969-17990988 | Msa0721420:intron | 30.0% | |
! | TAATGGACACAAGGAAAAAA+GGG | - | chr5_1:17991242-17991261 | None:intergenic | 30.0% |
! | TTAATGGACACAAGGAAAAA+AGG | - | chr5_1:17991243-17991262 | None:intergenic | 30.0% |
CGGATTATATGTACGATTAA+TGG | - | chr5_1:17991259-17991278 | None:intergenic | 30.0% | |
!! | TTCAATCACACATTTGTTGT+CGG | + | chr5_1:17991309-17991328 | Msa0721420:intron | 30.0% |
AATGCGAGGAAAAAAATCAT+AGG | + | chr5_1:17991509-17991528 | Msa0721420:intron | 30.0% | |
TAGTTAAAATGAGAGATGAG+AGG | - | chr5_1:17991623-17991642 | None:intergenic | 30.0% | |
!!! | TTTTGGCTTATAATTGAGAC+CGG | + | chr5_1:17991997-17992016 | Msa0721420:intron | 30.0% |
AAAAACACCATTACTTCATC+CGG | - | chr5_1:17992019-17992038 | None:intergenic | 30.0% | |
AATTGCTTGTTTATTAGCTG+TGG | + | chr5_1:17992283-17992302 | Msa0721420:intron | 30.0% | |
!!! | TGCTGCTTTTTCATTGTTTA+TGG | + | chr5_1:17992409-17992428 | Msa0721420:CDS | 30.0% |
TTCATTGTTTATGGAATTGC+TGG | + | chr5_1:17992418-17992437 | Msa0721420:CDS | 30.0% | |
TCATTGTTTATGGAATTGCT+GGG | + | chr5_1:17992419-17992438 | Msa0721420:CDS | 30.0% | |
AATAAGTTCCACAATATCAC+AGG | - | chr5_1:17992582-17992601 | None:intergenic | 30.0% | |
ATCCATTCATTTACCACAAA+AGG | - | chr5_1:17992673-17992692 | None:intergenic | 30.0% | |
TTCACTGTAAATTTGTGGTT+TGG | - | chr5_1:17992956-17992975 | None:intergenic | 30.0% | |
CAACATTCACTGTAAATTTG+TGG | - | chr5_1:17992961-17992980 | None:intergenic | 30.0% | |
AATTTACAGTGAATGTTGTG+CGG | + | chr5_1:17992963-17992982 | Msa0721420:CDS | 30.0% | |
GCATTAAACCATTTGTCATT+GGG | - | chr5_1:17993129-17993148 | None:intergenic | 30.0% | |
AGCATTAAACCATTTGTCAT+TGG | - | chr5_1:17993130-17993149 | None:intergenic | 30.0% | |
TTTGTGACCTAACTCAACAA+TGG | - | chr5_1:17988102-17988121 | None:intergenic | 35.0% | |
! | TTTTTCTTTGTCTTCATCGC+AGG | + | chr5_1:17988128-17988147 | Msa0721420:five_prime_UTR | 35.0% |
! | AACTAGCTCTTGAATCTTGA+TGG | - | chr5_1:17988599-17988618 | None:intergenic | 35.0% |
! | AGAGCTAGTTTCAGATATTC+CGG | + | chr5_1:17988609-17988628 | Msa0721420:intron | 35.0% |
TTTCAGATATTCCGGAGTTA+AGG | + | chr5_1:17988617-17988636 | Msa0721420:intron | 35.0% | |
! | ATGAAGCATCACAAAGGTTA+AGG | - | chr5_1:17988669-17988688 | None:intergenic | 35.0% |
! | AATCACATGAAGCATCACAA+AGG | - | chr5_1:17988675-17988694 | None:intergenic | 35.0% |
! | ATTAATATCAGTGTTGCTGC+AGG | + | chr5_1:17988696-17988715 | Msa0721420:intron | 35.0% |
ACAACAGTCTGTACTCTATA+GGG | - | chr5_1:17988766-17988785 | None:intergenic | 35.0% | |
ACATTAATAATGGCTCTTCC+TGG | + | chr5_1:17988835-17988854 | Msa0721420:exon | 35.0% | |
!! | CTGAATGTATTTCTAGTACC+CGG | - | chr5_1:17988918-17988937 | None:intergenic | 35.0% |
TACGTTCTTTGTTCAGGTAT+CGG | + | chr5_1:17988941-17988960 | Msa0721420:intron | 35.0% | |
!! | CTGTTGATTCAACGTGTAAT+TGG | + | chr5_1:17989101-17989120 | Msa0721420:intron | 35.0% |
! | AGTTTTCAGTGTTCAAAGTC+TGG | + | chr5_1:17989249-17989268 | Msa0721420:intron | 35.0% |
TGTTCAAAGTCTGGATTACT+TGG | + | chr5_1:17989258-17989277 | Msa0721420:intron | 35.0% | |
GCTGATATAATATTGGGTCT+TGG | + | chr5_1:17989376-17989395 | Msa0721420:intron | 35.0% | |
!! | TTATGCTAGTGATGGGTTAA+TGG | - | chr5_1:17989449-17989468 | None:intergenic | 35.0% |
AACACCTCCATCATATAAAC+AGG | + | chr5_1:17989748-17989767 | Msa0721420:CDS | 35.0% | |
TTGACCTGTTTATATGATGG+AGG | - | chr5_1:17989755-17989774 | None:intergenic | 35.0% | |
!!! | TGTCATTGTTTTTTAGTGCC+AGG | + | chr5_1:17989810-17989829 | Msa0721420:CDS | 35.0% |
ACTTAAATTTGTGCGCTTGA+TGG | - | chr5_1:17989908-17989927 | None:intergenic | 35.0% | |
GGAATCAACTTTACAATGAC+TGG | - | chr5_1:17989999-17990018 | None:intergenic | 35.0% | |
! | AAAAATGATAATGCCAACGG+CGG | - | chr5_1:17990021-17990040 | None:intergenic | 35.0% |
! | TCCTTGTCTGAAACATCAAT+GGG | - | chr5_1:17990061-17990080 | None:intergenic | 35.0% |
! | TTCCTTGTCTGAAACATCAA+TGG | - | chr5_1:17990062-17990081 | None:intergenic | 35.0% |
!!! | GACAAGGAAACTGTTTTTTC+AGG | + | chr5_1:17990073-17990092 | Msa0721420:CDS | 35.0% |
TGCAGAAGAGTGATAATAGT+TGG | + | chr5_1:17990183-17990202 | Msa0721420:intron | 35.0% | |
GTGAAACCTGCAAATAAGTA+CGG | - | chr5_1:17990273-17990292 | None:intergenic | 35.0% | |
! | TAAATCATTGTCGACTGTAG+TGG | + | chr5_1:17990457-17990476 | Msa0721420:CDS | 35.0% |
GGCATACCTTGATAAACAAT+AGG | - | chr5_1:17990489-17990508 | None:intergenic | 35.0% | |
TCATTATTGTAGCATGCTTG+AGG | + | chr5_1:17990733-17990752 | Msa0721420:intron | 35.0% | |
GCAAATTGGATCCAAAGATT+TGG | - | chr5_1:17990766-17990785 | None:intergenic | 35.0% | |
AACTACTCTTCTCACTTGAT+AGG | - | chr5_1:17990959-17990978 | None:intergenic | 35.0% | |
TAGTTAAAATGAGAGAGGAG+AGG | + | chr5_1:17990974-17990993 | Msa0721420:intron | 35.0% | |
AGTTAAAATGAGAGAGGAGA+GGG | + | chr5_1:17990975-17990994 | Msa0721420:intron | 35.0% | |
! | TGAAGATGGTAAATTTTGGG+CGG | - | chr5_1:17991066-17991085 | None:intergenic | 35.0% |
TTTACCATCTTCAGTAAGCA+AGG | + | chr5_1:17991073-17991092 | Msa0721420:intron | 35.0% | |
TTACCATCTTCAGTAAGCAA+GGG | + | chr5_1:17991074-17991093 | Msa0721420:intron | 35.0% | |
! | ATGTACGATTAATGGACACA+AGG | - | chr5_1:17991251-17991270 | None:intergenic | 35.0% |
TGTTCGTTAGTTGCAACAAA+GGG | - | chr5_1:17991337-17991356 | None:intergenic | 35.0% | |
! | AAGTTGTGACCTTTTCATCA+GGG | - | chr5_1:17991367-17991386 | None:intergenic | 35.0% |
! | AAAGTTGTGACCTTTTCATC+AGG | - | chr5_1:17991368-17991387 | None:intergenic | 35.0% |
TGATGAAAAGGTCACAACTT+TGG | + | chr5_1:17991367-17991386 | Msa0721420:intron | 35.0% | |
GATGAAAAGGTCACAACTTT+GGG | + | chr5_1:17991368-17991387 | Msa0721420:intron | 35.0% | |
ATGAAAAGGTCACAACTTTG+GGG | + | chr5_1:17991369-17991388 | Msa0721420:intron | 35.0% | |
GCAATCAAGTCATATGATCT+TGG | + | chr5_1:17991441-17991460 | Msa0721420:intron | 35.0% | |
TCAAGTCATATGATCTTGGT+TGG | + | chr5_1:17991445-17991464 | Msa0721420:intron | 35.0% | |
CAAGTCATATGATCTTGGTT+GGG | + | chr5_1:17991446-17991465 | Msa0721420:intron | 35.0% | |
AGGAATGATGTCATTGAACA+TGG | - | chr5_1:17991813-17991832 | None:intergenic | 35.0% | |
TTCTATGGAACAAGTTCTCA+TGG | + | chr5_1:17991880-17991899 | Msa0721420:intron | 35.0% | |
GTCTTAATTAGGGTGACTTT+AGG | + | chr5_1:17991972-17991991 | Msa0721420:intron | 35.0% | |
! | TAGGGTGACTTTAGGTATTT+TGG | + | chr5_1:17991980-17991999 | Msa0721420:intron | 35.0% |
TATAATATATGACAGCTCCC+AGG | + | chr5_1:17992136-17992155 | Msa0721420:intron | 35.0% | |
GATGCATTATAGAAGACTAG+TGG | + | chr5_1:17992206-17992225 | Msa0721420:intron | 35.0% | |
TGGTTCAATTTCATACGTCT+TGG | + | chr5_1:17992303-17992322 | Msa0721420:intron | 35.0% | |
AAGCTGTTTATTCTGCAGTA+TGG | + | chr5_1:17992384-17992403 | Msa0721420:CDS | 35.0% | |
! | GACCTTTTGTGGTAAATGAA+TGG | + | chr5_1:17992668-17992687 | Msa0721420:CDS | 35.0% |
TGGATTCAAACGAAGATTGA+AGG | + | chr5_1:17992688-17992707 | Msa0721420:CDS | 35.0% | |
AACGAAGATTGAAGGATATG+AGG | + | chr5_1:17992696-17992715 | Msa0721420:CDS | 35.0% | |
!!! | GATTTTGAGTTCTCTCAGTA+AGG | + | chr5_1:17992849-17992868 | Msa0721420:intron | 35.0% |
TCTTCACCTCGTATAATTGT+TGG | - | chr5_1:17992914-17992933 | None:intergenic | 35.0% | |
ACCTCACTCAAAAAACACAT+TGG | + | chr5_1:17992987-17993006 | Msa0721420:CDS | 35.0% | |
!!! | TCCAATGTGTTTTTTGAGTG+AGG | - | chr5_1:17992991-17993010 | None:intergenic | 35.0% |
TAAATGACTAATGGCTAGGT+GGG | - | chr5_1:17993023-17993042 | None:intergenic | 35.0% | |
CATCTAAATGACTAATGGCT+AGG | - | chr5_1:17993027-17993046 | None:intergenic | 35.0% | |
CAACATAAACCCTGAAAATC+AGG | + | chr5_1:17993240-17993259 | Msa0721420:CDS | 35.0% | |
ATGATTCCGTGCTAAATTAC+AGG | + | chr5_1:17993305-17993324 | Msa0721420:CDS | 35.0% | |
TGATTCCGTGCTAAATTACA+GGG | + | chr5_1:17993306-17993325 | Msa0721420:CDS | 35.0% | |
ACACGTGGAAATCAAATCCA+TGG | + | chr5_1:17987903-17987922 | Msa0721420:five_prime_UTR | 40.0% | |
AATCAAATCCATGGCTGACA+CGG | + | chr5_1:17987912-17987931 | Msa0721420:five_prime_UTR | 40.0% | |
CACGGCAAGATTGAAAATTC+TGG | + | chr5_1:17987930-17987949 | Msa0721420:five_prime_UTR | 40.0% | |
AGAATTTCGACACTTTCGGT+TGG | + | chr5_1:17987956-17987975 | Msa0721420:five_prime_UTR | 40.0% | |
GAATTTCGACACTTTCGGTT+GGG | + | chr5_1:17987957-17987976 | Msa0721420:five_prime_UTR | 40.0% | |
TTTGTCTATCTGCTTCTACG+AGG | - | chr5_1:17988076-17988095 | None:intergenic | 40.0% | |
TAACTGTTGTAGTGGCATAG+CGG | - | chr5_1:17988459-17988478 | None:intergenic | 40.0% | |
AGCTCTTGAATCTTGATGGA+AGG | - | chr5_1:17988595-17988614 | None:intergenic | 40.0% | |
ACTTCACTAAGCCTTAACTC+CGG | - | chr5_1:17988631-17988650 | None:intergenic | 40.0% | |
CACAACAGTCTGTACTCTAT+AGG | - | chr5_1:17988767-17988786 | None:intergenic | 40.0% | |
ACCTCAACAGCAATAAAGAC+CGG | + | chr5_1:17988896-17988915 | Msa0721420:CDS | 40.0% | |
CAGTTCTACGTTCTTTGTTC+AGG | + | chr5_1:17988935-17988954 | Msa0721420:intron | 40.0% | |
ACATACTACCCTTTGCTGAT+GGG | - | chr5_1:17989353-17989372 | None:intergenic | 40.0% | |
TCCTGTTTAGCGCAATTGTT+GGG | - | chr5_1:17989417-17989436 | None:intergenic | 40.0% | |
TTCCTGTTTAGCGCAATTGT+TGG | - | chr5_1:17989418-17989437 | None:intergenic | 40.0% | |
!! | GTGATGGGTTAATGGATCTT+GGG | - | chr5_1:17989441-17989460 | None:intergenic | 40.0% |
!! | AGTGATGGGTTAATGGATCT+TGG | - | chr5_1:17989442-17989461 | None:intergenic | 40.0% |
!! | ATACTGGAAGAGTGCTGAAT+GGG | - | chr5_1:17989513-17989532 | None:intergenic | 40.0% |
AGTTCATGAAACAGGACTAC+AGG | + | chr5_1:17989718-17989737 | Msa0721420:intron | 40.0% | |
GTTCATGAAACAGGACTACA+GGG | + | chr5_1:17989719-17989738 | Msa0721420:intron | 40.0% | |
TTCATGAAACAGGACTACAG+GGG | + | chr5_1:17989720-17989739 | Msa0721420:CDS | 40.0% | |
! | GCGTTGACCTGTTTATATGA+TGG | - | chr5_1:17989758-17989777 | None:intergenic | 40.0% |
AATTGCGCTTCCTTCTGTTA+AGG | + | chr5_1:17989839-17989858 | Msa0721420:CDS | 40.0% | |
! | GCACTAACATACTTTTCTGC+AGG | + | chr5_1:17989949-17989968 | Msa0721420:intron | 40.0% |
! | AAAATGATAATGCCAACGGC+GGG | - | chr5_1:17990020-17990039 | None:intergenic | 40.0% |
! | ATTTTTGCAGTATGGGGTGT+TGG | + | chr5_1:17990035-17990054 | Msa0721420:CDS | 40.0% |
GCTTCTGTAGGTAGAATTAC+TGG | - | chr5_1:17990401-17990420 | None:intergenic | 40.0% | |
GGATAAGGCTTCTCATGAAA+GGG | - | chr5_1:17990608-17990627 | None:intergenic | 40.0% | |
! | ACAGAATAGGCACTGCAAAT+TGG | - | chr5_1:17990780-17990799 | None:intergenic | 40.0% |
GTTAAAATGAGAGAGGAGAG+GGG | + | chr5_1:17990976-17990995 | Msa0721420:intron | 40.0% | |
AGTCAAATGGAGAAAGGACT+AGG | - | chr5_1:17991125-17991144 | None:intergenic | 40.0% | |
TTCGTTAGTTGCAACAAAGG+GGG | - | chr5_1:17991335-17991354 | None:intergenic | 40.0% | |
GTTCGTTAGTTGCAACAAAG+GGG | - | chr5_1:17991336-17991355 | None:intergenic | 40.0% | |
GTGTTCGTTAGTTGCAACAA+AGG | - | chr5_1:17991338-17991357 | None:intergenic | 40.0% | |
! | AGTTGTGACCTTTTCATCAG+GGG | - | chr5_1:17991366-17991385 | None:intergenic | 40.0% |
TGAAAAGGTCACAACTTTGG+GGG | + | chr5_1:17991370-17991389 | Msa0721420:intron | 40.0% | |
! | CAACTTTGGGGGAATAAACA+TGG | + | chr5_1:17991381-17991400 | Msa0721420:intron | 40.0% |
TCATATGATCTTGGTTGGGT+TGG | + | chr5_1:17991450-17991469 | Msa0721420:intron | 40.0% | |
GCGAGGAAAAAAATCATAGG+CGG | + | chr5_1:17991512-17991531 | Msa0721420:intron | 40.0% | |
TATGGAACAAGTTCTCATGG+AGG | + | chr5_1:17991883-17991902 | Msa0721420:intron | 40.0% | |
ATGGAACAAGTTCTCATGGA+GGG | + | chr5_1:17991884-17991903 | Msa0721420:intron | 40.0% | |
ATTGAGACCGGATGAAGTAA+TGG | + | chr5_1:17992009-17992028 | Msa0721420:intron | 40.0% | |
! | GAGAGAAAAGCATGTAGAAC+TGG | + | chr5_1:17992102-17992121 | Msa0721420:intron | 40.0% |
AAACAGCTTTGCCTGCAAAT+TGG | - | chr5_1:17992373-17992392 | None:intergenic | 40.0% | |
!!! | ACAGTTTTGTTGACTCTTGC+TGG | + | chr5_1:17992482-17992501 | Msa0721420:CDS | 40.0% |
CGTAGTTACCTGTGATATTG+TGG | + | chr5_1:17992571-17992590 | Msa0721420:intron | 40.0% | |
CATGAATCATTGCGCTTGAA+AGG | - | chr5_1:17992642-17992661 | None:intergenic | 40.0% | |
! | ATTGAAGGATATGAGGTGTC+TGG | + | chr5_1:17992703-17992722 | Msa0721420:CDS | 40.0% |
TGGTCACCAACAATTATACG+AGG | + | chr5_1:17992905-17992924 | Msa0721420:CDS | 40.0% | |
CTAAATGACTAATGGCTAGG+TGG | - | chr5_1:17993024-17993043 | None:intergenic | 40.0% | |
AGAACATTGTTGCTGACATG+CGG | + | chr5_1:17993155-17993174 | Msa0721420:intron | 40.0% | |
! | CTGCTCAACTTGAGGATTTT+TGG | - | chr5_1:17993191-17993210 | None:intergenic | 40.0% |
CGCTTATGGTATGTATGAAC+TGG | + | chr5_1:17993263-17993282 | Msa0721420:CDS | 40.0% | |
GATTCCGTGCTAAATTACAG+GGG | + | chr5_1:17993307-17993326 | Msa0721420:CDS | 40.0% | |
AAGACCCCTGTAATTTAGCA+CGG | - | chr5_1:17993314-17993333 | None:intergenic | 40.0% | |
GCGCAGAATTTCGACACTTT+CGG | + | chr5_1:17987952-17987971 | Msa0721420:five_prime_UTR | 45.0% | |
! | GTTAAAGCGCTATAGCGTAG+CGG | - | chr5_1:17988524-17988543 | None:intergenic | 45.0% |
CCTCAACAGCAATAAAGACC+GGG | + | chr5_1:17988897-17988916 | Msa0721420:CDS | 45.0% | |
! | TACCACTTCATGGTTTGCAG+AGG | + | chr5_1:17988990-17989009 | Msa0721420:intron | 45.0% |
! | ACCACTTCATGGTTTGCAGA+GGG | + | chr5_1:17988991-17989010 | Msa0721420:intron | 45.0% |
TGTGCCAGCGTTGTTGTAAA+CGG | + | chr5_1:17989124-17989143 | Msa0721420:intron | 45.0% | |
CACATACTACCCTTTGCTGA+TGG | - | chr5_1:17989354-17989373 | None:intergenic | 45.0% | |
!! | GATACTGGAAGAGTGCTGAA+TGG | - | chr5_1:17989514-17989533 | None:intergenic | 45.0% |
TCCACTGCAGTTCATGAAAC+AGG | + | chr5_1:17989710-17989729 | Msa0721420:intron | 45.0% | |
TCCTGTTTCATGAACTGCAG+TGG | - | chr5_1:17989714-17989733 | None:intergenic | 45.0% | |
GTAGTAGCCACCTTAACAGA+AGG | - | chr5_1:17989852-17989871 | None:intergenic | 45.0% | |
!! | TGGCTACTACAGTACTGACA+AGG | + | chr5_1:17989862-17989881 | Msa0721420:CDS | 45.0% |
GCCCATTGATGTTTCAGACA+AGG | + | chr5_1:17990057-17990076 | Msa0721420:CDS | 45.0% | |
AAAGTCGTTCCTTAACAGCC+TGG | - | chr5_1:17990427-17990446 | None:intergenic | 45.0% | |
CGGATAAGGCTTCTCATGAA+AGG | - | chr5_1:17990609-17990628 | None:intergenic | 45.0% | |
GAGGACTTTCCCCAAATCTT+TGG | + | chr5_1:17990752-17990771 | Msa0721420:intron | 45.0% | |
GCAAGCGAGACAAGAAATGT+TGG | + | chr5_1:17990885-17990904 | Msa0721420:intron | 45.0% | |
! | AGCAGAAACTGAAGAAGCGT+AGG | - | chr5_1:17991023-17991042 | None:intergenic | 45.0% |
GTTCCCTTGCTTACTGAAGA+TGG | - | chr5_1:17991080-17991099 | None:intergenic | 45.0% | |
CACAATTCCCCCTGATGAAA+AGG | + | chr5_1:17991355-17991374 | Msa0721420:intron | 45.0% | |
! | GTTGTGACCTTTTCATCAGG+GGG | - | chr5_1:17991365-17991384 | None:intergenic | 45.0% |
ATTGAAGGGAAGAGAATGCG+AGG | + | chr5_1:17991495-17991514 | Msa0721420:intron | 45.0% | |
ACCCATCTATATACTTCGCC+CGG | + | chr5_1:17991720-17991739 | Msa0721420:intron | 45.0% | |
ACCGGGCGAAGTATATAGAT+GGG | - | chr5_1:17991724-17991743 | None:intergenic | 45.0% | |
TACCGGGCGAAGTATATAGA+TGG | - | chr5_1:17991725-17991744 | None:intergenic | 45.0% | |
CAGATGGGATTCCAATTTGC+AGG | + | chr5_1:17992359-17992378 | Msa0721420:intron | 45.0% | |
! | TGGGCTTTTCTACCCAGAAA+TGG | + | chr5_1:17992438-17992457 | Msa0721420:CDS | 45.0% |
! | GGGCTTTTCTACCCAGAAAT+GGG | + | chr5_1:17992439-17992458 | Msa0721420:CDS | 45.0% |
! | TCATGCAACTCGACCTTTTG+TGG | + | chr5_1:17992657-17992676 | Msa0721420:CDS | 45.0% |
TTTCCTGCTATGCAGCATGT+TGG | + | chr5_1:17992878-17992897 | Msa0721420:intron | 45.0% | |
! | TGCTGACATGCGGAAAGTAT+TGG | + | chr5_1:17993165-17993184 | Msa0721420:CDS | 45.0% |
!!! | GTTGCACAGGAGAGTGTTTT+TGG | + | chr5_1:17993216-17993235 | Msa0721420:CDS | 45.0% |
! | CCATAAGCGCCTGATTTTCA+GGG | - | chr5_1:17993252-17993271 | None:intergenic | 45.0% |
! | ACCATAAGCGCCTGATTTTC+AGG | - | chr5_1:17993253-17993272 | None:intergenic | 45.0% |
!! | AATAAAATTATTGAAAAATT+GGG | - | chr5_1:17988179-17988198 | None:intergenic | 5.0% |
GTTCCCTGCAACTGTCTCAT+GGG | + | chr5_1:17988857-17988876 | Msa0721420:CDS | 50.0% | |
! | CCCGGTCTTTATTGCTGTTG+AGG | - | chr5_1:17988900-17988919 | None:intergenic | 50.0% |
! | CCACTTCATGGTTTGCAGAG+GGG | + | chr5_1:17988992-17989011 | Msa0721420:intron | 50.0% |
! | TCATGGTTTGCAGAGGGGAA+AGG | + | chr5_1:17988997-17989016 | Msa0721420:intron | 50.0% |
! | CATGGTTTGCAGAGGGGAAA+GGG | + | chr5_1:17988998-17989017 | Msa0721420:intron | 50.0% |
! | ATGGTTTGCAGAGGGGAAAG+GGG | + | chr5_1:17988999-17989018 | Msa0721420:intron | 50.0% |
GCAACCGTTTACAACAACGC+TGG | - | chr5_1:17989131-17989150 | None:intergenic | 50.0% | |
CGTTGTTGTAAACGGTTGCC+TGG | + | chr5_1:17989132-17989151 | Msa0721420:intron | 50.0% | |
! | AAAGGGCATAGTTGCATGCC+AGG | - | chr5_1:17989153-17989172 | None:intergenic | 50.0% |
TTTGCCACACCCATCAGCAA+AGG | + | chr5_1:17989341-17989360 | Msa0721420:intron | 50.0% | |
TTGCCACACCCATCAGCAAA+GGG | + | chr5_1:17989342-17989361 | Msa0721420:intron | 50.0% | |
TATTGGGTCTTGGTCCTACG+TGG | + | chr5_1:17989386-17989405 | Msa0721420:intron | 50.0% | |
ATTGTTGGGCGTAACCACGT+AGG | - | chr5_1:17989403-17989422 | None:intergenic | 50.0% | |
GCCCAACAATTGCGCTAAAC+AGG | + | chr5_1:17989413-17989432 | Msa0721420:intron | 50.0% | |
TGCGCTTCCTTCTGTTAAGG+TGG | + | chr5_1:17989842-17989861 | Msa0721420:CDS | 50.0% | |
! | GTAAAGTTGATTCCCGCCGT+TGG | + | chr5_1:17990005-17990024 | Msa0721420:CDS | 50.0% |
ACCTTCGACCACTACTGTTG+TGG | + | chr5_1:17990240-17990259 | Msa0721420:CDS | 50.0% | |
TCCACAACAGTAGTGGTCGA+AGG | - | chr5_1:17990244-17990263 | None:intergenic | 50.0% | |
CTGGAGCCGTACTTATTTGC+AGG | + | chr5_1:17990264-17990283 | Msa0721420:CDS | 50.0% | |
TCTACCTACAGAAGCTAGCC+AGG | + | chr5_1:17990406-17990425 | Msa0721420:CDS | 50.0% | |
AGAAGCTAGCCAGGCTGTTA+AGG | + | chr5_1:17990415-17990434 | Msa0721420:CDS | 50.0% | |
! | AATTTTGGGCGGTGATGTGC+AGG | - | chr5_1:17991055-17991074 | None:intergenic | 50.0% |
TCCTGCTGTGACCCATTTCT+GGG | - | chr5_1:17992453-17992472 | None:intergenic | 50.0% | |
!! | ATCCTCAAGTTGAGCAGCAG+AGG | + | chr5_1:17993194-17993213 | Msa0721420:CDS | 50.0% |
AACCTCTGCTGCTCAACTTG+AGG | - | chr5_1:17993199-17993218 | None:intergenic | 50.0% | |
CCCTGAAAATCAGGCGCTTA+TGG | + | chr5_1:17993249-17993268 | Msa0721420:CDS | 50.0% | |
CAATCTTGCCGTGTCAGCCA+TGG | - | chr5_1:17987923-17987942 | None:intergenic | 55.0% | |
TGAGACAGTTGCAGGGAACC+AGG | - | chr5_1:17988856-17988875 | None:intergenic | 55.0% | |
GGTTCCCTGCAACTGTCTCA+TGG | + | chr5_1:17988856-17988875 | Msa0721420:CDS | 55.0% | |
CAGCCCATGAGACAGTTGCA+GGG | - | chr5_1:17988863-17988882 | None:intergenic | 55.0% | |
CTGCAACTGTCTCATGGGCT+GGG | + | chr5_1:17988862-17988881 | Msa0721420:CDS | 55.0% | |
CCCCTCTGCAAACCATGAAG+TGG | - | chr5_1:17988995-17989014 | None:intergenic | 55.0% | |
! | CTACCCTTTGCTGATGGGTG+TGG | - | chr5_1:17989348-17989367 | None:intergenic | 55.0% |
CGACCACTACTGTTGTGGAC+TGG | + | chr5_1:17990245-17990264 | Msa0721420:CDS | 55.0% | |
GCTCCAGTCCACAACAGTAG+TGG | - | chr5_1:17990251-17990270 | None:intergenic | 55.0% | |
!! | ACAGCCTGGCTAGCTTCTGT+AGG | - | chr5_1:17990413-17990432 | None:intergenic | 55.0% |
! | ACTGAAGAAGCGTAGGCGTG+TGG | - | chr5_1:17991016-17991035 | None:intergenic | 55.0% |
AATCCGATCCTACCCCACTG+TGG | + | chr5_1:17991273-17991292 | Msa0721420:intron | 55.0% | |
CGGCGAGAGAGAGATCAGAA+GGG | + | chr5_1:17991532-17991551 | Msa0721420:intron | 55.0% | |
GGCGAGAGAGAGATCAGAAG+GGG | + | chr5_1:17991533-17991552 | Msa0721420:intron | 55.0% | |
GCGAGAGAGAGATCAGAAGG+GGG | + | chr5_1:17991534-17991553 | Msa0721420:intron | 55.0% | |
ACCCAGAAATGGGTCACAGC+AGG | + | chr5_1:17992449-17992468 | Msa0721420:CDS | 55.0% | |
CTCCTGCTGTGACCCATTTC+TGG | - | chr5_1:17992454-17992473 | None:intergenic | 55.0% | |
CAGAAATGGGTCACAGCAGG+AGG | + | chr5_1:17992452-17992471 | Msa0721420:CDS | 55.0% | |
! | TGGGTCACAGCAGGAGGTTT+TGG | + | chr5_1:17992458-17992477 | Msa0721420:CDS | 55.0% |
! | GGGTCACAGCAGGAGGTTTT+GGG | + | chr5_1:17992459-17992478 | Msa0721420:CDS | 55.0% |
! | GTTGACTCTTGCTGGTCGTG+AGG | + | chr5_1:17992490-17992509 | Msa0721420:CDS | 55.0% |
! | TGAGGTGTCTGGCACTGTTG+AGG | + | chr5_1:17992714-17992733 | Msa0721420:CDS | 55.0% |
CAGCCAACATGCTGCATAGC+AGG | - | chr5_1:17992884-17992903 | None:intergenic | 55.0% | |
CTGCTATGCAGCATGTTGGC+TGG | + | chr5_1:17992882-17992901 | Msa0721420:intron | 55.0% | |
! | CTATGCAGCATGTTGGCTGG+TGG | + | chr5_1:17992885-17992904 | Msa0721420:intron | 55.0% |
TTGAGCAGCAGAGGTTGCAC+AGG | + | chr5_1:17993203-17993222 | Msa0721420:CDS | 55.0% | |
CCAGCCCATGAGACAGTTGC+AGG | - | chr5_1:17988864-17988883 | None:intergenic | 60.0% | |
CCTGCAACTGTCTCATGGGC+TGG | + | chr5_1:17988861-17988880 | Msa0721420:CDS | 60.0% | |
!! | CTCATGGGCTGGGACTTTGC+AGG | + | chr5_1:17988872-17988891 | Msa0721420:CDS | 60.0% |
! | GGAAGCGCAATTCGTTCGCC+TGG | - | chr5_1:17989831-17989850 | None:intergenic | 60.0% |
CCACCACAGTGGGGTAGGAT+CGG | - | chr5_1:17991279-17991298 | None:intergenic | 60.0% | |
ACGACCAAGCCACCACAGTG+GGG | - | chr5_1:17991288-17991307 | None:intergenic | 60.0% | |
CACGACCAAGCCACCACAGT+GGG | - | chr5_1:17991289-17991308 | None:intergenic | 60.0% | |
ACACGACCAAGCCACCACAG+TGG | - | chr5_1:17991290-17991309 | None:intergenic | 60.0% | |
GCGGCGAGAGAGAGATCAGA+AGG | + | chr5_1:17991531-17991550 | Msa0721420:intron | 60.0% | |
CCGATCCTACCCCACTGTGG+TGG | + | chr5_1:17991276-17991295 | Msa0721420:intron | 65.0% | |
CCAAGCCACCACAGTGGGGT+AGG | - | chr5_1:17991284-17991303 | None:intergenic | 65.0% | |
CCTACCCCACTGTGGTGGCT+TGG | + | chr5_1:17991281-17991300 | Msa0721420:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_1 | gene | 17987894 | 17993376 | 17987894 | ID=Msa0721420;Name=Msa0721420 |
chr5_1 | mRNA | 17987894 | 17993376 | 17987894 | ID=Msa0721420-mRNA-1;Parent=Msa0721420;Name=Msa0721420-mRNA-1;_AED=0.12;_eAED=0.12;_QI=382|1|1|1|0.72|0.58|12|37|432 |
chr5_1 | exon | 17987894 | 17988149 | 17987894 | ID=Msa0721420-mRNA-1:exon:6859;Parent=Msa0721420-mRNA-1 |
chr5_1 | exon | 17988718 | 17988918 | 17988718 | ID=Msa0721420-mRNA-1:exon:6860;Parent=Msa0721420-mRNA-1 |
chr5_1 | exon | 17989010 | 17989060 | 17989010 | ID=Msa0721420-mRNA-1:exon:6861;Parent=Msa0721420-mRNA-1 |
chr5_1 | exon | 17989720 | 17989883 | 17989720 | ID=Msa0721420-mRNA-1:exon:6862;Parent=Msa0721420-mRNA-1 |
chr5_1 | exon | 17989971 | 17990094 | 17989971 | ID=Msa0721420-mRNA-1:exon:6863;Parent=Msa0721420-mRNA-1 |
chr5_1 | exon | 17990188 | 17990285 | 17990188 | ID=Msa0721420-mRNA-1:exon:6864;Parent=Msa0721420-mRNA-1 |
chr5_1 | exon | 17990388 | 17990501 | 17990388 | ID=Msa0721420-mRNA-1:exon:6865;Parent=Msa0721420-mRNA-1 |
chr5_1 | exon | 17990842 | 17990902 | 17990842 | ID=Msa0721420-mRNA-1:exon:6866;Parent=Msa0721420-mRNA-1 |
chr5_1 | exon | 17992362 | 17992511 | 17992362 | ID=Msa0721420-mRNA-1:exon:6867;Parent=Msa0721420-mRNA-1 |
chr5_1 | exon | 17992625 | 17992735 | 17992625 | ID=Msa0721420-mRNA-1:exon:6868;Parent=Msa0721420-mRNA-1 |
chr5_1 | exon | 17992893 | 17993060 | 17992893 | ID=Msa0721420-mRNA-1:exon:6869;Parent=Msa0721420-mRNA-1 |
chr5_1 | exon | 17993157 | 17993376 | 17993157 | ID=Msa0721420-mRNA-1:exon:6870;Parent=Msa0721420-mRNA-1 |
chr5_1 | five_prime_UTR | 17987894 | 17988149 | 17987894 | ID=Msa0721420-mRNA-1:five_prime_utr;Parent=Msa0721420-mRNA-1 |
chr5_1 | five_prime_UTR | 17988718 | 17988843 | 17988718 | ID=Msa0721420-mRNA-1:five_prime_utr;Parent=Msa0721420-mRNA-1 |
chr5_1 | CDS | 17988844 | 17988918 | 17988844 | ID=Msa0721420-mRNA-1:cds;Parent=Msa0721420-mRNA-1 |
chr5_1 | CDS | 17989010 | 17989060 | 17989010 | ID=Msa0721420-mRNA-1:cds;Parent=Msa0721420-mRNA-1 |
chr5_1 | CDS | 17989720 | 17989883 | 17989720 | ID=Msa0721420-mRNA-1:cds;Parent=Msa0721420-mRNA-1 |
chr5_1 | CDS | 17989971 | 17990094 | 17989971 | ID=Msa0721420-mRNA-1:cds;Parent=Msa0721420-mRNA-1 |
chr5_1 | CDS | 17990188 | 17990285 | 17990188 | ID=Msa0721420-mRNA-1:cds;Parent=Msa0721420-mRNA-1 |
chr5_1 | CDS | 17990388 | 17990501 | 17990388 | ID=Msa0721420-mRNA-1:cds;Parent=Msa0721420-mRNA-1 |
chr5_1 | CDS | 17990842 | 17990902 | 17990842 | ID=Msa0721420-mRNA-1:cds;Parent=Msa0721420-mRNA-1 |
chr5_1 | CDS | 17992362 | 17992511 | 17992362 | ID=Msa0721420-mRNA-1:cds;Parent=Msa0721420-mRNA-1 |
chr5_1 | CDS | 17992625 | 17992735 | 17992625 | ID=Msa0721420-mRNA-1:cds;Parent=Msa0721420-mRNA-1 |
chr5_1 | CDS | 17992893 | 17993060 | 17992893 | ID=Msa0721420-mRNA-1:cds;Parent=Msa0721420-mRNA-1 |
chr5_1 | CDS | 17993157 | 17993339 | 17993157 | ID=Msa0721420-mRNA-1:cds;Parent=Msa0721420-mRNA-1 |
chr5_1 | three_prime_UTR | 17993340 | 17993376 | 17993340 | ID=Msa0721420-mRNA-1:three_prime_utr;Parent=Msa0721420-mRNA-1 |
Gene Sequence |
Protein sequence |