AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0619480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0619480 MtrunA17_Chr8g0384911 98.344 604 10 0 5 608 139 742 0.0 1229
Msa0619480 MtrunA17_Chr8g0384911 33.537 164 95 6 223 375 107 267 4.88e-14 75.5
Msa0619480 MtrunA17_Chr1g0193701 26.768 198 112 6 203 371 71 264 4.02e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0619480 AT5G08720.1 69.508 610 160 10 5 608 129 718 0.0 817
Msa0619480 AT5G08720.1 34.483 145 87 4 223 361 97 239 9.91e-14 75.1
Msa0619480 AT4G01650.2 32.934 167 88 6 223 367 38 202 1.08e-17 82.4
Msa0619480 AT4G01650.1 32.934 167 88 6 223 367 115 279 4.84e-17 82.4
Msa0619480 AT4G01650.3 36.449 107 59 3 223 320 115 221 2.78e-14 73.2

Find 204 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTACTGATTGCTAAATT+TGG 0.126575 4_2:-70581342 None:intergenic
CAGGAAATTGTGATGCTTTC+CGG 0.135896 4_2:-70582166 None:intergenic
AAAACTTCTTTGGTTGTTAA+TGG 0.150554 4_2:+70580781 Msa0619480:CDS
TAAAAGAGTTGGACATAAAT+TGG 0.162386 4_2:+70583190 Msa0619480:CDS
TCCTTTCACTTGGCGCATTT+TGG 0.166058 4_2:+70583485 Msa0619480:three_prime_UTR
AACAGCAATTGGGGTATATT+TGG 0.184340 4_2:+70580925 Msa0619480:CDS
AAGCTATGGTTAATCAATTA+TGG 0.203967 4_2:-70579717 None:intergenic
GCCAAAACAACTTATGAAAA+TGG 0.207859 4_2:+70579813 Msa0619480:five_prime_UTR
TAGGACTTCAGTTCAAATTA+AGG 0.215602 4_2:+70583530 Msa0619480:three_prime_UTR
CATTGAAGCTCGTGTTGTTT+TGG 0.228996 4_2:+70580111 Msa0619480:CDS
TATTCAAATTTCCACCTAAA+TGG 0.230001 4_2:-70579508 None:intergenic
TACTGATGCCATGTACTTAT+TGG 0.234172 4_2:+70583452 Msa0619480:three_prime_UTR
CATATTCAGCAACAAATTTC+AGG 0.244825 4_2:-70582364 None:intergenic
ATTTCCACCTAAATGGCTTC+TGG 0.245633 4_2:-70579501 None:intergenic
CGACTTGCATAAAACTTCTT+TGG 0.246522 4_2:+70580771 Msa0619480:CDS
AATTTCAGCTGTGGGATTAT+AGG 0.255058 4_2:-70583649 None:intergenic
CTGAAATTTGTTGCTGAATA+TGG 0.261458 4_2:+70582365 Msa0619480:CDS
TTAACCATAGCTTCATTATA+AGG 0.267969 4_2:+70579727 Msa0619480:five_prime_UTR
TAGAGTTGAAAGGAATCTTT+TGG 0.269880 4_2:+70580720 Msa0619480:CDS
GCCCATTTCCTGGAAGGATA+TGG 0.274340 4_2:+70580050 Msa0619480:CDS
TTAGGTGGAAATTTGAATAA+TGG 0.274468 4_2:+70579512 Msa0619480:five_prime_UTR
GTGAGCTTCAAGTGGTTTCT+TGG 0.276863 4_2:+70579576 Msa0619480:five_prime_UTR
TCGACTCATTCCATGGAAAA+TGG 0.279784 4_2:+70581725 Msa0619480:CDS
CTTCATTATAAGGGCATGTT+TGG 0.282710 4_2:+70579737 Msa0619480:five_prime_UTR
GGTTTGGACACTTCAATTTC+CGG 0.285305 4_2:+70580874 Msa0619480:CDS
TCTACTAGCATAAACTCTTT+AGG 0.285422 4_2:+70579783 Msa0619480:five_prime_UTR
AACCATATCCTTCCAGGAAA+TGG 0.286044 4_2:-70580052 None:intergenic
CCGCAGATTTGATGGACTTT+TGG 0.287220 4_2:+70580996 Msa0619480:CDS
AATCTTATCATATGACTCTT+TGG 0.292633 4_2:-70579959 None:intergenic
TTTATGTGAAACCGACAAAT+TGG 0.299097 4_2:+70580831 Msa0619480:CDS
CGTATTCCTTGCCCATTTCC+TGG 0.303078 4_2:+70580040 Msa0619480:CDS
TGCTCTAACCATATCCTTCC+AGG 0.304191 4_2:-70580058 None:intergenic
TTAAGAAGTTTGAGGGAAAA+TGG 0.304395 4_2:+70580456 Msa0619480:CDS
ACCGCAAACCAAAGGGTTAC+TGG 0.312478 4_2:+70582519 Msa0619480:CDS
AAATGATGGTTTGGAATATA+AGG 0.314737 4_2:-70579405 None:intergenic
TGTAAACCCAGAAGCCATTT+AGG 0.317387 4_2:+70579494 Msa0619480:five_prime_UTR
TAGGTGGAAATTTGAATAAT+GGG 0.318321 4_2:+70579513 Msa0619480:five_prime_UTR
CACCCTTCAATAGCAAAATA+TGG 0.319903 4_2:+70583402 Msa0619480:three_prime_UTR
TTGTTGTTGATGATGTTTCA+TGG 0.321467 4_2:-70579271 None:intergenic
ATTTCATACCAAATCTTGTT+TGG 0.323525 4_2:+70579687 Msa0619480:five_prime_UTR
GCCAAGGTTGTTGTCCTGTC+TGG 0.332172 4_2:-70583061 None:intergenic
CCAGTGAGTTAAACAGCAAT+TGG 0.332368 4_2:+70580914 Msa0619480:CDS
ATCAACTAATTTATCTTATG+AGG 0.337577 4_2:+70580606 Msa0619480:CDS
GTTCATCTCCGCAGATTTGA+TGG 0.338069 4_2:+70580988 Msa0619480:CDS
CAATAAAGTCCGCATTCTTC+AGG 0.340923 4_2:+70581380 Msa0619480:CDS
CTTATTGCACACAAGTTTGA+TGG 0.342584 4_2:-70582128 None:intergenic
GATTACCTCCAAACAAGATT+TGG 0.343316 4_2:-70579695 None:intergenic
TAATCAAAGGTCAAGAGTTC+CGG 0.348104 4_2:+70582304 Msa0619480:CDS
CCCAGTAACCCTTTGGTTTG+CGG 0.349921 4_2:-70582520 None:intergenic
TTTCCACCTAAATGGCTTCT+GGG 0.357536 4_2:-70579500 None:intergenic
AGCTAGAGAGAGGTTCATTA+TGG 0.363567 4_2:-70582489 None:intergenic
GTGTAAAGGCCTGCTTTATA+TGG 0.365800 4_2:+70581624 Msa0619480:CDS
TCCTTGCCTTGAGAGATAGA+AGG 0.366056 4_2:-70583029 None:intergenic
CTTTGATTTCGTATAGAACT+TGG 0.371993 4_2:-70579916 None:intergenic
TATGCAAGTCGTCTTCTGGC+TGG 0.376831 4_2:-70580759 None:intergenic
GGACAATCTTGAAAATTTGC+AGG 0.376858 4_2:+70582541 Msa0619480:CDS
AGGACTTCAGTTCAAATTAA+GGG 0.380996 4_2:+70583531 Msa0619480:three_prime_UTR
CTTTGATATTGCACGGGCGC+TGG 0.383854 4_2:+70582975 Msa0619480:CDS
GTATTCTGCTCACAAACTTC+AGG 0.385344 4_2:-70582185 None:intergenic
TAACCATAGCTTCATTATAA+GGG 0.389994 4_2:+70579728 Msa0619480:five_prime_UTR
GGAAAATGGTCTGTAAAATC+TGG 0.393706 4_2:+70580470 Msa0619480:CDS
CGACAAATTGGCACCTGGTC+AGG 0.397683 4_2:+70580843 Msa0619480:CDS
CAGTGAGTTAAACAGCAATT+GGG 0.406091 4_2:+70580915 Msa0619480:CDS
TGCCTATGAGGAAGCAGCTT+CGG 0.407535 4_2:+70582402 Msa0619480:CDS
ATCCTTTCCAAGAAAATAGC+TGG 0.407564 4_2:-70580655 None:intergenic
AAGGAAGAGCGTAGAGAAAG+TGG 0.411995 4_2:-70579386 None:intergenic
ATGCTGATATTAACTCCGTT+TGG 0.413462 4_2:+70579633 Msa0619480:five_prime_UTR
GTTCCTTTCTGAAGCTATCA+TGG 0.414791 4_2:+70581819 Msa0619480:CDS
ATGCAAGTCGTCTTCTGGCT+GGG 0.415764 4_2:-70580758 None:intergenic
AATCAAAGGTCAAGAGTTCC+GGG 0.421005 4_2:+70582305 Msa0619480:CDS
AAAAGAGTTGGACATAAATT+GGG 0.422170 4_2:+70583191 Msa0619480:CDS
GAACAACAAATTATATCATC+TGG 0.426503 4_2:+70582215 Msa0619480:CDS
TCGTTCAAATGACTTTCTAC+TGG 0.427969 4_2:-70582796 None:intergenic
TTAATTTGAACTGAAGTCCT+AGG 0.430865 4_2:-70583528 None:intergenic
TATCTACATCTGCTGATTCT+CGG 0.432007 4_2:-70583104 None:intergenic
GGAGACTTTAAGAAGTTTGA+GGG 0.435260 4_2:+70580449 Msa0619480:CDS
AAGCTCCTGTTCGTGATGTA+TGG 0.435936 4_2:+70581158 Msa0619480:CDS
TCAAGTGTTTATCATATAAG+TGG 0.440789 4_2:-70579870 None:intergenic
TAAGTAGATTTCAGAGATGC+TGG 0.441100 4_2:+70582751 Msa0619480:CDS
TTATAAGGGCATGTTTGGAT+TGG 0.446629 4_2:+70579742 Msa0619480:five_prime_UTR
AGAATGTGCTTACAGAATTG+AGG 0.448020 4_2:-70580147 None:intergenic
ACCATATCCTTCCAGGAAAT+GGG 0.452989 4_2:-70580051 None:intergenic
TTTCTACTGGGCATAAATGA+TGG 0.458102 4_2:-70582783 None:intergenic
CTTGGAAAGGATTGTCAGAT+CGG 0.461197 4_2:+70580666 Msa0619480:CDS
TAAGTACAACTATGTGTTGA+TGG 0.461654 4_2:+70583258 Msa0619480:three_prime_UTR
AGATTGTCCCAGTAACCCTT+TGG 0.463671 4_2:-70582527 None:intergenic
TGAGTGTGAGTGTGTGAAGA+AGG 0.463920 4_2:-70579304 None:intergenic
CCAATTGCTGTTTAACTCAC+TGG 0.464061 4_2:-70580914 None:intergenic
TGGTCAGGATAAAGAAGGTT+TGG 0.466478 4_2:+70580858 Msa0619480:CDS
GAGACAGACTATTTAATCCT+AGG 0.471771 4_2:+70583511 Msa0619480:three_prime_UTR
CTGACCAGGTGCCAATTTGT+CGG 0.477873 4_2:-70580842 None:intergenic
TTCTGAAGCTATCATGGAAG+AGG 0.480831 4_2:+70581825 Msa0619480:CDS
GATCTCAAAGGGCAATGTAT+TGG 0.481444 4_2:+70580086 Msa0619480:CDS
TGGAGACTTTAAGAAGTTTG+AGG 0.481726 4_2:+70580448 Msa0619480:CDS
TTGCACGGGCGCTGGAAAAG+TGG 0.485341 4_2:+70582983 Msa0619480:CDS
TGCACGGGCGCTGGAAAAGT+GGG 0.485874 4_2:+70582984 Msa0619480:CDS
TTGGAGGGAACGGAGAGTTA+AGG 0.486180 4_2:+70579595 Msa0619480:five_prime_UTR
AGCCGAAGCTGCTTCCTCAT+AGG 0.486988 4_2:-70582404 None:intergenic
TACAAATACCGCAAACCAAA+GGG 0.487175 4_2:+70582512 Msa0619480:CDS
GGAAGACGCAGGCAATGAAC+CGG 0.492642 4_2:-70580893 None:intergenic
TAAGAGACTACGTTGAGAAC+CGG 0.494267 4_2:+70582147 Msa0619480:CDS
CCGCAAACCAAAGGGTTACT+GGG 0.494866 4_2:+70582520 Msa0619480:CDS
ACATTCCATACATCACGAAC+AGG 0.495980 4_2:-70581163 None:intergenic
TGCAAGTCGTCTTCTGGCTG+GGG 0.496780 4_2:-70580757 None:intergenic
TCCAAAATGCGCCAAGTGAA+AGG 0.498924 4_2:-70583486 None:intergenic
ATATAAATATATTTATACAT+TGG 0.500183 4_2:+70583233 Msa0619480:three_prime_UTR
CAGGCCGCTTTGATATTGCA+CGG 0.501731 4_2:+70582968 Msa0619480:intron
CAAATTATATCATCTGGCTC+TGG 0.502999 4_2:+70582221 Msa0619480:CDS
TTCCTTGCCCATTTCCTGGA+AGG 0.505510 4_2:+70580044 Msa0619480:CDS
ATAGCTGGGAAATTGAATCT+TGG 0.507663 4_2:-70580640 None:intergenic
TCATACCAAATCTTGTTTGG+AGG 0.510529 4_2:+70579690 Msa0619480:five_prime_UTR
AGTGCGAGCATTGTGGCCAC+TGG 0.511613 4_2:-70579228 None:intergenic
CCTTTCAACTCTATATGCTA+AGG 0.516881 4_2:-70580710 None:intergenic
CGTTCAAATGACTTTCTACT+GGG 0.520909 4_2:-70582795 None:intergenic
CTATACGAAATCAAAGTCAT+TGG 0.522063 4_2:+70579923 Msa0619480:five_prime_UTR
AAGTGGTTTCTTGGAGGGAA+CGG 0.523263 4_2:+70579585 Msa0619480:five_prime_UTR
CAATAGCAAAATATGGCTGC+TGG 0.524984 4_2:+70583409 Msa0619480:three_prime_UTR
AGAAAGTCATTTGAACGAGT+TGG 0.530001 4_2:+70582801 Msa0619480:CDS
AGGAAGCAGCTTCGGCTGCA+TGG 0.532690 4_2:+70582410 Msa0619480:CDS
TCAATATCCCTCTGTAGTCC+CGG 0.534477 4_2:-70582323 None:intergenic
AGCTTCAAGTGGTTTCTTGG+AGG 0.534532 4_2:+70579579 Msa0619480:five_prime_UTR
GGGTTTACACACTGTTGTTG+AGG 0.535537 4_2:-70579480 None:intergenic
GCTAAGGCTCGTAGATTCAC+AGG 0.538658 4_2:-70580694 None:intergenic
TGAGAAGGCTATAACTCGCA+TGG 0.539683 4_2:+70582445 Msa0619480:CDS
TTCAAAGCTCATCTAATCAA+AGG 0.543340 4_2:+70582291 Msa0619480:CDS
AGGAAGAGCGTAGAGAAAGT+GGG 0.545188 4_2:-70579385 None:intergenic
AAACCTTCTTTATCCTGACC+AGG 0.545502 4_2:-70580856 None:intergenic
GCTTCAAGTGGTTTCTTGGA+GGG 0.545578 4_2:+70579580 Msa0619480:five_prime_UTR
GCATACAGAACTAAAAGAGT+TGG 0.545618 4_2:+70583179 Msa0619480:CDS
TTCTCGCCTTCTATCTCTCA+AGG 0.546788 4_2:+70583023 Msa0619480:CDS
ATGCCCTTATAATGAAGCTA+TGG 0.547604 4_2:-70579731 None:intergenic
AAGTAGATTTCAGAGATGCT+GGG 0.547739 4_2:+70582752 Msa0619480:CDS
AGGCCGCTTTGATATTGCAC+GGG 0.548501 4_2:+70582969 Msa0619480:intron
TTCTACTGGGCATAAATGAT+GGG 0.548996 4_2:-70582782 None:intergenic
ATCAGTTAAAGCATTCCAAA+CGG 0.551914 4_2:-70579648 None:intergenic
GGACTTCAGTTCAAATTAAG+GGG 0.555128 4_2:+70583532 Msa0619480:three_prime_UTR
AATATGCAGGAAGGGTGTAA+AGG 0.555160 4_2:+70581610 Msa0619480:intron
GGTGACTTCGACTCATTCCA+TGG 0.555479 4_2:+70581718 Msa0619480:CDS
ACCAGACAGGACAACAACCT+TGG 0.555859 4_2:+70583060 Msa0619480:CDS
TCTTGAAAATTTGCAGGACG+AGG 0.558044 4_2:+70582547 Msa0619480:CDS
GTTTCATGGCATGTTGGCAT+AGG 0.558640 4_2:-70579257 None:intergenic
AGTCATACAATTTCAGCTGT+GGG 0.559385 4_2:-70583657 None:intergenic
AGGAAGGGTTTATGCCTATG+AGG 0.559853 4_2:+70582390 Msa0619480:CDS
GCACCTGGTCAGGATAAAGA+AGG 0.563894 4_2:+70580853 Msa0619480:CDS
TTGCTGAATATGGTCAGGAA+GGG 0.565420 4_2:+70582375 Msa0619480:CDS
GATGATGTTTCATGGCATGT+TGG 0.566768 4_2:-70579263 None:intergenic
GTTGCTGAATATGGTCAGGA+AGG 0.566894 4_2:+70582374 Msa0619480:CDS
ATTTGTTGCTGAATATGGTC+AGG 0.570102 4_2:+70582370 Msa0619480:CDS
TTTCCCTCGCAATTTGCACA+AGG 0.570479 4_2:+70579445 Msa0619480:five_prime_UTR
TAGCAAAATATGGCTGCTGG+TGG 0.574174 4_2:+70583412 Msa0619480:three_prime_UTR
CTTCCATGATAGCTTCAGAA+AGG 0.579834 4_2:-70581822 None:intergenic
TCCTTTCCAAGAAAATAGCT+GGG 0.581774 4_2:-70580654 None:intergenic
GTGCTAAGCAAGAATGTACA+AGG 0.582199 4_2:-70583297 None:intergenic
CATGAAGCACCATATAAAGC+AGG 0.584729 4_2:-70581633 None:intergenic
TATTGCTATGACAGTTTGCG+TGG 0.584981 4_2:+70583615 Msa0619480:three_prime_UTR
AGAGCAAAGAGGATCTCAAA+GGG 0.585816 4_2:+70580075 Msa0619480:CDS
GCCTTCTATCTCTCAAGGCA+AGG 0.588537 4_2:+70583028 Msa0619480:CDS
TTCCCTCGCAATTTGCACAA+GGG 0.591926 4_2:+70579446 Msa0619480:five_prime_UTR
TTACAAATACCGCAAACCAA+AGG 0.593624 4_2:+70582511 Msa0619480:CDS
AAAGTGGGGTGGACTTCATG+AGG 0.593784 4_2:+70582999 Msa0619480:CDS
GAGTCATACAATTTCAGCTG+TGG 0.594592 4_2:-70583658 None:intergenic
TGCCCTTGTGCAAATTGCGA+GGG 0.594902 4_2:-70579448 None:intergenic
ATCCTTCCAGGAAATGGGCA+AGG 0.601199 4_2:-70580046 None:intergenic
AAATGGACGTTTGAGCAACT+AGG 0.601868 4_2:+70581742 Msa0619480:CDS
AAAATTTACCAATAAGTACA+TGG 0.603191 4_2:-70583460 None:intergenic
CTACAACACAAGGCTTGTCA+AGG 0.605033 4_2:-70580960 None:intergenic
AGTAGATTTCAGAGATGCTG+GGG 0.605132 4_2:+70582753 Msa0619480:CDS
GCTTCGGCTGCATGGAAGAG+TGG 0.605805 4_2:+70582418 Msa0619480:CDS
GAGAAGGCTATAACTCGCAT+GGG 0.607086 4_2:+70582446 Msa0619480:CDS
AGTGAGTTAAACAGCAATTG+GGG 0.607282 4_2:+70580916 Msa0619480:CDS
AGCAAAATATGGCTGCTGGT+GGG 0.608587 4_2:+70583413 Msa0619480:three_prime_UTR
TTAAGTTGCTTATACAAACA+TGG 0.609473 4_2:+70579893 Msa0619480:five_prime_UTR
GGTATTTGTAAGCTAGAGAG+AGG 0.610502 4_2:-70582499 None:intergenic
TGTGTGTCTTGAGAAATATA+AGG 0.610890 4_2:-70583150 None:intergenic
CCTTAGCATATAGAGTTGAA+AGG 0.613436 4_2:+70580710 Msa0619480:CDS
TAGAGCAAAGAGGATCTCAA+AGG 0.614149 4_2:+70580074 Msa0619480:CDS
AAGAGTTCCGGGACTACAGA+GGG 0.615046 4_2:+70582316 Msa0619480:CDS
TGGAAGAGTGGATATTGAGA+AGG 0.615915 4_2:+70582430 Msa0619480:CDS
ATGCCCTTGTGCAAATTGCG+AGG 0.617760 4_2:-70579449 None:intergenic
CGGGCGCTGGAAAAGTGGGG+TGG 0.622705 4_2:+70582988 Msa0619480:CDS
GAAACCGACAAATTGGCACC+TGG 0.631692 4_2:+70580838 Msa0619480:CDS
GCACGGGCGCTGGAAAAGTG+GGG 0.634461 4_2:+70582985 Msa0619480:CDS
TTTCATGTGAAGGAAAATGG+AGG 0.635353 4_2:+70581100 Msa0619480:intron
AAGGCTATAACTCGCATGGG+TGG 0.635453 4_2:+70582449 Msa0619480:CDS
GGTTAACTGTGAGCTTCAAG+TGG 0.636625 4_2:+70579568 Msa0619480:five_prime_UTR
TAAGCAAGAATGTACAAGGA+AGG 0.637170 4_2:-70583293 None:intergenic
TTTCTCAAGACACACACAAG+TGG 0.642360 4_2:+70583157 Msa0619480:CDS
CAAGAGTTCCGGGACTACAG+AGG 0.649469 4_2:+70582315 Msa0619480:CDS
GGTCTGTAAAATCTGGAACA+AGG 0.653193 4_2:+70580477 Msa0619480:CDS
AGAAGAAGAAGGTGACCGTG+AGG 0.654804 4_2:+70579547 Msa0619480:five_prime_UTR
CCAAAAGTCCATCAAATCTG+CGG 0.656121 4_2:-70580996 None:intergenic
GCTACAGAGTGCGAGCATTG+TGG 0.656834 4_2:-70579235 None:intergenic
TATGGTGCTTCATGCTCGTG+TGG 0.656840 4_2:+70581642 Msa0619480:CDS
GATTTGGTATGAAATCAGCT+AGG 0.657566 4_2:-70579679 None:intergenic
AAACCCAGAAGCCATTTAGG+TGG 0.657917 4_2:+70579497 Msa0619480:five_prime_UTR
AGGATATGGTTAGAGCAAAG+AGG 0.657999 4_2:+70580064 Msa0619480:CDS
ACAGGACAACAACCTTGGCA+AGG 0.660733 4_2:+70583065 Msa0619480:CDS
TGAACTTCATCTACAACACA+AGG 0.661750 4_2:-70580970 None:intergenic
GAAGCTCACAGTTAACCTCA+CGG 0.685357 4_2:-70579562 None:intergenic
TTTAACTCACTGGAAGACGC+AGG 0.696438 4_2:-70580904 None:intergenic
TGGTCCGTACCTGAAGAATG+CGG 0.706706 4_2:-70581389 None:intergenic
CACACTGCTAAAGTACTCTG+TGG 0.709210 4_2:+70581774 Msa0619480:CDS
GCGCCCGTGCAATATCAAAG+CGG 0.728813 4_2:-70582972 None:intergenic
GTAGATTTCAGAGATGCTGG+GGG 0.734657 4_2:+70582754 Msa0619480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTATTTATATCATTCA+TGG - chr4_2:70580542-70580561 None:intergenic 10.0%
!!! CTTTTTCAAAAAAAAAAAAA+AGG - chr4_2:70581966-70581985 None:intergenic 10.0%
!!! ATTTACTTTCTTTTTATAAA+AGG - chr4_2:70582001-70582020 None:intergenic 10.0%
!!! CACATGAAAATATTTTTTAT+TGG - chr4_2:70581089-70581108 None:intergenic 15.0%
!!! TAAAAAATATTTTCATGTGA+AGG + chr4_2:70581090-70581109 Msa0619480:intron 15.0%
!! AAAAAAAAAAAAAGGAGATA+TGG - chr4_2:70581958-70581977 None:intergenic 15.0%
!!! TCTTATTACCATTTTAATTT+TGG + chr4_2:70582916-70582935 Msa0619480:intron 15.0%
!!! CTTATTACCATTTTAATTTT+GGG + chr4_2:70582917-70582936 Msa0619480:intron 15.0%
!! ATAAATGAGCAAAAAAAAAA+AGG + chr4_2:70583572-70583591 Msa0619480:three_prime_UTR 15.0%
!! TAAATGAGCAAAAAAAAAAA+GGG + chr4_2:70583573-70583592 Msa0619480:three_prime_UTR 15.0%
!!! ATTTTGTAGTATTAGAAAGT+TGG - chr4_2:70580375-70580394 None:intergenic 20.0%
!!! AAATTCTTTTTTAATGCTTC+AGG + chr4_2:70580391-70580410 Msa0619480:intron 20.0%
!!! GTATTAACTTTAAGAAACAT+AGG - chr4_2:70580508-70580527 None:intergenic 20.0%
!! ATCAACTAATTTATCTTATG+AGG + chr4_2:70580606-70580625 Msa0619480:CDS 20.0%
!! TCTATACTAGATTGTTTATT+AGG + chr4_2:70581026-70581045 Msa0619480:intron 20.0%
!!! AATATGTATTTTACTAACAG+TGG - chr4_2:70581518-70581537 None:intergenic 20.0%
!!! ATACAAGTTCAAACTTTTAT+CGG - chr4_2:70581562-70581581 None:intergenic 20.0%
!! GTTTGTCTATAAATATGATT+TGG + chr4_2:70581847-70581866 Msa0619480:intron 20.0%
!!! TCTTTTTATAAAAGGAGATA+TGG - chr4_2:70581993-70582012 None:intergenic 20.0%
!!! AAGTAAATAACTGTTTTTGT+TGG + chr4_2:70582013-70582032 Msa0619480:intron 20.0%
!! AAAATATTGAAGTTGAGAAA+GGG - chr4_2:70582841-70582860 None:intergenic 20.0%
!! AAAATTTACCAATAAGTACA+TGG - chr4_2:70583463-70583482 None:intergenic 20.0%
!! AAATGATGGTTTGGAATATA+AGG - chr4_2:70579408-70579427 None:intergenic 25.0%
! CAAAGATAAAAATGATGGTT+TGG - chr4_2:70579417-70579436 None:intergenic 25.0%
! AGACTCAAAGATAAAAATGA+TGG - chr4_2:70579422-70579441 None:intergenic 25.0%
! TATTCAAATTTCCACCTAAA+TGG - chr4_2:70579511-70579530 None:intergenic 25.0%
! TTAGGTGGAAATTTGAATAA+TGG + chr4_2:70579512-70579531 Msa0619480:five_prime_UTR 25.0%
! TAGGTGGAAATTTGAATAAT+GGG + chr4_2:70579513-70579532 Msa0619480:five_prime_UTR 25.0%
! ATTTCATACCAAATCTTGTT+TGG + chr4_2:70579687-70579706 Msa0619480:five_prime_UTR 25.0%
! AAGCTATGGTTAATCAATTA+TGG - chr4_2:70579720-70579739 None:intergenic 25.0%
! TTAACCATAGCTTCATTATA+AGG + chr4_2:70579727-70579746 Msa0619480:five_prime_UTR 25.0%
! TAACCATAGCTTCATTATAA+GGG + chr4_2:70579728-70579747 Msa0619480:five_prime_UTR 25.0%
!! ACCATTTTCATAAGTTGTTT+TGG - chr4_2:70579817-70579836 None:intergenic 25.0%
! TCAAGTGTTTATCATATAAG+TGG - chr4_2:70579873-70579892 None:intergenic 25.0%
!! TTAAGTTGCTTATACAAACA+TGG + chr4_2:70579893-70579912 Msa0619480:five_prime_UTR 25.0%
! AATCTTATCATATGACTCTT+TGG - chr4_2:70579962-70579981 None:intergenic 25.0%
!!! AGAGTTGTTTTTGTTTTTAG+TGG + chr4_2:70580016-70580035 Msa0619480:CDS 25.0%
!!! GAGTTGTTTTTGTTTTTAGT+GGG + chr4_2:70580017-70580036 Msa0619480:CDS 25.0%
! TTTAAAAACTGTATGAACAG+AGG + chr4_2:70580308-70580327 Msa0619480:intron 25.0%
! TTAAAAACTGTATGAACAGA+GGG + chr4_2:70580309-70580328 Msa0619480:intron 25.0%
!!! TTTTTTAATGCTTCAGGAAT+GGG + chr4_2:70580397-70580416 Msa0619480:intron 25.0%
! AAAACTTCTTTGGTTGTTAA+TGG + chr4_2:70580781-70580800 Msa0619480:CDS 25.0%
! TCTTCTGTCAAAAAGATAAA+TGG + chr4_2:70580805-70580824 Msa0619480:CDS 25.0%
! GTTGCCTTAATTCTTAAAAT+GGG + chr4_2:70581048-70581067 Msa0619480:intron 25.0%
!!! ACATCCCATTTTAAGAATTA+AGG - chr4_2:70581055-70581074 None:intergenic 25.0%
!! TATTTTCATGTGAAGGAAAA+TGG + chr4_2:70581097-70581116 Msa0619480:intron 25.0%
! TCAATATCTCTAGTGTAAAA+AGG - chr4_2:70581233-70581252 None:intergenic 25.0%
!!! ACAAATGTTTTTTTGCCAAT+TGG - chr4_2:70581310-70581329 None:intergenic 25.0%
!! ATCTTACTGATTGCTAAATT+TGG - chr4_2:70581345-70581364 None:intergenic 25.0%
! TCTTGATTAAATCAATATGC+AGG + chr4_2:70581597-70581616 Msa0619480:intron 25.0%
! ATTAAATCAATATGCAGGAA+GGG + chr4_2:70581602-70581621 Msa0619480:intron 25.0%
!!! ATAACTGTTTTTGTTGGTAT+TGG + chr4_2:70582019-70582038 Msa0619480:intron 25.0%
!! TATTGGATACAATCTTTTGA+GGG + chr4_2:70582036-70582055 Msa0619480:intron 25.0%
! TAAATCGATCCACATTTAAA+TGG + chr4_2:70582059-70582078 Msa0619480:intron 25.0%
!! TGTTATAAGTTCTTTGTTTC+AGG + chr4_2:70582088-70582107 Msa0619480:intron 25.0%
! GAACAACAAATTATATCATC+TGG + chr4_2:70582215-70582234 Msa0619480:CDS 25.0%
!!! TTAACTTTAGCTTGTTATTC+TGG - chr4_2:70582611-70582630 None:intergenic 25.0%
! CAAAATATTGAAGTTGAGAA+AGG - chr4_2:70582842-70582861 None:intergenic 25.0%
! TAAAAGAGTTGGACATAAAT+TGG + chr4_2:70583190-70583209 Msa0619480:CDS 25.0%
! AAAAGAGTTGGACATAAATT+GGG + chr4_2:70583191-70583210 Msa0619480:CDS 25.0%
! CAAATCAAGATTGAAAAAAG+AGG - chr4_2:70583337-70583356 None:intergenic 25.0%
!!! CTCTTTTTTCAATCTTGATT+TGG + chr4_2:70583335-70583354 Msa0619480:three_prime_UTR 25.0%
!! TAAATTTTCTTCCTTTCACT+TGG + chr4_2:70583475-70583494 Msa0619480:three_prime_UTR 25.0%
!! TTGTTGTTGATGATGTTTCA+TGG - chr4_2:70579274-70579293 None:intergenic 30.0%
! ATCAGTTAAAGCATTCCAAA+CGG - chr4_2:70579651-70579670 None:intergenic 30.0%
TCTACTAGCATAAACTCTTT+AGG + chr4_2:70579783-70579802 Msa0619480:five_prime_UTR 30.0%
GCCAAAACAACTTATGAAAA+TGG + chr4_2:70579813-70579832 Msa0619480:five_prime_UTR 30.0%
! CTTTGATTTCGTATAGAACT+TGG - chr4_2:70579919-70579938 None:intergenic 30.0%
CTATACGAAATCAAAGTCAT+TGG + chr4_2:70579923-70579942 Msa0619480:five_prime_UTR 30.0%
!!! CTTTTTTAATGCTTCAGGAA+TGG + chr4_2:70580396-70580415 Msa0619480:intron 30.0%
!! TCGAGAACTTCATTTTTCAA+TGG + chr4_2:70580421-70580440 Msa0619480:CDS 30.0%
!! CTTCATTTTTCAATGGTTGA+TGG + chr4_2:70580428-70580447 Msa0619480:CDS 30.0%
TTAAGAAGTTTGAGGGAAAA+TGG + chr4_2:70580456-70580475 Msa0619480:CDS 30.0%
! TAGAGTTGAAAGGAATCTTT+TGG + chr4_2:70580720-70580739 Msa0619480:CDS 30.0%
! AGAGTTGAAAGGAATCTTTT+GGG + chr4_2:70580721-70580740 Msa0619480:CDS 30.0%
TTTATGTGAAACCGACAAAT+TGG + chr4_2:70580831-70580850 Msa0619480:CDS 30.0%
GGTTGCCTTAATTCTTAAAA+TGG + chr4_2:70581047-70581066 Msa0619480:intron 30.0%
!! TTACTAACAGTGGATTTTGA+TGG - chr4_2:70581508-70581527 None:intergenic 30.0%
GATTAAATCAATATGCAGGA+AGG + chr4_2:70581601-70581620 Msa0619480:intron 30.0%
! TTGTTTTCACTCGAAATGTT+TGG + chr4_2:70581902-70581921 Msa0619480:intron 30.0%
TGTCTTGCTTCAACTTATAT+GGG - chr4_2:70581928-70581947 None:intergenic 30.0%
! GTATTGGATACAATCTTTTG+AGG + chr4_2:70582035-70582054 Msa0619480:intron 30.0%
ACATTTCAGCCATTTAAATG+TGG - chr4_2:70582071-70582090 None:intergenic 30.0%
TTCAAAGCTCATCTAATCAA+AGG + chr4_2:70582291-70582310 Msa0619480:CDS 30.0%
! ATTTCAGGAGTTCAGATTTT+AGG - chr4_2:70582352-70582371 None:intergenic 30.0%
CATATTCAGCAACAAATTTC+AGG - chr4_2:70582367-70582386 None:intergenic 30.0%
!! CTGAAATTTGTTGCTGAATA+TGG + chr4_2:70582365-70582384 Msa0619480:CDS 30.0%
AATTGACAATGACATGATGA+AGG + chr4_2:70582629-70582648 Msa0619480:intron 30.0%
AATAAGATACATATGCCATG+TGG - chr4_2:70582903-70582922 None:intergenic 30.0%
TGCTAAGCCCAAAATTAAAA+TGG - chr4_2:70582927-70582946 None:intergenic 30.0%
!! AGATAATGGAATTAACTTGC+AGG + chr4_2:70582949-70582968 Msa0619480:intron 30.0%
TGTGTGTCTTGAGAAATATA+AGG - chr4_2:70583153-70583172 None:intergenic 30.0%
TAAGTACAACTATGTGTTGA+TGG + chr4_2:70583258-70583277 Msa0619480:three_prime_UTR 30.0%
!!! AGCCATATTTTGCTATTGAA+GGG - chr4_2:70583407-70583426 None:intergenic 30.0%
! TTAATTTGAACTGAAGTCCT+AGG - chr4_2:70583531-70583550 None:intergenic 30.0%
TAGGACTTCAGTTCAAATTA+AGG + chr4_2:70583530-70583549 Msa0619480:three_prime_UTR 30.0%
AGGACTTCAGTTCAAATTAA+GGG + chr4_2:70583531-70583550 Msa0619480:three_prime_UTR 30.0%
TGAGCAAAAAAAAAAAGGGA+AGG + chr4_2:70583577-70583596 Msa0619480:three_prime_UTR 30.0%
AACAACAAACCAAAAACCAG+TGG + chr4_2:70579212-70579231 Msa0619480:five_prime_UTR 35.0%
GAAGAAGAAGAAGAAGAAGA+AGG - chr4_2:70579353-70579372 None:intergenic 35.0%
CTAGAAGAAGAAGAAGAAGA+AGG + chr4_2:70579536-70579555 Msa0619480:five_prime_UTR 35.0%
ATGCTGATATTAACTCCGTT+TGG + chr4_2:70579633-70579652 Msa0619480:five_prime_UTR 35.0%
! GATTTGGTATGAAATCAGCT+AGG - chr4_2:70579682-70579701 None:intergenic 35.0%
! TCATACCAAATCTTGTTTGG+AGG + chr4_2:70579690-70579709 Msa0619480:five_prime_UTR 35.0%
GATTACCTCCAAACAAGATT+TGG - chr4_2:70579698-70579717 None:intergenic 35.0%
ATGCCCTTATAATGAAGCTA+TGG - chr4_2:70579734-70579753 None:intergenic 35.0%
! CTTCATTATAAGGGCATGTT+TGG + chr4_2:70579737-70579756 Msa0619480:five_prime_UTR 35.0%
! TTATAAGGGCATGTTTGGAT+TGG + chr4_2:70579742-70579761 Msa0619480:five_prime_UTR 35.0%
AGAATGTGCTTACAGAATTG+AGG - chr4_2:70580150-70580169 None:intergenic 35.0%
TGAGAAGTGGATATCATTGA+AGG + chr4_2:70580239-70580258 Msa0619480:intron 35.0%
GAGAAGTGGATATCATTGAA+GGG + chr4_2:70580240-70580259 Msa0619480:intron 35.0%
! TGGAGACTTTAAGAAGTTTG+AGG + chr4_2:70580448-70580467 Msa0619480:CDS 35.0%
! GGAGACTTTAAGAAGTTTGA+GGG + chr4_2:70580449-70580468 Msa0619480:CDS 35.0%
GGAAAATGGTCTGTAAAATC+TGG + chr4_2:70580470-70580489 Msa0619480:CDS 35.0%
ATAGCTGGGAAATTGAATCT+TGG - chr4_2:70580643-70580662 None:intergenic 35.0%
!! CAATTTCCCAGCTATTTTCT+TGG + chr4_2:70580648-70580667 Msa0619480:CDS 35.0%
TCCTTTCCAAGAAAATAGCT+GGG - chr4_2:70580657-70580676 None:intergenic 35.0%
ATCCTTTCCAAGAAAATAGC+TGG - chr4_2:70580658-70580677 None:intergenic 35.0%
CCTTTCAACTCTATATGCTA+AGG - chr4_2:70580713-70580732 None:intergenic 35.0%
CCTTAGCATATAGAGTTGAA+AGG + chr4_2:70580710-70580729 Msa0619480:CDS 35.0%
! GAGTTGAAAGGAATCTTTTG+GGG + chr4_2:70580722-70580741 Msa0619480:CDS 35.0%
CGACTTGCATAAAACTTCTT+TGG + chr4_2:70580771-70580790 Msa0619480:CDS 35.0%
CAGTGAGTTAAACAGCAATT+GGG + chr4_2:70580915-70580934 Msa0619480:CDS 35.0%
AGTGAGTTAAACAGCAATTG+GGG + chr4_2:70580916-70580935 Msa0619480:CDS 35.0%
AACAGCAATTGGGGTATATT+TGG + chr4_2:70580925-70580944 Msa0619480:CDS 35.0%
TGAACTTCATCTACAACACA+AGG - chr4_2:70580973-70580992 None:intergenic 35.0%
TTTCATGTGAAGGAAAATGG+AGG + chr4_2:70581100-70581119 Msa0619480:intron 35.0%
GCATGCTGTAAAAGATTTCT+AGG + chr4_2:70581256-70581275 Msa0619480:intron 35.0%
! TTTTCTGACTCAACTCCAAT+TGG + chr4_2:70581292-70581311 Msa0619480:intron 35.0%
! GGCAAAAAAACATTTGTTGC+AGG + chr4_2:70581313-70581332 Msa0619480:intron 35.0%
!! ACTCTGGTTCATTTTCAGAT+TGG - chr4_2:70581412-70581431 None:intergenic 35.0%
AGATTCTCTTGTTCTAACTC+TGG - chr4_2:70581428-70581447 None:intergenic 35.0%
! TTTTATCGGCAATTGTGCTT+AGG - chr4_2:70581548-70581567 None:intergenic 35.0%
!!! ACAAGAGATCAGTTTTGAAC+AGG + chr4_2:70581690-70581709 Msa0619480:CDS 35.0%
GTGTCTTGCTTCAACTTATA+TGG - chr4_2:70581929-70581948 None:intergenic 35.0%
CTTATTGCACACAAGTTTGA+TGG - chr4_2:70582131-70582150 None:intergenic 35.0%
! CAAATTATATCATCTGGCTC+TGG + chr4_2:70582221-70582240 Msa0619480:CDS 35.0%
TAATCAAAGGTCAAGAGTTC+CGG + chr4_2:70582304-70582323 Msa0619480:CDS 35.0%
! ATTTGTTGCTGAATATGGTC+AGG + chr4_2:70582370-70582389 Msa0619480:CDS 35.0%
TTACAAATACCGCAAACCAA+AGG + chr4_2:70582511-70582530 Msa0619480:CDS 35.0%
TACAAATACCGCAAACCAAA+GGG + chr4_2:70582512-70582531 Msa0619480:CDS 35.0%
GGACAATCTTGAAAATTTGC+AGG + chr4_2:70582541-70582560 Msa0619480:CDS 35.0%
TGGCAAGTAGCAACTAAAAA+TGG - chr4_2:70582591-70582610 None:intergenic 35.0%
ACATGTGTAACATCGTTTAC+AGG + chr4_2:70582694-70582713 Msa0619480:intron 35.0%
TAAGTAGATTTCAGAGATGC+TGG + chr4_2:70582751-70582770 Msa0619480:CDS 35.0%
AAGTAGATTTCAGAGATGCT+GGG + chr4_2:70582752-70582771 Msa0619480:CDS 35.0%
TTCTACTGGGCATAAATGAT+GGG - chr4_2:70582785-70582804 None:intergenic 35.0%
TTTCTACTGGGCATAAATGA+TGG - chr4_2:70582786-70582805 None:intergenic 35.0%
CGTTCAAATGACTTTCTACT+GGG - chr4_2:70582798-70582817 None:intergenic 35.0%
TCGTTCAAATGACTTTCTAC+TGG - chr4_2:70582799-70582818 None:intergenic 35.0%
AGAAAGTCATTTGAACGAGT+TGG + chr4_2:70582801-70582820 Msa0619480:CDS 35.0%
! CATTTTTCTTATCCTTGCCA+AGG - chr4_2:70583080-70583099 None:intergenic 35.0%
!! TATCTACATCTGCTGATTCT+CGG - chr4_2:70583107-70583126 None:intergenic 35.0%
GCATACAGAACTAAAAGAGT+TGG + chr4_2:70583179-70583198 Msa0619480:CDS 35.0%
TAAGCAAGAATGTACAAGGA+AGG - chr4_2:70583296-70583315 None:intergenic 35.0%
CACCCTTCAATAGCAAAATA+TGG + chr4_2:70583402-70583421 Msa0619480:three_prime_UTR 35.0%
!!! CAGCCATATTTTGCTATTGA+AGG - chr4_2:70583408-70583427 None:intergenic 35.0%
TACTGATGCCATGTACTTAT+TGG + chr4_2:70583452-70583471 Msa0619480:three_prime_UTR 35.0%
GAGACAGACTATTTAATCCT+AGG + chr4_2:70583511-70583530 Msa0619480:three_prime_UTR 35.0%
GGACTTCAGTTCAAATTAAG+GGG + chr4_2:70583532-70583551 Msa0619480:three_prime_UTR 35.0%
AATTTCAGCTGTGGGATTAT+AGG - chr4_2:70583652-70583671 None:intergenic 35.0%
AGTCATACAATTTCAGCTGT+GGG - chr4_2:70583660-70583679 None:intergenic 35.0%
GATGATGTTTCATGGCATGT+TGG - chr4_2:70579266-70579285 None:intergenic 40.0%
TGTAAACCCAGAAGCCATTT+AGG + chr4_2:70579494-70579513 Msa0619480:five_prime_UTR 40.0%
TTTCCACCTAAATGGCTTCT+GGG - chr4_2:70579503-70579522 None:intergenic 40.0%
ATTTCCACCTAAATGGCTTC+TGG - chr4_2:70579504-70579523 None:intergenic 40.0%
ACCATATCCTTCCAGGAAAT+GGG - chr4_2:70580054-70580073 None:intergenic 40.0%
AACCATATCCTTCCAGGAAA+TGG - chr4_2:70580055-70580074 None:intergenic 40.0%
AGGATATGGTTAGAGCAAAG+AGG + chr4_2:70580064-70580083 Msa0619480:CDS 40.0%
TAGAGCAAAGAGGATCTCAA+AGG + chr4_2:70580074-70580093 Msa0619480:CDS 40.0%
AGAGCAAAGAGGATCTCAAA+GGG + chr4_2:70580075-70580094 Msa0619480:CDS 40.0%
GATCTCAAAGGGCAATGTAT+TGG + chr4_2:70580086-70580105 Msa0619480:CDS 40.0%
!!! CATTGAAGCTCGTGTTGTTT+TGG + chr4_2:70580111-70580130 Msa0619480:CDS 40.0%
TTCTATGTGTGACTGAGAAG+TGG + chr4_2:70580226-70580245 Msa0619480:intron 40.0%
AAGTGGATATCATTGAAGGG+TGG + chr4_2:70580243-70580262 Msa0619480:intron 40.0%
! GGTCTGTAAAATCTGGAACA+AGG + chr4_2:70580477-70580496 Msa0619480:CDS 40.0%
CCTGCAAAAAGCAGAATTGA+AGG - chr4_2:70580581-70580600 None:intergenic 40.0%
!!! CCTTCAATTCTGCTTTTTGC+AGG + chr4_2:70580578-70580597 Msa0619480:intron 40.0%
!! TCCCAGCTATTTTCTTGGAA+AGG + chr4_2:70580653-70580672 Msa0619480:CDS 40.0%
CTTGGAAAGGATTGTCAGAT+CGG + chr4_2:70580666-70580685 Msa0619480:CDS 40.0%
! GTTTTATGCAAGTCGTCTTC+TGG - chr4_2:70580766-70580785 None:intergenic 40.0%
AAACCTTCTTTATCCTGACC+AGG - chr4_2:70580859-70580878 None:intergenic 40.0%
TGGTCAGGATAAAGAAGGTT+TGG + chr4_2:70580858-70580877 Msa0619480:CDS 40.0%
GGTTTGGACACTTCAATTTC+CGG + chr4_2:70580874-70580893 Msa0619480:CDS 40.0%
!! CCAATTGCTGTTTAACTCAC+TGG - chr4_2:70580917-70580936 None:intergenic 40.0%
CCAGTGAGTTAAACAGCAAT+TGG + chr4_2:70580914-70580933 Msa0619480:CDS 40.0%
CCAAAAGTCCATCAAATCTG+CGG - chr4_2:70580999-70581018 None:intergenic 40.0%
ACATTCCATACATCACGAAC+AGG - chr4_2:70581166-70581185 None:intergenic 40.0%
GAAACACGCATTACTTACTC+AGG - chr4_2:70581211-70581230 None:intergenic 40.0%
CAATAAAGTCCGCATTCTTC+AGG + chr4_2:70581380-70581399 Msa0619480:CDS 40.0%
TGCTAGCAAGCATAATACAG+TGG - chr4_2:70581476-70581495 None:intergenic 40.0%
! AATATGCAGGAAGGGTGTAA+AGG + chr4_2:70581610-70581629 Msa0619480:intron 40.0%
GTGTAAAGGCCTGCTTTATA+TGG + chr4_2:70581624-70581643 Msa0619480:CDS 40.0%
! CATGAAGCACCATATAAAGC+AGG - chr4_2:70581636-70581655 None:intergenic 40.0%
!!! ATCAGTTTTGAACAGGCTGA+AGG + chr4_2:70581697-70581716 Msa0619480:CDS 40.0%
TCGACTCATTCCATGGAAAA+TGG + chr4_2:70581725-70581744 Msa0619480:CDS 40.0%
AAATGGACGTTTGAGCAACT+AGG + chr4_2:70581742-70581761 Msa0619480:CDS 40.0%
!! GTTCCTTTCTGAAGCTATCA+TGG + chr4_2:70581819-70581838 Msa0619480:CDS 40.0%
CTTCCATGATAGCTTCAGAA+AGG - chr4_2:70581825-70581844 None:intergenic 40.0%
!! TTCTGAAGCTATCATGGAAG+AGG + chr4_2:70581825-70581844 Msa0619480:CDS 40.0%
TAAGAGACTACGTTGAGAAC+CGG + chr4_2:70582147-70582166 Msa0619480:CDS 40.0%
CAGGAAATTGTGATGCTTTC+CGG - chr4_2:70582169-70582188 None:intergenic 40.0%
GTATTCTGCTCACAAACTTC+AGG - chr4_2:70582188-70582207 None:intergenic 40.0%
AATCAAAGGTCAAGAGTTCC+GGG + chr4_2:70582305-70582324 Msa0619480:CDS 40.0%
TTGCTGAATATGGTCAGGAA+GGG + chr4_2:70582375-70582394 Msa0619480:CDS 40.0%
TGGAAGAGTGGATATTGAGA+AGG + chr4_2:70582430-70582449 Msa0619480:CDS 40.0%
AGCTAGAGAGAGGTTCATTA+TGG - chr4_2:70582492-70582511 None:intergenic 40.0%
GGTATTTGTAAGCTAGAGAG+AGG - chr4_2:70582502-70582521 None:intergenic 40.0%
TCTTGAAAATTTGCAGGACG+AGG + chr4_2:70582547-70582566 Msa0619480:CDS 40.0%
GACAATGACATGATGAAGGA+TGG + chr4_2:70582633-70582652 Msa0619480:intron 40.0%
AGTAGATTTCAGAGATGCTG+GGG + chr4_2:70582753-70582772 Msa0619480:CDS 40.0%
!! AGTCATTTGAACGAGTTGGT+AGG + chr4_2:70582805-70582824 Msa0619480:intron 40.0%
GTTTGCGTTGCTTACTTTCA+AGG + chr4_2:70582861-70582880 Msa0619480:intron 40.0%
TATCGATGTAACATGCCACA+TGG + chr4_2:70582885-70582904 Msa0619480:intron 40.0%
TTGGGCTTAGCAGTAGATAA+TGG + chr4_2:70582935-70582954 Msa0619480:intron 40.0%
AAGGAGAAAAAGAACCAGAC+AGG + chr4_2:70583047-70583066 Msa0619480:CDS 40.0%
TTTCTCAAGACACACACAAG+TGG + chr4_2:70583157-70583176 Msa0619480:CDS 40.0%
GTGCTAAGCAAGAATGTACA+AGG - chr4_2:70583300-70583319 None:intergenic 40.0%
CAATAGCAAAATATGGCTGC+TGG + chr4_2:70583409-70583428 Msa0619480:three_prime_UTR 40.0%
TATTGCTATGACAGTTTGCG+TGG + chr4_2:70583615-70583634 Msa0619480:three_prime_UTR 40.0%
GAGTCATACAATTTCAGCTG+TGG - chr4_2:70583661-70583680 None:intergenic 40.0%
GTTTCATGGCATGTTGGCAT+AGG - chr4_2:70579260-70579279 None:intergenic 45.0%
TGAGTGTGAGTGTGTGAAGA+AGG - chr4_2:70579307-70579326 None:intergenic 45.0%
! AGGAAGAGCGTAGAGAAAGT+GGG - chr4_2:70579388-70579407 None:intergenic 45.0%
! AAGGAAGAGCGTAGAGAAAG+TGG - chr4_2:70579389-70579408 None:intergenic 45.0%
TTTCCCTCGCAATTTGCACA+AGG + chr4_2:70579445-70579464 Msa0619480:five_prime_UTR 45.0%
TTCCCTCGCAATTTGCACAA+GGG + chr4_2:70579446-70579465 Msa0619480:five_prime_UTR 45.0%
GGGTTTACACACTGTTGTTG+AGG - chr4_2:70579483-70579502 None:intergenic 45.0%
AAACCCAGAAGCCATTTAGG+TGG + chr4_2:70579497-70579516 Msa0619480:five_prime_UTR 45.0%
GAAGCTCACAGTTAACCTCA+CGG - chr4_2:70579565-70579584 None:intergenic 45.0%
GGTTAACTGTGAGCTTCAAG+TGG + chr4_2:70579568-70579587 Msa0619480:five_prime_UTR 45.0%
GTGAGCTTCAAGTGGTTTCT+TGG + chr4_2:70579576-70579595 Msa0619480:five_prime_UTR 45.0%
AGCTTCAAGTGGTTTCTTGG+AGG + chr4_2:70579579-70579598 Msa0619480:five_prime_UTR 45.0%
GCTTCAAGTGGTTTCTTGGA+GGG + chr4_2:70579580-70579599 Msa0619480:five_prime_UTR 45.0%
AAGTGGTTTCTTGGAGGGAA+CGG + chr4_2:70579585-70579604 Msa0619480:five_prime_UTR 45.0%
TGCTCTAACCATATCCTTCC+AGG - chr4_2:70580061-70580080 None:intergenic 45.0%
TTTAACTCACTGGAAGACGC+AGG - chr4_2:70580907-70580926 None:intergenic 45.0%
CTACAACACAAGGCTTGTCA+AGG - chr4_2:70580963-70580982 None:intergenic 45.0%
GTTCATCTCCGCAGATTTGA+TGG + chr4_2:70580988-70581007 Msa0619480:CDS 45.0%
!!! CCGCAGATTTGATGGACTTT+TGG + chr4_2:70580996-70581015 Msa0619480:CDS 45.0%
AAGCTCCTGTTCGTGATGTA+TGG + chr4_2:70581158-70581177 Msa0619480:CDS 45.0%
AAGTCCGCATTCTTCAGGTA+CGG + chr4_2:70581385-70581404 Msa0619480:intron 45.0%
AGCAAGCATAATACAGTGGC+AGG - chr4_2:70581472-70581491 None:intergenic 45.0%
! GCTCAAACGTCCATTTTCCA+TGG - chr4_2:70581738-70581757 None:intergenic 45.0%
! CACACTGCTAAAGTACTCTG+TGG + chr4_2:70581774-70581793 Msa0619480:CDS 45.0%
TCAATATCCCTCTGTAGTCC+CGG - chr4_2:70582326-70582345 None:intergenic 45.0%
GTTGCTGAATATGGTCAGGA+AGG + chr4_2:70582374-70582393 Msa0619480:CDS 45.0%
AGGAAGGGTTTATGCCTATG+AGG + chr4_2:70582390-70582409 Msa0619480:CDS 45.0%
TGAGAAGGCTATAACTCGCA+TGG + chr4_2:70582445-70582464 Msa0619480:CDS 45.0%
GAGAAGGCTATAACTCGCAT+GGG + chr4_2:70582446-70582465 Msa0619480:CDS 45.0%
AGATTGTCCCAGTAACCCTT+TGG - chr4_2:70582530-70582549 None:intergenic 45.0%
GTAGATTTCAGAGATGCTGG+GGG + chr4_2:70582754-70582773 Msa0619480:CDS 45.0%
TTCTCGCCTTCTATCTCTCA+AGG + chr4_2:70583023-70583042 Msa0619480:CDS 45.0%
TCCTTGCCTTGAGAGATAGA+AGG - chr4_2:70583032-70583051 None:intergenic 45.0%
TAGCAAAATATGGCTGCTGG+TGG + chr4_2:70583412-70583431 Msa0619480:three_prime_UTR 45.0%
AGCAAAATATGGCTGCTGGT+GGG + chr4_2:70583413-70583432 Msa0619480:three_prime_UTR 45.0%
! TCCTTTCACTTGGCGCATTT+TGG + chr4_2:70583485-70583504 Msa0619480:three_prime_UTR 45.0%
TCCAAAATGCGCCAAGTGAA+AGG - chr4_2:70583489-70583508 None:intergenic 45.0%
!! ATATAAATATATTTATACAT+TGG + chr4_2:70583233-70583252 Msa0619480:three_prime_UTR 5.0%
!!! GCATTGTGGCCACTGGTTTT+TGG - chr4_2:70579224-70579243 None:intergenic 50.0%
TGCCCTTGTGCAAATTGCGA+GGG - chr4_2:70579451-70579470 None:intergenic 50.0%
ATGCCCTTGTGCAAATTGCG+AGG - chr4_2:70579452-70579471 None:intergenic 50.0%
AGAAGAAGAAGGTGACCGTG+AGG + chr4_2:70579547-70579566 Msa0619480:five_prime_UTR 50.0%
TTGGAGGGAACGGAGAGTTA+AGG + chr4_2:70579595-70579614 Msa0619480:five_prime_UTR 50.0%
CGTATTCCTTGCCCATTTCC+TGG + chr4_2:70580040-70580059 Msa0619480:CDS 50.0%
TTCCTTGCCCATTTCCTGGA+AGG + chr4_2:70580044-70580063 Msa0619480:CDS 50.0%
ATCCTTCCAGGAAATGGGCA+AGG - chr4_2:70580049-70580068 None:intergenic 50.0%
GCCCATTTCCTGGAAGGATA+TGG + chr4_2:70580050-70580069 Msa0619480:CDS 50.0%
GCTAAGGCTCGTAGATTCAC+AGG - chr4_2:70580697-70580716 None:intergenic 50.0%
! ATGCAAGTCGTCTTCTGGCT+GGG - chr4_2:70580761-70580780 None:intergenic 50.0%
TATGCAAGTCGTCTTCTGGC+TGG - chr4_2:70580762-70580781 None:intergenic 50.0%
GAAACCGACAAATTGGCACC+TGG + chr4_2:70580838-70580857 Msa0619480:CDS 50.0%
CTGACCAGGTGCCAATTTGT+CGG - chr4_2:70580845-70580864 None:intergenic 50.0%
GCACCTGGTCAGGATAAAGA+AGG + chr4_2:70580853-70580872 Msa0619480:CDS 50.0%
TGGTCCGTACCTGAAGAATG+CGG - chr4_2:70581392-70581411 None:intergenic 50.0%
TATGGTGCTTCATGCTCGTG+TGG + chr4_2:70581642-70581661 Msa0619480:CDS 50.0%
GGTGACTTCGACTCATTCCA+TGG + chr4_2:70581718-70581737 Msa0619480:CDS 50.0%
AAGAGTTCCGGGACTACAGA+GGG + chr4_2:70582316-70582335 Msa0619480:CDS 50.0%
TGCCTATGAGGAAGCAGCTT+CGG + chr4_2:70582402-70582421 Msa0619480:CDS 50.0%
AAGGCTATAACTCGCATGGG+TGG + chr4_2:70582449-70582468 Msa0619480:CDS 50.0%
ACCGCAAACCAAAGGGTTAC+TGG + chr4_2:70582519-70582538 Msa0619480:CDS 50.0%
!! CCCAGTAACCCTTTGGTTTG+CGG - chr4_2:70582523-70582542 None:intergenic 50.0%
CCGCAAACCAAAGGGTTACT+GGG + chr4_2:70582520-70582539 Msa0619480:CDS 50.0%
ATTTCAGAGATGCTGGGGGA+TGG + chr4_2:70582758-70582777 Msa0619480:CDS 50.0%
! CAGGCCGCTTTGATATTGCA+CGG + chr4_2:70582968-70582987 Msa0619480:intron 50.0%
! AGGCCGCTTTGATATTGCAC+GGG + chr4_2:70582969-70582988 Msa0619480:intron 50.0%
! AAAGTGGGGTGGACTTCATG+AGG + chr4_2:70582999-70583018 Msa0619480:CDS 50.0%
GCCTTCTATCTCTCAAGGCA+AGG + chr4_2:70583028-70583047 Msa0619480:CDS 50.0%
ACCAGACAGGACAACAACCT+TGG + chr4_2:70583060-70583079 Msa0619480:CDS 50.0%
ACAGGACAACAACCTTGGCA+AGG + chr4_2:70583065-70583084 Msa0619480:CDS 50.0%
! GCTACAGAGTGCGAGCATTG+TGG - chr4_2:70579238-70579257 None:intergenic 55.0%
! TGCAAGTCGTCTTCTGGCTG+GGG - chr4_2:70580760-70580779 None:intergenic 55.0%
CGACAAATTGGCACCTGGTC+AGG + chr4_2:70580843-70580862 Msa0619480:CDS 55.0%
GGAAGACGCAGGCAATGAAC+CGG - chr4_2:70580896-70580915 None:intergenic 55.0%
CAAGAGTTCCGGGACTACAG+AGG + chr4_2:70582315-70582334 Msa0619480:CDS 55.0%
AGCCGAAGCTGCTTCCTCAT+AGG - chr4_2:70582407-70582426 None:intergenic 55.0%
GCGCCCGTGCAATATCAAAG+CGG - chr4_2:70582975-70582994 None:intergenic 55.0%
CTTTGATATTGCACGGGCGC+TGG + chr4_2:70582975-70582994 Msa0619480:CDS 55.0%
GCCAAGGTTGTTGTCCTGTC+TGG - chr4_2:70583064-70583083 None:intergenic 55.0%
! AGTGCGAGCATTGTGGCCAC+TGG - chr4_2:70579231-70579250 None:intergenic 60.0%
AGGAAGCAGCTTCGGCTGCA+TGG + chr4_2:70582410-70582429 Msa0619480:CDS 60.0%
GCTTCGGCTGCATGGAAGAG+TGG + chr4_2:70582418-70582437 Msa0619480:CDS 60.0%
!! TTGCACGGGCGCTGGAAAAG+TGG + chr4_2:70582983-70583002 Msa0619480:CDS 60.0%
!! TGCACGGGCGCTGGAAAAGT+GGG + chr4_2:70582984-70583003 Msa0619480:CDS 60.0%
!! GCACGGGCGCTGGAAAAGTG+GGG + chr4_2:70582985-70583004 Msa0619480:CDS 65.0%
!! CGGGCGCTGGAAAAGTGGGG+TGG + chr4_2:70582988-70583007 Msa0619480:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 70579209 70583687 70579209 ID=Msa0619480;Name=Msa0619480
chr4_2 mRNA 70579209 70583687 70579209 ID=Msa0619480-mRNA-1;Parent=Msa0619480;Name=Msa0619480-mRNA-1;_AED=0.04;_eAED=0.04;_QI=804|1|1|1|1|1|9|466|608
chr4_2 exon 70579209 70580156 70579209 ID=Msa0619480-mRNA-1:exon:20573;Parent=Msa0619480-mRNA-1
chr4_2 exon 70580413 70580498 70580413 ID=Msa0619480-mRNA-1:exon:20574;Parent=Msa0619480-mRNA-1
chr4_2 exon 70580600 70581017 70580600 ID=Msa0619480-mRNA-1:exon:20575;Parent=Msa0619480-mRNA-1
chr4_2 exon 70581112 70581212 70581112 ID=Msa0619480-mRNA-1:exon:20576;Parent=Msa0619480-mRNA-1
chr4_2 exon 70581335 70581401 70581335 ID=Msa0619480-mRNA-1:exon:20577;Parent=Msa0619480-mRNA-1
chr4_2 exon 70581619 70581846 70581619 ID=Msa0619480-mRNA-1:exon:20578;Parent=Msa0619480-mRNA-1
chr4_2 exon 70582110 70582568 70582110 ID=Msa0619480-mRNA-1:exon:20579;Parent=Msa0619480-mRNA-1
chr4_2 exon 70582750 70582822 70582750 ID=Msa0619480-mRNA-1:exon:20580;Parent=Msa0619480-mRNA-1
chr4_2 exon 70582971 70583687 70582971 ID=Msa0619480-mRNA-1:exon:20581;Parent=Msa0619480-mRNA-1
chr4_2 five_prime_UTR 70579209 70580012 70579209 ID=Msa0619480-mRNA-1:five_prime_utr;Parent=Msa0619480-mRNA-1
chr4_2 CDS 70580013 70580156 70580013 ID=Msa0619480-mRNA-1:cds;Parent=Msa0619480-mRNA-1
chr4_2 CDS 70580413 70580498 70580413 ID=Msa0619480-mRNA-1:cds;Parent=Msa0619480-mRNA-1
chr4_2 CDS 70580600 70581017 70580600 ID=Msa0619480-mRNA-1:cds;Parent=Msa0619480-mRNA-1
chr4_2 CDS 70581112 70581212 70581112 ID=Msa0619480-mRNA-1:cds;Parent=Msa0619480-mRNA-1
chr4_2 CDS 70581335 70581401 70581335 ID=Msa0619480-mRNA-1:cds;Parent=Msa0619480-mRNA-1
chr4_2 CDS 70581619 70581846 70581619 ID=Msa0619480-mRNA-1:cds;Parent=Msa0619480-mRNA-1
chr4_2 CDS 70582110 70582568 70582110 ID=Msa0619480-mRNA-1:cds;Parent=Msa0619480-mRNA-1
chr4_2 CDS 70582750 70582822 70582750 ID=Msa0619480-mRNA-1:cds;Parent=Msa0619480-mRNA-1
chr4_2 CDS 70582971 70583221 70582971 ID=Msa0619480-mRNA-1:cds;Parent=Msa0619480-mRNA-1
chr4_2 three_prime_UTR 70583222 70583687 70583222 ID=Msa0619480-mRNA-1:three_prime_utr;Parent=Msa0619480-mRNA-1
Gene Sequence

>Msa0619480

ATGAGAGTTGTTTTTGTTTTTAGTGGGCGTATTCCTTGCCCATTTCCTGGAAGGATATGGTTAGAGCAAAGAGGATCTCAAAGGGCAATGTATTGGCACATTGAAGCTCGTGTTGTTTTGGATCTTCAAGAATTCCTCAATTCTGAATGGGATCGAGAACTTCATTTTTCAATGGTTGATGGAGACTTTAAGAAGTTTGAGGGAAAATGGTCTGTAAAATCTGGAACAAGGTCATCATCAACTAATTTATCTTATGAGGTTAATGTGATACCAAGATTCAATTTCCCAGCTATTTTCTTGGAAAGGATTGTCAGATCGGATCTTCCTGTGAATCTACGAGCCTTAGCATATAGAGTTGAAAGGAATCTTTTGGGGAATCAGAAACTTCCCCAGCCAGAAGACGACTTGCATAAAACTTCTTTGGTTGTTAATGGATCTTCTGTCAAAAAGATAAATGGTTCTTTATGTGAAACCGACAAATTGGCACCTGGTCAGGATAAAGAAGGTTTGGACACTTCAATTTCCGGTTCATTGCCTGCGTCTTCCAGTGAGTTAAACAGCAATTGGGGTATATTTGGAAAAGTTTGTAGCCTTGACAAGCCTTGTGTTGTAGATGAAGTTCATCTCCGCAGATTTGATGGACTTTTGGAAAATGGAGGTGTTCATCGTTGTGTCGTTGCAAGCATAACAGTTAAAGCTCCTGTTCGTGATGTATGGAATGTTATGTCTTCGTATGAGACTCTTCCTGAGATAGTTCCAAATTTAGCAATCAGTAAGATTTTATCACGAGATAACAATAAAGTCCGCATTCTTCAGGAAGGGTGTAAAGGCCTGCTTTATATGGTGCTTCATGCTCGTGTGGTGTTAGATTTGTGTGAACAGCTAGAACAAGAGATCAGTTTTGAACAGGCTGAAGGTGACTTCGACTCATTCCATGGAAAATGGACGTTTGAGCAACTAGGAAATCATCACACACTGCTAAAGTACTCTGTGGACTCGAAAATGCGCAGAGATACGTTCCTTTCTGAAGCTATCATGGAAGAGGTCATTTATGAAGATCTGCCATCAAACTTGTGTGCAATAAGAGACTACGTTGAGAACCGGAAAGCATCACAATTTCCTGAAGTTTGTGAGCAGAATACGAATTCAGAACAACAAATTATATCATCTGGCTCTGGAGATGATAGCAACTCTAGTTCAGCTGATGATTTTTCTGATTGTAATGTTCAAAGCTCATCTAATCAAAGGTCAAGAGTTCCGGGACTACAGAGGGATATTGAAGTCCTAAAATCTGAACTCCTGAAATTTGTTGCTGAATATGGTCAGGAAGGGTTTATGCCTATGAGGAAGCAGCTTCGGCTGCATGGAAGAGTGGATATTGAGAAGGCTATAACTCGCATGGGTGGATTCAGAAAGATTGCAACCATAATGAACCTCTCTCTAGCTTACAAATACCGCAAACCAAAGGGTTACTGGGACAATCTTGAAAATTTGCAGGACGAGATAAGTAGATTTCAGAGATGCTGGGGGATGGACCCATCATTTATGCCCAGTAGAAAGTCATTTGAACGAGTTGGCCGCTTTGATATTGCACGGGCGCTGGAAAAGTGGGGTGGACTTCATGAGGTTTCTCGCCTTCTATCTCTCAAGGCAAGGAGAAAAAGAACCAGACAGGACAACAACCTTGGCAAGGATAAGAAAAATGATCACCGAGAATCAGCAGATGTAGATAGTGAGATCAATGCAGCATCTAGACCTTATATTTCTCAAGACACACACAAGTGGCATACAGAACTAAAAGAGTTGGACATAAATTGGGTTGAGTAA
Protein sequence

>Msa0619480

MRVVFVFSGRIPCPFPGRIWLEQRGSQRAMYWHIEARVVLDLQEFLNSEWDRELHFSMVDGDFKKFEGKWSVKSGTRSSSTNLSYEVNVIPRFNFPAIFLERIVRSDLPVNLRALAYRVERNLLGNQKLPQPEDDLHKTSLVVNGSSVKKINGSLCETDKLAPGQDKEGLDTSISGSLPASSSELNSNWGIFGKVCSLDKPCVVDEVHLRRFDGLLENGGVHRCVVASITVKAPVRDVWNVMSSYETLPEIVPNLAISKILSRDNNKVRILQEGCKGLLYMVLHARVVLDLCEQLEQEISFEQAEGDFDSFHGKWTFEQLGNHHTLLKYSVDSKMRRDTFLSEAIMEEVIYEDLPSNLCAIRDYVENRKASQFPEVCEQNTNSEQQIISSGSGDDSNSSSADDFSDCNVQSSSNQRSRVPGLQRDIEVLKSELLKFVAEYGQEGFMPMRKQLRLHGRVDIEKAITRMGGFRKIATIMNLSLAYKYRKPKGYWDNLENLQDEISRFQRCWGMDPSFMPSRKSFERVGRFDIARALEKWGGLHEVSRLLSLKARRKRTRQDNNLGKDKKNDHRESADVDSEINAASRPYISQDTHKWHTELKELDINWVE*