AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0855490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0855490 MtrunA17_Chr5g0433601 94.776 402 8 1 1 402 1 389 0.0 778
Msa0855490 MtrunA17_Chr3g0095661 69.162 334 81 3 77 406 37 352 5.07e-164 466
Msa0855490 MtrunA17_Chr5g0442671 70.253 316 77 3 94 406 44 345 1.48e-159 454
Msa0855490 MtrunA17_Chr3g0121311 68.571 245 77 0 138 382 86 330 2.04e-128 375
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0855490 AT5G17230.2 68.504 381 100 6 2 379 4 367 0.0 516
Msa0855490 AT5G17230.1 68.504 381 100 6 2 379 4 367 0.0 516
Msa0855490 AT5G17230.4 68.504 381 100 6 2 379 4 367 0.0 516
Msa0855490 AT5G17230.3 65.909 396 100 7 2 379 4 382 1.59e-179 507

Find 129 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTATTTCGTCCAATATT+TGG 0.167703 5_4:-48815808 None:intergenic
TTCCATTTCATTCTACAAAA+AGG 0.169857 5_4:+48811782 Msa0855490:five_prime_UTR
ATGGTTTACTCGATTCTTTC+GGG 0.180449 5_4:+48812815 Msa0855490:CDS
CCTTCTATCATATCTTTAAA+TGG 0.198005 5_4:-48814419 None:intergenic
TCATGTCTGTGACATTATTA+AGG 0.208507 5_4:+48812755 Msa0855490:exon
TTCCCAGGCAAAACAATTTC+CGG 0.216388 5_4:-48813141 None:intergenic
CCGAAAGGCGAAGAGCTATT+TGG 0.218249 5_4:+48813354 Msa0855490:CDS
CTGTTGAAATTCTTTGTATA+AGG 0.233359 5_4:-48811756 None:intergenic
CAAATAGCTCTTCGCCTTTC+GGG 0.241550 5_4:-48813353 None:intergenic
TTTCTATGAAGAGAGTTTAA+TGG 0.242220 5_4:+48812650 Msa0855490:five_prime_UTR
TCATGAAGAGCCAAATTAAA+AGG 0.246269 5_4:+48814966 Msa0855490:CDS
CCAAATAGCTCTTCGCCTTT+CGG 0.257174 5_4:-48813354 None:intergenic
GCTATTATATCGCCAAATAT+TGG 0.289265 5_4:+48815796 Msa0855490:three_prime_UTR
AGTAATCATTAAATAACTTC+TGG 0.290242 5_4:+48815258 Msa0855490:three_prime_UTR
AATGGTTTACTCGATTCTTT+CGG 0.291645 5_4:+48812814 Msa0855490:CDS
TGCTTCCTCTCCTAGCTTAG+AGG 0.306439 5_4:+48812780 Msa0855490:CDS
AGGATTCATATTTGAGGAAT+AGG 0.311849 5_4:+48812681 Msa0855490:five_prime_UTR
TCAAACTCTTATTATTGAAT+TGG 0.316393 5_4:+48815717 Msa0855490:three_prime_UTR
TTAATCACAGTTAGCTTTGC+TGG 0.322087 5_4:+48812545 Msa0855490:intron
TGGTAAAGAAAGTAACTTCT+TGG 0.327130 5_4:-48815876 None:intergenic
TAATAATGACAAACACAAAA+AGG 0.333895 5_4:+48815982 Msa0855490:three_prime_UTR
CGAAAGGCGAAGAGCTATTT+GGG 0.347088 5_4:+48813355 Msa0855490:CDS
TTGTATTCATTAGTCAATAT+TGG 0.349096 5_4:+48816037 Msa0855490:three_prime_UTR
CTCTACTGTTACTATGTTGC+TGG 0.359851 5_4:+48814494 Msa0855490:CDS
CTTTAATCCAATAAAATCCT+TGG 0.360652 5_4:-48812582 None:intergenic
CCACTTGTCTGTCACCTTAC+CGG 0.360789 5_4:-48814936 None:intergenic
GCTGTAATATGTGAAGCATT+AGG 0.366470 5_4:-48813901 None:intergenic
CATGTCTGTGACATTATTAA+GGG 0.371237 5_4:+48812756 Msa0855490:exon
AGATGACACAATGCAAAGTA+TGG 0.371885 5_4:+48811662 Msa0855490:five_prime_UTR
GGTTCTGAAGCAGGCGTCTT+TGG 0.372578 5_4:+48813077 Msa0855490:CDS
TCAGATGACGACATATTTGC+CGG 0.386677 5_4:+48814917 Msa0855490:CDS
ACTTGCATATGCTAGATCTA+TGG 0.394076 5_4:+48815898 Msa0855490:three_prime_UTR
CAGAAGAGTGGAGAATTTAG+TGG 0.394775 5_4:+48811869 Msa0855490:five_prime_UTR
TATATGTAAGTGTGTATAGA+TGG 0.395073 5_4:+48815125 Msa0855490:CDS
CTGTAATATGTGAAGCATTA+GGG 0.396810 5_4:-48813900 None:intergenic
TGAGGAATAGGAGGAAGTTA+AGG 0.400399 5_4:+48812693 Msa0855490:five_prime_UTR
TGTTTGGTTGAATTTCTTAC+CGG 0.401442 5_4:-48815052 None:intergenic
GTATCTACCACAAGATGAAT+TGG 0.407019 5_4:+48814880 Msa0855490:CDS
AGAGCTATTTGGGCAATATA+TGG 0.408215 5_4:+48813365 Msa0855490:CDS
TGTGACGCAAAAGGGTGTTT+TGG 0.415780 5_4:+48815750 Msa0855490:three_prime_UTR
GTAATCATTAAATAACTTCT+GGG 0.417253 5_4:+48815259 Msa0855490:three_prime_UTR
CAGATTTCCTGTTGATATCC+AGG 0.418869 5_4:+48814017 Msa0855490:CDS
ATCAATACCTGGATATCAAC+AGG 0.418894 5_4:-48814024 None:intergenic
ATTATACAAAACCTTCTTTG+TGG 0.419373 5_4:+48815077 Msa0855490:CDS
TAAAGCAAGTTTCTTTGCAT+TGG 0.430236 5_4:+48812600 Msa0855490:five_prime_UTR
CAAGATGAATTGGCTCTGGC+AGG 0.432002 5_4:+48814890 Msa0855490:CDS
AGCAGGCGTCTTTGGTTAAG+AGG 0.432850 5_4:+48813085 Msa0855490:CDS
ATCGAGTAAACCATTGGAAC+AGG 0.435907 5_4:-48812806 None:intergenic
ATTACAACAATTTCACTAAG+AGG 0.435955 5_4:+48815837 Msa0855490:three_prime_UTR
CCATTTAAAGATATGATAGA+AGG 0.449064 5_4:+48814419 Msa0855490:CDS
TTATGATGTGGTTCTGAAGC+AGG 0.451633 5_4:+48813068 Msa0855490:CDS
CGGTGAACTTGAAGTGAAAC+CGG 0.459098 5_4:+48813122 Msa0855490:CDS
TACTATGTTGCTGGAACTGT+TGG 0.460078 5_4:+48814503 Msa0855490:CDS
TACAATGCTGCCTTGGCCTT+AGG 0.462846 5_4:+48814587 Msa0855490:CDS
TATGATAGAAGGAATGAGAA+TGG 0.470612 5_4:+48814430 Msa0855490:CDS
GGATAGGTGGGAATCAAGAT+TGG 0.482924 5_4:+48813933 Msa0855490:CDS
GCAGCATCAAGCATATCAAA+TGG 0.485476 5_4:-48813976 None:intergenic
TATGCATGTGTTGGTCAGCC+TGG 0.487165 5_4:+48812955 Msa0855490:CDS
TTTGAAACTTGACCAATGTA+TGG 0.488843 5_4:-48811732 None:intergenic
TTTAATGAGTGTTCCCGTCA+TGG 0.489200 5_4:+48814526 Msa0855490:CDS
TTAGAGGTCTCCTGTTCCAA+TGG 0.489235 5_4:+48812796 Msa0855490:CDS
GGCTGTTTCGTCTGAGCAGA+AGG 0.495434 5_4:+48813044 Msa0855490:CDS
TTCAGTGTGGTGTAGGAGGA+CGG 0.496266 5_4:+48813861 Msa0855490:intron
TTCTCAAGGATTCATATTTG+AGG 0.496451 5_4:+48812675 Msa0855490:five_prime_UTR
AAGAGGAAGCTGAGCTCTAC+CGG 0.500218 5_4:+48813102 Msa0855490:CDS
TGCGTTGAAATGCCCATGAC+GGG 0.505460 5_4:-48814539 None:intergenic
TAGCTGATTTGCAATTCCTA+AGG 0.507538 5_4:-48814603 None:intergenic
GCATATCAAATGGACGCCCT+TGG 0.512063 5_4:-48813966 None:intergenic
CAGCCACTTCTCCTGCAGTC+GGG 0.512372 5_4:-48813026 None:intergenic
GAAAACTTCAGCCACAAAGA+AGG 0.513579 5_4:-48815088 None:intergenic
AGGACGGATGAACTTGTTGA+TGG 0.515418 5_4:+48813877 Msa0855490:CDS
ACCACAAGATGAATTGGCTC+TGG 0.516944 5_4:+48814886 Msa0855490:CDS
CATGAAGAGCCAAATTAAAA+GGG 0.517837 5_4:+48814967 Msa0855490:CDS
CGGTTTCACTTCAAGTTCAC+CGG 0.518111 5_4:-48813121 None:intergenic
ATTCATATTTGAGGAATAGG+AGG 0.519785 5_4:+48812684 Msa0855490:five_prime_UTR
TTAATGAGTGTTCCCGTCAT+GGG 0.520513 5_4:+48814527 Msa0855490:CDS
ATTTGTTATGCTCTTATGTG+TGG 0.525924 5_4:+48815557 Msa0855490:three_prime_UTR
TGACGACATATTTGCCGGTA+AGG 0.527146 5_4:+48814922 Msa0855490:CDS
ATTTCATCATATACAAAATG+TGG 0.527430 5_4:-48816009 None:intergenic
TTACAACAATTTCACTAAGA+GGG 0.529341 5_4:+48815838 Msa0855490:three_prime_UTR
AGTTAGCTTTGCTGGAAAAG+TGG 0.531406 5_4:+48812553 Msa0855490:intron
GTGCTCGCGAACCCGACTGC+AGG 0.534982 5_4:+48813015 Msa0855490:CDS
ACCAACATACTCAGAGATGT+TGG 0.536889 5_4:+48814626 Msa0855490:CDS
CAGCAACTGCAATGGATAGG+TGG 0.537534 5_4:+48813920 Msa0855490:CDS
GAAAGAATCGAGTAAACCAT+TGG 0.540066 5_4:-48812812 None:intergenic
TTGCTAGCACTCTCTAAGCC+AGG 0.549483 5_4:-48812973 None:intergenic
GAAGTTAAGGTTAGCTAACA+AGG 0.554021 5_4:+48812706 Msa0855490:five_prime_UTR
CTCAACAAACTCAAATTCCC+AGG 0.554708 5_4:-48813156 None:intergenic
AGCAACTGCAATGGATAGGT+GGG 0.555214 5_4:+48813921 Msa0855490:CDS
GATATTAAGTATGCATGTGT+TGG 0.555318 5_4:+48812946 Msa0855490:CDS
TAGATACACTCTTCCTCGCC+TGG 0.558995 5_4:-48814864 None:intergenic
CGAGCACATTCGATAACAAA+GGG 0.559386 5_4:-48812999 None:intergenic
ATTTGCAATTCCTAAGGCCA+AGG 0.562166 5_4:-48814597 None:intergenic
ACAGCCACTTCTCCTGCAGT+CGG 0.565483 5_4:-48813027 None:intergenic
AGTGGGTCATATTATTCATG+AGG 0.576517 5_4:+48811887 Msa0855490:five_prime_UTR
GAGTGTGTACAATGCTGCCT+TGG 0.577004 5_4:+48814580 Msa0855490:CDS
CAATGAACAGAGCAGATGGC+CGG 0.577565 5_4:+48815033 Msa0855490:CDS
AGAAGAGTGGAGAATTTAGT+GGG 0.579593 5_4:+48811870 Msa0855490:five_prime_UTR
GCCAGAGCCAATTCATCTTG+TGG 0.580658 5_4:-48814887 None:intergenic
TCCAACATCTCTGAGTATGT+TGG 0.584691 5_4:-48814627 None:intergenic
AGCTCAATGAACAGAGCAGA+TGG 0.586885 5_4:+48815029 Msa0855490:CDS
TTACAGCAACTGCAATGGAT+AGG 0.587244 5_4:+48813917 Msa0855490:CDS
ACATATTACAGCAACTGCAA+TGG 0.587371 5_4:+48813912 Msa0855490:CDS
AAGATGAATTGGCTCTGGCA+GGG 0.589323 5_4:+48814891 Msa0855490:CDS
ATCAACAGGAAATCTGTTGA+CGG 0.589513 5_4:-48814010 None:intergenic
GAACAGGAGACCTCTAAGCT+AGG 0.592655 5_4:-48812790 None:intergenic
ATGCGTTGAAATGCCCATGA+CGG 0.599114 5_4:-48814540 None:intergenic
GAACCCGACTGCAGGAGAAG+TGG 0.603987 5_4:+48813023 Msa0855490:CDS
TGAGCAGAAGGTTTATGATG+TGG 0.604299 5_4:+48813056 Msa0855490:CDS
ACAAGCAAACTTCAGAAGAG+TGG 0.605748 5_4:+48811857 Msa0855490:five_prime_UTR
TGGTTTACTCGATTCTTTCG+GGG 0.606852 5_4:+48812816 Msa0855490:CDS
TTCATCATTTAACTTTAACA+TGG 0.608074 5_4:+48815630 Msa0855490:three_prime_UTR
TGAGGCAGAAAAGGGAGTGA+CGG 0.617889 5_4:+48815006 Msa0855490:CDS
ATTGTACACACTCTCTGTTG+TGG 0.620184 5_4:-48814570 None:intergenic
CCGGTAAGGTGACAGACAAG+TGG 0.621228 5_4:+48814936 Msa0855490:CDS
GCGAGCACATTCGATAACAA+AGG 0.625781 5_4:-48813000 None:intergenic
CTCTTCTAATGACTCCCGAA+AGG 0.631131 5_4:+48813339 Msa0855490:CDS
GTTTGAACTTGTAACCTCGA+GGG 0.633592 5_4:-48815700 None:intergenic
TTTCCTAACAGTGCCAGGCG+AGG 0.637716 5_4:+48814851 Msa0855490:intron
AGTGAAGCATATGATAGATG+TGG 0.638875 5_4:+48813177 Msa0855490:CDS
TGGAACTCACAACCATACAT+TGG 0.648155 5_4:+48811720 Msa0855490:five_prime_UTR
AGTTTGAACTTGTAACCTCG+AGG 0.650011 5_4:-48815701 None:intergenic
GATTTGAATTTCATCCCTCG+AGG 0.653966 5_4:+48815686 Msa0855490:three_prime_UTR
ATAGATCTAGCATATGCAAG+TGG 0.656749 5_4:-48815896 None:intergenic
GGAGACCTCTAAGCTAGGAG+AGG 0.657505 5_4:-48812785 None:intergenic
AACTTGATAACACAATCGTG+TGG 0.658339 5_4:+48811700 Msa0855490:five_prime_UTR
CATACTCAGAGATGTTGGAG+AGG 0.697210 5_4:+48814631 Msa0855490:CDS
GTAAGGTGACAGACAAGTGG+AGG 0.698008 5_4:+48814939 Msa0855490:CDS
GTTAAGGTTAGCTAACAAGG+AGG 0.721110 5_4:+48812709 Msa0855490:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAATAAAAAAATTACAT+TGG - chr5_4:48812257-48812276 None:intergenic 10.0%
!! AAAAAAAAATAAATAACTTC+TGG + chr5_4:48815292-48815311 Msa0855490:three_prime_UTR 10.0%
!! AAAAAAAATAAATAACTTCT+GGG + chr5_4:48815293-48815312 Msa0855490:three_prime_UTR 10.0%
!!! TAAATTACTAATCTTTTTAG+TGG + chr5_4:48811919-48811938 Msa0855490:intron 15.0%
!! CTAATAAGTTCTTAATTTAA+AGG + chr5_4:48812146-48812165 Msa0855490:intron 15.0%
!!! GATTATGATAACAAATATTT+TGG + chr5_4:48813419-48813438 Msa0855490:intron 15.0%
!!! TTTAAAATAACTTACATACA+TGG + chr5_4:48813585-48813604 Msa0855490:intron 15.0%
!!! AAATTGATCTTTATTTATGT+AGG - chr5_4:48813762-48813781 None:intergenic 15.0%
!! TTTCATGTATATATCTAATT+TGG - chr5_4:48814062-48814081 None:intergenic 15.0%
!! AATCTATGTAAAAAAAACTT+AGG - chr5_4:48814742-48814761 None:intergenic 15.0%
!! TAGATTAAGAAATATAATGT+TGG + chr5_4:48814756-48814775 Msa0855490:intron 15.0%
!! GATATAGTTATTTAGAAAAA+TGG + chr5_4:48815959-48815978 Msa0855490:three_prime_UTR 15.0%
!!! ATTTTGTATATGATGAAATA+AGG + chr5_4:48816013-48816032 Msa0855490:three_prime_UTR 15.0%
!!! TGAAATTTTATTGTTTGTGT+TGG + chr5_4:48812521-48812540 Msa0855490:intron 20.0%
!! AAAATGATAAGAAAAAGACA+CGG + chr5_4:48812902-48812921 Msa0855490:CDS 20.0%
!!! ATATGCTAAAACATTTTACT+TGG + chr5_4:48813215-48813234 Msa0855490:CDS 20.0%
!!! TATGCTAAAACATTTTACTT+GGG + chr5_4:48813216-48813235 Msa0855490:CDS 20.0%
!!! TGTTAATTATTTCAGTTTTG+TGG + chr5_4:48813272-48813291 Msa0855490:intron 20.0%
!!! TAAATTTGCTAAGTTTTCAA+GGG + chr5_4:48813478-48813497 Msa0855490:intron 20.0%
!!! TTCTTTTAGACAACAAAAAT+TGG + chr5_4:48813653-48813672 Msa0855490:intron 20.0%
!! TTATATCTGAGGAAAAAAAA+TGG + chr5_4:48814263-48814282 Msa0855490:intron 20.0%
!! AGTAATCATTAAATAACTTC+TGG + chr5_4:48815258-48815277 Msa0855490:three_prime_UTR 20.0%
!! GTAATCATTAAATAACTTCT+GGG + chr5_4:48815259-48815278 Msa0855490:three_prime_UTR 20.0%
!!! TTCATCATTTAACTTTAACA+TGG + chr5_4:48815630-48815649 Msa0855490:three_prime_UTR 20.0%
!! TCAAACTCTTATTATTGAAT+TGG + chr5_4:48815717-48815736 Msa0855490:three_prime_UTR 20.0%
!! TAATAATGACAAACACAAAA+AGG + chr5_4:48815982-48816001 Msa0855490:three_prime_UTR 20.0%
!! ATTTCATCATATACAAAATG+TGG - chr5_4:48816012-48816031 None:intergenic 20.0%
!! TTGTATTCATTAGTCAATAT+TGG + chr5_4:48816037-48816056 Msa0855490:three_prime_UTR 20.0%
! CTGTTGAAATTCTTTGTATA+AGG - chr5_4:48811759-48811778 None:intergenic 25.0%
!! TTTTGTAGAATGAAATGGAA+TGG - chr5_4:48811782-48811801 None:intergenic 25.0%
! TTCCATTTCATTCTACAAAA+AGG + chr5_4:48811782-48811801 Msa0855490:five_prime_UTR 25.0%
! TCCATTTCATTCTACAAAAA+GGG + chr5_4:48811783-48811802 Msa0855490:five_prime_UTR 25.0%
! TCGTACATATGTTCAATTAA+TGG + chr5_4:48811977-48811996 Msa0855490:intron 25.0%
! CTTTAATCCAATAAAATCCT+TGG - chr5_4:48812585-48812604 None:intergenic 25.0%
! TTTCTATGAAGAGAGTTTAA+TGG + chr5_4:48812650-48812669 Msa0855490:five_prime_UTR 25.0%
! TATTATCTTTCCTTAAAGTG+AGG + chr5_4:48813248-48813267 Msa0855490:intron 25.0%
! TAATTAACATCCTCACTTTA+AGG - chr5_4:48813261-48813280 None:intergenic 25.0%
!!! GTAAATTTGCTAAGTTTTCA+AGG + chr5_4:48813477-48813496 Msa0855490:intron 25.0%
! AAAATGAACTTAGTACATGA+CGG - chr5_4:48813719-48813738 None:intergenic 25.0%
! GTATATTTGACATCTGATTA+GGG - chr5_4:48813785-48813804 None:intergenic 25.0%
! TGTATATTTGACATCTGATT+AGG - chr5_4:48813786-48813805 None:intergenic 25.0%
!! TCCTCTAAACTTTAGAAAAT+AGG + chr5_4:48813820-48813839 Msa0855490:intron 25.0%
!! CCTCTAAACTTTAGAAAATA+GGG + chr5_4:48813821-48813840 Msa0855490:intron 25.0%
! GAACAAAATTAATCAATACC+TGG - chr5_4:48814038-48814057 None:intergenic 25.0%
! GTAGAAAACAACATTAAAGA+TGG - chr5_4:48814086-48814105 None:intergenic 25.0%
!!! AATGTTGTTTTCTACTTGAA+AGG + chr5_4:48814091-48814110 Msa0855490:intron 25.0%
! TCCACAAAATCATTATATGT+GGG - chr5_4:48814175-48814194 None:intergenic 25.0%
! TTCCACAAAATCATTATATG+TGG - chr5_4:48814176-48814195 None:intergenic 25.0%
!! TTTTTCTAATGACACATGTT+CGG - chr5_4:48814310-48814329 None:intergenic 25.0%
! ATCGACAAAAACAAAAGATT+AGG - chr5_4:48814395-48814414 None:intergenic 25.0%
! CCTTCTATCATATCTTTAAA+TGG - chr5_4:48814422-48814441 None:intergenic 25.0%
! CCATTTAAAGATATGATAGA+AGG + chr5_4:48814419-48814438 Msa0855490:CDS 25.0%
!!! AGGTTTTGTATAATGATGTT+TGG - chr5_4:48815071-48815090 None:intergenic 25.0%
! ATTATACAAAACCTTCTTTG+TGG + chr5_4:48815077-48815096 Msa0855490:CDS 25.0%
! TATATGTAAGTGTGTATAGA+TGG + chr5_4:48815125-48815144 Msa0855490:CDS 25.0%
! ATTACAACAATTTCACTAAG+AGG + chr5_4:48815837-48815856 Msa0855490:three_prime_UTR 25.0%
! TTACAACAATTTCACTAAGA+GGG + chr5_4:48815838-48815857 Msa0855490:three_prime_UTR 25.0%
!!! ACATGAGATAACTTTTTTGA+TGG - chr5_4:48815929-48815948 None:intergenic 25.0%
! TTTGAAACTTGACCAATGTA+TGG - chr5_4:48811735-48811754 None:intergenic 30.0%
! ACCCTTTTTGTAGAATGAAA+TGG - chr5_4:48811787-48811806 None:intergenic 30.0%
TAATGGCAAATTCATCTAAG+TGG + chr5_4:48811994-48812013 Msa0855490:intron 30.0%
AATGGCAAATTCATCTAAGT+GGG + chr5_4:48811995-48812014 Msa0855490:intron 30.0%
CACAGAAAAACAACTTTGTT+GGG - chr5_4:48812046-48812065 None:intergenic 30.0%
TTCAACTAACCACAAAAATG+AGG - chr5_4:48812104-48812123 None:intergenic 30.0%
!! TTAGTACTGATAAAGCTACA+CGG - chr5_4:48812130-48812149 None:intergenic 30.0%
ACCAAAAAAAACACACAATG+GGG - chr5_4:48812304-48812323 None:intergenic 30.0%
GACCAAAAAAAACACACAAT+GGG - chr5_4:48812305-48812324 None:intergenic 30.0%
TGACCAAAAAAAACACACAA+TGG - chr5_4:48812306-48812325 None:intergenic 30.0%
!!! TTGTGTGTTTTTTTTGGTCA+TGG + chr5_4:48812306-48812325 Msa0855490:intron 30.0%
!!! TTGGTCATGGTTTTAAATTG+CGG + chr5_4:48812319-48812338 Msa0855490:intron 30.0%
! CGGCAATATAAAAGATTTTG+AGG - chr5_4:48812407-48812426 None:intergenic 30.0%
! GTGTTTTCCAAGGATTTTAT+TGG + chr5_4:48812575-48812594 Msa0855490:five_prime_UTR 30.0%
TAAAGCAAGTTTCTTTGCAT+TGG + chr5_4:48812600-48812619 Msa0855490:five_prime_UTR 30.0%
! GTTTGCTTGTGTTTTCAATT+GGG + chr5_4:48812622-48812641 Msa0855490:five_prime_UTR 30.0%
! AGAGTTTAATGGTTTTCTCA+AGG + chr5_4:48812661-48812680 Msa0855490:five_prime_UTR 30.0%
TTCTCAAGGATTCATATTTG+AGG + chr5_4:48812675-48812694 Msa0855490:five_prime_UTR 30.0%
AGGATTCATATTTGAGGAAT+AGG + chr5_4:48812681-48812700 Msa0855490:five_prime_UTR 30.0%
ATTCATATTTGAGGAATAGG+AGG + chr5_4:48812684-48812703 Msa0855490:five_prime_UTR 30.0%
!! GACTAAACTTTTGTTGTGTT+AGG - chr5_4:48812737-48812756 None:intergenic 30.0%
TCATGTCTGTGACATTATTA+AGG + chr5_4:48812755-48812774 Msa0855490:exon 30.0%
CATGTCTGTGACATTATTAA+GGG + chr5_4:48812756-48812775 Msa0855490:exon 30.0%
AATGGTTTACTCGATTCTTT+CGG + chr5_4:48812814-48812833 Msa0855490:CDS 30.0%
GATATTAAGTATGCATGTGT+TGG + chr5_4:48812946-48812965 Msa0855490:CDS 30.0%
! TGAGTTGAGTCAATTTGTAT+TGG + chr5_4:48813297-48813316 Msa0855490:intron 30.0%
GAGTTGAGTCAATTTGTATT+GGG + chr5_4:48813298-48813317 Msa0855490:intron 30.0%
!!! TATTGGGTTTTTTTTCTCTC+AGG + chr5_4:48813314-48813333 Msa0855490:intron 30.0%
!!! CCCTATTTTCTAAAGTTTAG+AGG - chr5_4:48813824-48813843 None:intergenic 30.0%
! CTGTAATATGTGAAGCATTA+GGG - chr5_4:48813903-48813922 None:intergenic 30.0%
CCACAAAATCATTATATGTG+GGG - chr5_4:48814174-48814193 None:intergenic 30.0%
TGCAAAGAACATTATATCTG+AGG + chr5_4:48814252-48814271 Msa0855490:intron 30.0%
TATGATAGAAGGAATGAGAA+TGG + chr5_4:48814430-48814449 Msa0855490:CDS 30.0%
GAAATGAAGTGAACAAACAT+CGG - chr5_4:48814673-48814692 None:intergenic 30.0%
ACTTAGGACGAAAGTTATTA+TGG - chr5_4:48814726-48814745 None:intergenic 30.0%
! ATTGTTTAGTTTAGCAACAG+AGG - chr5_4:48814787-48814806 None:intergenic 30.0%
GGAAAATTGAGCATATGATA+AGG - chr5_4:48814836-48814855 None:intergenic 30.0%
TCATGAAGAGCCAAATTAAA+AGG + chr5_4:48814966-48814985 Msa0855490:CDS 30.0%
CATGAAGAGCCAAATTAAAA+GGG + chr5_4:48814967-48814986 Msa0855490:CDS 30.0%
!!! TTTTTTGATGAGGCAGAAAA+GGG + chr5_4:48814998-48815017 Msa0855490:CDS 30.0%
TGTTTGGTTGAATTTCTTAC+CGG - chr5_4:48815055-48815074 None:intergenic 30.0%
!! ATTTGTTATGCTCTTATGTG+TGG + chr5_4:48815557-48815576 Msa0855490:three_prime_UTR 30.0%
!! ATTTTAGTATGTGACGCAAA+AGG + chr5_4:48815741-48815760 Msa0855490:three_prime_UTR 30.0%
! TTTTAGTATGTGACGCAAAA+GGG + chr5_4:48815742-48815761 Msa0855490:three_prime_UTR 30.0%
GCTATTATATCGCCAAATAT+TGG + chr5_4:48815796-48815815 Msa0855490:three_prime_UTR 30.0%
CTTCTATTTCGTCCAATATT+TGG - chr5_4:48815811-48815830 None:intergenic 30.0%
TGGTAAAGAAAGTAACTTCT+TGG - chr5_4:48815879-48815898 None:intergenic 30.0%
!!! TGAGATAACTTTTTTGATGG+AGG - chr5_4:48815926-48815945 None:intergenic 30.0%
AGATGACACAATGCAAAGTA+TGG + chr5_4:48811662-48811681 Msa0855490:five_prime_UTR 35.0%
! AACTTGATAACACAATCGTG+TGG + chr5_4:48811700-48811719 Msa0855490:five_prime_UTR 35.0%
AGAAGAGTGGAGAATTTAGT+GGG + chr5_4:48811870-48811889 Msa0855490:five_prime_UTR 35.0%
AGTGGGTCATATTATTCATG+AGG + chr5_4:48811887-48811906 Msa0855490:five_prime_UTR 35.0%
CATGGAGCAAAAACTAACAA+TGG - chr5_4:48811945-48811964 None:intergenic 35.0%
GTACGAAAACATCAACATCA+TGG - chr5_4:48811963-48811982 None:intergenic 35.0%
ACAACTTTGTTGGGTGTTAA+TGG - chr5_4:48812037-48812056 None:intergenic 35.0%
GCACAGAAAAACAACTTTGT+TGG - chr5_4:48812047-48812066 None:intergenic 35.0%
CAAAAATGAGGAAGTAGTAG+TGG - chr5_4:48812092-48812111 None:intergenic 35.0%
!! CTACTACTTCCTCATTTTTG+TGG + chr5_4:48812092-48812111 Msa0855490:intron 35.0%
!!! TCCCCATTGTGTGTTTTTTT+TGG + chr5_4:48812300-48812319 Msa0855490:intron 35.0%
AGAATCATGGTTTCAAACTG+TGG - chr5_4:48812431-48812450 None:intergenic 35.0%
TCATCACACAACAAGAATCA+TGG - chr5_4:48812444-48812463 None:intergenic 35.0%
!! TTAATCACAGTTAGCTTTGC+TGG + chr5_4:48812545-48812564 Msa0855490:intron 35.0%
!! GGTTTGCTTGTGTTTTCAAT+TGG + chr5_4:48812621-48812640 Msa0855490:five_prime_UTR 35.0%
! GAAGTTAAGGTTAGCTAACA+AGG + chr5_4:48812706-48812725 Msa0855490:five_prime_UTR 35.0%
GAAAGAATCGAGTAAACCAT+TGG - chr5_4:48812815-48812834 None:intergenic 35.0%
ATGGTTTACTCGATTCTTTC+GGG + chr5_4:48812815-48812834 Msa0855490:CDS 35.0%
AGTGAAGCATATGATAGATG+TGG + chr5_4:48813177-48813196 Msa0855490:CDS 35.0%
AGAGCTATTTGGGCAATATA+TGG + chr5_4:48813365-48813384 Msa0855490:CDS 35.0%
CAATATATGGTGAGTGATCA+TGG + chr5_4:48813378-48813397 Msa0855490:intron 35.0%
TGTTTGACAAGTTCATCTAC+TGG + chr5_4:48813509-48813528 Msa0855490:intron 35.0%
GTTTGACAAGTTCATCTACT+GGG + chr5_4:48813510-48813529 Msa0855490:intron 35.0%
AACTTGTAGCCAATTCCATT+TGG + chr5_4:48813681-48813700 Msa0855490:intron 35.0%
!!! ATACTACTGCTTTTTCAGTG+TGG + chr5_4:48813848-48813867 Msa0855490:intron 35.0%
! GCTGTAATATGTGAAGCATT+AGG - chr5_4:48813904-48813923 None:intergenic 35.0%
ACATATTACAGCAACTGCAA+TGG + chr5_4:48813912-48813931 Msa0855490:CDS 35.0%
ATCAACAGGAAATCTGTTGA+CGG - chr5_4:48814013-48814032 None:intergenic 35.0%
ATCAATACCTGGATATCAAC+AGG - chr5_4:48814027-48814046 None:intergenic 35.0%
TCATTATATGTGGGGACAAA+AGG - chr5_4:48814166-48814185 None:intergenic 35.0%
! CCCCACATATAATGATTTTG+TGG + chr5_4:48814171-48814190 Msa0855490:intron 35.0%
ATCTGAGGAAAAAAAATGGC+AGG + chr5_4:48814267-48814286 Msa0855490:intron 35.0%
GATAAATCCTCTAACACTGA+AGG - chr5_4:48814373-48814392 None:intergenic 35.0%
!! TAGCTGATTTGCAATTCCTA+AGG - chr5_4:48814606-48814625 None:intergenic 35.0%
!! AATGACCCTGCATTTGATTT+TGG + chr5_4:48814804-48814823 Msa0855490:intron 35.0%
TGAAGCCAAAATCAAATGCA+GGG - chr5_4:48814812-48814831 None:intergenic 35.0%
ATGAAGCCAAAATCAAATGC+AGG - chr5_4:48814813-48814832 None:intergenic 35.0%
GTATCTACCACAAGATGAAT+TGG + chr5_4:48814880-48814899 Msa0855490:CDS 35.0%
!!! GTTTTTTGATGAGGCAGAAA+AGG + chr5_4:48814997-48815016 Msa0855490:CDS 35.0%
! CAATTTTTCACAAGTAGAGG+AGG - chr5_4:48815585-48815604 None:intergenic 35.0%
CTCCTCTACTTGTGAAAAAT+TGG + chr5_4:48815583-48815602 Msa0855490:three_prime_UTR 35.0%
! CACCAATTTTTCACAAGTAG+AGG - chr5_4:48815588-48815607 None:intergenic 35.0%
CTCTACTTGTGAAAAATTGG+TGG + chr5_4:48815586-48815605 Msa0855490:three_prime_UTR 35.0%
! TGTGAAAAATTGGTGGCTTA+AGG + chr5_4:48815593-48815612 Msa0855490:three_prime_UTR 35.0%
ATAGATCTAGCATATGCAAG+TGG - chr5_4:48815899-48815918 None:intergenic 35.0%
ACTTGCATATGCTAGATCTA+TGG + chr5_4:48815898-48815917 Msa0855490:three_prime_UTR 35.0%
TGGAACTCACAACCATACAT+TGG + chr5_4:48811720-48811739 Msa0855490:five_prime_UTR 40.0%
ACAAGCAAACTTCAGAAGAG+TGG + chr5_4:48811857-48811876 Msa0855490:five_prime_UTR 40.0%
CAGAAGAGTGGAGAATTTAG+TGG + chr5_4:48811869-48811888 Msa0855490:five_prime_UTR 40.0%
ATTGCAACCACGATTTCGAT+CGG - chr5_4:48812371-48812390 None:intergenic 40.0%
!!! AGATTTTGAGGTCTCAGCAA+TGG - chr5_4:48812395-48812414 None:intergenic 40.0%
TCATGGTTTCAAACTGTGGT+CGG - chr5_4:48812427-48812446 None:intergenic 40.0%
!! AGTTAGCTTTGCTGGAAAAG+TGG + chr5_4:48812553-48812572 Msa0855490:intron 40.0%
! TGGAAAAGTGGTGTTTTCCA+AGG + chr5_4:48812565-48812584 Msa0855490:five_prime_UTR 40.0%
TGAGGAATAGGAGGAAGTTA+AGG + chr5_4:48812693-48812712 Msa0855490:five_prime_UTR 40.0%
! GTTAAGGTTAGCTAACAAGG+AGG + chr5_4:48812709-48812728 Msa0855490:five_prime_UTR 40.0%
ATCGAGTAAACCATTGGAAC+AGG - chr5_4:48812809-48812828 None:intergenic 40.0%
TGGTTTACTCGATTCTTTCG+GGG + chr5_4:48812816-48812835 Msa0855490:CDS 40.0%
CGAGCACATTCGATAACAAA+GGG - chr5_4:48813002-48813021 None:intergenic 40.0%
TGAGCAGAAGGTTTATGATG+TGG + chr5_4:48813056-48813075 Msa0855490:CDS 40.0%
!! TTATGATGTGGTTCTGAAGC+AGG + chr5_4:48813068-48813087 Msa0855490:CDS 40.0%
!! AAACCGGAAATTGTTTTGCC+TGG + chr5_4:48813138-48813157 Msa0855490:CDS 40.0%
!! AACCGGAAATTGTTTTGCCT+GGG + chr5_4:48813139-48813158 Msa0855490:CDS 40.0%
TTCCCAGGCAAAACAATTTC+CGG - chr5_4:48813144-48813163 None:intergenic 40.0%
CTCAACAAACTCAAATTCCC+AGG - chr5_4:48813159-48813178 None:intergenic 40.0%
GGTGAGTGATCATGGTTATA+TGG + chr5_4:48813386-48813405 Msa0855490:intron 40.0%
GAACTTAGTACATGACGGTA+TGG - chr5_4:48813714-48813733 None:intergenic 40.0%
TTACAGCAACTGCAATGGAT+AGG + chr5_4:48813917-48813936 Msa0855490:CDS 40.0%
! AGATTGGACGAACTTTTCCA+AGG + chr5_4:48813949-48813968 Msa0855490:CDS 40.0%
! GATTGGACGAACTTTTCCAA+GGG + chr5_4:48813950-48813969 Msa0855490:CDS 40.0%
GCAGCATCAAGCATATCAAA+TGG - chr5_4:48813979-48813998 None:intergenic 40.0%
CAGATTTCCTGTTGATATCC+AGG + chr5_4:48814017-48814036 Msa0855490:CDS 40.0%
CTCTACTGTTACTATGTTGC+TGG + chr5_4:48814494-48814513 Msa0855490:CDS 40.0%
TACTATGTTGCTGGAACTGT+TGG + chr5_4:48814503-48814522 Msa0855490:CDS 40.0%
TTTAATGAGTGTTCCCGTCA+TGG + chr5_4:48814526-48814545 Msa0855490:CDS 40.0%
TTAATGAGTGTTCCCGTCAT+GGG + chr5_4:48814527-48814546 Msa0855490:CDS 40.0%
ATTGTACACACTCTCTGTTG+TGG - chr5_4:48814573-48814592 None:intergenic 40.0%
ATTTGCAATTCCTAAGGCCA+AGG - chr5_4:48814600-48814619 None:intergenic 40.0%
ACCAACATACTCAGAGATGT+TGG + chr5_4:48814626-48814645 Msa0855490:CDS 40.0%
TCCAACATCTCTGAGTATGT+TGG - chr5_4:48814630-48814649 None:intergenic 40.0%
! TCAATTTTCCTAACAGTGCC+AGG + chr5_4:48814846-48814865 Msa0855490:intron 40.0%
TCAGATGACGACATATTTGC+CGG + chr5_4:48814917-48814936 Msa0855490:CDS 40.0%
!! ACGTTCTCGCCCTTTTAATT+TGG - chr5_4:48814979-48814998 None:intergenic 40.0%
GAAAACTTCAGCCACAAAGA+AGG - chr5_4:48815091-48815110 None:intergenic 40.0%
GATTTGAATTTCATCCCTCG+AGG + chr5_4:48815686-48815705 Msa0855490:three_prime_UTR 40.0%
GTTTGAACTTGTAACCTCGA+GGG - chr5_4:48815703-48815722 None:intergenic 40.0%
AGTTTGAACTTGTAACCTCG+AGG - chr5_4:48815704-48815723 None:intergenic 40.0%
AGTAGTAGTGGCATGGAACA+AGG - chr5_4:48812080-48812099 None:intergenic 45.0%
ATGAGGAAGTAGTAGTGGCA+TGG - chr5_4:48812087-48812106 None:intergenic 45.0%
TATGTGACCGATCGAAATCG+TGG + chr5_4:48812361-48812380 Msa0855490:intron 45.0%
TTAGAGGTCTCCTGTTCCAA+TGG + chr5_4:48812796-48812815 Msa0855490:CDS 45.0%
GCGAGCACATTCGATAACAA+AGG - chr5_4:48813003-48813022 None:intergenic 45.0%
! CGGTTTCACTTCAAGTTCAC+CGG - chr5_4:48813124-48813143 None:intergenic 45.0%
CGGTGAACTTGAAGTGAAAC+CGG + chr5_4:48813122-48813141 Msa0855490:CDS 45.0%
CTCTTCTAATGACTCCCGAA+AGG + chr5_4:48813339-48813358 Msa0855490:CDS 45.0%
CAAATAGCTCTTCGCCTTTC+GGG - chr5_4:48813356-48813375 None:intergenic 45.0%
CCAAATAGCTCTTCGCCTTT+CGG - chr5_4:48813357-48813376 None:intergenic 45.0%
CGAAAGGCGAAGAGCTATTT+GGG + chr5_4:48813355-48813374 Msa0855490:CDS 45.0%
TACTGGGCAGTTTCTGCTAT+AGG + chr5_4:48813526-48813545 Msa0855490:intron 45.0%
GGCGCATAACCAAATGGAAT+TGG - chr5_4:48813693-48813712 None:intergenic 45.0%
!!! CTGCTTTTTCAGTGTGGTGT+AGG + chr5_4:48813854-48813873 Msa0855490:intron 45.0%
!!! CTTTTTCAGTGTGGTGTAGG+AGG + chr5_4:48813857-48813876 Msa0855490:intron 45.0%
!! AGGACGGATGAACTTGTTGA+TGG + chr5_4:48813877-48813896 Msa0855490:CDS 45.0%
AGCAACTGCAATGGATAGGT+GGG + chr5_4:48813921-48813940 Msa0855490:CDS 45.0%
GGATAGGTGGGAATCAAGAT+TGG + chr5_4:48813933-48813952 Msa0855490:CDS 45.0%
TCTACTTGAAAGGCAACGAG+TGG + chr5_4:48814101-48814120 Msa0855490:intron 45.0%
ATGTTCGCCTTCAGTGTTAG+AGG + chr5_4:48814363-48814382 Msa0855490:intron 45.0%
ATGCGTTGAAATGCCCATGA+CGG - chr5_4:48814543-48814562 None:intergenic 45.0%
CATACTCAGAGATGTTGGAG+AGG + chr5_4:48814631-48814650 Msa0855490:CDS 45.0%
! ACCACAAGATGAATTGGCTC+TGG + chr5_4:48814886-48814905 Msa0855490:CDS 45.0%
!! AAGATGAATTGGCTCTGGCA+GGG + chr5_4:48814891-48814910 Msa0855490:CDS 45.0%
TGACGACATATTTGCCGGTA+AGG + chr5_4:48814922-48814941 Msa0855490:CDS 45.0%
!!! GGCGAGAACGTTTTTTGATG+AGG + chr5_4:48814988-48815007 Msa0855490:CDS 45.0%
AGCTCAATGAACAGAGCAGA+TGG + chr5_4:48815029-48815048 Msa0855490:CDS 45.0%
!!! TGTGACGCAAAAGGGTGTTT+TGG + chr5_4:48815750-48815769 Msa0855490:three_prime_UTR 45.0%
!!! AAGGGTGTTTTGGATGTTGC+AGG + chr5_4:48815760-48815779 Msa0855490:three_prime_UTR 45.0%
!! TGTTTTGGATGTTGCAGGTG+TGG + chr5_4:48815765-48815784 Msa0855490:three_prime_UTR 45.0%
!! GTTTTGGATGTTGCAGGTGT+GGG + chr5_4:48815766-48815785 Msa0855490:three_prime_UTR 45.0%
!!! TATTTATTTTTTTTTTTTGA+AGG - chr5_4:48815287-48815306 None:intergenic 5.0%
TGCTTCCTCTCCTAGCTTAG+AGG + chr5_4:48812780-48812799 Msa0855490:CDS 50.0%
GAACAGGAGACCTCTAAGCT+AGG - chr5_4:48812793-48812812 None:intergenic 50.0%
! TATGCATGTGTTGGTCAGCC+TGG + chr5_4:48812955-48812974 Msa0855490:CDS 50.0%
TTGCTAGCACTCTCTAAGCC+AGG - chr5_4:48812976-48812995 None:intergenic 50.0%
AGCAGGCGTCTTTGGTTAAG+AGG + chr5_4:48813085-48813104 Msa0855490:CDS 50.0%
AAGAGGAAGCTGAGCTCTAC+CGG + chr5_4:48813102-48813121 Msa0855490:CDS 50.0%
CCGAAAGGCGAAGAGCTATT+TGG + chr5_4:48813354-48813373 Msa0855490:CDS 50.0%
CGGTATGGCGCATAACCAAA+TGG - chr5_4:48813699-48813718 None:intergenic 50.0%
TTCAGTGTGGTGTAGGAGGA+CGG + chr5_4:48813861-48813880 Msa0855490:intron 50.0%
CAGCAACTGCAATGGATAGG+TGG + chr5_4:48813920-48813939 Msa0855490:CDS 50.0%
GCATATCAAATGGACGCCCT+TGG - chr5_4:48813969-48813988 None:intergenic 50.0%
AACTTTCCTGCAACCAGCCT+AGG + chr5_4:48814138-48814157 Msa0855490:intron 50.0%
TGTGGGGACAAAAGGAACCT+AGG - chr5_4:48814158-48814177 None:intergenic 50.0%
TGCGTTGAAATGCCCATGAC+GGG - chr5_4:48814542-48814561 None:intergenic 50.0%
GAGTGTGTACAATGCTGCCT+TGG + chr5_4:48814580-48814599 Msa0855490:CDS 50.0%
! TACAATGCTGCCTTGGCCTT+AGG + chr5_4:48814587-48814606 Msa0855490:CDS 50.0%
TAGATACACTCTTCCTCGCC+TGG - chr5_4:48814867-48814886 None:intergenic 50.0%
GCCAGAGCCAATTCATCTTG+TGG - chr5_4:48814890-48814909 None:intergenic 50.0%
!! CAAGATGAATTGGCTCTGGC+AGG + chr5_4:48814890-48814909 Msa0855490:CDS 50.0%
CCACTTGTCTGTCACCTTAC+CGG - chr5_4:48814939-48814958 None:intergenic 50.0%
GTAAGGTGACAGACAAGTGG+AGG + chr5_4:48814939-48814958 Msa0855490:CDS 50.0%
TGAGGCAGAAAAGGGAGTGA+CGG + chr5_4:48815006-48815025 Msa0855490:CDS 50.0%
CAATGAACAGAGCAGATGGC+CGG + chr5_4:48815033-48815052 Msa0855490:CDS 50.0%
GGAGACCTCTAAGCTAGGAG+AGG - chr5_4:48812788-48812807 None:intergenic 55.0%
ACAGCCACTTCTCCTGCAGT+CGG - chr5_4:48813030-48813049 None:intergenic 55.0%
! GGCTGTTTCGTCTGAGCAGA+AGG + chr5_4:48813044-48813063 Msa0855490:CDS 55.0%
!! GGTTCTGAAGCAGGCGTCTT+TGG + chr5_4:48813077-48813096 Msa0855490:CDS 55.0%
! AAGGAACCTAGGCTGGTTGC+AGG - chr5_4:48814147-48814166 None:intergenic 55.0%
GGGACAAAAGGAACCTAGGC+TGG - chr5_4:48814154-48814173 None:intergenic 55.0%
TTTCCTAACAGTGCCAGGCG+AGG + chr5_4:48814851-48814870 Msa0855490:intron 55.0%
CCGGTAAGGTGACAGACAAG+TGG + chr5_4:48814936-48814955 Msa0855490:CDS 55.0%
GAACCCGACTGCAGGAGAAG+TGG + chr5_4:48813023-48813042 Msa0855490:CDS 60.0%
CAGCCACTTCTCCTGCAGTC+GGG - chr5_4:48813029-48813048 None:intergenic 60.0%
CTTCCTCGCCTGGCACTGTT+AGG - chr5_4:48814857-48814876 None:intergenic 60.0%
GTGCTCGCGAACCCGACTGC+AGG + chr5_4:48813015-48813034 Msa0855490:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 48811647 48816078 48811647 ID=Msa0855490;Name=Msa0855490
chr5_4 mRNA 48811647 48816078 48811647 ID=Msa0855490-mRNA-1;Parent=Msa0855490;Name=Msa0855490-mRNA-1;_AED=0.14;_eAED=0.14;_QI=464|1|1|1|0.8|0.66|6|916|413
chr5_4 exon 48811647 48811908 48811647 ID=Msa0855490-mRNA-1:exon:15412;Parent=Msa0855490-mRNA-1
chr5_4 exon 48812555 48813237 48812555 ID=Msa0855490-mRNA-1:exon:15413;Parent=Msa0855490-mRNA-1
chr5_4 exon 48813336 48813386 48813336 ID=Msa0855490-mRNA-1:exon:15414;Parent=Msa0855490-mRNA-1
chr5_4 exon 48813866 48814038 48813866 ID=Msa0855490-mRNA-1:exon:15415;Parent=Msa0855490-mRNA-1
chr5_4 exon 48814419 48814654 48814419 ID=Msa0855490-mRNA-1:exon:15416;Parent=Msa0855490-mRNA-1
chr5_4 exon 48814862 48816078 48814862 ID=Msa0855490-mRNA-1:exon:15417;Parent=Msa0855490-mRNA-1
chr5_4 five_prime_UTR 48811647 48811908 48811647 ID=Msa0855490-mRNA-1:five_prime_utr;Parent=Msa0855490-mRNA-1
chr5_4 five_prime_UTR 48812555 48812756 48812555 ID=Msa0855490-mRNA-1:five_prime_utr;Parent=Msa0855490-mRNA-1
chr5_4 CDS 48812757 48813237 48812757 ID=Msa0855490-mRNA-1:cds;Parent=Msa0855490-mRNA-1
chr5_4 CDS 48813336 48813386 48813336 ID=Msa0855490-mRNA-1:cds;Parent=Msa0855490-mRNA-1
chr5_4 CDS 48813866 48814038 48813866 ID=Msa0855490-mRNA-1:cds;Parent=Msa0855490-mRNA-1
chr5_4 CDS 48814419 48814654 48814419 ID=Msa0855490-mRNA-1:cds;Parent=Msa0855490-mRNA-1
chr5_4 CDS 48814862 48815162 48814862 ID=Msa0855490-mRNA-1:cds;Parent=Msa0855490-mRNA-1
chr5_4 three_prime_UTR 48815163 48816078 48815163 ID=Msa0855490-mRNA-1:three_prime_utr;Parent=Msa0855490-mRNA-1
Gene Sequence

>Msa0855490

ATGTCTGTGACATTATTAAGGGTTGCTTCCTCTCCTAGCTTAGAGGTCTCCTGTTCCAATGGTTTACTCGATTCTTTCGGGGTTGTGAAGCTCGTAGATTCTTCGAAGTTCTTGTCTAGAGACTTTGTGTCGATTAGAGCTAAAAAAAATGATAAGAAAAAGACACGGAGATTTTGCTCATTGAGTACAGATATTAAGTATGCATGTGTTGGTCAGCCTGGCTTAGAGAGTGCTAGCAACTTCCCTTTGTTATCGAATGTGCTCGCGAACCCGACTGCAGGAGAAGTGGCTGTTTCGTCTGAGCAGAAGGTTTATGATGTGGTTCTGAAGCAGGCGTCTTTGGTTAAGAGGAAGCTGAGCTCTACCGGTGAACTTGAAGTGAAACCGGAAATTGTTTTGCCTGGGAATTTGAGTTTGTTGAGTGAAGCATATGATAGATGTGGAGAAATTTGTGCAGAATATGCTAAAACATTTTACTTGGGAACTCTTCTAATGACTCCCGAAAGGCGAAGAGCTATTTGGGCAATATATGTGTGGTGTAGGAGGACGGATGAACTTGTTGATGGCCCTAATGCTTCACATATTACAGCAACTGCAATGGATAGGTGGGAATCAAGATTGGACGAACTTTTCCAAGGGCGTCCATTTGATATGCTTGATGCTGCTTTATCAGACACCGTCAACAGATTTCCTGTTGATATCCAGCCATTTAAAGATATGATAGAAGGAATGAGAATGGATCTTAAGAAGTCGAGATACAAAAGCTTTGATGAACTATATCTCTACTGTTACTATGTTGCTGGAACTGTTGGTTTAATGAGTGTTCCCGTCATGGGCATTTCAACGCATTCGCAAGCCACAACAGAGAGTGTGTACAATGCTGCCTTGGCCTTAGGAATTGCAAATCAGCTAACCAACATACTCAGAGATGTTGGAGAGGATGCCAGGCGAGGAAGAGTGTATCTACCACAAGATGAATTGGCTCTGGCAGGGCTTTCAGATGACGACATATTTGCCGGTAAGGTGACAGACAAGTGGAGGAACTTCATGAAGAGCCAAATTAAAAGGGCGAGAACGTTTTTTGATGAGGCAGAAAAGGGAGTGACGGAGCTCAATGAACAGAGCAGATGGCCGGTAAGAAATTCAACCAAACATCATTATACAAAACCTTCTTTGTGGCTGAAGTTTTCATTGTTTCGCAGTATATATGTAAGTGTGTATAGATGGAATGTCTTTGCATGA

Protein sequence

>Msa0855490

MSVTLLRVASSPSLEVSCSNGLLDSFGVVKLVDSSKFLSRDFVSIRAKKNDKKKTRRFCSLSTDIKYACVGQPGLESASNFPLLSNVLANPTAGEVAVSSEQKVYDVVLKQASLVKRKLSSTGELEVKPEIVLPGNLSLLSEAYDRCGEICAEYAKTFYLGTLLMTPERRRAIWAIYVWCRRTDELVDGPNASHITATAMDRWESRLDELFQGRPFDMLDAALSDTVNRFPVDIQPFKDMIEGMRMDLKKSRYKSFDELYLYCYYVAGTVGLMSVPVMGISTHSQATTESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELALAGLSDDDIFAGKVTDKWRNFMKSQIKRARTFFDEAEKGVTELNEQSRWPVRNSTKHHYTKPSLWLKFSLFRSIYVSVYRWNVFA*