AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0659640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0659640 MtrunA17_Chr8g0384911 98.510 604 9 0 11 614 139 742 0.0 1231
Msa0659640 MtrunA17_Chr8g0384911 33.537 164 95 6 229 381 107 267 4.98e-14 75.5
Msa0659640 MtrunA17_Chr1g0193701 26.768 198 112 6 209 377 71 264 4.15e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0659640 AT5G08720.1 69.508 610 160 10 11 614 129 718 0.0 818
Msa0659640 AT5G08720.1 34.483 145 87 4 229 367 97 239 9.03e-14 75.1
Msa0659640 AT4G01650.2 32.934 167 88 6 229 373 38 202 1.01e-17 82.8
Msa0659640 AT4G01650.1 32.934 167 88 6 229 373 115 279 4.77e-17 82.4
Msa0659640 AT4G01650.3 36.449 107 59 3 229 326 115 221 2.71e-14 73.2

Find 204 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTACTGATTGCTAAATT+TGG 0.126575 4_3:+70012272 None:intergenic
CAGGAAATTGTGATGCTTTC+CGG 0.135896 4_3:+70011446 None:intergenic
AAAACTTCTTTGGTTGTTAA+TGG 0.150554 4_3:-70012833 Msa0659640:CDS
TAAAAGAGTTGGACATAAAT+TGG 0.162386 4_3:-70010422 Msa0659640:CDS
TCCTTTCACTTGGCGCATTT+TGG 0.166058 4_3:-70010127 Msa0659640:three_prime_UTR
AACAGCAATTGGGGTATATT+TGG 0.184340 4_3:-70012689 Msa0659640:CDS
AAGCTATGGTTAATCAATTA+TGG 0.203967 4_3:+70013913 None:intergenic
GCCAAAACAACTTATGAAAA+TGG 0.207859 4_3:-70013817 Msa0659640:five_prime_UTR
TAGGACTTCAGTTCAAATTA+AGG 0.215602 4_3:-70010082 Msa0659640:three_prime_UTR
CATTGAAGCTCGTGTTGTTT+TGG 0.228996 4_3:-70013503 Msa0659640:CDS
TATTCAAATTTCCACCTAAA+TGG 0.230001 4_3:+70014122 None:intergenic
TACTGATGCCATGTACTTAT+TGG 0.234172 4_3:-70010160 Msa0659640:three_prime_UTR
CATATTCAGCAACAAATTTC+AGG 0.244825 4_3:+70011248 None:intergenic
ATTTCCACCTAAATGGCTTC+TGG 0.245633 4_3:+70014129 None:intergenic
CGACTTGCATAAAACTTCTT+TGG 0.246522 4_3:-70012843 Msa0659640:CDS
AATTTCAGCTGTGGGATTAT+AGG 0.255058 4_3:+70009964 None:intergenic
CTGAAATTTGTTGCTGAATA+TGG 0.261458 4_3:-70011247 Msa0659640:CDS
TTAACCATAGCTTCATTATA+AGG 0.267969 4_3:-70013903 Msa0659640:five_prime_UTR
TAGAGTTGAAAGGAATCTTT+TGG 0.269880 4_3:-70012894 Msa0659640:CDS
GCCCATTTCCTGGAAGGATA+TGG 0.274340 4_3:-70013564 Msa0659640:CDS
TTAGGTGGAAATTTGAATAA+TGG 0.274468 4_3:-70014118 Msa0659640:five_prime_UTR
GTGAGCTTCAAGTGGTTTCT+TGG 0.276863 4_3:-70014054 Msa0659640:five_prime_UTR
TCGACTCATTCCATGGAAAA+TGG 0.279784 4_3:-70011889 Msa0659640:CDS
CTTCATTATAAGGGCATGTT+TGG 0.282710 4_3:-70013893 Msa0659640:five_prime_UTR
TTTATGTGAAACTGACAAAT+TGG 0.284957 4_3:-70012783 Msa0659640:CDS
GGTTTGGACACTTCAATTTC+CGG 0.285305 4_3:-70012740 Msa0659640:CDS
TCTACTAGCATAAACTCTTT+AGG 0.285422 4_3:-70013847 Msa0659640:five_prime_UTR
AACCATATCCTTCCAGGAAA+TGG 0.286044 4_3:+70013562 None:intergenic
CCGCAGATTTGATGGACTTT+TGG 0.287220 4_3:-70012618 Msa0659640:intron
AATCTTATCATATGACTCTT+TGG 0.292633 4_3:+70013666 None:intergenic
CGTATTCCTTGCCCATTTCC+TGG 0.303078 4_3:-70013574 Msa0659640:CDS
TGCTCTAACCATATCCTTCC+AGG 0.304191 4_3:+70013556 None:intergenic
TTAAGAAGTTTGAGGGAAAA+TGG 0.304395 4_3:-70013158 Msa0659640:CDS
TTACATTACACCAATGTCTT+TGG 0.308711 4_3:+70013697 None:intergenic
ACCGCAAACCAAAGGGTTAC+TGG 0.312478 4_3:-70011093 Msa0659640:CDS
AAATGATGGTTTGGAATATA+AGG 0.314737 4_3:+70014225 None:intergenic
TGTAAACCCAGAAGCCATTT+AGG 0.317387 4_3:-70014136 Msa0659640:five_prime_UTR
TAGGTGGAAATTTGAATAAT+GGG 0.318321 4_3:-70014117 Msa0659640:five_prime_UTR
CACCCTTCAATAGCAAAATA+TGG 0.319903 4_3:-70010210 Msa0659640:three_prime_UTR
TTGTTGTTGATGATGTTTCA+TGG 0.321467 4_3:+70014353 None:intergenic
ATTTCATACCAAATCTTGTT+TGG 0.323525 4_3:-70013943 Msa0659640:five_prime_UTR
GCCAAGGTTGTTGTCCTGTC+TGG 0.332172 4_3:+70010551 None:intergenic
CCAGTGAGTTAAACAGCAAT+TGG 0.332368 4_3:-70012700 Msa0659640:CDS
ATCAACTAATTTATCTTATG+AGG 0.337577 4_3:-70013008 Msa0659640:CDS
GTTCATCTCCGCAGATTTGA+TGG 0.338069 4_3:-70012626 Msa0659640:CDS
CAATAAAGTCCGCATTCTTC+AGG 0.340923 4_3:-70012234 Msa0659640:intron
CTTATTGCACACAAGTTTGA+TGG 0.342584 4_3:+70011484 None:intergenic
GATTACCTCCAAACAAGATT+TGG 0.343316 4_3:+70013935 None:intergenic
TAATCAAAGGTCAAGAGTTC+CGG 0.348104 4_3:-70011308 Msa0659640:CDS
CCCAGTAACCCTTTGGTTTG+CGG 0.349921 4_3:+70011092 None:intergenic
TTTCCACCTAAATGGCTTCT+GGG 0.357536 4_3:+70014130 None:intergenic
AGCTAGAGAGAGGTTCATTA+TGG 0.363567 4_3:+70011123 None:intergenic
GTGTAAAGGCCTGCTTTATA+TGG 0.365800 4_3:-70011990 Msa0659640:CDS
TCCTTGCCTTGAGAGATAGA+AGG 0.366056 4_3:+70010583 None:intergenic
TATGCAAGTCGTCTTCTGGC+TGG 0.376831 4_3:+70012855 None:intergenic
GGACAATCTTGAAAATTTGC+AGG 0.376858 4_3:-70011071 Msa0659640:CDS
AGGACTTCAGTTCAAATTAA+GGG 0.380996 4_3:-70010081 Msa0659640:three_prime_UTR
CTTTGATATTGCACGGGCGC+TGG 0.383854 4_3:-70010637 Msa0659640:CDS
CTTTGGTTTCGTATAGAACT+TGG 0.384750 4_3:+70013714 None:intergenic
GTATTCTGCTCACAAACTTC+AGG 0.385344 4_3:+70011427 None:intergenic
TAACCATAGCTTCATTATAA+GGG 0.389994 4_3:-70013902 Msa0659640:five_prime_UTR
GGAAAATGGTCTGTAAAATC+TGG 0.393706 4_3:-70013144 Msa0659640:CDS
CAGTGAGTTAAACAGCAATT+GGG 0.406091 4_3:-70012699 Msa0659640:CDS
TGCCTATGAGGAAGCAGCTT+CGG 0.407535 4_3:-70011210 Msa0659640:CDS
ATCCTTTCCAAGAAAATAGC+TGG 0.407564 4_3:+70012959 None:intergenic
TGACAAATTGGCACCTGGTC+AGG 0.409173 4_3:-70012771 Msa0659640:CDS
AAGGAAGAGCGTAGAGAAAG+TGG 0.411995 4_3:+70014244 None:intergenic
ATGCTGATATTAACTCCGTT+TGG 0.413462 4_3:-70013997 Msa0659640:five_prime_UTR
GTTCCTTTCTGAAGCTATCA+TGG 0.414791 4_3:-70011795 Msa0659640:CDS
ATGCAAGTCGTCTTCTGGCT+GGG 0.415764 4_3:+70012856 None:intergenic
AATCAAAGGTCAAGAGTTCC+GGG 0.421005 4_3:-70011307 Msa0659640:CDS
AAAAGAGTTGGACATAAATT+GGG 0.422170 4_3:-70010421 Msa0659640:CDS
GAACAACAAATTATATCATC+TGG 0.426503 4_3:-70011397 Msa0659640:CDS
TCGTTCAAATGACTTTCTAC+TGG 0.427969 4_3:+70010816 None:intergenic
TTAATTTGAACTGAAGTCCT+AGG 0.430865 4_3:+70010084 None:intergenic
TATCTACATCTGCTGATTCT+CGG 0.432007 4_3:+70010508 None:intergenic
GATTTCAAAGGGCAATGTAT+TGG 0.434318 4_3:-70013528 Msa0659640:CDS
GGAGACTTTAAGAAGTTTGA+GGG 0.435260 4_3:-70013165 Msa0659640:CDS
AAGCTCCTGTTCGTGATGTA+TGG 0.435936 4_3:-70012456 Msa0659640:CDS
TCAAGTGTTTATCATATAAG+TGG 0.440789 4_3:+70013760 None:intergenic
TAAGTAGATTTCAGAGATGC+TGG 0.441100 4_3:-70010861 Msa0659640:CDS
TTATAAGGGCATGTTTGGAT+TGG 0.446629 4_3:-70013888 Msa0659640:five_prime_UTR
AGAATGTGCTTACAGAATTG+AGG 0.448020 4_3:+70013467 None:intergenic
ACCATATCCTTCCAGGAAAT+GGG 0.452989 4_3:+70013563 None:intergenic
TTTCTACTGGGCATAAATGA+TGG 0.458102 4_3:+70010829 None:intergenic
CTTGGAAAGGATTGTCAGAT+CGG 0.461197 4_3:-70012948 Msa0659640:CDS
TAAGTACAACTATGTGTTGA+TGG 0.461654 4_3:-70010354 Msa0659640:three_prime_UTR
AGATTGTCCCAGTAACCCTT+TGG 0.463671 4_3:+70011085 None:intergenic
TGAGTGTGAGTGTGTGAAGA+AGG 0.463920 4_3:+70014320 None:intergenic
CCAATTGCTGTTTAACTCAC+TGG 0.464061 4_3:+70012700 None:intergenic
TGGTCAGGATAAAGAAGGTT+TGG 0.466478 4_3:-70012756 Msa0659640:CDS
GAGACAGACTATTTAATCCT+AGG 0.471771 4_3:-70010101 Msa0659640:three_prime_UTR
TTCTGAAGCTATCATGGAAG+AGG 0.480831 4_3:-70011789 Msa0659640:intron
TGGAGACTTTAAGAAGTTTG+AGG 0.481726 4_3:-70013166 Msa0659640:CDS
TTGCACGGGCGCTGGAAAAG+TGG 0.485341 4_3:-70010629 Msa0659640:CDS
TGCACGGGCGCTGGAAAAGT+GGG 0.485874 4_3:-70010628 Msa0659640:CDS
TTGGAGGGAACGGAGAGTTA+AGG 0.486180 4_3:-70014035 Msa0659640:five_prime_UTR
AGCCGAAGCTGCTTCCTCAT+AGG 0.486988 4_3:+70011208 None:intergenic
TACAAATACCGCAAACCAAA+GGG 0.487175 4_3:-70011100 Msa0659640:CDS
GGAAGACGCAGGCAATGAAC+CGG 0.492642 4_3:+70012721 None:intergenic
TAAGAGACTACGTTGAGAAC+CGG 0.494267 4_3:-70011465 Msa0659640:CDS
CCGCAAACCAAAGGGTTACT+GGG 0.494866 4_3:-70011092 Msa0659640:CDS
ACATTCCATACATCACGAAC+AGG 0.495980 4_3:+70012451 None:intergenic
TGCAAGTCGTCTTCTGGCTG+GGG 0.496780 4_3:+70012857 None:intergenic
TCCAAAATGCGCCAAGTGAA+AGG 0.498924 4_3:+70010126 None:intergenic
ATATAAATATATTTATACAT+TGG 0.500183 4_3:-70010379 Msa0659640:three_prime_UTR
CAGGCCGCTTTGATATTGCA+CGG 0.501731 4_3:-70010644 Msa0659640:CDS
CAAATTATATCATCTGGCTC+TGG 0.502999 4_3:-70011391 Msa0659640:CDS
TTCCTTGCCCATTTCCTGGA+AGG 0.505510 4_3:-70013570 Msa0659640:CDS
ATAGCTGGGAAATTGAATCT+TGG 0.507663 4_3:+70012974 None:intergenic
TCATACCAAATCTTGTTTGG+AGG 0.510529 4_3:-70013940 Msa0659640:five_prime_UTR
AGTGCGAGCATTGTGGCCAC+TGG 0.512106 4_3:+70014390 None:intergenic
CCTTTCAACTCTATATGCTA+AGG 0.516881 4_3:+70012904 None:intergenic
CGTTCAAATGACTTTCTACT+GGG 0.520909 4_3:+70010817 None:intergenic
AAGTGGTTTCTTGGAGGGAA+CGG 0.523263 4_3:-70014045 Msa0659640:five_prime_UTR
CAATAGCAAAATATGGCTGC+TGG 0.524984 4_3:-70010203 Msa0659640:three_prime_UTR
AGAAAGTCATTTGAACGAGT+TGG 0.530001 4_3:-70010811 Msa0659640:intron
AGGAAGCAGCTTCGGCTGCA+TGG 0.532690 4_3:-70011202 Msa0659640:CDS
TCAATATCCCTCTGTAGTCC+CGG 0.534477 4_3:+70011289 None:intergenic
AGCTTCAAGTGGTTTCTTGG+AGG 0.534532 4_3:-70014051 Msa0659640:five_prime_UTR
GGGTTTACACACTGTTGTTG+AGG 0.535537 4_3:+70014150 None:intergenic
GCTAAGGCTCGTAGATTCAC+AGG 0.538658 4_3:+70012920 None:intergenic
TGAGAAGGCTATAACTCGCA+TGG 0.539683 4_3:-70011167 Msa0659640:CDS
TTCAAAGCTCATCTAATCAA+AGG 0.543340 4_3:-70011321 Msa0659640:CDS
AGGAAGAGCGTAGAGAAAGT+GGG 0.545188 4_3:+70014245 None:intergenic
AAACCTTCTTTATCCTGACC+AGG 0.545502 4_3:+70012758 None:intergenic
GCTTCAAGTGGTTTCTTGGA+GGG 0.545578 4_3:-70014050 Msa0659640:five_prime_UTR
GCATACAGAACTAAAAGAGT+TGG 0.545618 4_3:-70010433 Msa0659640:CDS
TTCTCGCCTTCTATCTCTCA+AGG 0.546788 4_3:-70010589 Msa0659640:CDS
ATGCCCTTATAATGAAGCTA+TGG 0.547604 4_3:+70013899 None:intergenic
AAGTAGATTTCAGAGATGCT+GGG 0.547739 4_3:-70010860 Msa0659640:CDS
AGGCCGCTTTGATATTGCAC+GGG 0.548501 4_3:-70010643 Msa0659640:CDS
TTCTACTGGGCATAAATGAT+GGG 0.548996 4_3:+70010830 None:intergenic
ATCAGTTAAAGCATTCCAAA+CGG 0.551914 4_3:+70013982 None:intergenic
GGACTTCAGTTCAAATTAAG+GGG 0.555128 4_3:-70010080 Msa0659640:three_prime_UTR
AATATGCAGGAAGGGTGTAA+AGG 0.555160 4_3:-70012004 Msa0659640:intron
GGTGACTTCGACTCATTCCA+TGG 0.555479 4_3:-70011896 Msa0659640:CDS
ACCAGACAGGACAACAACCT+TGG 0.555859 4_3:-70010552 Msa0659640:CDS
TCTTGAAAATTTGCAGGACG+AGG 0.558044 4_3:-70011065 Msa0659640:intron
AGTCATACAATTTCAGCTGT+GGG 0.559385 4_3:+70009956 None:intergenic
AGGAAGGGTTTATGCCTATG+AGG 0.559853 4_3:-70011222 Msa0659640:CDS
GTTTCATGGCATGTTGGCAT+AGG 0.562291 4_3:+70014367 None:intergenic
GCACCTGGTCAGGATAAAGA+AGG 0.563894 4_3:-70012761 Msa0659640:CDS
TAGAGCAAAGAGGATTTCAA+AGG 0.565114 4_3:-70013540 Msa0659640:CDS
TTGCTGAATATGGTCAGGAA+GGG 0.565420 4_3:-70011237 Msa0659640:CDS
GATGATGTTTCATGGCATGT+TGG 0.566768 4_3:+70014361 None:intergenic
GTTGCTGAATATGGTCAGGA+AGG 0.566894 4_3:-70011238 Msa0659640:CDS
ATTTGTTGCTGAATATGGTC+AGG 0.570102 4_3:-70011242 Msa0659640:CDS
TTTCCCTCGCAATTTGCACA+AGG 0.570479 4_3:-70014185 Msa0659640:five_prime_UTR
TAGCAAAATATGGCTGCTGG+TGG 0.574174 4_3:-70010200 Msa0659640:three_prime_UTR
CTTCCATGATAGCTTCAGAA+AGG 0.579834 4_3:+70011792 None:intergenic
TCCTTTCCAAGAAAATAGCT+GGG 0.581774 4_3:+70012960 None:intergenic
AGAGCAAAGAGGATTTCAAA+GGG 0.581778 4_3:-70013539 Msa0659640:CDS
GTGCTAAGCAAGAATGTACA+AGG 0.582199 4_3:+70010315 None:intergenic
CATGAAGCACCATATAAAGC+AGG 0.584729 4_3:+70011981 None:intergenic
TATTGCTATGACAGTTTGCG+TGG 0.584981 4_3:-70009998 Msa0659640:three_prime_UTR
GCCTTCTATCTCTCAAGGCA+AGG 0.588537 4_3:-70010584 Msa0659640:CDS
TTCCCTCGCAATTTGCACAA+GGG 0.591926 4_3:-70014184 Msa0659640:five_prime_UTR
TTACAAATACCGCAAACCAA+AGG 0.593624 4_3:-70011101 Msa0659640:CDS
AAAGTGGGGTGGACTTCATG+AGG 0.593784 4_3:-70010613 Msa0659640:CDS
GAGTCATACAATTTCAGCTG+TGG 0.594592 4_3:+70009955 None:intergenic
TGCCCTTGTGCAAATTGCGA+GGG 0.594902 4_3:+70014182 None:intergenic
ATCCTTCCAGGAAATGGGCA+AGG 0.601199 4_3:+70013568 None:intergenic
AAATGGACGTTTGAGCAACT+AGG 0.601868 4_3:-70011872 Msa0659640:CDS
AAAATTTACCAATAAGTACA+TGG 0.603191 4_3:+70010152 None:intergenic
CTACAACACAAGGCTTGTCA+AGG 0.605033 4_3:+70012654 None:intergenic
AGTAGATTTCAGAGATGCTG+GGG 0.605132 4_3:-70010859 Msa0659640:CDS
GCTTCGGCTGCATGGAAGAG+TGG 0.605805 4_3:-70011194 Msa0659640:CDS
GAGAAGGCTATAACTCGCAT+GGG 0.607086 4_3:-70011166 Msa0659640:CDS
AGTGAGTTAAACAGCAATTG+GGG 0.607282 4_3:-70012698 Msa0659640:CDS
AGCAAAATATGGCTGCTGGT+GGG 0.608587 4_3:-70010199 Msa0659640:three_prime_UTR
TTAAGTTGCTTATACAAACA+TGG 0.609473 4_3:-70013737 Msa0659640:five_prime_UTR
GGTATTTGTAAGCTAGAGAG+AGG 0.610502 4_3:+70011113 None:intergenic
TGTGTGTCTTGAGAAATATA+AGG 0.610890 4_3:+70010462 None:intergenic
CCTTAGCATATAGAGTTGAA+AGG 0.613436 4_3:-70012904 Msa0659640:CDS
AAGAGTTCCGGGACTACAGA+GGG 0.615046 4_3:-70011296 Msa0659640:CDS
TGGAAGAGTGGATATTGAGA+AGG 0.615915 4_3:-70011182 Msa0659640:CDS
AGGATATGGTTAGAGCAAAG+AGG 0.617625 4_3:-70013550 Msa0659640:CDS
ATGCCCTTGTGCAAATTGCG+AGG 0.617760 4_3:+70014181 None:intergenic
CGGGCGCTGGAAAAGTGGGG+TGG 0.622705 4_3:-70010624 Msa0659640:CDS
GCACGGGCGCTGGAAAAGTG+GGG 0.634461 4_3:-70010627 Msa0659640:CDS
TTTCATGTGAAGGAAAATGG+AGG 0.635353 4_3:-70012514 Msa0659640:intron
AAGGCTATAACTCGCATGGG+TGG 0.635453 4_3:-70011163 Msa0659640:CDS
GGTTAACTGTGAGCTTCAAG+TGG 0.636625 4_3:-70014062 Msa0659640:five_prime_UTR
TAAGCAAGAATGTACAAGGA+AGG 0.637170 4_3:+70010319 None:intergenic
TTTCTCAAGACACACACAAG+TGG 0.642360 4_3:-70010455 Msa0659640:CDS
CAAGAGTTCCGGGACTACAG+AGG 0.649469 4_3:-70011297 Msa0659640:CDS
GGTCTGTAAAATCTGGAACA+AGG 0.653193 4_3:-70013137 Msa0659640:intron
AGAAGAAGAAGGTGACCGTG+AGG 0.654804 4_3:-70014083 Msa0659640:five_prime_UTR
GCATAGGAGTGCGAGCATTG+TGG 0.655508 4_3:+70014383 None:intergenic
CCAAAAGTCCATCAAATCTG+CGG 0.656121 4_3:+70012618 None:intergenic
TATGGTGCTTCATGCTCGTG+TGG 0.656840 4_3:-70011972 Msa0659640:CDS
GATTTGGTATGAAATCAGCT+AGG 0.657566 4_3:+70013951 None:intergenic
AAACCCAGAAGCCATTTAGG+TGG 0.657917 4_3:-70014133 Msa0659640:five_prime_UTR
ACAGGACAACAACCTTGGCA+AGG 0.660733 4_3:-70010547 Msa0659640:CDS
TGAACTTCATCTACAACACA+AGG 0.661750 4_3:+70012644 None:intergenic
CTATACGAAACCAAAGACAT+TGG 0.662629 4_3:-70013707 Msa0659640:five_prime_UTR
GAAACTGACAAATTGGCACC+TGG 0.667925 4_3:-70012776 Msa0659640:CDS
GAAGCTCACAGTTAACCTCA+CGG 0.685357 4_3:+70014068 None:intergenic
TTTAACTCACTGGAAGACGC+AGG 0.696438 4_3:+70012710 None:intergenic
TGGTCCGTACCTGAAGAATG+CGG 0.706706 4_3:+70012225 None:intergenic
CACACTGCTAAAGTACTCTG+TGG 0.709210 4_3:-70011840 Msa0659640:CDS
GCGCCCGTGCAATATCAAAG+CGG 0.728813 4_3:+70010640 None:intergenic
GTAGATTTCAGAGATGCTGG+GGG 0.734657 4_3:-70010858 Msa0659640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTATTTATATCATTCA+TGG + chr4_3:70011285-70011304 None:intergenic 10.0%
!!! ATTTACTTTCTTTTTATAAA+AGG + chr4_3:70012746-70012765 None:intergenic 10.0%
!!! CACATGAAAATATTTTTTAT+TGG + chr4_3:70011832-70011851 None:intergenic 15.0%
!!! TAAAAAATATTTTCATGTGA+AGG - chr4_3:70011833-70011852 Msa0659640:CDS 15.0%
!! AAAAAAAAAAAAAGGAGATA+TGG + chr4_3:70012701-70012720 None:intergenic 15.0%
!!! TCTTATTACCATTTTAATTT+TGG - chr4_3:70013661-70013680 Msa0659640:five_prime_UTR 15.0%
!!! CTTATTACCATTTTAATTTT+GGG - chr4_3:70013662-70013681 Msa0659640:five_prime_UTR 15.0%
!! ATAAATGAGCAAAAAAAAAA+GGG - chr4_3:70014317-70014336 Msa0659640:five_prime_UTR 15.0%
!!! ATTTTGTAGTATTAGAAAGT+TGG + chr4_3:70011118-70011137 None:intergenic 20.0%
!!! AAATTCTTTTTTAATGCTTC+AGG - chr4_3:70011134-70011153 Msa0659640:CDS 20.0%
!!! GTATTAACTTTAAGAAACAT+AGG + chr4_3:70011251-70011270 None:intergenic 20.0%
!! ATCAACTAATTTATCTTATG+AGG - chr4_3:70011349-70011368 Msa0659640:CDS 20.0%
!! TCTATACTAGATTGTTTATT+AGG - chr4_3:70011769-70011788 Msa0659640:intron 20.0%
!!! AATATGTATTTTACTAACAG+TGG + chr4_3:70012261-70012280 None:intergenic 20.0%
!!! ATACAAGTTCAAACTTTTAT+CGG + chr4_3:70012305-70012324 None:intergenic 20.0%
!! GTTTGTCTATAAATATGATT+TGG - chr4_3:70012590-70012609 Msa0659640:intron 20.0%
!!! TCTTTTTATAAAAGGAGATA+TGG + chr4_3:70012738-70012757 None:intergenic 20.0%
!!! AAGTAAATAACTGTTTTTGT+TGG - chr4_3:70012758-70012777 Msa0659640:CDS 20.0%
!! AAAATATTGAAGTTGAGAAA+GGG + chr4_3:70013586-70013605 None:intergenic 20.0%
!! CAAATCAAGATTGAAAAAAA+AGG + chr4_3:70014082-70014101 None:intergenic 20.0%
!!! CTTTTTTTTCAATCTTGATT+TGG - chr4_3:70014080-70014099 Msa0659640:five_prime_UTR 20.0%
!! AAAATTTACCAATAAGTACA+TGG + chr4_3:70014208-70014227 None:intergenic 20.0%
!! CATAAATGAGCAAAAAAAAA+AGG - chr4_3:70014316-70014335 Msa0659640:five_prime_UTR 20.0%
!! AAATGATGGTTTGGAATATA+AGG + chr4_3:70010135-70010154 None:intergenic 25.0%
! CAAAGATAAAAATGATGGTT+TGG + chr4_3:70010144-70010163 None:intergenic 25.0%
! AGACTCAAAGATAAAAATGA+TGG + chr4_3:70010149-70010168 None:intergenic 25.0%
! TATTCAAATTTCCACCTAAA+TGG + chr4_3:70010238-70010257 None:intergenic 25.0%
! TTAGGTGGAAATTTGAATAA+TGG - chr4_3:70010239-70010258 Msa0659640:three_prime_UTR 25.0%
! TAGGTGGAAATTTGAATAAT+GGG - chr4_3:70010240-70010259 Msa0659640:three_prime_UTR 25.0%
! ATTTCATACCAAATCTTGTT+TGG - chr4_3:70010414-70010433 Msa0659640:CDS 25.0%
! AAGCTATGGTTAATCAATTA+TGG + chr4_3:70010447-70010466 None:intergenic 25.0%
! TTAACCATAGCTTCATTATA+AGG - chr4_3:70010454-70010473 Msa0659640:CDS 25.0%
! TAACCATAGCTTCATTATAA+GGG - chr4_3:70010455-70010474 Msa0659640:CDS 25.0%
!! ACCATTTTCATAAGTTGTTT+TGG + chr4_3:70010544-70010563 None:intergenic 25.0%
! TCAAGTGTTTATCATATAAG+TGG + chr4_3:70010600-70010619 None:intergenic 25.0%
!! TTAAGTTGCTTATACAAACA+TGG - chr4_3:70010620-70010639 Msa0659640:CDS 25.0%
! AATCTTATCATATGACTCTT+TGG + chr4_3:70010694-70010713 None:intergenic 25.0%
! TTTAAAAACTGTATGAACAG+AGG - chr4_3:70011051-70011070 Msa0659640:intron 25.0%
! TTAAAAACTGTATGAACAGA+GGG - chr4_3:70011052-70011071 Msa0659640:intron 25.0%
!!! TTTTTTAATGCTTCAGGAAT+GGG - chr4_3:70011140-70011159 Msa0659640:CDS 25.0%
! AAAACTTCTTTGGTTGTTAA+TGG - chr4_3:70011524-70011543 Msa0659640:intron 25.0%
! TCTTCTGTCAAAAAGATAAA+TGG - chr4_3:70011548-70011567 Msa0659640:intron 25.0%
! TTTATGTGAAACTGACAAAT+TGG - chr4_3:70011574-70011593 Msa0659640:intron 25.0%
! GTTGCCTTAATTCTTAAAAT+GGG - chr4_3:70011791-70011810 Msa0659640:CDS 25.0%
!!! ACATCCCATTTTAAGAATTA+AGG + chr4_3:70011798-70011817 None:intergenic 25.0%
!! TATTTTCATGTGAAGGAAAA+TGG - chr4_3:70011840-70011859 Msa0659640:CDS 25.0%
! TCAATATCTCTAGTGTAAAA+AGG + chr4_3:70011976-70011995 None:intergenic 25.0%
!!! ACAAATGTTTTTTTGCCAAT+TGG + chr4_3:70012053-70012072 None:intergenic 25.0%
!! ATCTTACTGATTGCTAAATT+TGG + chr4_3:70012088-70012107 None:intergenic 25.0%
! TCTTGATTAAATCAATATGC+AGG - chr4_3:70012340-70012359 Msa0659640:intron 25.0%
! ATTAAATCAATATGCAGGAA+GGG - chr4_3:70012345-70012364 Msa0659640:intron 25.0%
!!! ATAACTGTTTTTGTTGGTAT+TGG - chr4_3:70012764-70012783 Msa0659640:CDS 25.0%
!! TATTGGATACAATCTTTTGA+GGG - chr4_3:70012781-70012800 Msa0659640:CDS 25.0%
! TAAATCGATCCACATTTAAA+TGG - chr4_3:70012804-70012823 Msa0659640:CDS 25.0%
!! TGTTATAAGTTCTTTGTTTC+AGG - chr4_3:70012833-70012852 Msa0659640:CDS 25.0%
! GAACAACAAATTATATCATC+TGG - chr4_3:70012960-70012979 Msa0659640:CDS 25.0%
!!! TTAACTTTAGCTTGTTATTC+TGG + chr4_3:70013356-70013375 None:intergenic 25.0%
! CAAAATATTGAAGTTGAGAA+AGG + chr4_3:70013587-70013606 None:intergenic 25.0%
! TAAAAGAGTTGGACATAAAT+TGG - chr4_3:70013935-70013954 Msa0659640:five_prime_UTR 25.0%
! AAAAGAGTTGGACATAAATT+GGG - chr4_3:70013936-70013955 Msa0659640:five_prime_UTR 25.0%
!! TAAATTTTCTTCCTTTCACT+TGG - chr4_3:70014220-70014239 Msa0659640:five_prime_UTR 25.0%
!! TTGTTGTTGATGATGTTTCA+TGG + chr4_3:70010007-70010026 None:intergenic 30.0%
! ATCAGTTAAAGCATTCCAAA+CGG + chr4_3:70010378-70010397 None:intergenic 30.0%
TCTACTAGCATAAACTCTTT+AGG - chr4_3:70010510-70010529 Msa0659640:CDS 30.0%
GCCAAAACAACTTATGAAAA+TGG - chr4_3:70010540-70010559 Msa0659640:CDS 30.0%
TTACATTACACCAATGTCTT+TGG + chr4_3:70010663-70010682 None:intergenic 30.0%
!!! AGAGTTGTTTTTGTTGTTAG+TGG - chr4_3:70010759-70010778 Msa0659640:intron 30.0%
!!! GAGTTGTTTTTGTTGTTAGT+GGG - chr4_3:70010760-70010779 Msa0659640:intron 30.0%
!!! CTTTTTTAATGCTTCAGGAA+TGG - chr4_3:70011139-70011158 Msa0659640:CDS 30.0%
!! TCGAGAACTTCATTTTTCAA+TGG - chr4_3:70011164-70011183 Msa0659640:CDS 30.0%
!! CTTCATTTTTCAATGGTTGA+TGG - chr4_3:70011171-70011190 Msa0659640:CDS 30.0%
TTAAGAAGTTTGAGGGAAAA+TGG - chr4_3:70011199-70011218 Msa0659640:CDS 30.0%
! TAGAGTTGAAAGGAATCTTT+TGG - chr4_3:70011463-70011482 Msa0659640:CDS 30.0%
! AGAGTTGAAAGGAATCTTTT+GGG - chr4_3:70011464-70011483 Msa0659640:CDS 30.0%
GGTTGCCTTAATTCTTAAAA+TGG - chr4_3:70011790-70011809 Msa0659640:CDS 30.0%
!! TTACTAACAGTGGATTTTGA+TGG + chr4_3:70012251-70012270 None:intergenic 30.0%
GATTAAATCAATATGCAGGA+AGG - chr4_3:70012344-70012363 Msa0659640:intron 30.0%
! TTGTTTTCACTCGAAATGTT+TGG - chr4_3:70012645-70012664 Msa0659640:CDS 30.0%
TGTCTTGCTTCAACTTATAT+GGG + chr4_3:70012671-70012690 None:intergenic 30.0%
! GTATTGGATACAATCTTTTG+AGG - chr4_3:70012780-70012799 Msa0659640:CDS 30.0%
ACATTTCAGCCATTTAAATG+TGG + chr4_3:70012816-70012835 None:intergenic 30.0%
TTCAAAGCTCATCTAATCAA+AGG - chr4_3:70013036-70013055 Msa0659640:intron 30.0%
! ATTTCAGGAGTTCAGATTTT+AGG + chr4_3:70013097-70013116 None:intergenic 30.0%
CATATTCAGCAACAAATTTC+AGG + chr4_3:70013112-70013131 None:intergenic 30.0%
!! CTGAAATTTGTTGCTGAATA+TGG - chr4_3:70013110-70013129 Msa0659640:intron 30.0%
AATTGACAATGACATGATGA+AGG - chr4_3:70013374-70013393 Msa0659640:intron 30.0%
AAATCTACTTATCTGCATGA+CGG + chr4_3:70013487-70013506 None:intergenic 30.0%
AATAAGATACATATGCCATG+TGG + chr4_3:70013648-70013667 None:intergenic 30.0%
TGCTAAGCCCAAAATTAAAA+TGG + chr4_3:70013672-70013691 None:intergenic 30.0%
!! AGATAATGGAATTAACTTGC+AGG - chr4_3:70013694-70013713 Msa0659640:five_prime_UTR 30.0%
TGTGTGTCTTGAGAAATATA+AGG + chr4_3:70013898-70013917 None:intergenic 30.0%
TAAGTACAACTATGTGTTGA+TGG - chr4_3:70014003-70014022 Msa0659640:five_prime_UTR 30.0%
!!! AGCCATATTTTGCTATTGAA+GGG + chr4_3:70014152-70014171 None:intergenic 30.0%
! TTAATTTGAACTGAAGTCCT+AGG + chr4_3:70014276-70014295 None:intergenic 30.0%
TAGGACTTCAGTTCAAATTA+AGG - chr4_3:70014275-70014294 Msa0659640:five_prime_UTR 30.0%
AGGACTTCAGTTCAAATTAA+GGG - chr4_3:70014276-70014295 Msa0659640:five_prime_UTR 30.0%
ATGAGCAAAAAAAAAAGGGA+AGG - chr4_3:70014321-70014340 Msa0659640:five_prime_UTR 30.0%
AACAACAAACCAAAAACCAG+TGG - chr4_3:70009951-70009970 Msa0659640:three_prime_UTR 35.0%
CTTGAAGAAGAAGAAGAAGA+AGG + chr4_3:70010086-70010105 None:intergenic 35.0%
CTAGAAGAAGAAGAAGAAGA+AGG - chr4_3:70010263-70010282 Msa0659640:three_prime_UTR 35.0%
ATGCTGATATTAACTCCGTT+TGG - chr4_3:70010360-70010379 Msa0659640:three_prime_UTR 35.0%
! GATTTGGTATGAAATCAGCT+AGG + chr4_3:70010409-70010428 None:intergenic 35.0%
! TCATACCAAATCTTGTTTGG+AGG - chr4_3:70010417-70010436 Msa0659640:CDS 35.0%
GATTACCTCCAAACAAGATT+TGG + chr4_3:70010425-70010444 None:intergenic 35.0%
ATGCCCTTATAATGAAGCTA+TGG + chr4_3:70010461-70010480 None:intergenic 35.0%
! CTTCATTATAAGGGCATGTT+TGG - chr4_3:70010464-70010483 Msa0659640:CDS 35.0%
! TTATAAGGGCATGTTTGGAT+TGG - chr4_3:70010469-70010488 Msa0659640:CDS 35.0%
! CTTTGGTTTCGTATAGAACT+TGG + chr4_3:70010646-70010665 None:intergenic 35.0%
CTATACGAAACCAAAGACAT+TGG - chr4_3:70010650-70010669 Msa0659640:intron 35.0%
TAGAGCAAAGAGGATTTCAA+AGG - chr4_3:70010817-70010836 Msa0659640:CDS 35.0%
AGAGCAAAGAGGATTTCAAA+GGG - chr4_3:70010818-70010837 Msa0659640:CDS 35.0%
GATTTCAAAGGGCAATGTAT+TGG - chr4_3:70010829-70010848 Msa0659640:CDS 35.0%
AGAATGTGCTTACAGAATTG+AGG + chr4_3:70010893-70010912 None:intergenic 35.0%
TGAGAAGTGGATATCATTGA+AGG - chr4_3:70010982-70011001 Msa0659640:intron 35.0%
GAGAAGTGGATATCATTGAA+GGG - chr4_3:70010983-70011002 Msa0659640:intron 35.0%
! TGGAGACTTTAAGAAGTTTG+AGG - chr4_3:70011191-70011210 Msa0659640:CDS 35.0%
! GGAGACTTTAAGAAGTTTGA+GGG - chr4_3:70011192-70011211 Msa0659640:CDS 35.0%
GGAAAATGGTCTGTAAAATC+TGG - chr4_3:70011213-70011232 Msa0659640:CDS 35.0%
ATAGCTGGGAAATTGAATCT+TGG + chr4_3:70011386-70011405 None:intergenic 35.0%
!! CAATTTCCCAGCTATTTTCT+TGG - chr4_3:70011391-70011410 Msa0659640:CDS 35.0%
TCCTTTCCAAGAAAATAGCT+GGG + chr4_3:70011400-70011419 None:intergenic 35.0%
ATCCTTTCCAAGAAAATAGC+TGG + chr4_3:70011401-70011420 None:intergenic 35.0%
CCTTTCAACTCTATATGCTA+AGG + chr4_3:70011456-70011475 None:intergenic 35.0%
CCTTAGCATATAGAGTTGAA+AGG - chr4_3:70011453-70011472 Msa0659640:CDS 35.0%
! GAGTTGAAAGGAATCTTTTG+GGG - chr4_3:70011465-70011484 Msa0659640:CDS 35.0%
CGACTTGCATAAAACTTCTT+TGG - chr4_3:70011514-70011533 Msa0659640:intron 35.0%
CAGTGAGTTAAACAGCAATT+GGG - chr4_3:70011658-70011677 Msa0659640:intron 35.0%
AGTGAGTTAAACAGCAATTG+GGG - chr4_3:70011659-70011678 Msa0659640:intron 35.0%
AACAGCAATTGGGGTATATT+TGG - chr4_3:70011668-70011687 Msa0659640:intron 35.0%
TGAACTTCATCTACAACACA+AGG + chr4_3:70011716-70011735 None:intergenic 35.0%
TTTCATGTGAAGGAAAATGG+AGG - chr4_3:70011843-70011862 Msa0659640:CDS 35.0%
GCATGCTGTAAAAGATTTCT+AGG - chr4_3:70011999-70012018 Msa0659640:intron 35.0%
! TTTTCTGACTCAACTCCAAT+TGG - chr4_3:70012035-70012054 Msa0659640:intron 35.0%
! GGCAAAAAAACATTTGTTGC+AGG - chr4_3:70012056-70012075 Msa0659640:intron 35.0%
!! ACTCTGGTTCATTTTCAGAT+TGG + chr4_3:70012155-70012174 None:intergenic 35.0%
AGATTCTCTTGTTCTAACTC+TGG + chr4_3:70012171-70012190 None:intergenic 35.0%
! TTTTATCGGCAATTGTGCTT+AGG + chr4_3:70012291-70012310 None:intergenic 35.0%
!!! ACAAGAGATCAGTTTTGAAC+AGG - chr4_3:70012433-70012452 Msa0659640:CDS 35.0%
GTGTCTTGCTTCAACTTATA+TGG + chr4_3:70012672-70012691 None:intergenic 35.0%
CTTATTGCACACAAGTTTGA+TGG + chr4_3:70012876-70012895 None:intergenic 35.0%
! CAAATTATATCATCTGGCTC+TGG - chr4_3:70012966-70012985 Msa0659640:CDS 35.0%
TAATCAAAGGTCAAGAGTTC+CGG - chr4_3:70013049-70013068 Msa0659640:intron 35.0%
! ATTTGTTGCTGAATATGGTC+AGG - chr4_3:70013115-70013134 Msa0659640:intron 35.0%
TTACAAATACCGCAAACCAA+AGG - chr4_3:70013256-70013275 Msa0659640:intron 35.0%
TACAAATACCGCAAACCAAA+GGG - chr4_3:70013257-70013276 Msa0659640:intron 35.0%
GGACAATCTTGAAAATTTGC+AGG - chr4_3:70013286-70013305 Msa0659640:intron 35.0%
TGGCAAGTAGCAACTAAAAA+TGG + chr4_3:70013336-70013355 None:intergenic 35.0%
ACATGTGTAACATCGTTTAC+AGG - chr4_3:70013439-70013458 Msa0659640:intron 35.0%
TAAGTAGATTTCAGAGATGC+TGG - chr4_3:70013496-70013515 Msa0659640:CDS 35.0%
AAGTAGATTTCAGAGATGCT+GGG - chr4_3:70013497-70013516 Msa0659640:CDS 35.0%
TTCTACTGGGCATAAATGAT+GGG + chr4_3:70013530-70013549 None:intergenic 35.0%
TTTCTACTGGGCATAAATGA+TGG + chr4_3:70013531-70013550 None:intergenic 35.0%
CGTTCAAATGACTTTCTACT+GGG + chr4_3:70013543-70013562 None:intergenic 35.0%
TCGTTCAAATGACTTTCTAC+TGG + chr4_3:70013544-70013563 None:intergenic 35.0%
AGAAAGTCATTTGAACGAGT+TGG - chr4_3:70013546-70013565 Msa0659640:CDS 35.0%
! CATTTTTCTTATCCTTGCCA+AGG + chr4_3:70013825-70013844 None:intergenic 35.0%
!! TATCTACATCTGCTGATTCT+CGG + chr4_3:70013852-70013871 None:intergenic 35.0%
GCATACAGAACTAAAAGAGT+TGG - chr4_3:70013924-70013943 Msa0659640:five_prime_UTR 35.0%
TAAGCAAGAATGTACAAGGA+AGG + chr4_3:70014041-70014060 None:intergenic 35.0%
CACCCTTCAATAGCAAAATA+TGG - chr4_3:70014147-70014166 Msa0659640:five_prime_UTR 35.0%
!!! CAGCCATATTTTGCTATTGA+AGG + chr4_3:70014153-70014172 None:intergenic 35.0%
TACTGATGCCATGTACTTAT+TGG - chr4_3:70014197-70014216 Msa0659640:five_prime_UTR 35.0%
GAGACAGACTATTTAATCCT+AGG - chr4_3:70014256-70014275 Msa0659640:five_prime_UTR 35.0%
GGACTTCAGTTCAAATTAAG+GGG - chr4_3:70014277-70014296 Msa0659640:five_prime_UTR 35.0%
AATTTCAGCTGTGGGATTAT+AGG + chr4_3:70014396-70014415 None:intergenic 35.0%
AGTCATACAATTTCAGCTGT+GGG + chr4_3:70014404-70014423 None:intergenic 35.0%
GATGATGTTTCATGGCATGT+TGG + chr4_3:70009999-70010018 None:intergenic 40.0%
TGTAAACCCAGAAGCCATTT+AGG - chr4_3:70010221-70010240 Msa0659640:three_prime_UTR 40.0%
TTTCCACCTAAATGGCTTCT+GGG + chr4_3:70010230-70010249 None:intergenic 40.0%
ATTTCCACCTAAATGGCTTC+TGG + chr4_3:70010231-70010250 None:intergenic 40.0%
ACCATATCCTTCCAGGAAAT+GGG + chr4_3:70010797-70010816 None:intergenic 40.0%
AACCATATCCTTCCAGGAAA+TGG + chr4_3:70010798-70010817 None:intergenic 40.0%
AGGATATGGTTAGAGCAAAG+AGG - chr4_3:70010807-70010826 Msa0659640:intron 40.0%
!!! CATTGAAGCTCGTGTTGTTT+TGG - chr4_3:70010854-70010873 Msa0659640:CDS 40.0%
TTCTATGTGTGACTGAGAAG+TGG - chr4_3:70010969-70010988 Msa0659640:intron 40.0%
AAGTGGATATCATTGAAGGG+TGG - chr4_3:70010986-70011005 Msa0659640:intron 40.0%
! GGTCTGTAAAATCTGGAACA+AGG - chr4_3:70011220-70011239 Msa0659640:CDS 40.0%
CCTGCAAAAAGCAGAATTGA+AGG + chr4_3:70011324-70011343 None:intergenic 40.0%
!!! CCTTCAATTCTGCTTTTTGC+AGG - chr4_3:70011321-70011340 Msa0659640:CDS 40.0%
!! TCCCAGCTATTTTCTTGGAA+AGG - chr4_3:70011396-70011415 Msa0659640:CDS 40.0%
CTTGGAAAGGATTGTCAGAT+CGG - chr4_3:70011409-70011428 Msa0659640:CDS 40.0%
! GTTTTATGCAAGTCGTCTTC+TGG + chr4_3:70011509-70011528 None:intergenic 40.0%
AAACCTTCTTTATCCTGACC+AGG + chr4_3:70011602-70011621 None:intergenic 40.0%
TGGTCAGGATAAAGAAGGTT+TGG - chr4_3:70011601-70011620 Msa0659640:intron 40.0%
GGTTTGGACACTTCAATTTC+CGG - chr4_3:70011617-70011636 Msa0659640:intron 40.0%
!! CCAATTGCTGTTTAACTCAC+TGG + chr4_3:70011660-70011679 None:intergenic 40.0%
CCAGTGAGTTAAACAGCAAT+TGG - chr4_3:70011657-70011676 Msa0659640:intron 40.0%
CCAAAAGTCCATCAAATCTG+CGG + chr4_3:70011742-70011761 None:intergenic 40.0%
ACATTCCATACATCACGAAC+AGG + chr4_3:70011909-70011928 None:intergenic 40.0%
GAAACACGCATTACTTACTC+AGG + chr4_3:70011954-70011973 None:intergenic 40.0%
CAATAAAGTCCGCATTCTTC+AGG - chr4_3:70012123-70012142 Msa0659640:intron 40.0%
TGCTAGCAAGCATAATACAG+TGG + chr4_3:70012219-70012238 None:intergenic 40.0%
! AATATGCAGGAAGGGTGTAA+AGG - chr4_3:70012353-70012372 Msa0659640:intron 40.0%
GTGTAAAGGCCTGCTTTATA+TGG - chr4_3:70012367-70012386 Msa0659640:intron 40.0%
! CATGAAGCACCATATAAAGC+AGG + chr4_3:70012379-70012398 None:intergenic 40.0%
!!! ATCAGTTTTGAACAGGCTGA+AGG - chr4_3:70012440-70012459 Msa0659640:CDS 40.0%
TCGACTCATTCCATGGAAAA+TGG - chr4_3:70012468-70012487 Msa0659640:CDS 40.0%
AAATGGACGTTTGAGCAACT+AGG - chr4_3:70012485-70012504 Msa0659640:CDS 40.0%
!! GTTCCTTTCTGAAGCTATCA+TGG - chr4_3:70012562-70012581 Msa0659640:intron 40.0%
CTTCCATGATAGCTTCAGAA+AGG + chr4_3:70012568-70012587 None:intergenic 40.0%
!! TTCTGAAGCTATCATGGAAG+AGG - chr4_3:70012568-70012587 Msa0659640:intron 40.0%
TAAGAGACTACGTTGAGAAC+CGG - chr4_3:70012892-70012911 Msa0659640:CDS 40.0%
CAGGAAATTGTGATGCTTTC+CGG + chr4_3:70012914-70012933 None:intergenic 40.0%
GTATTCTGCTCACAAACTTC+AGG + chr4_3:70012933-70012952 None:intergenic 40.0%
AATCAAAGGTCAAGAGTTCC+GGG - chr4_3:70013050-70013069 Msa0659640:intron 40.0%
TTGCTGAATATGGTCAGGAA+GGG - chr4_3:70013120-70013139 Msa0659640:intron 40.0%
TGGAAGAGTGGATATTGAGA+AGG - chr4_3:70013175-70013194 Msa0659640:CDS 40.0%
AGCTAGAGAGAGGTTCATTA+TGG + chr4_3:70013237-70013256 None:intergenic 40.0%
GGTATTTGTAAGCTAGAGAG+AGG + chr4_3:70013247-70013266 None:intergenic 40.0%
TCTTGAAAATTTGCAGGACG+AGG - chr4_3:70013292-70013311 Msa0659640:intron 40.0%
GACAATGACATGATGAAGGA+TGG - chr4_3:70013378-70013397 Msa0659640:intron 40.0%
AGTAGATTTCAGAGATGCTG+GGG - chr4_3:70013498-70013517 Msa0659640:CDS 40.0%
!! AGTCATTTGAACGAGTTGGT+AGG - chr4_3:70013550-70013569 Msa0659640:CDS 40.0%
GTTTGCGTTGCTTACTTTCA+AGG - chr4_3:70013606-70013625 Msa0659640:CDS 40.0%
TATCGATGTAACATGCCACA+TGG - chr4_3:70013630-70013649 Msa0659640:exon 40.0%
TTGGGCTTAGCAGTAGATAA+TGG - chr4_3:70013680-70013699 Msa0659640:five_prime_UTR 40.0%
AAGGAGAAAAAGAACCAGAC+AGG - chr4_3:70013792-70013811 Msa0659640:five_prime_UTR 40.0%
TTTCTCAAGACACACACAAG+TGG - chr4_3:70013902-70013921 Msa0659640:five_prime_UTR 40.0%
GTGCTAAGCAAGAATGTACA+AGG + chr4_3:70014045-70014064 None:intergenic 40.0%
CAATAGCAAAATATGGCTGC+TGG - chr4_3:70014154-70014173 Msa0659640:five_prime_UTR 40.0%
TATTGCTATGACAGTTTGCG+TGG - chr4_3:70014359-70014378 Msa0659640:five_prime_UTR 40.0%
GAGTCATACAATTTCAGCTG+TGG + chr4_3:70014405-70014424 None:intergenic 40.0%
GTTTCATGGCATGTTGGCAT+AGG + chr4_3:70009993-70010012 None:intergenic 45.0%
TGAGTGTGAGTGTGTGAAGA+AGG + chr4_3:70010040-70010059 None:intergenic 45.0%
! AGGAAGAGCGTAGAGAAAGT+GGG + chr4_3:70010115-70010134 None:intergenic 45.0%
! AAGGAAGAGCGTAGAGAAAG+TGG + chr4_3:70010116-70010135 None:intergenic 45.0%
TTTCCCTCGCAATTTGCACA+AGG - chr4_3:70010172-70010191 Msa0659640:three_prime_UTR 45.0%
TTCCCTCGCAATTTGCACAA+GGG - chr4_3:70010173-70010192 Msa0659640:three_prime_UTR 45.0%
GGGTTTACACACTGTTGTTG+AGG + chr4_3:70010210-70010229 None:intergenic 45.0%
AAACCCAGAAGCCATTTAGG+TGG - chr4_3:70010224-70010243 Msa0659640:three_prime_UTR 45.0%
GAAGCTCACAGTTAACCTCA+CGG + chr4_3:70010292-70010311 None:intergenic 45.0%
GGTTAACTGTGAGCTTCAAG+TGG - chr4_3:70010295-70010314 Msa0659640:three_prime_UTR 45.0%
GTGAGCTTCAAGTGGTTTCT+TGG - chr4_3:70010303-70010322 Msa0659640:three_prime_UTR 45.0%
AGCTTCAAGTGGTTTCTTGG+AGG - chr4_3:70010306-70010325 Msa0659640:three_prime_UTR 45.0%
GCTTCAAGTGGTTTCTTGGA+GGG - chr4_3:70010307-70010326 Msa0659640:three_prime_UTR 45.0%
AAGTGGTTTCTTGGAGGGAA+CGG - chr4_3:70010312-70010331 Msa0659640:three_prime_UTR 45.0%
TGCTCTAACCATATCCTTCC+AGG + chr4_3:70010804-70010823 None:intergenic 45.0%
GAAACTGACAAATTGGCACC+TGG - chr4_3:70011581-70011600 Msa0659640:intron 45.0%
TTTAACTCACTGGAAGACGC+AGG + chr4_3:70011650-70011669 None:intergenic 45.0%
CTACAACACAAGGCTTGTCA+AGG + chr4_3:70011706-70011725 None:intergenic 45.0%
GTTCATCTCCGCAGATTTGA+TGG - chr4_3:70011731-70011750 Msa0659640:intron 45.0%
!!! CCGCAGATTTGATGGACTTT+TGG - chr4_3:70011739-70011758 Msa0659640:intron 45.0%
AAGCTCCTGTTCGTGATGTA+TGG - chr4_3:70011901-70011920 Msa0659640:CDS 45.0%
AAGTCCGCATTCTTCAGGTA+CGG - chr4_3:70012128-70012147 Msa0659640:intron 45.0%
AGCAAGCATAATACAGTGGC+AGG + chr4_3:70012215-70012234 None:intergenic 45.0%
! GCTCAAACGTCCATTTTCCA+TGG + chr4_3:70012481-70012500 None:intergenic 45.0%
! CACACTGCTAAAGTACTCTG+TGG - chr4_3:70012517-70012536 Msa0659640:intron 45.0%
TCAATATCCCTCTGTAGTCC+CGG + chr4_3:70013071-70013090 None:intergenic 45.0%
GTTGCTGAATATGGTCAGGA+AGG - chr4_3:70013119-70013138 Msa0659640:intron 45.0%
AGGAAGGGTTTATGCCTATG+AGG - chr4_3:70013135-70013154 Msa0659640:intron 45.0%
TGAGAAGGCTATAACTCGCA+TGG - chr4_3:70013190-70013209 Msa0659640:CDS 45.0%
GAGAAGGCTATAACTCGCAT+GGG - chr4_3:70013191-70013210 Msa0659640:CDS 45.0%
AGATTGTCCCAGTAACCCTT+TGG + chr4_3:70013275-70013294 None:intergenic 45.0%
GTAGATTTCAGAGATGCTGG+GGG - chr4_3:70013499-70013518 Msa0659640:CDS 45.0%
TTCTCGCCTTCTATCTCTCA+AGG - chr4_3:70013768-70013787 Msa0659640:five_prime_UTR 45.0%
TCCTTGCCTTGAGAGATAGA+AGG + chr4_3:70013777-70013796 None:intergenic 45.0%
TAGCAAAATATGGCTGCTGG+TGG - chr4_3:70014157-70014176 Msa0659640:five_prime_UTR 45.0%
AGCAAAATATGGCTGCTGGT+GGG - chr4_3:70014158-70014177 Msa0659640:five_prime_UTR 45.0%
! TCCTTTCACTTGGCGCATTT+TGG - chr4_3:70014230-70014249 Msa0659640:five_prime_UTR 45.0%
TCCAAAATGCGCCAAGTGAA+AGG + chr4_3:70014234-70014253 None:intergenic 45.0%
!!! TTTTCAAAAAAAAAAAAAAA+AGG + chr4_3:70012709-70012728 None:intergenic 5.0%
!! ATATAAATATATTTATACAT+TGG - chr4_3:70013978-70013997 Msa0659640:five_prime_UTR 5.0%
!!! GCATTGTGGCCACTGGTTTT+TGG + chr4_3:70009963-70009982 None:intergenic 50.0%
TGCCCTTGTGCAAATTGCGA+GGG + chr4_3:70010178-70010197 None:intergenic 50.0%
ATGCCCTTGTGCAAATTGCG+AGG + chr4_3:70010179-70010198 None:intergenic 50.0%
AGAAGAAGAAGGTGACCGTG+AGG - chr4_3:70010274-70010293 Msa0659640:three_prime_UTR 50.0%
TTGGAGGGAACGGAGAGTTA+AGG - chr4_3:70010322-70010341 Msa0659640:three_prime_UTR 50.0%
CGTATTCCTTGCCCATTTCC+TGG - chr4_3:70010783-70010802 Msa0659640:intron 50.0%
TTCCTTGCCCATTTCCTGGA+AGG - chr4_3:70010787-70010806 Msa0659640:intron 50.0%
ATCCTTCCAGGAAATGGGCA+AGG + chr4_3:70010792-70010811 None:intergenic 50.0%
GCCCATTTCCTGGAAGGATA+TGG - chr4_3:70010793-70010812 Msa0659640:intron 50.0%
GCTAAGGCTCGTAGATTCAC+AGG + chr4_3:70011440-70011459 None:intergenic 50.0%
! ATGCAAGTCGTCTTCTGGCT+GGG + chr4_3:70011504-70011523 None:intergenic 50.0%
TATGCAAGTCGTCTTCTGGC+TGG + chr4_3:70011505-70011524 None:intergenic 50.0%
TGACAAATTGGCACCTGGTC+AGG - chr4_3:70011586-70011605 Msa0659640:intron 50.0%
GCACCTGGTCAGGATAAAGA+AGG - chr4_3:70011596-70011615 Msa0659640:intron 50.0%
TGGTCCGTACCTGAAGAATG+CGG + chr4_3:70012135-70012154 None:intergenic 50.0%
TATGGTGCTTCATGCTCGTG+TGG - chr4_3:70012385-70012404 Msa0659640:intron 50.0%
GGTGACTTCGACTCATTCCA+TGG - chr4_3:70012461-70012480 Msa0659640:CDS 50.0%
AAGAGTTCCGGGACTACAGA+GGG - chr4_3:70013061-70013080 Msa0659640:intron 50.0%
TGCCTATGAGGAAGCAGCTT+CGG - chr4_3:70013147-70013166 Msa0659640:CDS 50.0%
AAGGCTATAACTCGCATGGG+TGG - chr4_3:70013194-70013213 Msa0659640:CDS 50.0%
ACCGCAAACCAAAGGGTTAC+TGG - chr4_3:70013264-70013283 Msa0659640:intron 50.0%
!! CCCAGTAACCCTTTGGTTTG+CGG + chr4_3:70013268-70013287 None:intergenic 50.0%
CCGCAAACCAAAGGGTTACT+GGG - chr4_3:70013265-70013284 Msa0659640:intron 50.0%
ATTTCAGAGATGCTGGGGGA+TGG - chr4_3:70013503-70013522 Msa0659640:CDS 50.0%
! CAGGCCGCTTTGATATTGCA+CGG - chr4_3:70013713-70013732 Msa0659640:five_prime_UTR 50.0%
! AGGCCGCTTTGATATTGCAC+GGG - chr4_3:70013714-70013733 Msa0659640:five_prime_UTR 50.0%
! AAAGTGGGGTGGACTTCATG+AGG - chr4_3:70013744-70013763 Msa0659640:five_prime_UTR 50.0%
GCCTTCTATCTCTCAAGGCA+AGG - chr4_3:70013773-70013792 Msa0659640:five_prime_UTR 50.0%
ACCAGACAGGACAACAACCT+TGG - chr4_3:70013805-70013824 Msa0659640:five_prime_UTR 50.0%
ACAGGACAACAACCTTGGCA+AGG - chr4_3:70013810-70013829 Msa0659640:five_prime_UTR 50.0%
! GCATAGGAGTGCGAGCATTG+TGG + chr4_3:70009977-70009996 None:intergenic 55.0%
! TGCAAGTCGTCTTCTGGCTG+GGG + chr4_3:70011503-70011522 None:intergenic 55.0%
GGAAGACGCAGGCAATGAAC+CGG + chr4_3:70011639-70011658 None:intergenic 55.0%
CAAGAGTTCCGGGACTACAG+AGG - chr4_3:70013060-70013079 Msa0659640:intron 55.0%
AGCCGAAGCTGCTTCCTCAT+AGG + chr4_3:70013152-70013171 None:intergenic 55.0%
GCGCCCGTGCAATATCAAAG+CGG + chr4_3:70013720-70013739 None:intergenic 55.0%
CTTTGATATTGCACGGGCGC+TGG - chr4_3:70013720-70013739 Msa0659640:five_prime_UTR 55.0%
GCCAAGGTTGTTGTCCTGTC+TGG + chr4_3:70013809-70013828 None:intergenic 55.0%
! AGTGCGAGCATTGTGGCCAC+TGG + chr4_3:70009970-70009989 None:intergenic 60.0%
AGGAAGCAGCTTCGGCTGCA+TGG - chr4_3:70013155-70013174 Msa0659640:CDS 60.0%
GCTTCGGCTGCATGGAAGAG+TGG - chr4_3:70013163-70013182 Msa0659640:CDS 60.0%
!! TTGCACGGGCGCTGGAAAAG+TGG - chr4_3:70013728-70013747 Msa0659640:five_prime_UTR 60.0%
!! TGCACGGGCGCTGGAAAAGT+GGG - chr4_3:70013729-70013748 Msa0659640:five_prime_UTR 60.0%
!! GCACGGGCGCTGGAAAAGTG+GGG - chr4_3:70013730-70013749 Msa0659640:five_prime_UTR 65.0%
!! CGGGCGCTGGAAAAGTGGGG+TGG - chr4_3:70013733-70013752 Msa0659640:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 70009948 70014431 70009948 ID=Msa0659640;Name=Msa0659640
chr4_3 mRNA 70009948 70014431 70009948 ID=Msa0659640-mRNA-1;Parent=Msa0659640;Name=Msa0659640-mRNA-1;_AED=0.04;_eAED=0.04;_QI=790|1|1|1|1|1|9|465|614
chr4_3 exon 70009948 70010663 70009948 ID=Msa0659640-mRNA-1:exon:20707;Parent=Msa0659640-mRNA-1
chr4_3 exon 70010812 70010884 70010812 ID=Msa0659640-mRNA-1:exon:20706;Parent=Msa0659640-mRNA-1
chr4_3 exon 70011066 70011524 70011066 ID=Msa0659640-mRNA-1:exon:20705;Parent=Msa0659640-mRNA-1
chr4_3 exon 70011790 70012017 70011790 ID=Msa0659640-mRNA-1:exon:20704;Parent=Msa0659640-mRNA-1
chr4_3 exon 70012235 70012301 70012235 ID=Msa0659640-mRNA-1:exon:20703;Parent=Msa0659640-mRNA-1
chr4_3 exon 70012424 70012524 70012424 ID=Msa0659640-mRNA-1:exon:20702;Parent=Msa0659640-mRNA-1
chr4_3 exon 70012619 70013036 70012619 ID=Msa0659640-mRNA-1:exon:20701;Parent=Msa0659640-mRNA-1
chr4_3 exon 70013138 70013223 70013138 ID=Msa0659640-mRNA-1:exon:20700;Parent=Msa0659640-mRNA-1
chr4_3 exon 70013480 70014431 70013480 ID=Msa0659640-mRNA-1:exon:20699;Parent=Msa0659640-mRNA-1
chr4_3 five_prime_UTR 70013642 70014431 70013642 ID=Msa0659640-mRNA-1:five_prime_utr;Parent=Msa0659640-mRNA-1
chr4_3 CDS 70013480 70013641 70013480 ID=Msa0659640-mRNA-1:cds;Parent=Msa0659640-mRNA-1
chr4_3 CDS 70013138 70013223 70013138 ID=Msa0659640-mRNA-1:cds;Parent=Msa0659640-mRNA-1
chr4_3 CDS 70012619 70013036 70012619 ID=Msa0659640-mRNA-1:cds;Parent=Msa0659640-mRNA-1
chr4_3 CDS 70012424 70012524 70012424 ID=Msa0659640-mRNA-1:cds;Parent=Msa0659640-mRNA-1
chr4_3 CDS 70012235 70012301 70012235 ID=Msa0659640-mRNA-1:cds;Parent=Msa0659640-mRNA-1
chr4_3 CDS 70011790 70012017 70011790 ID=Msa0659640-mRNA-1:cds;Parent=Msa0659640-mRNA-1
chr4_3 CDS 70011066 70011524 70011066 ID=Msa0659640-mRNA-1:cds;Parent=Msa0659640-mRNA-1
chr4_3 CDS 70010812 70010884 70010812 ID=Msa0659640-mRNA-1:cds;Parent=Msa0659640-mRNA-1
chr4_3 CDS 70010413 70010663 70010413 ID=Msa0659640-mRNA-1:cds;Parent=Msa0659640-mRNA-1
chr4_3 three_prime_UTR 70009948 70010412 70009948 ID=Msa0659640-mRNA-1:three_prime_utr;Parent=Msa0659640-mRNA-1
Gene Sequence

>Msa0659640

ATGCAATATGTGAATAATATGAGAGTTGTTTTTGTTGTTAGTGGGCGTATTCCTTGCCCATTTCCTGGAAGGATATGGTTAGAGCAAAGAGGATTTCAAAGGGCAATGTATTGGCACATTGAAGCTCGTGTTGTTTTGGATCTTCAAGAATTCCTCAATTCTGAATGGGATCGAGAACTTCATTTTTCAATGGTTGATGGAGACTTTAAGAAGTTTGAGGGAAAATGGTCTGTAAAATCTGGAACAAGGTCATCATCAACTAATTTATCTTATGAGGTTAATGTGATACCAAGATTCAATTTCCCAGCTATTTTCTTGGAAAGGATTGTCAGATCGGATCTTCCTGTGAATCTACGAGCCTTAGCATATAGAGTTGAAAGGAATCTTTTGGGGAATCAGAAACTTCCCCAGCCAGAAGACGACTTGCATAAAACTTCTTTGGTTGTTAATGGATCTTCTGTCAAAAAGATAAATGGTTCTTTATGTGAAACTGACAAATTGGCACCTGGTCAGGATAAAGAAGGTTTGGACACTTCAATTTCCGGTTCATTGCCTGCGTCTTCCAGTGAGTTAAACAGCAATTGGGGTATATTTGGAAAAGTTTGTAGCCTTGACAAGCCTTGTGTTGTAGATGAAGTTCATCTCCGCAGATTTGATGGACTTTTGGAAAATGGAGGTGTTCATCGTTGTGTCGTTGCAAGCATAACAGTTAAAGCTCCTGTTCGTGATGTATGGAATGTTATGTCTTCGTATGAGACTCTTCCTGAGATAGTTCCAAATTTAGCAATCAGTAAGATTTTATCACGAGATAACAATAAAGTCCGCATTCTTCAGGAAGGGTGTAAAGGCCTGCTTTATATGGTGCTTCATGCTCGTGTGGTGTTAGATTTGTGTGAACAGCTAGAACAAGAGATCAGTTTTGAACAGGCTGAAGGTGACTTCGACTCATTCCATGGAAAATGGACGTTTGAGCAACTAGGAAATCATCACACACTGCTAAAGTACTCTGTGGACTCGAAAATGCGCAGAGATACGTTCCTTTCTGAAGCTATCATGGAAGAGGTCATTTATGAAGATCTGCCATCAAACTTGTGTGCAATAAGAGACTACGTTGAGAACCGGAAAGCATCACAATTTCCTGAAGTTTGTGAGCAGAATACGAATTCAGAACAACAAATTATATCATCTGGCTCTGGAGATGATAGCAACTCTAGTTCAGCTGATGATTTTTCTGATTGTAATGTTCAAAGCTCATCTAATCAAAGGTCAAGAGTTCCGGGACTACAGAGGGATATTGAAGTCCTAAAATCTGAACTCCTGAAATTTGTTGCTGAATATGGTCAGGAAGGGTTTATGCCTATGAGGAAGCAGCTTCGGCTGCATGGAAGAGTGGATATTGAGAAGGCTATAACTCGCATGGGTGGATTCAGAAAGATTGCAACCATAATGAACCTCTCTCTAGCTTACAAATACCGCAAACCAAAGGGTTACTGGGACAATCTTGAAAATTTGCAGGACGAGATAAGTAGATTTCAGAGATGCTGGGGGATGGACCCATCATTTATGCCCAGTAGAAAGTCATTTGAACGAGTTGGCCGCTTTGATATTGCACGGGCGCTGGAAAAGTGGGGTGGACTTCATGAGGTTTCTCGCCTTCTATCTCTCAAGGCAAGGAGAAAAAGAACCAGACAGGACAACAACCTTGGCAAGGATAAGAAAAATGATCACCGAGAATCAGCAGATGTAGATAGTGAGATCAATGCAGCATCTAGACCTTATATTTCTCAAGACACACACAAGTGGCATACAGAACTAAAAGAGTTGGACATAAATTGGGTTGAGTAA

Protein sequence

>Msa0659640

MQYVNNMRVVFVVSGRIPCPFPGRIWLEQRGFQRAMYWHIEARVVLDLQEFLNSEWDRELHFSMVDGDFKKFEGKWSVKSGTRSSSTNLSYEVNVIPRFNFPAIFLERIVRSDLPVNLRALAYRVERNLLGNQKLPQPEDDLHKTSLVVNGSSVKKINGSLCETDKLAPGQDKEGLDTSISGSLPASSSELNSNWGIFGKVCSLDKPCVVDEVHLRRFDGLLENGGVHRCVVASITVKAPVRDVWNVMSSYETLPEIVPNLAISKILSRDNNKVRILQEGCKGLLYMVLHARVVLDLCEQLEQEISFEQAEGDFDSFHGKWTFEQLGNHHTLLKYSVDSKMRRDTFLSEAIMEEVIYEDLPSNLCAIRDYVENRKASQFPEVCEQNTNSEQQIISSGSGDDSNSSSADDFSDCNVQSSSNQRSRVPGLQRDIEVLKSELLKFVAEYGQEGFMPMRKQLRLHGRVDIEKAITRMGGFRKIATIMNLSLAYKYRKPKGYWDNLENLQDEISRFQRCWGMDPSFMPSRKSFERVGRFDIARALEKWGGLHEVSRLLSLKARRKRTRQDNNLGKDKKNDHRESADVDSEINAASRPYISQDTHKWHTELKELDINWVE*