Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729710 | XP_003614532.1 | 77.876 | 226 | 3 | 1 | 1 | 179 | 1 | 226 | 5.47e-115 | 335 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729710 | sp|Q9FX64|HOP2_ARATH | 60.177 | 226 | 43 | 1 | 1 | 179 | 1 | 226 | 9.68e-90 | 264 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729710 | G7JZE5 | 77.876 | 226 | 3 | 1 | 1 | 179 | 1 | 226 | 2.61e-115 | 335 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040690 | Msa0729710 | 0.823625 | 1.252236e-53 | -8.615850e-47 |
| Msa0052610 | Msa0729710 | 0.809812 | 1.572809e-50 | -8.615850e-47 |
| Msa0092740 | Msa0729710 | -0.810738 | 9.928461e-51 | -8.615850e-47 |
| Msa0098470 | Msa0729710 | 0.801490 | 8.787748e-49 | -8.615850e-47 |
| Msa0618040 | Msa0729710 | 0.802037 | 6.785054e-49 | -8.615850e-47 |
| Msa0620990 | Msa0729710 | 0.812512 | 4.084030e-51 | -8.615850e-47 |
| Msa0701280 | Msa0729710 | 0.805704 | 1.174143e-49 | -8.615850e-47 |
| Msa0729710 | Msa0750920 | 0.813306 | 2.736623e-51 | -8.615850e-47 |
| Msa0729710 | Msa0763830 | 0.801187 | 1.013565e-48 | -8.615850e-47 |
| Msa0729710 | Msa0850960 | 0.811888 | 5.588844e-51 | -8.615850e-47 |
| Msa0729710 | Msa0970420 | 0.800134 | 1.662026e-48 | -8.615850e-47 |
| Msa0729710 | Msa1041520 | 0.813568 | 2.397118e-51 | -8.615850e-47 |
| Msa0729710 | Msa1104140 | 0.813751 | 2.184670e-51 | -8.615850e-47 |
| Msa0729710 | Msa1143650 | 0.822830 | 1.919852e-53 | -8.615850e-47 |
| Msa0729710 | Msa1198530 | 0.802274 | 6.064711e-49 | -8.615850e-47 |
| Msa0729710 | Msa1223330 | 0.817571 | 3.077031e-52 | -8.615850e-47 |
| Msa0729710 | Msa1252190 | 0.836570 | 8.658681e-57 | -8.615850e-47 |
| Msa0729710 | Msa1274280 | 0.811037 | 8.551596e-51 | -8.615850e-47 |
| Msa0729710 | Msa1292830 | 0.827422 | 1.578174e-54 | -8.615850e-47 |
| Msa0729710 | Msa1369150 | 0.808856 | 2.521908e-50 | -8.615850e-47 |
| Msa0729710 | Msa1374060 | 0.807505 | 4.892575e-50 | -8.615850e-47 |
| Msa0729710 | Msa1375560 | 0.800005 | 1.765136e-48 | -8.615850e-47 |
| Msa0729710 | Msa1406040 | 0.806186 | 9.297030e-50 | -8.615850e-47 |
| Msa0729710 | Msa1440260 | -0.802147 | 6.441014e-49 | -8.615850e-47 |
| Msa0137610 | Msa0729710 | -0.816391 | 5.667017e-52 | -8.615850e-47 |
| Msa0146280 | Msa0729710 | 0.812320 | 4.499463e-51 | -8.615850e-47 |
| Msa0230150 | Msa0729710 | 0.803408 | 3.535589e-49 | -8.615850e-47 |
| Msa0395870 | Msa0729710 | 0.805516 | 1.285736e-49 | -8.615850e-47 |
| Msa0307850 | Msa0729710 | 0.800340 | 1.508858e-48 | -8.615850e-47 |
| Msa0557070 | Msa0729710 | 0.835196 | 1.931199e-56 | -8.615850e-47 |
| Msa0561430 | Msa0729710 | 0.810391 | 1.179891e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729710 | MtrunA17_Chr5g0422961 | 77.876 | 226 | 3 | 1 | 1 | 179 | 1 | 226 | 5.03e-119 | 335 |
| Msa0729710 | MtrunA17_Chr4g0002081 | 75.000 | 48 | 6 | 1 | 3 | 50 | 17 | 58 | 7.49e-15 | 70.1 |
| Msa0729710 | MtrunA17_Chr5g0422951 | 70.588 | 51 | 7 | 2 | 3 | 51 | 17 | 61 | 3.28e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729710 | AT1G13330.1 | 60.177 | 226 | 43 | 1 | 1 | 179 | 1 | 226 | 9.84e-91 | 264 |
Find 69 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGGATCCCAAAGAATTTA+AGG | 0.146216 | 5_1:-37579201 | Msa0729710:intron |
| AGGCGGGAAGATTTCGTTTA+AGG | 0.166866 | 5_1:-37581314 | Msa0729710:CDS |
| CCTTCAGCGTTATCGGATTT+TGG | 0.169276 | 5_1:+37581670 | None:intergenic |
| AAAAGAAACCTTAAATTCTT+TGG | 0.192821 | 5_1:+37579193 | None:intergenic |
| AAAGAATGTTCAGGGATTTA+TGG | 0.204783 | 5_1:-37579247 | Msa0729710:CDS |
| TCCTTGTGTATTGATGTTTC+AGG | 0.220802 | 5_1:-37578728 | Msa0729710:three_prime_UTR |
| TGTGATTTGGGTAGCAAAAT+AGG | 0.266860 | 5_1:-37581426 | Msa0729710:intron |
| AAGATTTCGTTTAAGGAGTA+TGG | 0.268065 | 5_1:-37581307 | Msa0729710:intron |
| GCAAAAGTTTAATCTGAAAA+AGG | 0.280342 | 5_1:-37581371 | Msa0729710:CDS |
| GCTTCTTACCTTGCGGTATC+AGG | 0.289306 | 5_1:+37579031 | None:intergenic |
| TGTTGAGAATGGAAGAAAAT+TGG | 0.296536 | 5_1:+37581699 | None:intergenic |
| AAAGAAACCTTAAATTCTTT+GGG | 0.320146 | 5_1:+37579194 | None:intergenic |
| ACACAGCTATATAGATTATA+TGG | 0.323686 | 5_1:-37578944 | Msa0729710:three_prime_UTR |
| GAGAGTACCTTCAGCGTTAT+CGG | 0.333249 | 5_1:+37581663 | None:intergenic |
| TCAACTGCCACACGTTCTTC+TGG | 0.335666 | 5_1:+37579311 | None:intergenic |
| AAGAATGTTCAGGGATTTAT+GGG | 0.335669 | 5_1:-37579246 | Msa0729710:CDS |
| TTAAATTCTTTGGGATCCTT+AGG | 0.363696 | 5_1:+37579203 | None:intergenic |
| TCTGCTTCAGGTTCAAGAAC+TGG | 0.380712 | 5_1:-37579378 | Msa0729710:intron |
| CTGTTCCTTTGTTTCTGAGA+AGG | 0.382063 | 5_1:+37581748 | None:intergenic |
| GGAAGCGTAAAAGAATGTTC+AGG | 0.398097 | 5_1:-37579256 | Msa0729710:CDS |
| ATATAGCTGTGTCATTGATT+AGG | 0.403789 | 5_1:+37578955 | None:intergenic |
| TATTATTGTTTATATCTCTC+TGG | 0.409647 | 5_1:-37578784 | Msa0729710:three_prime_UTR |
| GCGTTGGATAGTCTTGAAAA+AGG | 0.415178 | 5_1:-37581334 | Msa0729710:CDS |
| CATTATTTACCTGCATTCTC+AGG | 0.432067 | 5_1:+37579490 | None:intergenic |
| TTCTGAGAAGGTGAATGAAA+TGG | 0.433555 | 5_1:+37581760 | None:intergenic |
| TTTGGAGCCATTGTTGAGAA+TGG | 0.444758 | 5_1:+37581688 | None:intergenic |
| CGCAAGGTAAGAAGCGGCCA+AGG | 0.470510 | 5_1:-37579023 | Msa0729710:CDS |
| TGAACATTTCAGGAGGAGCT+TGG | 0.493045 | 5_1:-37579102 | Msa0729710:intron |
| TAAATATATCACTGTCCCCT+TGG | 0.500127 | 5_1:+37579006 | None:intergenic |
| TCTGAGAAGGTGAATGAAAT+GGG | 0.501714 | 5_1:+37581761 | None:intergenic |
| ATCTCTCTGGTTACTGACAT+TGG | 0.514869 | 5_1:-37578771 | Msa0729710:three_prime_UTR |
| TGTAAAGACTTACATTACAT+TGG | 0.522428 | 5_1:+37578882 | None:intergenic |
| GTTACGTGGAGGTGTTACTT+TGG | 0.529557 | 5_1:-37579339 | Msa0729710:CDS |
| ATTCACCTTCTCAGAAACAA+AGG | 0.559522 | 5_1:-37581753 | Msa0729710:five_prime_UTR |
| CTTGGCCGCTTCTTACCTTG+CGG | 0.561944 | 5_1:+37579024 | None:intergenic |
| GGCAGTTGAGAGTATGTTGT+CGG | 0.563137 | 5_1:-37579297 | Msa0729710:CDS |
| AGAAGTTGACCTGAGAATGC+AGG | 0.568107 | 5_1:-37579499 | Msa0729710:intron |
| CTAGAATATGATGAAGATGT+TGG | 0.573213 | 5_1:-37579078 | Msa0729710:CDS |
| TGAGAATGGAAGAAAATTGG+CGG | 0.576653 | 5_1:+37581702 | None:intergenic |
| GGCGGCGATACAGAAAGCGT+TGG | 0.580627 | 5_1:-37581350 | Msa0729710:CDS |
| GTGGAGGTGTTACTTTGGTG+AGG | 0.581557 | 5_1:-37579334 | Msa0729710:CDS |
| GAAGCGTAAAAGAATGTTCA+GGG | 0.583026 | 5_1:-37579255 | Msa0729710:CDS |
| ATTGCAATCAAATTTAACAA+TGG | 0.595660 | 5_1:-37579538 | Msa0729710:CDS |
| CCTCACTGAGAACTCACCTA+AGG | 0.600047 | 5_1:-37579219 | Msa0729710:CDS |
| CCAAAATCCGATAACGCTGA+AGG | 0.602208 | 5_1:-37581670 | Msa0729710:intron |
| GAGAATGGAAGAAAATTGGC+GGG | 0.603178 | 5_1:+37581703 | None:intergenic |
| AAGACTAACTCACCAGGGCA+TGG | 0.605848 | 5_1:-37578818 | Msa0729710:three_prime_UTR |
| AGCTGTGTCATTGATTAGGA+AGG | 0.606718 | 5_1:+37578959 | None:intergenic |
| GCAAGGTAAGAAGCGGCCAA+GGG | 0.610905 | 5_1:-37579022 | Msa0729710:CDS |
| GCCGCTGAATACGCAAAATG+TGG | 0.625677 | 5_1:-37581404 | Msa0729710:CDS |
| TTCAGTGACCTGATACCGCA+AGG | 0.632104 | 5_1:-37579039 | Msa0729710:CDS |
| CTTAGGTGAGTTCTCAGTGA+GGG | 0.632171 | 5_1:+37579220 | None:intergenic |
| CAAGGTAAGAAGCGGCCAAG+GGG | 0.641563 | 5_1:-37579021 | Msa0729710:CDS |
| GTGATATATTTATCGAAACT+CGG | 0.646659 | 5_1:-37578995 | Msa0729710:exon |
| GCCTGAAACATCAATACACA+AGG | 0.647708 | 5_1:+37578727 | None:intergenic |
| TGATACCGCAAGGTAAGAAG+CGG | 0.649173 | 5_1:-37579029 | Msa0729710:CDS |
| CGTGTTGAACTTCGTCAACG+AGG | 0.649248 | 5_1:-37581559 | Msa0729710:intron |
| TGAGTTAGTCTTGTAAAAGA+CGG | 0.653805 | 5_1:+37578829 | None:intergenic |
| CGGAGAAAATAAGTCAGTGG+AGG | 0.655882 | 5_1:-37579277 | Msa0729710:CDS |
| GCTGAATACGCAAAATGTGG+CGG | 0.678440 | 5_1:-37581401 | Msa0729710:CDS |
| GGTGAGGCCAGAAGAACGTG+TGG | 0.679059 | 5_1:-37579318 | Msa0729710:CDS |
| GTTAGTCTTGTAAAAGACGG+TGG | 0.681280 | 5_1:+37578832 | None:intergenic |
| TGTCGGAGAAAATAAGTCAG+TGG | 0.683795 | 5_1:-37579280 | Msa0729710:CDS |
| ATATTTATCGAAACTCGGAA+CGG | 0.692673 | 5_1:-37578990 | Msa0729710:three_prime_UTR |
| TTTACAAGACTAACTCACCA+GGG | 0.693666 | 5_1:-37578823 | Msa0729710:three_prime_UTR |
| ATTGCACTGAGACCATGCCC+TGG | 0.696662 | 5_1:+37578806 | None:intergenic |
| ATCAAGTTGAACAAGTTACG+TGG | 0.698323 | 5_1:-37579353 | Msa0729710:CDS |
| AAGTTGAACAAGTTACGTGG+AGG | 0.731034 | 5_1:-37579350 | Msa0729710:CDS |
| CCTTAGGTGAGTTCTCAGTG+AGG | 0.748594 | 5_1:+37579219 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTGTGTATATTTTAACAA+CGG | + | chr5_1:37580587-37580606 | None:intergenic | 15.0% |
| !! | AATTAAAGAGAGAAAATGTT+AGG | + | chr5_1:37578887-37578906 | None:intergenic | 20.0% |
| !!! | ATTGTTTTGTTTTTGTGATT+TGG | - | chr5_1:37579041-37579060 | Msa0729710:CDS | 20.0% |
| !!! | TTGTTTTGTTTTTGTGATTT+GGG | - | chr5_1:37579042-37579061 | Msa0729710:CDS | 20.0% |
| !!! | TTTGGTAATGTAATTGAATT+GGG | - | chr5_1:37579352-37579371 | Msa0729710:CDS | 20.0% |
| !!! | TTATTTGAGTGTTTTGATTT+GGG | - | chr5_1:37579407-37579426 | Msa0729710:intron | 20.0% |
| !!! | AGATTAATTACAGTGTTTTA+AGG | + | chr5_1:37579840-37579859 | None:intergenic | 20.0% |
| !!! | TCTTTTTAAATCACTCAAAT+TGG | + | chr5_1:37580262-37580281 | None:intergenic | 20.0% |
| !! | AATTTGAGTGATTTAAAAAG+AGG | - | chr5_1:37580261-37580280 | Msa0729710:intron | 20.0% |
| !! | GAGTAGTTTAATAATTGTTA+TGG | - | chr5_1:37580329-37580348 | Msa0729710:intron | 20.0% |
| !! | TCATTAATCAAATATAGTAC+TGG | + | chr5_1:37580510-37580529 | None:intergenic | 20.0% |
| !! | ATTTGATTAATGAAAAGAGA+TGG | - | chr5_1:37580517-37580536 | Msa0729710:intron | 20.0% |
| !! | ATTTCAAATAACAATCTAGT+AGG | - | chr5_1:37580817-37580836 | Msa0729710:intron | 20.0% |
| !! | ATTGCAATCAAATTTAACAA+TGG | - | chr5_1:37580942-37580961 | Msa0729710:intron | 20.0% |
| !!! | ATTGTTGTTCAATTAAGATA+TGG | - | chr5_1:37581063-37581082 | Msa0729710:intron | 20.0% |
| !! | AAAGAAACCTTAAATTCTTT+GGG | + | chr5_1:37581289-37581308 | None:intergenic | 20.0% |
| !! | AAAAGAAACCTTAAATTCTT+TGG | + | chr5_1:37581290-37581309 | None:intergenic | 20.0% |
| !! | GTTATATTAGTAGTAATAGT+AGG | + | chr5_1:37581358-37581377 | None:intergenic | 20.0% |
| !! | TATTATTGTTTATATCTCTC+TGG | - | chr5_1:37581696-37581715 | Msa0729710:exon | 20.0% |
| !!! | ATGGGTATTTTGATTTGATA+AGG | + | chr5_1:37578704-37578723 | None:intergenic | 25.0% |
| ! | AAACAAAGGAACAGAAAAAA+AGG | - | chr5_1:37578741-37578760 | Msa0729710:three_prime_UTR | 25.0% |
| ! | AACAAAGGAACAGAAAAAAA+GGG | - | chr5_1:37578742-37578761 | Msa0729710:three_prime_UTR | 25.0% |
| ! | TATGAAATGAAACGAAGAAA+TGG | + | chr5_1:37578862-37578881 | None:intergenic | 25.0% |
| !! | TCAATTAGTTTCGATTGATT+TGG | - | chr5_1:37578973-37578992 | Msa0729710:three_prime_UTR | 25.0% |
| ! | TGGTATTTATACTGTGTTTA+TGG | - | chr5_1:37578993-37579012 | Msa0729710:three_prime_UTR | 25.0% |
| ! | GCAAAAGTTTAATCTGAAAA+AGG | - | chr5_1:37579109-37579128 | Msa0729710:intron | 25.0% |
| ! | AAAGTTTAATCTGAAAAAGG+CGG | - | chr5_1:37579112-37579131 | Msa0729710:intron | 25.0% |
| !!! | GTTTGGTAATGTAATTGAAT+TGG | - | chr5_1:37579351-37579370 | Msa0729710:CDS | 25.0% |
| !!! | GTTATTTGAGTGTTTTGATT+TGG | - | chr5_1:37579406-37579425 | Msa0729710:intron | 25.0% |
| !!! | TTTTGATTTGGGTTTGTTTA+GGG | - | chr5_1:37579418-37579437 | Msa0729710:intron | 25.0% |
| !!! | TCCTGTACATTTAGTTTTTA+AGG | + | chr5_1:37579487-37579506 | None:intergenic | 25.0% |
| !!! | GTTTTAAAACGTAAATGAAC+AGG | - | chr5_1:37579625-37579644 | Msa0729710:intron | 25.0% |
| !!! | TTTAAAAGAGGTTTAAGTTG+TGG | - | chr5_1:37579739-37579758 | Msa0729710:intron | 25.0% |
| !!! | GTGTTTTAAAACCTAAATGA+TGG | - | chr5_1:37580176-37580195 | Msa0729710:intron | 25.0% |
| ! | TTAAATCACTCAAATTGGAA+TGG | + | chr5_1:37580257-37580276 | None:intergenic | 25.0% |
| ! | AGTGATTTAAAAAGAGGTTT+GGG | - | chr5_1:37580267-37580286 | Msa0729710:intron | 25.0% |
| ! | TTTCAATCAATTCAACAATC+TGG | + | chr5_1:37580481-37580500 | None:intergenic | 25.0% |
| ! | ATTAATGAAAAGAGATGGAA+CGG | - | chr5_1:37580522-37580541 | Msa0729710:intron | 25.0% |
| !! | AAAGTATCTCTCAAATTAGT+AGG | - | chr5_1:37580558-37580577 | Msa0729710:intron | 25.0% |
| !! | AATTGATGAATGTAACTTGT+TGG | - | chr5_1:37580904-37580923 | Msa0729710:intron | 25.0% |
| ! | CTAATATAACTGAACATTTC+AGG | - | chr5_1:37581368-37581387 | Msa0729710:CDS | 25.0% |
| ! | GTGATATATTTATCGAAACT+CGG | - | chr5_1:37581485-37581504 | Msa0729710:intron | 25.0% |
| ! | ACACAGCTATATAGATTATA+TGG | - | chr5_1:37581536-37581555 | Msa0729710:intron | 25.0% |
| ! | TGTAAAGACTTACATTACAT+TGG | + | chr5_1:37581601-37581620 | None:intergenic | 25.0% |
| !! | TACAATTTAGACTCAGTTTT+CGG | - | chr5_1:37581617-37581636 | Msa0729710:intron | 25.0% |
| TGTTGAGAATGGAAGAAAAT+TGG | + | chr5_1:37578784-37578803 | None:intergenic | 30.0% | |
| ! | TTTTCTTCCATTCTCAACAA+TGG | - | chr5_1:37578785-37578804 | Msa0729710:three_prime_UTR | 30.0% |
| AAGATTTCGTTTAAGGAGTA+TGG | - | chr5_1:37579173-37579192 | Msa0729710:intron | 30.0% | |
| TGATTAAGCTCTTCGTTATT+CGG | + | chr5_1:37579242-37579261 | None:intergenic | 30.0% | |
| TTAATTGATTGAACTCGATG+CGG | - | chr5_1:37579379-37579398 | Msa0729710:intron | 30.0% | |
| !!! | GTTTTGATTTGGGTTTGTTT+AGG | - | chr5_1:37579417-37579436 | Msa0729710:intron | 30.0% |
| GCCTTAAAAACTAAATGTAC+AGG | - | chr5_1:37579483-37579502 | Msa0729710:intron | 30.0% | |
| !!! | TTATTTTAGCGTTTTGATCG+CGG | - | chr5_1:37579538-37579557 | Msa0729710:CDS | 30.0% |
| AAAGTAATTCAATCATGACC+TGG | - | chr5_1:37579584-37579603 | Msa0729710:intron | 30.0% | |
| AACCAGTACTATCTATAGTT+TGG | - | chr5_1:37579671-37579690 | Msa0729710:intron | 30.0% | |
| AACCAAACTATAGATAGTAC+TGG | + | chr5_1:37579676-37579695 | None:intergenic | 30.0% | |
| CTATAGTTTGGTTATTTGAG+TGG | - | chr5_1:37579683-37579702 | Msa0729710:intron | 30.0% | |
| !!! | AATTTGAGCGGTTTTAAAAG+AGG | - | chr5_1:37579727-37579746 | Msa0729710:intron | 30.0% |
| ! | TCTTTAAAAACCGCTCAAAT+CGG | + | chr5_1:37579772-37579791 | None:intergenic | 30.0% |
| TAATTTCATCCCAATTTGAG+CGG | - | chr5_1:37579905-37579924 | Msa0729710:intron | 30.0% | |
| !!! | TGTTTTAATCCGCTCAAATT+GGG | + | chr5_1:37579917-37579936 | None:intergenic | 30.0% |
| !!! | TTGTTTTAATCCGCTCAAAT+TGG | + | chr5_1:37579918-37579937 | None:intergenic | 30.0% |
| TTATTTGAGTAGCTTAACTG+TGG | - | chr5_1:37580091-37580110 | Msa0729710:intron | 30.0% | |
| GAGTGATTTAAAAAGAGGTT+TGG | - | chr5_1:37580266-37580285 | Msa0729710:intron | 30.0% | |
| ATTGCTGAAAAAAGATGGAA+CGG | - | chr5_1:37580670-37580689 | Msa0729710:intron | 30.0% | |
| TCAAATCCTCTCAAATTTGA+GGG | + | chr5_1:37580716-37580735 | None:intergenic | 30.0% | |
| ATCAAATCCTCTCAAATTTG+AGG | + | chr5_1:37580717-37580736 | None:intergenic | 30.0% | |
| ATTCCAGTTATTGTTGAAAC+TGG | - | chr5_1:37580853-37580872 | Msa0729710:intron | 30.0% | |
| ! | TGCCTTTTTACATTGTTGAA+AGG | - | chr5_1:37581025-37581044 | Msa0729710:intron | 30.0% |
| ! | GCCTTTTTACATTGTTGAAA+GGG | - | chr5_1:37581026-37581045 | Msa0729710:intron | 30.0% |
| TCCCTTTCAACAATGTAAAA+AGG | + | chr5_1:37581030-37581049 | None:intergenic | 30.0% | |
| TTGAAAGGGAATTAGTGATT+TGG | - | chr5_1:37581040-37581059 | Msa0729710:intron | 30.0% | |
| CATCTATAAAATTCTGCTTC+AGG | - | chr5_1:37581090-37581109 | Msa0729710:intron | 30.0% | |
| AAAGAATGTTCAGGGATTTA+TGG | - | chr5_1:37581233-37581252 | Msa0729710:intron | 30.0% | |
| AAGAATGTTCAGGGATTTAT+GGG | - | chr5_1:37581234-37581253 | Msa0729710:intron | 30.0% | |
| !! | TTAAATTCTTTGGGATCCTT+AGG | + | chr5_1:37581280-37581299 | None:intergenic | 30.0% |
| TAAGGATCCCAAAGAATTTA+AGG | - | chr5_1:37581279-37581298 | Msa0729710:intron | 30.0% | |
| ATATAACTGAACATTTCAGG+AGG | - | chr5_1:37581371-37581390 | Msa0729710:CDS | 30.0% | |
| CTAGAATATGATGAAGATGT+TGG | - | chr5_1:37581402-37581421 | Msa0729710:CDS | 30.0% | |
| ATATTTATCGAAACTCGGAA+CGG | - | chr5_1:37581490-37581509 | Msa0729710:intron | 30.0% | |
| ! | ATATAGCTGTGTCATTGATT+AGG | + | chr5_1:37581528-37581547 | None:intergenic | 30.0% |
| ! | ACAATTTAGACTCAGTTTTC+GGG | - | chr5_1:37581618-37581637 | Msa0729710:intron | 30.0% |
| !! | TGAGTTAGTCTTGTAAAAGA+CGG | + | chr5_1:37581654-37581673 | None:intergenic | 30.0% |
| TCTGAGAAGGTGAATGAAAT+GGG | + | chr5_1:37578722-37578741 | None:intergenic | 35.0% | |
| ! | TTCTGAGAAGGTGAATGAAA+TGG | + | chr5_1:37578723-37578742 | None:intergenic | 35.0% |
| ATTCACCTTCTCAGAAACAA+AGG | - | chr5_1:37578727-37578746 | Msa0729710:three_prime_UTR | 35.0% | |
| TGAGAATGGAAGAAAATTGG+CGG | + | chr5_1:37578781-37578800 | None:intergenic | 35.0% | |
| ! | TGTGATTTGGGTAGCAAAAT+AGG | - | chr5_1:37579054-37579073 | Msa0729710:CDS | 35.0% |
| ! | TTGGATAGTCTTGAAAAAGG+CGG | - | chr5_1:37579149-37579168 | Msa0729710:intron | 35.0% |
| ! | TAATTTGCAAAAGCAGCTTG+AGG | - | chr5_1:37579280-37579299 | Msa0729710:CDS | 35.0% |
| AGGTATGGTTTACAATGGTT+TGG | - | chr5_1:37579334-37579353 | Msa0729710:CDS | 35.0% | |
| !! | GATTTGAGCGGTTTTTAAAG+AGG | - | chr5_1:37579771-37579790 | Msa0729710:intron | 35.0% |
| AAAAAACCGACAAAACCTCT+TGG | + | chr5_1:37579952-37579971 | None:intergenic | 35.0% | |
| !! | AGTTATTTGAGCGTTTTGAC+CGG | - | chr5_1:37579981-37580000 | Msa0729710:intron | 35.0% |
| TTCAATCAGTTGAATCATCC+AGG | + | chr5_1:37579504-37579523 | None:intergenic | 35.0% | |
| GATGATTCAACTGATTGAAC+TGG | - | chr5_1:37579505-37579524 | Msa0729710:CDS | 35.0% | |
| AACTGGTACTATCTACAGTT+TGG | - | chr5_1:37580068-37580087 | Msa0729710:intron | 35.0% | |
| ! | TGCTTTAAACCGCTCAAATT+GGG | + | chr5_1:37580123-37580142 | None:intergenic | 35.0% |
| !!! | TAGGTTTTAAAACACCGAAC+TGG | + | chr5_1:37580171-37580190 | None:intergenic | 35.0% |
| ! | TAAATGATGGAACTGTGAAC+CGG | - | chr5_1:37580189-37580208 | Msa0729710:intron | 35.0% |
| !! | ATGGTTCTATTTGAGCGTTT+TGG | - | chr5_1:37580348-37580367 | Msa0729710:intron | 35.0% |
| !!! | CTATTTGAGCGTTTTGGTTA+TGG | - | chr5_1:37580354-37580373 | Msa0729710:intron | 35.0% |
| TCAGCAATGGAAGATATCAA+TGG | + | chr5_1:37580658-37580677 | None:intergenic | 35.0% | |
| CTTCCATTGCTGAAAAAAGA+TGG | - | chr5_1:37580665-37580684 | Msa0729710:intron | 35.0% | |
| !!! | GTTCCATCTTTTTTCAGCAA+TGG | + | chr5_1:37580671-37580690 | None:intergenic | 35.0% |
| AAGTAACCCTCAAATTTGAG+AGG | - | chr5_1:37580707-37580726 | Msa0729710:intron | 35.0% | |
| TCACCAGTTTCAACAATAAC+TGG | + | chr5_1:37580859-37580878 | None:intergenic | 35.0% | |
| AGTTATTGTTGAAACTGGTG+AGG | - | chr5_1:37580858-37580877 | Msa0729710:intron | 35.0% | |
| GTTATTGTTGAAACTGGTGA+GGG | - | chr5_1:37580859-37580878 | Msa0729710:intron | 35.0% | |
| CATTATTTACCTGCATTCTC+AGG | + | chr5_1:37580993-37581012 | None:intergenic | 35.0% | |
| GAGAATGCAGGTAAATAATG+TGG | - | chr5_1:37580993-37581012 | Msa0729710:intron | 35.0% | |
| !! | ATCAAGTTGAACAAGTTACG+TGG | - | chr5_1:37581127-37581146 | Msa0729710:intron | 35.0% |
| GAAGCGTAAAAGAATGTTCA+GGG | - | chr5_1:37581225-37581244 | Msa0729710:intron | 35.0% | |
| ! | AGAACAACTATGATAGTGAC+TGG | + | chr5_1:37581316-37581335 | None:intergenic | 35.0% |
| TAAATATATCACTGTCCCCT+TGG | + | chr5_1:37581477-37581496 | None:intergenic | 35.0% | |
| ! | TTTTACAAGACTAACTCACC+AGG | - | chr5_1:37581656-37581675 | Msa0729710:intron | 35.0% |
| TTTACAAGACTAACTCACCA+GGG | - | chr5_1:37581657-37581676 | Msa0729710:intron | 35.0% | |
| ! | TCCTTGTGTATTGATGTTTC+AGG | - | chr5_1:37581752-37581771 | Msa0729710:five_prime_UTR | 35.0% |
| !! | CTGTTCCTTTGTTTCTGAGA+AGG | + | chr5_1:37578735-37578754 | None:intergenic | 40.0% |
| GAGAATGGAAGAAAATTGGC+GGG | + | chr5_1:37578780-37578799 | None:intergenic | 40.0% | |
| ! | TTTGGAGCCATTGTTGAGAA+TGG | + | chr5_1:37578795-37578814 | None:intergenic | 40.0% |
| ! | GCGTTGGATAGTCTTGAAAA+AGG | - | chr5_1:37579146-37579165 | Msa0729710:intron | 40.0% |
| ! | TGGATAGTCTTGAAAAAGGC+GGG | - | chr5_1:37579150-37579169 | Msa0729710:intron | 40.0% |
| CGAAGAGCTTAATCAGATGA+AGG | - | chr5_1:37579247-37579266 | Msa0729710:CDS | 40.0% | |
| GAGGAACAGAAGAAGGTTAT+TGG | - | chr5_1:37579299-37579318 | Msa0729710:CDS | 40.0% | |
| ACAGAAGAAGGTTATTGGTG+AGG | - | chr5_1:37579304-37579323 | Msa0729710:CDS | 40.0% | |
| GAAGCAGGTATGGTTTACAA+TGG | - | chr5_1:37579329-37579348 | Msa0729710:CDS | 40.0% | |
| ! | TTGGGTTTGTTTAGGGTTTG+AGG | - | chr5_1:37579425-37579444 | Msa0729710:intron | 40.0% |
| ! | TGGGTTTGTTTAGGGTTTGA+GGG | - | chr5_1:37579426-37579445 | Msa0729710:intron | 40.0% |
| AAAGCAGTTGAATCTTGACC+TGG | - | chr5_1:37579453-37579472 | Msa0729710:intron | 40.0% | |
| !!! | GTTTTTAAGGCGAATCATCC+AGG | + | chr5_1:37579474-37579493 | None:intergenic | 40.0% |
| !! | TTTTGATCGCGGTTTGTTTC+TGG | - | chr5_1:37579549-37579568 | Msa0729710:CDS | 40.0% |
| ATCGAACTAGCAAATCATCC+AGG | + | chr5_1:37579605-37579624 | None:intergenic | 40.0% | |
| ! | CGTTTTTCGCTCAATTTGAG+CGG | - | chr5_1:37579715-37579734 | Msa0729710:intron | 40.0% |
| ! | TGGATTTGTTCCGATTTGAG+CGG | - | chr5_1:37579759-37579778 | Msa0729710:intron | 40.0% |
| TAATTGTGACCTAGACGTTC+CGG | - | chr5_1:37579796-37579815 | Msa0729710:intron | 40.0% | |
| GACTCAACCATACATCAAAC+CGG | + | chr5_1:37579818-37579837 | None:intergenic | 40.0% | |
| ACAATTGAACCATCTCCAAG+AGG | - | chr5_1:37579934-37579953 | Msa0729710:intron | 40.0% | |
| AACGCTCAAATAACTGAACC+AGG | + | chr5_1:37579976-37579995 | None:intergenic | 40.0% | |
| !! | GTTATTTGAGCGTTTTGACC+GGG | - | chr5_1:37579982-37580001 | Msa0729710:intron | 40.0% |
| !! | TTATTTGAGCGTTTTGACCG+GGG | - | chr5_1:37579983-37580002 | Msa0729710:intron | 40.0% |
| !! | TTTTGACCGGGGTTTGTTTA+GGG | - | chr5_1:37579994-37580013 | Msa0729710:intron | 40.0% |
| AAAGCAGTTCAATCATGACC+TGG | - | chr5_1:37580029-37580048 | Msa0729710:intron | 40.0% | |
| TTAAACCGCTCAAATTGGGA+CGG | + | chr5_1:37580119-37580138 | None:intergenic | 40.0% | |
| ! | CTGCTTTAAACCGCTCAAAT+TGG | + | chr5_1:37580124-37580143 | None:intergenic | 40.0% |
| GGTTCACAGTTCCATCATTT+AGG | + | chr5_1:37580190-37580209 | None:intergenic | 40.0% | |
| ! | AGAGGTTTGGGTTTGATGTA+TGG | - | chr5_1:37580279-37580298 | Msa0729710:intron | 40.0% |
| TGGTTTCATCCCAATTTGAG+TGG | - | chr5_1:37580374-37580393 | Msa0729710:intron | 40.0% | |
| TCCAGGTATCCACTCAAATT+GGG | + | chr5_1:37580386-37580405 | None:intergenic | 40.0% | |
| AAGTTGAACAAGTTACGTGG+AGG | - | chr5_1:37581130-37581149 | Msa0729710:intron | 40.0% | |
| TGTCGGAGAAAATAAGTCAG+TGG | - | chr5_1:37581200-37581219 | Msa0729710:intron | 40.0% | |
| ! | GGAAGCGTAAAAGAATGTTC+AGG | - | chr5_1:37581224-37581243 | Msa0729710:intron | 40.0% |
| ! | AGCTGTGTCATTGATTAGGA+AGG | + | chr5_1:37581524-37581543 | None:intergenic | 40.0% |
| !! | GTTAGTCTTGTAAAAGACGG+TGG | + | chr5_1:37581651-37581670 | None:intergenic | 40.0% |
| ATCTCTCTGGTTACTGACAT+TGG | - | chr5_1:37581709-37581728 | Msa0729710:five_prime_UTR | 40.0% | |
| GCCTGAAACATCAATACACA+AGG | + | chr5_1:37581756-37581775 | None:intergenic | 40.0% | |
| ! | CCTTCAGCGTTATCGGATTT+TGG | + | chr5_1:37578813-37578832 | None:intergenic | 45.0% |
| CCAAAATCCGATAACGCTGA+AGG | - | chr5_1:37578810-37578829 | Msa0729710:three_prime_UTR | 45.0% | |
| !! | GAGAGTACCTTCAGCGTTAT+CGG | + | chr5_1:37578820-37578839 | None:intergenic | 45.0% |
| ! | GCCACATTTTGCGTATTCAG+CGG | + | chr5_1:37579080-37579099 | None:intergenic | 45.0% |
| GCTGAATACGCAAAATGTGG+CGG | - | chr5_1:37579079-37579098 | Msa0729710:CDS | 45.0% | |
| AGGCGGGAAGATTTCGTTTA+AGG | - | chr5_1:37579166-37579185 | Msa0729710:intron | 45.0% | |
| GTTATTGGTGAGGTTGAAGC+AGG | - | chr5_1:37579314-37579333 | Msa0729710:CDS | 45.0% | |
| TGATTGAACTCGATGCGGTT+TGG | - | chr5_1:37579384-37579403 | Msa0729710:intron | 45.0% | |
| ! | GGGTTTGTTTAGGGTTTGAG+GGG | - | chr5_1:37579427-37579446 | Msa0729710:intron | 45.0% |
| !! | GCGGTTTGTTTCTGGTTTGA+GGG | - | chr5_1:37579557-37579576 | Msa0729710:intron | 45.0% |
| !! | CGGTTTGTTTCTGGTTTGAG+GGG | - | chr5_1:37579558-37579577 | Msa0729710:intron | 45.0% |
| TACATCAAACCGGAACGTCT+AGG | + | chr5_1:37579808-37579827 | None:intergenic | 45.0% | |
| ! | AGACGTTCCGGTTTGATGTA+TGG | - | chr5_1:37579808-37579827 | Msa0729710:intron | 45.0% |
| !! | CCATCTCCAAGAGGTTTTGT+CGG | - | chr5_1:37579943-37579962 | Msa0729710:intron | 45.0% |
| !!! | GGTTTTGTCGGTTTTTTGCC+TGG | - | chr5_1:37579955-37579974 | Msa0729710:intron | 45.0% |
| !! | GTTTTGACCGGGGTTTGTTT+AGG | - | chr5_1:37579993-37580012 | Msa0729710:intron | 45.0% |
| ACCTGAATGATTCGCCAGTT+CGG | - | chr5_1:37580154-37580173 | Msa0729710:intron | 45.0% | |
| AACCAAAGTGAAGACAGCAC+CGG | + | chr5_1:37580211-37580230 | None:intergenic | 45.0% | |
| TCCCAATTTGAGTGGATACC+TGG | - | chr5_1:37580382-37580401 | Msa0729710:intron | 45.0% | |
| CTCCAGGTATCCACTCAAAT+TGG | + | chr5_1:37580387-37580406 | None:intergenic | 45.0% | |
| CAATTTGAGTGGATACCTGG+AGG | - | chr5_1:37580385-37580404 | Msa0729710:intron | 45.0% | |
| !! | TGGATACCTGGAGGTTTTGT+TGG | - | chr5_1:37580394-37580413 | Msa0729710:intron | 45.0% |
| ATCGAACCAACAAAACCTCC+AGG | + | chr5_1:37580403-37580422 | None:intergenic | 45.0% | |
| AGTGTCTGAAAGACTGAACC+AGG | + | chr5_1:37580427-37580446 | None:intergenic | 45.0% | |
| AGAAGTTGACCTGAGAATGC+AGG | - | chr5_1:37580981-37581000 | Msa0729710:intron | 45.0% | |
| ! | TCTGCTTCAGGTTCAAGAAC+TGG | - | chr5_1:37581102-37581121 | Msa0729710:intron | 45.0% |
| !! | GTTACGTGGAGGTGTTACTT+TGG | - | chr5_1:37581141-37581160 | Msa0729710:intron | 45.0% |
| ! | GGCAGTTGAGAGTATGTTGT+CGG | - | chr5_1:37581183-37581202 | Msa0729710:intron | 45.0% |
| CGGAGAAAATAAGTCAGTGG+AGG | - | chr5_1:37581203-37581222 | Msa0729710:intron | 45.0% | |
| CTTAGGTGAGTTCTCAGTGA+GGG | + | chr5_1:37581263-37581282 | None:intergenic | 45.0% | |
| TGAACATTTCAGGAGGAGCT+TGG | - | chr5_1:37581378-37581397 | Msa0729710:CDS | 45.0% | |
| TGATACCGCAAGGTAAGAAG+CGG | - | chr5_1:37581451-37581470 | Msa0729710:intron | 45.0% | |
| CGTGTTGAACTTCGTCAACG+AGG | - | chr5_1:37578921-37578940 | Msa0729710:three_prime_UTR | 50.0% | |
| GCCGCTGAATACGCAAAATG+TGG | - | chr5_1:37579076-37579095 | Msa0729710:CDS | 50.0% | |
| GCAGCTTGAGGAACAGAAGA+AGG | - | chr5_1:37579292-37579311 | Msa0729710:CDS | 50.0% | |
| TGGTGAGGTTGAAGCAGGTA+TGG | - | chr5_1:37579319-37579338 | Msa0729710:CDS | 50.0% | |
| !! | CGCGGTTTGTTTCTGGTTTG+AGG | - | chr5_1:37579556-37579575 | Msa0729710:intron | 50.0% |
| CCGACAAAACCTCTTGGAGA+TGG | + | chr5_1:37579946-37579965 | None:intergenic | 50.0% | |
| CTCGAACCCTAAACAAACCC+CGG | + | chr5_1:37580003-37580022 | None:intergenic | 50.0% | |
| ! | GGGGTTTGTTTAGGGTTCGA+GGG | - | chr5_1:37580002-37580021 | Msa0729710:intron | 50.0% |
| ! | GGGTTTGTTTAGGGTTCGAG+GGG | - | chr5_1:37580003-37580022 | Msa0729710:intron | 50.0% |
| TGGTTCCGTCCCAATTTGAG+CGG | - | chr5_1:37580111-37580130 | Msa0729710:intron | 50.0% | |
| ACCGAACTGGCGAATCATTC+AGG | + | chr5_1:37580158-37580177 | None:intergenic | 50.0% | |
| !! | AACCGGTGCTGTCTTCACTT+TGG | - | chr5_1:37580206-37580225 | Msa0729710:intron | 50.0% |
| !!! | GGTTTTGTTGGTTCGATGCC+TGG | - | chr5_1:37580406-37580425 | Msa0729710:intron | 50.0% |
| TGTTGAAACTGGTGAGGGCT+TGG | - | chr5_1:37580864-37580883 | Msa0729710:intron | 50.0% | |
| !! | GTGGAGGTGTTACTTTGGTG+AGG | - | chr5_1:37581146-37581165 | Msa0729710:intron | 50.0% |
| TCAACTGCCACACGTTCTTC+TGG | + | chr5_1:37581172-37581191 | None:intergenic | 50.0% | |
| CCTTAGGTGAGTTCTCAGTG+AGG | + | chr5_1:37581264-37581283 | None:intergenic | 50.0% | |
| CCTCACTGAGAACTCACCTA+AGG | - | chr5_1:37581261-37581280 | Msa0729710:intron | 50.0% | |
| TTCAGTGACCTGATACCGCA+AGG | - | chr5_1:37581441-37581460 | Msa0729710:intron | 50.0% | |
| GCTTCTTACCTTGCGGTATC+AGG | + | chr5_1:37581452-37581471 | None:intergenic | 50.0% | |
| AAGACTAACTCACCAGGGCA+TGG | - | chr5_1:37581662-37581681 | Msa0729710:intron | 50.0% | |
| ! | CGGGGTTTGTTTAGGGTTCG+AGG | - | chr5_1:37580001-37580020 | Msa0729710:intron | 55.0% |
| CTTGGCCGCTTCTTACCTTG+CGG | + | chr5_1:37581459-37581478 | None:intergenic | 55.0% | |
| GCAAGGTAAGAAGCGGCCAA+GGG | - | chr5_1:37581458-37581477 | Msa0729710:intron | 55.0% | |
| CAAGGTAAGAAGCGGCCAAG+GGG | - | chr5_1:37581459-37581478 | Msa0729710:intron | 55.0% | |
| ATTGCACTGAGACCATGCCC+TGG | + | chr5_1:37581677-37581696 | None:intergenic | 55.0% | |
| ! | GGCGGCGATACAGAAAGCGT+TGG | - | chr5_1:37579130-37579149 | Msa0729710:intron | 60.0% |
| GGTGAGGCCAGAAGAACGTG+TGG | - | chr5_1:37581162-37581181 | Msa0729710:intron | 60.0% | |
| CGCAAGGTAAGAAGCGGCCA+AGG | - | chr5_1:37581457-37581476 | Msa0729710:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 37578700 | 37581802 | 37578700 | ID=Msa0729710;Name=Msa0729710 |
| chr5_1 | mRNA | 37578700 | 37581802 | 37578700 | ID=Msa0729710-mRNA-1;Parent=Msa0729710;Name=Msa0729710-mRNA-1;_AED=0.12;_eAED=0.12;_QI=104|0.8|0.83|1|1|1|6|314|179 |
| chr5_1 | exon | 37578700 | 37579112 | 37578700 | ID=Msa0729710-mRNA-1:exon:11327;Parent=Msa0729710-mRNA-1 |
| chr5_1 | exon | 37579202 | 37579390 | 37579202 | ID=Msa0729710-mRNA-1:exon:11326;Parent=Msa0729710-mRNA-1 |
| chr5_1 | exon | 37579500 | 37579570 | 37579500 | ID=Msa0729710-mRNA-1:exon:11325;Parent=Msa0729710-mRNA-1 |
| chr5_1 | exon | 37581308 | 37581434 | 37581308 | ID=Msa0729710-mRNA-1:exon:11324;Parent=Msa0729710-mRNA-1 |
| chr5_1 | exon | 37581560 | 37581585 | 37581560 | ID=Msa0729710-mRNA-1:exon:11323;Parent=Msa0729710-mRNA-1 |
| chr5_1 | exon | 37581671 | 37581802 | 37581671 | ID=Msa0729710-mRNA-1:exon:11322;Parent=Msa0729710-mRNA-1 |
| chr5_1 | five_prime_UTR | 37581699 | 37581802 | 37581699 | ID=Msa0729710-mRNA-1:five_prime_utr;Parent=Msa0729710-mRNA-1 |
| chr5_1 | CDS | 37581671 | 37581698 | 37581671 | ID=Msa0729710-mRNA-1:cds;Parent=Msa0729710-mRNA-1 |
| chr5_1 | CDS | 37581560 | 37581585 | 37581560 | ID=Msa0729710-mRNA-1:cds;Parent=Msa0729710-mRNA-1 |
| chr5_1 | CDS | 37581308 | 37581434 | 37581308 | ID=Msa0729710-mRNA-1:cds;Parent=Msa0729710-mRNA-1 |
| chr5_1 | CDS | 37579500 | 37579570 | 37579500 | ID=Msa0729710-mRNA-1:cds;Parent=Msa0729710-mRNA-1 |
| chr5_1 | CDS | 37579202 | 37579390 | 37579202 | ID=Msa0729710-mRNA-1:cds;Parent=Msa0729710-mRNA-1 |
| chr5_1 | CDS | 37579014 | 37579112 | 37579014 | ID=Msa0729710-mRNA-1:cds;Parent=Msa0729710-mRNA-1 |
| chr5_1 | three_prime_UTR | 37578700 | 37579013 | 37578700 | ID=Msa0729710-mRNA-1:three_prime_utr;Parent=Msa0729710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
