AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0561430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0561430 MtrunA17_Chr4g0065831 100.000 130 0 0 1 130 1 130 8.31e-94 266
Msa0561430 MtrunA17_Chr4g0051921 99.231 130 1 0 1 130 1 130 2.23e-93 265
Msa0561430 MtrunA17_Chr1g0205971 99.231 130 1 0 1 130 1 130 2.23e-93 265
Msa0561430 MtrunA17_Chr8g0389371 52.000 125 60 0 6 130 5 129 1.43e-45 144
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0561430 AT5G59850.1 99.231 130 1 0 1 130 1 130 1.84e-93 265
Msa0561430 AT1G07770.2 99.231 130 1 0 1 130 1 130 1.84e-93 265
Msa0561430 AT1G07770.3 99.231 130 1 0 1 130 1 130 1.84e-93 265
Msa0561430 AT1G07770.1 99.231 130 1 0 1 130 1 130 1.84e-93 265
Msa0561430 AT3G46040.1 97.692 130 3 0 1 130 1 130 4.20e-92 262
Msa0561430 AT2G39590.1 91.538 130 11 0 1 130 1 130 4.49e-87 249
Msa0561430 AT4G29430.1 54.400 125 57 0 6 130 5 129 3.10e-47 149
Msa0561430 AT2G19720.1 53.600 125 58 0 6 130 5 129 3.24e-45 144

Find 45 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTGTCTCAACGCAGAATT+AGG 0.187245 4_1:-60952806 None:intergenic
GAAATTTGTAACAGCAAATA+TGG 0.239649 4_1:+60952943 Msa0561430:intron
AACTTCTCAAAATCTGAAAT+TGG 0.267676 4_1:-60954626 None:intergenic
GGATTAACGAAAGAATAATT+TGG 0.282896 4_1:-60954827 None:intergenic
TGGGTAAACTATTGTGCTCT+TGG 0.338767 4_1:+60954760 Msa0561430:three_prime_UTR
ATTACATGGATATTGTAATC+TGG 0.380843 4_1:+60954677 Msa0561430:three_prime_UTR
GGGTTACGGAAGCATCAAAA+TGG 0.395363 4_1:-60952785 None:intergenic
GACTACCTCTGCTGGTATCA+TGG 0.414748 4_1:+60954528 Msa0561430:CDS
TATTGTAATCTGGATTACTT+AGG 0.431592 4_1:+60954687 Msa0561430:three_prime_UTR
AATCCATTTGTCATGATGAA+TGG 0.432930 4_1:+60954845 Msa0561430:three_prime_UTR
ATTAGTCCTCGTTTCGATGT+TGG 0.460967 4_1:+60953278 Msa0561430:CDS
TTTCAGCTGACCTGTCTTGA+GGG 0.461353 4_1:-60953338 None:intergenic
GCACAAGCACACAATTTCTC+TGG 0.472256 4_1:+60952840 Msa0561430:five_prime_UTR
AGGCCATTCATCATGACAAA+TGG 0.479914 4_1:-60954848 None:intergenic
TACGTTGATGATCACAGGTC+TGG 0.486815 4_1:+60953209 Msa0561430:CDS
AATGTTGGTGGTAAAGTGTT+GGG 0.506719 4_1:+60954574 Msa0561430:CDS
ACTGTCTCAACGCAGAATTA+GGG 0.523684 4_1:-60952805 None:intergenic
AGGATGGCCTAATCATAACT+TGG 0.529437 4_1:-60953030 None:intergenic
GGAAGCGCCAAGTTATGATT+AGG 0.530843 4_1:+60953023 Msa0561430:CDS
ATTGTCTTGACTACCTCTGC+TGG 0.534592 4_1:+60954520 Msa0561430:CDS
GAATGTTGGTGGTAAAGTGT+TGG 0.537027 4_1:+60954573 Msa0561430:CDS
TCGAATACGTTGATGATCAC+AGG 0.543527 4_1:+60953204 Msa0561430:CDS
TCAACGCAGAATTAGGGTTA+CGG 0.543710 4_1:-60952799 None:intergenic
AGATTGAAGGATGGACCGCT+AGG 0.554548 4_1:+60953309 Msa0561430:CDS
TATGTTGCAGAACTCATACT+TGG 0.559822 4_1:-60954884 None:intergenic
AAAATTGTCGTGGAATTGAA+TGG 0.560179 4_1:+60953233 Msa0561430:CDS
TAGGCTTCTTCCCTCAAGAC+AGG 0.565892 4_1:+60953328 Msa0561430:CDS
GCTAGGAGAAAGAATGTTGG+TGG 0.567141 4_1:+60954562 Msa0561430:CDS
TTGTAACAGCAAATATGGTG+AGG 0.575157 4_1:+60952948 Msa0561430:intron
TGTAACAGCAAATATGGTGA+GGG 0.583163 4_1:+60952949 Msa0561430:intron
GAGGCTAGGAGAAAGAATGT+TGG 0.584494 4_1:+60954559 Msa0561430:CDS
TCATGGATCATGAAGAGGCT+AGG 0.585008 4_1:+60954545 Msa0561430:CDS
CAGGTCTGGCAAAATTGTCG+TGG 0.615939 4_1:+60953223 Msa0561430:CDS
ATGTACAATGCTGAGAAACG+TGG 0.619087 4_1:+60953001 Msa0561430:CDS
GTTGGTGTCAAAGAGATTGA+AGG 0.620427 4_1:+60953296 Msa0561430:CDS
CTTATCGTCATGCAAAAGCA+TGG 0.625917 4_1:+60953073 Msa0561430:CDS
AATGGAAGATTGAATAAGTG+TGG 0.630140 4_1:+60953251 Msa0561430:CDS
AGAGAAATTGTGTGCTTGTG+CGG 0.632079 4_1:-60952838 None:intergenic
TGGTATCATGGATCATGAAG+AGG 0.639197 4_1:+60954540 Msa0561430:CDS
ATGATCCATGATACCAGCAG+AGG 0.644078 4_1:-60954533 None:intergenic
GTGTCAAAGAGATTGAAGGA+TGG 0.661917 4_1:+60953300 Msa0561430:CDS
TGTACAATGCTGAGAAACGT+GGG 0.665211 4_1:+60953002 Msa0561430:CDS
TACTTGGTATGCTCTAGCAG+AGG 0.680139 4_1:-60954868 None:intergenic
TTGACACCAACATCGAAACG+AGG 0.688564 4_1:-60953284 None:intergenic
TCTTGAGGGAAGAAGCCTAG+CGG 0.735612 4_1:-60953324 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGAAAATATTAAAAGAT+GGG - chr4_1:60954174-60954193 None:intergenic 10.0%
!! TAAATGAAAATATTAAAAGA+TGG - chr4_1:60954175-60954194 None:intergenic 10.0%
!! AAATGAAAATATTAAAAGAT+GGG - chr4_1:60954174-60954193 None:intergenic 10.0%
!! TAAATGAAAATATTAAAAGA+TGG - chr4_1:60954175-60954194 None:intergenic 10.0%
!! AATTATAAAAAACAGCTTAT+AGG + chr4_1:60953589-60953608 Msa0561430:intron 15.0%
!! TTATAAGACAAACTTAATTA+GGG - chr4_1:60953751-60953770 None:intergenic 15.0%
!!! AATTTCTTATTATGCTTTTA+TGG + chr4_1:60953984-60954003 Msa0561430:intron 15.0%
!!! ATTTCTTATTATGCTTTTAT+GGG + chr4_1:60953985-60954004 Msa0561430:intron 15.0%
!!! CTAATTATGCTTTTATTTAT+TGG + chr4_1:60954083-60954102 Msa0561430:intron 15.0%
!! TAAACATTACAATTGAATAA+TGG - chr4_1:60954227-60954246 None:intergenic 15.0%
!! TACATTTAAAGAAAAACTAA+TGG + chr4_1:60954297-60954316 Msa0561430:intron 15.0%
!! AATTATAAAAAACAGCTTAT+AGG + chr4_1:60953589-60953608 Msa0561430:intron 15.0%
!! TTATAAGACAAACTTAATTA+GGG - chr4_1:60953751-60953770 None:intergenic 15.0%
!!! AATTTCTTATTATGCTTTTA+TGG + chr4_1:60953984-60954003 Msa0561430:intron 15.0%
!!! ATTTCTTATTATGCTTTTAT+GGG + chr4_1:60953985-60954004 Msa0561430:intron 15.0%
!!! CTAATTATGCTTTTATTTAT+TGG + chr4_1:60954083-60954102 Msa0561430:intron 15.0%
!! TAAACATTACAATTGAATAA+TGG - chr4_1:60954227-60954246 None:intergenic 15.0%
!! TACATTTAAAGAAAAACTAA+TGG + chr4_1:60954297-60954316 Msa0561430:intron 15.0%
!!! GATGATATTGTATACTTTTT+TGG + chr4_1:60953160-60953179 Msa0561430:intron 20.0%
!! CTTATAAGACAAACTTAATT+AGG - chr4_1:60953752-60953771 None:intergenic 20.0%
!! TAAATTCAAACCGTTATTAA+TGG + chr4_1:60953951-60953970 Msa0561430:intron 20.0%
!!! TTTCTTATTATGCTTTTATG+GGG + chr4_1:60953986-60954005 Msa0561430:intron 20.0%
!! AAAATATTAAAAGATGGGAT+GGG - chr4_1:60954169-60954188 None:intergenic 20.0%
!! AAAGAAAAACTAATGGTTAA+AGG + chr4_1:60954304-60954323 Msa0561430:intron 20.0%
!! AAGAAAAACTAATGGTTAAA+GGG + chr4_1:60954305-60954324 Msa0561430:intron 20.0%
!!! TTTTGTGCTAAATTGAATTT+TGG + chr4_1:60954740-60954759 Msa0561430:intron 20.0%
!!! TTTGTGCTAAATTGAATTTT+GGG + chr4_1:60954741-60954760 Msa0561430:intron 20.0%
!!! GATGATATTGTATACTTTTT+TGG + chr4_1:60953160-60953179 Msa0561430:intron 20.0%
!! CTTATAAGACAAACTTAATT+AGG - chr4_1:60953752-60953771 None:intergenic 20.0%
!! TAAATTCAAACCGTTATTAA+TGG + chr4_1:60953951-60953970 Msa0561430:intron 20.0%
!!! TTTCTTATTATGCTTTTATG+GGG + chr4_1:60953986-60954005 Msa0561430:intron 20.0%
!! AAAATATTAAAAGATGGGAT+GGG - chr4_1:60954169-60954188 None:intergenic 20.0%
!! AAAGAAAAACTAATGGTTAA+AGG + chr4_1:60954304-60954323 Msa0561430:intron 20.0%
!! AAGAAAAACTAATGGTTAAA+GGG + chr4_1:60954305-60954324 Msa0561430:intron 20.0%
!!! TTTTGTGCTAAATTGAATTT+TGG + chr4_1:60954740-60954759 Msa0561430:intron 20.0%
!!! TTTGTGCTAAATTGAATTTT+GGG + chr4_1:60954741-60954760 Msa0561430:intron 20.0%
! GAAATTTGTAACAGCAAATA+TGG + chr4_1:60952943-60952962 Msa0561430:intron 25.0%
!!! GAATTTGATAATCACTTTTG+AGG - chr4_1:60953053-60953072 None:intergenic 25.0%
! AAAACATTATCCCACAAAAT+GGG - chr4_1:60953130-60953149 None:intergenic 25.0%
! AAAAACATTATCCCACAAAA+TGG - chr4_1:60953131-60953150 None:intergenic 25.0%
!!! TTGTATACTTTTTTGGTTGT+AGG + chr4_1:60953167-60953186 Msa0561430:intron 25.0%
!!! TTTTTGGTTGTAGGATATAT+TGG + chr4_1:60953176-60953195 Msa0561430:intron 25.0%
! GAGATTTATAAGACAAAACT+GGG - chr4_1:60953366-60953385 None:intergenic 25.0%
! TCAAACTACTATGATCTTTA+TGG - chr4_1:60953399-60953418 None:intergenic 25.0%
! TCAAATAAGTCATTCAAAAC+AGG - chr4_1:60953470-60953489 None:intergenic 25.0%
! AAGTTTGTCTTATAAGTTCT+TGG + chr4_1:60953756-60953775 Msa0561430:intron 25.0%
! AGTTTGTCTTATAAGTTCTT+GGG + chr4_1:60953757-60953776 Msa0561430:intron 25.0%
! TCATGAATCATTTCTAATGA+CGG + chr4_1:60953922-60953941 Msa0561430:intron 25.0%
!! AAATAAAAGCATAATTAGCG+AGG - chr4_1:60954081-60954100 None:intergenic 25.0%
! GAAAATATTAAAAGATGGGA+TGG - chr4_1:60954170-60954189 None:intergenic 25.0%
! AATTGAATAATGGTTGGAAA+AGG - chr4_1:60954217-60954236 None:intergenic 25.0%
! CATTACAATTGAATAATGGT+TGG - chr4_1:60954223-60954242 None:intergenic 25.0%
! AGAAAAACTAATGGTTAAAG+GGG + chr4_1:60954306-60954325 Msa0561430:intron 25.0%
! GCAAAGTATATAATGATTGT+CGG - chr4_1:60954342-60954361 None:intergenic 25.0%
!! GTATCATATGATTTTTCTTC+TGG + chr4_1:60954457-60954476 Msa0561430:intron 25.0%
!! AACTTCTCAAAATCTGAAAT+TGG - chr4_1:60954629-60954648 None:intergenic 25.0%
!!! TTTTGAGAAGTTTTAGTGTT+TGG + chr4_1:60954637-60954656 Msa0561430:three_prime_UTR 25.0%
!!! TTTGAGAAGTTTTAGTGTTT+GGG + chr4_1:60954638-60954657 Msa0561430:three_prime_UTR 25.0%
!! CGAATTCAGTTTTTATTACA+TGG + chr4_1:60954663-60954682 Msa0561430:three_prime_UTR 25.0%
! ATTACATGGATATTGTAATC+TGG + chr4_1:60954677-60954696 Msa0561430:three_prime_UTR 25.0%
! TATTGTAATCTGGATTACTT+AGG + chr4_1:60954687-60954706 Msa0561430:three_prime_UTR 25.0%
!!! TAAGCTTTTAATTTGCACTT+TGG + chr4_1:60954714-60954733 Msa0561430:intron 25.0%
! GGATTAACGAAAGAATAATT+TGG - chr4_1:60954830-60954849 None:intergenic 25.0%
! GAAATTTGTAACAGCAAATA+TGG + chr4_1:60952943-60952962 Msa0561430:intron 25.0%
!!! GAATTTGATAATCACTTTTG+AGG - chr4_1:60953053-60953072 None:intergenic 25.0%
! AAAACATTATCCCACAAAAT+GGG - chr4_1:60953130-60953149 None:intergenic 25.0%
! AAAAACATTATCCCACAAAA+TGG - chr4_1:60953131-60953150 None:intergenic 25.0%
!!! TTGTATACTTTTTTGGTTGT+AGG + chr4_1:60953167-60953186 Msa0561430:intron 25.0%
!!! TTTTTGGTTGTAGGATATAT+TGG + chr4_1:60953176-60953195 Msa0561430:intron 25.0%
! GAGATTTATAAGACAAAACT+GGG - chr4_1:60953366-60953385 None:intergenic 25.0%
! TCAAACTACTATGATCTTTA+TGG - chr4_1:60953399-60953418 None:intergenic 25.0%
! TCAAATAAGTCATTCAAAAC+AGG - chr4_1:60953470-60953489 None:intergenic 25.0%
! AAGTTTGTCTTATAAGTTCT+TGG + chr4_1:60953756-60953775 Msa0561430:intron 25.0%
! AGTTTGTCTTATAAGTTCTT+GGG + chr4_1:60953757-60953776 Msa0561430:intron 25.0%
! TCATGAATCATTTCTAATGA+CGG + chr4_1:60953922-60953941 Msa0561430:intron 25.0%
!! AAATAAAAGCATAATTAGCG+AGG - chr4_1:60954081-60954100 None:intergenic 25.0%
! GAAAATATTAAAAGATGGGA+TGG - chr4_1:60954170-60954189 None:intergenic 25.0%
! AATTGAATAATGGTTGGAAA+AGG - chr4_1:60954217-60954236 None:intergenic 25.0%
! CATTACAATTGAATAATGGT+TGG - chr4_1:60954223-60954242 None:intergenic 25.0%
! AGAAAAACTAATGGTTAAAG+GGG + chr4_1:60954306-60954325 Msa0561430:intron 25.0%
! GCAAAGTATATAATGATTGT+CGG - chr4_1:60954342-60954361 None:intergenic 25.0%
!! GTATCATATGATTTTTCTTC+TGG + chr4_1:60954457-60954476 Msa0561430:intron 25.0%
!! AACTTCTCAAAATCTGAAAT+TGG - chr4_1:60954629-60954648 None:intergenic 25.0%
!!! TTTTGAGAAGTTTTAGTGTT+TGG + chr4_1:60954637-60954656 Msa0561430:three_prime_UTR 25.0%
!!! TTTGAGAAGTTTTAGTGTTT+GGG + chr4_1:60954638-60954657 Msa0561430:three_prime_UTR 25.0%
!! CGAATTCAGTTTTTATTACA+TGG + chr4_1:60954663-60954682 Msa0561430:three_prime_UTR 25.0%
! ATTACATGGATATTGTAATC+TGG + chr4_1:60954677-60954696 Msa0561430:three_prime_UTR 25.0%
! TATTGTAATCTGGATTACTT+AGG + chr4_1:60954687-60954706 Msa0561430:three_prime_UTR 25.0%
!!! TAAGCTTTTAATTTGCACTT+TGG + chr4_1:60954714-60954733 Msa0561430:intron 25.0%
! GGATTAACGAAAGAATAATT+TGG - chr4_1:60954830-60954849 None:intergenic 25.0%
!! TTGATAATCACTTTTGAGGA+TGG - chr4_1:60953049-60953068 None:intergenic 30.0%
AAACATTATCCCACAAAATG+GGG - chr4_1:60953129-60953148 None:intergenic 30.0%
! TGGGATAATGTTTTTCTATG+TGG + chr4_1:60953136-60953155 Msa0561430:intron 30.0%
AAAATTGTCGTGGAATTGAA+TGG + chr4_1:60953233-60953252 Msa0561430:CDS 30.0%
AATGGAAGATTGAATAAGTG+TGG + chr4_1:60953251-60953270 Msa0561430:CDS 30.0%
CGAGATTTATAAGACAAAAC+TGG - chr4_1:60953367-60953386 None:intergenic 30.0%
! TCCATTGACATAAGTTTTCT+AGG + chr4_1:60953495-60953514 Msa0561430:intron 30.0%
TCCTAGAAAACTTATGTCAA+TGG - chr4_1:60953499-60953518 None:intergenic 30.0%
GAACTTATGAAATCTGCTTA+TGG + chr4_1:60953528-60953547 Msa0561430:intron 30.0%
AAATAAGCCAATACAAGCTT+GGG - chr4_1:60953561-60953580 None:intergenic 30.0%
AAAATAAGCCAATACAAGCT+TGG - chr4_1:60953562-60953581 None:intergenic 30.0%
AAACTTAATTAGGGACTGTT+TGG - chr4_1:60953742-60953761 None:intergenic 30.0%
TTGACTTATGCTTCATACAT+TGG + chr4_1:60953826-60953845 Msa0561430:intron 30.0%
TCAAACCGTTATTAATGGTT+AGG + chr4_1:60953956-60953975 Msa0561430:intron 30.0%
ATACGCCTAACCATTAATAA+CGG - chr4_1:60953964-60953983 None:intergenic 30.0%
! TTATTATGCTTTTATGGGGT+GGG + chr4_1:60953990-60954009 Msa0561430:intron 30.0%
TAAAATCTGTATTCCCCATA+TGG - chr4_1:60954279-60954298 None:intergenic 30.0%
TATACTTTGCAGTAAATCGA+TGG + chr4_1:60954352-60954371 Msa0561430:intron 30.0%
ATTTGAGCAACCAATAGTTA+GGG - chr4_1:60954484-60954503 None:intergenic 30.0%
!!! AGTGTTGGGTTTTTTCTATT+AGG + chr4_1:60954588-60954607 Msa0561430:CDS 30.0%
!!! GTGTTGGGTTTTTTCTATTA+GGG + chr4_1:60954589-60954608 Msa0561430:CDS 30.0%
!!! ATTTTGAAACACAGAAGCTA+GGG - chr4_1:60954787-60954806 None:intergenic 30.0%
!!! AATTTTGAAACACAGAAGCT+AGG - chr4_1:60954788-60954807 None:intergenic 30.0%
AATCCATTTGTCATGATGAA+TGG + chr4_1:60954845-60954864 Msa0561430:three_prime_UTR 30.0%
!! TTGATAATCACTTTTGAGGA+TGG - chr4_1:60953049-60953068 None:intergenic 30.0%
AAACATTATCCCACAAAATG+GGG - chr4_1:60953129-60953148 None:intergenic 30.0%
! TGGGATAATGTTTTTCTATG+TGG + chr4_1:60953136-60953155 Msa0561430:intron 30.0%
AAAATTGTCGTGGAATTGAA+TGG + chr4_1:60953233-60953252 Msa0561430:CDS 30.0%
AATGGAAGATTGAATAAGTG+TGG + chr4_1:60953251-60953270 Msa0561430:CDS 30.0%
CGAGATTTATAAGACAAAAC+TGG - chr4_1:60953367-60953386 None:intergenic 30.0%
! TCCATTGACATAAGTTTTCT+AGG + chr4_1:60953495-60953514 Msa0561430:intron 30.0%
TCCTAGAAAACTTATGTCAA+TGG - chr4_1:60953499-60953518 None:intergenic 30.0%
GAACTTATGAAATCTGCTTA+TGG + chr4_1:60953528-60953547 Msa0561430:intron 30.0%
AAATAAGCCAATACAAGCTT+GGG - chr4_1:60953561-60953580 None:intergenic 30.0%
AAAATAAGCCAATACAAGCT+TGG - chr4_1:60953562-60953581 None:intergenic 30.0%
AAACTTAATTAGGGACTGTT+TGG - chr4_1:60953742-60953761 None:intergenic 30.0%
TTGACTTATGCTTCATACAT+TGG + chr4_1:60953826-60953845 Msa0561430:intron 30.0%
TCAAACCGTTATTAATGGTT+AGG + chr4_1:60953956-60953975 Msa0561430:intron 30.0%
ATACGCCTAACCATTAATAA+CGG - chr4_1:60953964-60953983 None:intergenic 30.0%
! TTATTATGCTTTTATGGGGT+GGG + chr4_1:60953990-60954009 Msa0561430:intron 30.0%
TAAAATCTGTATTCCCCATA+TGG - chr4_1:60954279-60954298 None:intergenic 30.0%
TATACTTTGCAGTAAATCGA+TGG + chr4_1:60954352-60954371 Msa0561430:intron 30.0%
ATTTGAGCAACCAATAGTTA+GGG - chr4_1:60954484-60954503 None:intergenic 30.0%
!!! AGTGTTGGGTTTTTTCTATT+AGG + chr4_1:60954588-60954607 Msa0561430:CDS 30.0%
!!! GTGTTGGGTTTTTTCTATTA+GGG + chr4_1:60954589-60954608 Msa0561430:CDS 30.0%
!!! ATTTTGAAACACAGAAGCTA+GGG - chr4_1:60954787-60954806 None:intergenic 30.0%
!!! AATTTTGAAACACAGAAGCT+AGG - chr4_1:60954788-60954807 None:intergenic 30.0%
AATCCATTTGTCATGATGAA+TGG + chr4_1:60954845-60954864 Msa0561430:three_prime_UTR 30.0%
CAATTTCTCTGGTAAGATCT+AGG + chr4_1:60952851-60952870 Msa0561430:intron 35.0%
AGATCTAGGTTTCTTCGATT+TGG + chr4_1:60952865-60952884 Msa0561430:intron 35.0%
!! TAGGTTTCTTCGATTTGGAT+TGG + chr4_1:60952870-60952889 Msa0561430:intron 35.0%
TTGTAACAGCAAATATGGTG+AGG + chr4_1:60952948-60952967 Msa0561430:intron 35.0%
TGTAACAGCAAATATGGTGA+GGG + chr4_1:60952949-60952968 Msa0561430:intron 35.0%
TACTGCACAATATGCAACTT+AGG + chr4_1:60953443-60953462 Msa0561430:intron 35.0%
ACTGCACAATATGCAACTTA+GGG + chr4_1:60953444-60953463 Msa0561430:intron 35.0%
CAATATTCCCAAGCTTGTAT+TGG + chr4_1:60953551-60953570 Msa0561430:intron 35.0%
TTAATTAGGGACTGTTTGGA+TGG - chr4_1:60953738-60953757 None:intergenic 35.0%
TGTCTTATAAGTTCTTGGGT+TGG + chr4_1:60953761-60953780 Msa0561430:intron 35.0%
! CTTATTATGCTTTTATGGGG+TGG + chr4_1:60953989-60954008 Msa0561430:intron 35.0%
TAGACGATATCTACAAGCAT+AGG - chr4_1:60954045-60954064 None:intergenic 35.0%
ACAAGCAACATAACATTCGA+TGG - chr4_1:60954435-60954454 None:intergenic 35.0%
GATTTGAGCAACCAATAGTT+AGG - chr4_1:60954485-60954504 None:intergenic 35.0%
TTGCTCAAATCATGCAGTTT+GGG + chr4_1:60954494-60954513 Msa0561430:intron 35.0%
!! AATGTTGGTGGTAAAGTGTT+GGG + chr4_1:60954574-60954593 Msa0561430:CDS 35.0%
CAATTTCTCTGGTAAGATCT+AGG + chr4_1:60952851-60952870 Msa0561430:intron 35.0%
AGATCTAGGTTTCTTCGATT+TGG + chr4_1:60952865-60952884 Msa0561430:intron 35.0%
!! TAGGTTTCTTCGATTTGGAT+TGG + chr4_1:60952870-60952889 Msa0561430:intron 35.0%
TTGTAACAGCAAATATGGTG+AGG + chr4_1:60952948-60952967 Msa0561430:intron 35.0%
TGTAACAGCAAATATGGTGA+GGG + chr4_1:60952949-60952968 Msa0561430:intron 35.0%
TACTGCACAATATGCAACTT+AGG + chr4_1:60953443-60953462 Msa0561430:intron 35.0%
ACTGCACAATATGCAACTTA+GGG + chr4_1:60953444-60953463 Msa0561430:intron 35.0%
CAATATTCCCAAGCTTGTAT+TGG + chr4_1:60953551-60953570 Msa0561430:intron 35.0%
TTAATTAGGGACTGTTTGGA+TGG - chr4_1:60953738-60953757 None:intergenic 35.0%
TGTCTTATAAGTTCTTGGGT+TGG + chr4_1:60953761-60953780 Msa0561430:intron 35.0%
! CTTATTATGCTTTTATGGGG+TGG + chr4_1:60953989-60954008 Msa0561430:intron 35.0%
TAGACGATATCTACAAGCAT+AGG - chr4_1:60954045-60954064 None:intergenic 35.0%
ACAAGCAACATAACATTCGA+TGG - chr4_1:60954435-60954454 None:intergenic 35.0%
GATTTGAGCAACCAATAGTT+AGG - chr4_1:60954485-60954504 None:intergenic 35.0%
TTGCTCAAATCATGCAGTTT+GGG + chr4_1:60954494-60954513 Msa0561430:intron 35.0%
!! AATGTTGGTGGTAAAGTGTT+GGG + chr4_1:60954574-60954593 Msa0561430:CDS 35.0%
TCAACGCAGAATTAGGGTTA+CGG - chr4_1:60952802-60952821 None:intergenic 40.0%
ACTGTCTCAACGCAGAATTA+GGG - chr4_1:60952808-60952827 None:intergenic 40.0%
AGAGAAATTGTGTGCTTGTG+CGG - chr4_1:60952841-60952860 None:intergenic 40.0%
ATGTACAATGCTGAGAAACG+TGG + chr4_1:60953001-60953020 Msa0561430:CDS 40.0%
TGTACAATGCTGAGAAACGT+GGG + chr4_1:60953002-60953021 Msa0561430:CDS 40.0%
AGGATGGCCTAATCATAACT+TGG - chr4_1:60953033-60953052 None:intergenic 40.0%
! CATGCTTTTGCATGACGATA+AGG - chr4_1:60953075-60953094 None:intergenic 40.0%
CTTATCGTCATGCAAAAGCA+TGG + chr4_1:60953073-60953092 Msa0561430:CDS 40.0%
! ATGTAGTTGACCCCATTTTG+TGG + chr4_1:60953116-60953135 Msa0561430:intron 40.0%
! TGTAGTTGACCCCATTTTGT+GGG + chr4_1:60953117-60953136 Msa0561430:intron 40.0%
!! TCGAATACGTTGATGATCAC+AGG + chr4_1:60953204-60953223 Msa0561430:CDS 40.0%
ATTAGTCCTCGTTTCGATGT+TGG + chr4_1:60953278-60953297 Msa0561430:CDS 40.0%
!! GTTGGTGTCAAAGAGATTGA+AGG + chr4_1:60953296-60953315 Msa0561430:CDS 40.0%
GTGTCAAAGAGATTGAAGGA+TGG + chr4_1:60953300-60953319 Msa0561430:CDS 40.0%
!! TTCTTGGGTTGGAATTGTAG+AGG + chr4_1:60953772-60953791 Msa0561430:intron 40.0%
!! TCTTGGGTTGGAATTGTAGA+GGG + chr4_1:60953773-60953792 Msa0561430:intron 40.0%
TAAGTCAAGACAAACACTGG+CGG - chr4_1:60953814-60953833 None:intergenic 40.0%
GCATAAGTCAAGACAAACAC+TGG - chr4_1:60953817-60953836 None:intergenic 40.0%
CGTAAGTGAGTGAGACATTT+GGG - chr4_1:60953874-60953893 None:intergenic 40.0%
CCAAATGTCTCACTCACTTA+CGG + chr4_1:60953872-60953891 Msa0561430:intron 40.0%
CAAATGTCTCACTCACTTAC+GGG + chr4_1:60953873-60953892 Msa0561430:intron 40.0%
GGTGGGAGTAGAATATTCAT+TGG + chr4_1:60954007-60954026 Msa0561430:intron 40.0%
TCTACAAGCATAGGTAGAGT+GGG - chr4_1:60954036-60954055 None:intergenic 40.0%
ATCTACAAGCATAGGTAGAG+TGG - chr4_1:60954037-60954056 None:intergenic 40.0%
AGACAGAAACCTGTTCCATA+TGG + chr4_1:60954261-60954280 Msa0561430:intron 40.0%
GACAGAAACCTGTTCCATAT+GGG + chr4_1:60954262-60954281 Msa0561430:intron 40.0%
ACAGAAACCTGTTCCATATG+GGG + chr4_1:60954263-60954282 Msa0561430:intron 40.0%
CTGAAGTTGCTATCATCATC+TGG + chr4_1:60954405-60954424 Msa0561430:intron 40.0%
TTCTTCTGGTCCCTAACTAT+TGG + chr4_1:60954471-60954490 Msa0561430:intron 40.0%
GTTGCTCAAATCATGCAGTT+TGG + chr4_1:60954493-60954512 Msa0561430:intron 40.0%
TGGTATCATGGATCATGAAG+AGG + chr4_1:60954540-60954559 Msa0561430:CDS 40.0%
!! GAATGTTGGTGGTAAAGTGT+TGG + chr4_1:60954573-60954592 Msa0561430:CDS 40.0%
TGGGTAAACTATTGTGCTCT+TGG + chr4_1:60954760-60954779 Msa0561430:three_prime_UTR 40.0%
AGGCCATTCATCATGACAAA+TGG - chr4_1:60954851-60954870 None:intergenic 40.0%
TCAACGCAGAATTAGGGTTA+CGG - chr4_1:60952802-60952821 None:intergenic 40.0%
ACTGTCTCAACGCAGAATTA+GGG - chr4_1:60952808-60952827 None:intergenic 40.0%
AGAGAAATTGTGTGCTTGTG+CGG - chr4_1:60952841-60952860 None:intergenic 40.0%
ATGTACAATGCTGAGAAACG+TGG + chr4_1:60953001-60953020 Msa0561430:CDS 40.0%
TGTACAATGCTGAGAAACGT+GGG + chr4_1:60953002-60953021 Msa0561430:CDS 40.0%
AGGATGGCCTAATCATAACT+TGG - chr4_1:60953033-60953052 None:intergenic 40.0%
! CATGCTTTTGCATGACGATA+AGG - chr4_1:60953075-60953094 None:intergenic 40.0%
CTTATCGTCATGCAAAAGCA+TGG + chr4_1:60953073-60953092 Msa0561430:CDS 40.0%
! ATGTAGTTGACCCCATTTTG+TGG + chr4_1:60953116-60953135 Msa0561430:intron 40.0%
! TGTAGTTGACCCCATTTTGT+GGG + chr4_1:60953117-60953136 Msa0561430:intron 40.0%
!! TCGAATACGTTGATGATCAC+AGG + chr4_1:60953204-60953223 Msa0561430:CDS 40.0%
ATTAGTCCTCGTTTCGATGT+TGG + chr4_1:60953278-60953297 Msa0561430:CDS 40.0%
!! GTTGGTGTCAAAGAGATTGA+AGG + chr4_1:60953296-60953315 Msa0561430:CDS 40.0%
GTGTCAAAGAGATTGAAGGA+TGG + chr4_1:60953300-60953319 Msa0561430:CDS 40.0%
!! TTCTTGGGTTGGAATTGTAG+AGG + chr4_1:60953772-60953791 Msa0561430:intron 40.0%
!! TCTTGGGTTGGAATTGTAGA+GGG + chr4_1:60953773-60953792 Msa0561430:intron 40.0%
TAAGTCAAGACAAACACTGG+CGG - chr4_1:60953814-60953833 None:intergenic 40.0%
GCATAAGTCAAGACAAACAC+TGG - chr4_1:60953817-60953836 None:intergenic 40.0%
CGTAAGTGAGTGAGACATTT+GGG - chr4_1:60953874-60953893 None:intergenic 40.0%
CCAAATGTCTCACTCACTTA+CGG + chr4_1:60953872-60953891 Msa0561430:intron 40.0%
CAAATGTCTCACTCACTTAC+GGG + chr4_1:60953873-60953892 Msa0561430:intron 40.0%
GGTGGGAGTAGAATATTCAT+TGG + chr4_1:60954007-60954026 Msa0561430:intron 40.0%
TCTACAAGCATAGGTAGAGT+GGG - chr4_1:60954036-60954055 None:intergenic 40.0%
ATCTACAAGCATAGGTAGAG+TGG - chr4_1:60954037-60954056 None:intergenic 40.0%
AGACAGAAACCTGTTCCATA+TGG + chr4_1:60954261-60954280 Msa0561430:intron 40.0%
GACAGAAACCTGTTCCATAT+GGG + chr4_1:60954262-60954281 Msa0561430:intron 40.0%
ACAGAAACCTGTTCCATATG+GGG + chr4_1:60954263-60954282 Msa0561430:intron 40.0%
CTGAAGTTGCTATCATCATC+TGG + chr4_1:60954405-60954424 Msa0561430:intron 40.0%
TTCTTCTGGTCCCTAACTAT+TGG + chr4_1:60954471-60954490 Msa0561430:intron 40.0%
GTTGCTCAAATCATGCAGTT+TGG + chr4_1:60954493-60954512 Msa0561430:intron 40.0%
TGGTATCATGGATCATGAAG+AGG + chr4_1:60954540-60954559 Msa0561430:CDS 40.0%
!! GAATGTTGGTGGTAAAGTGT+TGG + chr4_1:60954573-60954592 Msa0561430:CDS 40.0%
TGGGTAAACTATTGTGCTCT+TGG + chr4_1:60954760-60954779 Msa0561430:three_prime_UTR 40.0%
AGGCCATTCATCATGACAAA+TGG - chr4_1:60954851-60954870 None:intergenic 40.0%
!! GGGTTACGGAAGCATCAAAA+TGG - chr4_1:60952788-60952807 None:intergenic 45.0%
CACTGTCTCAACGCAGAATT+AGG - chr4_1:60952809-60952828 None:intergenic 45.0%
GCACAAGCACACAATTTCTC+TGG + chr4_1:60952840-60952859 Msa0561430:five_prime_UTR 45.0%
!! GGAAGCGCCAAGTTATGATT+AGG + chr4_1:60953023-60953042 Msa0561430:CDS 45.0%
!! TACGTTGATGATCACAGGTC+TGG + chr4_1:60953209-60953228 Msa0561430:CDS 45.0%
TTGACACCAACATCGAAACG+AGG - chr4_1:60953287-60953306 None:intergenic 45.0%
TTTCAGCTGACCTGTCTTGA+GGG - chr4_1:60953341-60953360 None:intergenic 45.0%
! TTTTCAGCTGACCTGTCTTG+AGG - chr4_1:60953342-60953361 None:intergenic 45.0%
!! CTTGGGTTGGAATTGTAGAG+GGG + chr4_1:60953774-60953793 Msa0561430:intron 45.0%
CCGTAAGTGAGTGAGACATT+TGG - chr4_1:60953875-60953894 None:intergenic 45.0%
CACTCACTTACGGGACTATT+TGG + chr4_1:60953882-60953901 Msa0561430:intron 45.0%
CTGTATTCCCCATATGGAAC+AGG - chr4_1:60954273-60954292 None:intergenic 45.0%
ATTGTCTTGACTACCTCTGC+TGG + chr4_1:60954520-60954539 Msa0561430:CDS 45.0%
ATGATCCATGATACCAGCAG+AGG - chr4_1:60954536-60954555 None:intergenic 45.0%
TCATGGATCATGAAGAGGCT+AGG + chr4_1:60954545-60954564 Msa0561430:CDS 45.0%
GAGGCTAGGAGAAAGAATGT+TGG + chr4_1:60954559-60954578 Msa0561430:CDS 45.0%
GCTAGGAGAAAGAATGTTGG+TGG + chr4_1:60954562-60954581 Msa0561430:CDS 45.0%
TACTTGGTATGCTCTAGCAG+AGG - chr4_1:60954871-60954890 None:intergenic 45.0%
!! GGGTTACGGAAGCATCAAAA+TGG - chr4_1:60952788-60952807 None:intergenic 45.0%
CACTGTCTCAACGCAGAATT+AGG - chr4_1:60952809-60952828 None:intergenic 45.0%
GCACAAGCACACAATTTCTC+TGG + chr4_1:60952840-60952859 Msa0561430:five_prime_UTR 45.0%
!! GGAAGCGCCAAGTTATGATT+AGG + chr4_1:60953023-60953042 Msa0561430:CDS 45.0%
!! TACGTTGATGATCACAGGTC+TGG + chr4_1:60953209-60953228 Msa0561430:CDS 45.0%
TTGACACCAACATCGAAACG+AGG - chr4_1:60953287-60953306 None:intergenic 45.0%
TTTCAGCTGACCTGTCTTGA+GGG - chr4_1:60953341-60953360 None:intergenic 45.0%
! TTTTCAGCTGACCTGTCTTG+AGG - chr4_1:60953342-60953361 None:intergenic 45.0%
!! CTTGGGTTGGAATTGTAGAG+GGG + chr4_1:60953774-60953793 Msa0561430:intron 45.0%
CCGTAAGTGAGTGAGACATT+TGG - chr4_1:60953875-60953894 None:intergenic 45.0%
CACTCACTTACGGGACTATT+TGG + chr4_1:60953882-60953901 Msa0561430:intron 45.0%
CTGTATTCCCCATATGGAAC+AGG - chr4_1:60954273-60954292 None:intergenic 45.0%
ATTGTCTTGACTACCTCTGC+TGG + chr4_1:60954520-60954539 Msa0561430:CDS 45.0%
ATGATCCATGATACCAGCAG+AGG - chr4_1:60954536-60954555 None:intergenic 45.0%
TCATGGATCATGAAGAGGCT+AGG + chr4_1:60954545-60954564 Msa0561430:CDS 45.0%
GAGGCTAGGAGAAAGAATGT+TGG + chr4_1:60954559-60954578 Msa0561430:CDS 45.0%
GCTAGGAGAAAGAATGTTGG+TGG + chr4_1:60954562-60954581 Msa0561430:CDS 45.0%
TACTTGGTATGCTCTAGCAG+AGG - chr4_1:60954871-60954890 None:intergenic 45.0%
CAGGTCTGGCAAAATTGTCG+TGG + chr4_1:60953223-60953242 Msa0561430:CDS 50.0%
AGATTGAAGGATGGACCGCT+AGG + chr4_1:60953309-60953328 Msa0561430:CDS 50.0%
TCTTGAGGGAAGAAGCCTAG+CGG - chr4_1:60953327-60953346 None:intergenic 50.0%
TAGGCTTCTTCCCTCAAGAC+AGG + chr4_1:60953328-60953347 Msa0561430:CDS 50.0%
!! CAAACACTGGCGGATTGTTC+TGG - chr4_1:60953804-60953823 None:intergenic 50.0%
ACAAGCATAGGTAGAGTGGG+AGG - chr4_1:60954033-60954052 None:intergenic 50.0%
GACTACCTCTGCTGGTATCA+TGG + chr4_1:60954528-60954547 Msa0561430:CDS 50.0%
CAGGTCTGGCAAAATTGTCG+TGG + chr4_1:60953223-60953242 Msa0561430:CDS 50.0%
AGATTGAAGGATGGACCGCT+AGG + chr4_1:60953309-60953328 Msa0561430:CDS 50.0%
TCTTGAGGGAAGAAGCCTAG+CGG - chr4_1:60953327-60953346 None:intergenic 50.0%
TAGGCTTCTTCCCTCAAGAC+AGG + chr4_1:60953328-60953347 Msa0561430:CDS 50.0%
!! CAAACACTGGCGGATTGTTC+TGG - chr4_1:60953804-60953823 None:intergenic 50.0%
ACAAGCATAGGTAGAGTGGG+AGG - chr4_1:60954033-60954052 None:intergenic 50.0%
GACTACCTCTGCTGGTATCA+TGG + chr4_1:60954528-60954547 Msa0561430:CDS 50.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 60952768 60954902 60952768 ID=Msa0561430;Name=Msa0561430
chr4_1 mRNA 60952768 60954902 60952768 ID=Msa0561430-mRNA-1;Parent=Msa0561430;Name=Msa0561430-mRNA-1;_AED=0.09;_eAED=0.09;_QI=99|1|1|1|0.5|0.2|5|264|130
chr4_1 exon 60952768 60952861 60952768 ID=Msa0561430-mRNA-1:exon:19052;Parent=Msa0561430-mRNA-1
chr4_1 exon 60952957 60953094 60952957 ID=Msa0561430-mRNA-1:exon:19053;Parent=Msa0561430-mRNA-1
chr4_1 exon 60953189 60953349 60953189 ID=Msa0561430-mRNA-1:exon:19054;Parent=Msa0561430-mRNA-1
chr4_1 exon 60954511 60954717 60954511 ID=Msa0561430-mRNA-1:exon:19055;Parent=Msa0561430-mRNA-1
chr4_1 exon 60954747 60954902 60954747 ID=Msa0561430-mRNA-1:exon:19056;Parent=Msa0561430-mRNA-1
chr4_1 five_prime_UTR 60952768 60952861 60952768 ID=Msa0561430-mRNA-1:five_prime_utr;Parent=Msa0561430-mRNA-1
chr4_1 five_prime_UTR 60952957 60952961 60952957 ID=Msa0561430-mRNA-1:five_prime_utr;Parent=Msa0561430-mRNA-1
chr4_1 CDS 60952962 60953094 60952962 ID=Msa0561430-mRNA-1:cds;Parent=Msa0561430-mRNA-1
chr4_1 CDS 60953189 60953349 60953189 ID=Msa0561430-mRNA-1:cds;Parent=Msa0561430-mRNA-1
chr4_1 CDS 60954511 60954609 60954511 ID=Msa0561430-mRNA-1:cds;Parent=Msa0561430-mRNA-1
chr4_1 three_prime_UTR 60954610 60954717 60954610 ID=Msa0561430-mRNA-1:three_prime_utr;Parent=Msa0561430-mRNA-1
chr4_1 three_prime_UTR 60954747 60954902 60954747 ID=Msa0561430-mRNA-1:three_prime_utr;Parent=Msa0561430-mRNA-1
Gene Sequence

>Msa0561430

ATGGTGAGGGTTAGTGTTTTGAACGATGCACTGAAGAGCATGTACAATGCTGAGAAACGTGGGAAGCGCCAAGTTATGATTAGGCCATCCTCAAAAGTGATTATCAAATTCCTTATCGTCATGCAAAAGCATGGATATATTGGAGAGTTCGAATACGTTGATGATCACAGGTCTGGCAAAATTGTCGTGGAATTGAATGGAAGATTGAATAAGTGTGGTGTTATTAGTCCTCGTTTCGATGTTGGTGTCAAAGAGATTGAAGGATGGACCGCTAGGCTTCTTCCCTCAAGACAGTTTGGGTATATTGTCTTGACTACCTCTGCTGGTATCATGGATCATGAAGAGGCTAGGAGAAAGAATGTTGGTGGTAAAGTGTTGGGTTTTTTCTATTAG

Protein sequence

>Msa0561430

MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY*