AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0177210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0177210 MtrunA17_Chr1g0200061 95.305 426 11 1 1 417 1 426 0.0 800
Msa0177210 MtrunA17_Chr1g0204031 78.431 51 11 0 165 215 432 482 5.24e-17 83.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0177210 AT5G50840.1 61.814 419 138 6 1 415 1 401 6.61e-152 436
Msa0177210 AT5G50840.2 61.190 420 140 6 1 415 1 402 2.58e-150 432

Find 97 sgRNAs with CRISPR-Local

Find 562 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCAGTGTGTTTGGTGTTT+TGG 0.222451 1_4:-64108332 Msa0177210:three_prime_UTR
TCTAATACCTTGTTTATATC+TGG 0.230764 1_4:-64108624 Msa0177210:three_prime_UTR
TCAGGAAGCTGGTTTGCTTC+TGG 0.243236 1_4:+64116323 None:intergenic
ATTGATTGTGGTCATTCTAA+TGG 0.258912 1_4:-64116188 Msa0177210:CDS
GTAAAGGATGCATGTGCTTC+AGG 0.259994 1_4:-64114943 Msa0177210:CDS
GTGGCATGTCTTGGTTTGTT+AGG 0.268926 1_4:-64108597 Msa0177210:three_prime_UTR
CAACCACCTCTTCTTCATAT+TGG 0.283834 1_4:+64108680 None:intergenic
CTGATGGGCTTCTCTTGTTC+AGG 0.299542 1_4:+64116233 None:intergenic
ACAATTCATGAAAAGGAAAA+AGG 0.300936 1_4:+64108463 None:intergenic
AGAACAAGTATCTCAGTTAT+TGG 0.302337 1_4:-64109797 Msa0177210:CDS
GAAGCACATGCATCCTTTAC+AGG 0.303336 1_4:+64114946 None:intergenic
TACTACCGCATTCACACTAT+TGG 0.319148 1_4:-64117023 Msa0177210:five_prime_UTR
CATTTATCTACATTGAAAAC+GGG 0.358022 1_4:-64108514 Msa0177210:three_prime_UTR
TCCTGAAGTTGATTCATTGC+CGG 0.363142 1_4:-64116306 Msa0177210:CDS
AAAATACCGAGTACATGTTT+TGG 0.368034 1_4:+64108360 None:intergenic
GGCTTCTCTTGTTCAGGAGT+TGG 0.369688 1_4:+64116239 None:intergenic
ATCGCTATGCCGGTCACTTC+AGG 0.373308 1_4:-64108759 Msa0177210:CDS
TGCTACAGGATGTGAGTATC+AGG 0.375897 1_4:-64110414 Msa0177210:intron
AAGCTCCCAAGCCAAGTTTC+CGG 0.377031 1_4:+64108395 None:intergenic
TGGCATGTCTTGGTTTGTTA+GGG 0.377791 1_4:-64108596 Msa0177210:three_prime_UTR
GTTGGAGTAGCAGGCGCAAC+AGG 0.381038 1_4:+64116257 None:intergenic
GGTTGCAGCTAAACAACCTT+TGG 0.383471 1_4:-64114983 Msa0177210:intron
AGAGAAATTCCAACAGTTCC+AGG 0.384564 1_4:-64109734 Msa0177210:intron
CCATTTATCTACATTGAAAA+CGG 0.391921 1_4:-64108515 Msa0177210:three_prime_UTR
TTCAAACCTTGATTGCATCT+TGG 0.400861 1_4:+64111709 None:intergenic
ACTATTATTACTCTTGTTCT+CGG 0.407706 1_4:+64108715 None:intergenic
CAGAATAAATGTCACCTTCT+GGG 0.408951 1_4:+64110003 None:intergenic
TCCGGCAATGAATCAACTTC+AGG 0.416327 1_4:+64116305 None:intergenic
TTGCCGGATGGGTTTGTTGA+GGG 0.434934 1_4:-64116290 Msa0177210:CDS
CGTTCTCCTTTAGCTGAGAA+AGG 0.449090 1_4:+64110368 None:intergenic
ACAGTTGAAGCAAAAGTCAT+TGG 0.459008 1_4:-64109899 Msa0177210:intron
AGTAGCAGGCGCAACAGGTT+CGG 0.461107 1_4:+64116262 None:intergenic
ACTCAAGTATCAACAAGTAT+TGG 0.464833 1_4:-64114303 Msa0177210:CDS
ATAAGCTTGAGTCACTATGC+AGG 0.470749 1_4:-64113356 Msa0177210:CDS
ATGTCATACAATTCATGAAA+AGG 0.477709 1_4:+64108456 None:intergenic
TTTACATCATTGCTTCTGGA+TGG 0.479292 1_4:+64116011 None:intergenic
TAAGTTCCAAGATGCAATCA+AGG 0.480936 1_4:-64111715 Msa0177210:intron
TCTGGACTAGTGGCATGTCT+TGG 0.486438 1_4:-64108606 Msa0177210:three_prime_UTR
TGTTCAGGAGTTGGAGTAGC+AGG 0.487921 1_4:+64116248 None:intergenic
CGTTTGCAGCTGACAACTGA+TGG 0.491667 1_4:-64109757 Msa0177210:CDS
CCTCTCAGACTGCTCGGTGG+AGG 0.491915 1_4:-64116078 Msa0177210:intron
TGATTGCCTTTCTCAGCTAA+AGG 0.494939 1_4:-64110374 Msa0177210:CDS
ATGAATCAACTTCAGGAAGC+TGG 0.495951 1_4:+64116312 None:intergenic
ATCCTCCTTGTAATCACTGA+TGG 0.503982 1_4:+64116217 None:intergenic
CGAGCGCTTGAAGAAACAGC+TGG 0.505935 1_4:-64108813 Msa0177210:CDS
TAATGGATTATCAAACGTGC+CGG 0.510915 1_4:-64116171 Msa0177210:CDS
GGTTGCAAACAACTTCTAGA+AGG 0.511261 1_4:-64108662 Msa0177210:three_prime_UTR
AATTACATTTATCTGAACTC+TGG 0.517076 1_4:+64115967 None:intergenic
ACATGAGGAAAGATCTGCTC+AGG 0.520293 1_4:-64109845 Msa0177210:CDS
ATCAATGAAGGAACTCAAGA+AGG 0.523923 1_4:-64109150 Msa0177210:CDS
GAGGATGGTTTCATTGATTG+TGG 0.524391 1_4:-64116200 Msa0177210:CDS
GACAAAAGCACTGCCTGTAA+AGG 0.524835 1_4:-64114959 Msa0177210:CDS
GCGTGCACTTAAATCAGAAA+AGG 0.525607 1_4:-64114342 Msa0177210:CDS
GAAGTTGATTCATTGCCGGA+TGG 0.529940 1_4:-64116302 Msa0177210:CDS
CTCTCAGACTGCTCGGTGGA+GGG 0.530354 1_4:-64116077 Msa0177210:intron
TAAAGGATGCATGTGCTTCA+GGG 0.531396 1_4:-64114942 Msa0177210:CDS
TCCTCTCTGCCTGAAGTGAC+CGG 0.533884 1_4:+64108750 None:intergenic
GTGCCCTCAACAAACCCATC+CGG 0.536588 1_4:+64116287 None:intergenic
TCAGATGGCAAAATCAATGA+AGG 0.543783 1_4:-64109162 Msa0177210:intron
ATTGCCGGATGGGTTTGTTG+AGG 0.550853 1_4:-64116291 Msa0177210:CDS
AAGTTGATTCATTGCCGGAT+GGG 0.555154 1_4:-64116301 Msa0177210:CDS
GTATTGGCTGAAAGAGATGC+AGG 0.555798 1_4:-64114287 Msa0177210:intron
GAAGCCCATCAGTGATTACA+AGG 0.557693 1_4:-64116222 Msa0177210:CDS
TCCTCCTTGTAATCACTGAT+GGG 0.561879 1_4:+64116218 None:intergenic
GCAAACAACTTCTAGAAGGA+AGG 0.562979 1_4:-64108658 Msa0177210:three_prime_UTR
ATCAGTGATTACAAGGAGGA+TGG 0.564958 1_4:-64116215 Msa0177210:CDS
CTTGTTTATATCTGGACTAG+TGG 0.570516 1_4:-64108616 Msa0177210:three_prime_UTR
GCGTCAAAATAAAATGCTGA+TGG 0.573163 1_4:-64113325 Msa0177210:intron
CAACTGAGGGGCAAAACTTG+AGG 0.580596 1_4:-64111752 Msa0177210:CDS
TGCAAACGTGTATCAACTGA+GGG 0.582847 1_4:-64111765 Msa0177210:CDS
TGAGGGGCAAAACTTGAGGA+TGG 0.583482 1_4:-64111748 Msa0177210:CDS
GCTTCTGGATGGTTGAGACT+CGG 0.585832 1_4:+64116022 None:intergenic
AATGGATTATCAAACGTGCC+GGG 0.588211 1_4:-64116170 Msa0177210:intron
TGACTCAAGCTTATCTCTGA+CGG 0.609729 1_4:+64113365 None:intergenic
AAAGAGCAACAACAAGGAGA+AGG 0.611330 1_4:-64115990 Msa0177210:CDS
AATCATGGGGAATACCTAGC+GGG 0.611569 1_4:+64116976 None:intergenic
GACTGTCCAAAACATGTACT+CGG 0.613166 1_4:-64108366 Msa0177210:three_prime_UTR
TGAGCAGCAATATGCCCAGA+AGG 0.617929 1_4:-64110017 Msa0177210:intron
TATCAGGCTCGAAGAACGAA+AGG 0.619128 1_4:-64110398 Msa0177210:CDS
TCGGCTCCAATATGAAGAAG+AGG 0.623702 1_4:-64108686 Msa0177210:exon
CACTAGTCCAGATATAAACA+AGG 0.636125 1_4:+64108617 None:intergenic
CAGTTCACATAGAAGAAACA+AGG 0.636191 1_4:-64117060 Msa0177210:five_prime_UTR
TAAGCTTGAGTCACTATGCA+GGG 0.636629 1_4:-64113355 Msa0177210:CDS
ACTTATAGAGTTAGTTGACG+AGG 0.647388 1_4:-64109084 Msa0177210:intron
ATTTAAACAAGAGATTGAGA+AGG 0.652438 1_4:-64109302 Msa0177210:intron
AAGATCCAATAGTGTGAATG+CGG 0.655159 1_4:+64117018 None:intergenic
GCCGGTCACTTCAGGCAGAG+AGG 0.655548 1_4:-64108751 Msa0177210:CDS
ATGCAAACGTGTATCAACTG+AGG 0.661308 1_4:-64111766 Msa0177210:CDS
GAGTAATAATAGTAACAACT+CGG 0.668165 1_4:-64108705 Msa0177210:CDS
GATGTAAAAGAGCAACAACA+AGG 0.680608 1_4:-64115996 Msa0177210:CDS
GGATGCATGTGCTTCAGGGA+TGG 0.680755 1_4:-64114938 Msa0177210:CDS
TCACCTCTCAGACTGCTCGG+TGG 0.683389 1_4:-64116081 Msa0177210:intron
GCTCCAATATGAAGAAGAGG+TGG 0.684488 1_4:-64108683 Msa0177210:exon
TCGGAAACAGAACTAGCTAG+AGG 0.687895 1_4:+64116041 None:intergenic
ATTTATCTACATTGAAAACG+GGG 0.708886 1_4:-64108513 Msa0177210:three_prime_UTR
GCCCATCAGTGATTACAAGG+AGG 0.736966 1_4:-64116219 Msa0177210:CDS
GCAAACGTGTATCAACTGAG+GGG 0.772676 1_4:-64111764 Msa0177210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG - chr1_4:64110473-64110492 Msa0177210:intron 0.0%
!!! TTATTTTATTTTTTAAAGTG+AGG - chr1_4:64108879-64108898 Msa0177210:intron 10.0%
!! ATATATATATATATATGGTT+CGG - chr1_4:64110494-64110513 Msa0177210:intron 10.0%
!!! TTTTTTTTCTTGTATTAATT+TGG - chr1_4:64111766-64111785 Msa0177210:CDS 10.0%
!!! TTTTTTTCTTGTATTAATTT+GGG - chr1_4:64111767-64111786 Msa0177210:CDS 10.0%
!! AAGAGAATTTAAATAATTAA+TGG + chr1_4:64112656-64112675 None:intergenic 10.0%
!! TTGAAAAAAATGTAATATTT+AGG + chr1_4:64116053-64116072 None:intergenic 10.0%
!! ATATATTATAGAATAGTAAA+TGG + chr1_4:64116289-64116308 None:intergenic 10.0%
!! CTATTCTATAATATATAAAT+AGG - chr1_4:64116293-64116312 Msa0177210:CDS 10.0%
!!! TTGATTCATTTTTAAAAATA+TGG + chr1_4:64116448-64116467 None:intergenic 10.0%
!!! GATAACTTTAAAAGAAAAAA+AGG + chr1_4:64108383-64108402 None:intergenic 15.0%
!! ATAATCTACTTAATAAAGAA+CGG + chr1_4:64109546-64109565 None:intergenic 15.0%
!! TAATAATAAAAAAAAGACTC+AGG - chr1_4:64110668-64110687 Msa0177210:intron 15.0%
!! AATAATAAAAAAAAGACTCA+GGG - chr1_4:64110669-64110688 Msa0177210:intron 15.0%
!! AAAAATTAGTTACAGATTAA+GGG + chr1_4:64111894-64111913 None:intergenic 15.0%
!! AAAATTAAACACATATACTT+TGG + chr1_4:64112520-64112539 None:intergenic 15.0%
!!! AAAAACTTAAAAACAGATTT+TGG - chr1_4:64113888-64113907 Msa0177210:intron 15.0%
!!! TTAAAAATTTGCTGAAAAAT+GGG + chr1_4:64114109-64114128 None:intergenic 15.0%
!!! TTTAAAAATTTGCTGAAAAA+TGG + chr1_4:64114110-64114129 None:intergenic 15.0%
!!! TTGTTATTGTATATATTGTT+GGG - chr1_4:64114274-64114293 Msa0177210:intron 15.0%
!!! GATGAATTATTTTCTTTTAT+AGG - chr1_4:64114296-64114315 Msa0177210:CDS 15.0%
!!! TTTAGATTTTCTTTGTATAT+AGG + chr1_4:64114459-64114478 None:intergenic 15.0%
!! ATATACAAAGAAAATCTAAA+TGG - chr1_4:64114459-64114478 Msa0177210:intron 15.0%
!! TATTACTATTCTTTACAAAT+CGG + chr1_4:64114797-64114816 None:intergenic 15.0%
!! AATATTATACCAAGTATTAT+CGG + chr1_4:64115050-64115069 None:intergenic 15.0%
!! AAAAAGGAAAAAAAGAAAGA+GGG + chr1_4:64108367-64108386 None:intergenic 20.0%
!! AAAAAAGGAAAAAAAGAAAG+AGG + chr1_4:64108368-64108387 None:intergenic 20.0%
!!! TTCTTCCATTTTTAAATTGT+TGG - chr1_4:64108477-64108496 Msa0177210:three_prime_UTR 20.0%
!! TGATACCAACAATTTAAAAA+TGG + chr1_4:64108485-64108504 None:intergenic 20.0%
!! AATGCAAGAGATTAATTAAT+TGG + chr1_4:64108533-64108552 None:intergenic 20.0%
!!! CATTTTTATTTTGTGTGTTT+AGG - chr1_4:64108549-64108568 Msa0177210:three_prime_UTR 20.0%
!!! ATGAAATTTGATAGTAGTTT+AGG - chr1_4:64108713-64108732 Msa0177210:CDS 20.0%
!!! TTTTAAAGTGAGGATTAAAT+TGG - chr1_4:64108889-64108908 Msa0177210:intron 20.0%
!!! ATAAGAGATTTTTGAAATGT+AGG - chr1_4:64108956-64108975 Msa0177210:intron 20.0%
!!! CTTAAAAGCAAGTTTTAATT+TGG - chr1_4:64109448-64109467 Msa0177210:intron 20.0%
!! AATAACATGAGTATGAAAAT+GGG + chr1_4:64109672-64109691 None:intergenic 20.0%
!! AAATAACATGAGTATGAAAA+TGG + chr1_4:64109673-64109692 None:intergenic 20.0%
!! ATCTTATATGATTGAACAAT+TGG - chr1_4:64110022-64110041 Msa0177210:CDS 20.0%
!! CATTTGAAAAAAATAGAGAA+GGG + chr1_4:64110127-64110146 None:intergenic 20.0%
!! ACATTTGAAAAAAATAGAGA+AGG + chr1_4:64110128-64110147 None:intergenic 20.0%
!! GCATAAATTAATATAACTGA+CGG - chr1_4:64110224-64110243 Msa0177210:intron 20.0%
!!! AAAATAGTCTTATCAAATAG+AGG + chr1_4:64110569-64110588 None:intergenic 20.0%
!! ATAATAAAAAAAAGACTCAG+GGG - chr1_4:64110670-64110689 Msa0177210:intron 20.0%
!! ATAGCAATACATTTAAAAAG+AGG + chr1_4:64111360-64111379 None:intergenic 20.0%
!! ACATAGTGTAATCAAATTAT+TGG - chr1_4:64111512-64111531 Msa0177210:intron 20.0%
!! CATAGTGTAATCAAATTATT+GGG - chr1_4:64111513-64111532 Msa0177210:intron 20.0%
!! CAAAAATTAGTTACAGATTA+AGG + chr1_4:64111895-64111914 None:intergenic 20.0%
!! TATAAACTAAACATGAGAAA+TGG + chr1_4:64112349-64112368 None:intergenic 20.0%
!! AAACCATCTTAATTATATCT+CGG - chr1_4:64112727-64112746 Msa0177210:intron 20.0%
!!! CATTTCATTTTTGTTTCAAA+AGG + chr1_4:64112806-64112825 None:intergenic 20.0%
!!! ATAAACTTTTAGCAATTTCT+AGG - chr1_4:64113019-64113038 Msa0177210:intron 20.0%
!!! TTGATTTGTTATGAAAGTTT+TGG - chr1_4:64113145-64113164 Msa0177210:intron 20.0%
!! AAAAATTACAAAAGAGTAAG+TGG + chr1_4:64113868-64113887 None:intergenic 20.0%
!!! TTTCAGCAAATTTTTAAATC+TGG - chr1_4:64114112-64114131 Msa0177210:intron 20.0%
!!! GTTGTTATTGTATATATTGT+TGG - chr1_4:64114273-64114292 Msa0177210:intron 20.0%
!! ATTACTATTCTTTACAAATC+GGG + chr1_4:64114796-64114815 None:intergenic 20.0%
!! TAATTGAAAAATGATTCCAT+GGG + chr1_4:64114834-64114853 None:intergenic 20.0%
!! ATAATTGAAAAATGATTCCA+TGG + chr1_4:64114835-64114854 None:intergenic 20.0%
!!! TCTTCTTAAAAAACTTTTCA+GGG + chr1_4:64114983-64115002 None:intergenic 20.0%
!!! CTCTTTTTAAAAGGAAAAAA+GGG - chr1_4:64115158-64115177 Msa0177210:intron 20.0%
!!! AAATCATGTCGAATTATTTT+AGG + chr1_4:64115225-64115244 None:intergenic 20.0%
!!! TATTTATTAACTTTTGAGAC+TGG - chr1_4:64115365-64115384 Msa0177210:intron 20.0%
!! ATTAAAAATTAAGCAACATG+AGG - chr1_4:64115455-64115474 Msa0177210:intron 20.0%
!! TAGCACATAATATAATAAAG+TGG + chr1_4:64115647-64115666 None:intergenic 20.0%
!!! ACCATTGATTTGTTTAATAA+CGG - chr1_4:64115764-64115783 Msa0177210:intron 20.0%
!! ATATAAATAGGGAGATAAAT+TGG - chr1_4:64116305-64116324 Msa0177210:CDS 20.0%
!!! AATTACCATATTTTGATAGA+CGG + chr1_4:64116385-64116404 None:intergenic 20.0%
! TAACAACAAAATTACAGCTA+CGG + chr1_4:64108621-64108640 None:intergenic 25.0%
!!! AGCTGTAATTTTGTTGTTAT+TGG - chr1_4:64108622-64108641 Msa0177210:three_prime_UTR 25.0%
! CTACTATCAAATTTCATCAA+GGG + chr1_4:64108710-64108729 None:intergenic 25.0%
! ACTACTATCAAATTTCATCA+AGG + chr1_4:64108711-64108730 None:intergenic 25.0%
!!! TTTTTTGTCAAATAACCTAG+TGG + chr1_4:64108827-64108846 None:intergenic 25.0%
! TGACAAAAAAAAATTGTGAC+TGG - chr1_4:64108837-64108856 Msa0177210:intron 25.0%
!!! TAAATTGGAGTTTTTTCTGA+AGG - chr1_4:64108904-64108923 Msa0177210:intron 25.0%
! AATTACATTTATCTGAACTC+TGG + chr1_4:64109351-64109370 None:intergenic 25.0%
! TAAATACGAAGTCTACAAAA+GGG + chr1_4:64109391-64109410 None:intergenic 25.0%
! GAAAGAAGAAAAGTTTACAT+TGG + chr1_4:64109595-64109614 None:intergenic 25.0%
! CTATAAACAAAAGAGTTTCA+TGG + chr1_4:64109773-64109792 None:intergenic 25.0%
! TCTCCATATTGTATTGAATT+AGG - chr1_4:64109810-64109829 Msa0177210:CDS 25.0%
! ATGCCTAATTCAATACAATA+TGG + chr1_4:64109816-64109835 None:intergenic 25.0%
! ATATACATAGTTAGACAAGA+TGG + chr1_4:64109881-64109900 None:intergenic 25.0%
!!! CTCTATTTTTTTCAAATGTG+TGG - chr1_4:64110129-64110148 Msa0177210:intron 25.0%
! TATCTCTTTAGTATCTGATA+AGG - chr1_4:64110287-64110306 Msa0177210:intron 25.0%
! AATAAAATGCGATAGTTGAT+GGG + chr1_4:64110605-64110624 None:intergenic 25.0%
! AAATAAAATGCGATAGTTGA+TGG + chr1_4:64110606-64110625 None:intergenic 25.0%
! TAATAAAAAAAAGACTCAGG+GGG - chr1_4:64110671-64110690 Msa0177210:intron 25.0%
! TTGACAAAATAAAGATTCAG+AGG - chr1_4:64110744-64110763 Msa0177210:intron 25.0%
! TGACAAAATAAAGATTCAGA+GGG - chr1_4:64110745-64110764 Msa0177210:intron 25.0%
!!! ATGTGTTTTGATTTTTTTGC+TGG - chr1_4:64111079-64111098 Msa0177210:intron 25.0%
! GTGAACTTTCTTATTATGAT+AGG - chr1_4:64111111-64111130 Msa0177210:intron 25.0%
! CATATTAACTGTTGTTATGT+TGG - chr1_4:64111333-64111352 Msa0177210:intron 25.0%
! ATTAGTTCATTCTACAGAAA+CGG - chr1_4:64111485-64111504 Msa0177210:intron 25.0%
! GTAATTTGATACTAGGATAT+TGG - chr1_4:64111555-64111574 Msa0177210:intron 25.0%
! AAAATTGTACCATGTTCAAA+TGG + chr1_4:64111749-64111768 None:intergenic 25.0%
!! TTCTTGTATTAATTTGGGTT+AGG - chr1_4:64111772-64111791 Msa0177210:CDS 25.0%
! TATTAGATAATCAGTTTCAG+AGG + chr1_4:64112037-64112056 None:intergenic 25.0%
! TGTTGAATGCCTAAAAAATT+AGG - chr1_4:64112079-64112098 Msa0177210:intron 25.0%
! TCACATAAACACATAAACTA+AGG - chr1_4:64112399-64112418 Msa0177210:intron 25.0%
! CACATAAACACATAAACTAA+GGG - chr1_4:64112400-64112419 Msa0177210:intron 25.0%
! TTTAATGAAATTGCTTATCG+TGG + chr1_4:64112704-64112723 None:intergenic 25.0%
! AACCATCTTAATTATATCTC+GGG - chr1_4:64112728-64112747 Msa0177210:intron 25.0%
!!! TCATTTTTGTTTCAAAAGGA+TGG + chr1_4:64112802-64112821 None:intergenic 25.0%
!!! TGTATGTAATTTTGTTTAGC+TGG - chr1_4:64113202-64113221 Msa0177210:intron 25.0%
! AATAAGAAAAGGAACTCATT+AGG + chr1_4:64113409-64113428 None:intergenic 25.0%
! CACATTCATGTAATAAGAAA+AGG + chr1_4:64113420-64113439 None:intergenic 25.0%
! ACTCTGTTAATGAAAAAACT+AGG - chr1_4:64113499-64113518 Msa0177210:intron 25.0%
!! ATTCATGTTCCATTATTTTC+AGG - chr1_4:64113522-64113541 Msa0177210:intron 25.0%
!! TTTTGAACAAAGTGTACATT+TGG - chr1_4:64113658-64113677 Msa0177210:intron 25.0%
!!! CTTAAAAACAGATTTTGGAA+AGG - chr1_4:64113893-64113912 Msa0177210:intron 25.0%
! ATTCTATGCTCAAAGATTAA+GGG + chr1_4:64113931-64113950 None:intergenic 25.0%
! TATTCTATGCTCAAAGATTA+AGG + chr1_4:64113932-64113951 None:intergenic 25.0%
! CCAAAGAAACATTAATTTCA+AGG + chr1_4:64113967-64113986 None:intergenic 25.0%
! CCTTGAAATTAATGTTTCTT+TGG - chr1_4:64113964-64113983 Msa0177210:intron 25.0%
! AATCAATCTAAATCAAAGAC+AGG - chr1_4:64114036-64114055 Msa0177210:intron 25.0%
! ATCAATCTAAATCAAAGACA+GGG - chr1_4:64114037-64114056 Msa0177210:intron 25.0%
! ATTAGATTCCAATATGTTCA+AGG - chr1_4:64114144-64114163 Msa0177210:intron 25.0%
! CTGTTAGGATATAGAATAAA+CGG - chr1_4:64114557-64114576 Msa0177210:intron 25.0%
! TGTTAGGATATAGAATAAAC+GGG - chr1_4:64114558-64114577 Msa0177210:intron 25.0%
! GGAATATTTGTATAGATAAG+AGG - chr1_4:64114604-64114623 Msa0177210:intron 25.0%
!!! ATAGTAATATCTTTTCTAGC+TGG - chr1_4:64114808-64114827 Msa0177210:intron 25.0%
!! GTCTTCTTAAAAAACTTTTC+AGG + chr1_4:64114984-64115003 None:intergenic 25.0%
!!! TTTTAAAAAGAGCCATTGTA+TGG + chr1_4:64115150-64115169 None:intergenic 25.0%
!! ATACAATGGCTCTTTTTAAA+AGG - chr1_4:64115149-64115168 Msa0177210:intron 25.0%
!!! GCTCTTTTTAAAAGGAAAAA+AGG - chr1_4:64115157-64115176 Msa0177210:intron 25.0%
! ATTCGACATGATTTCAATAT+AGG - chr1_4:64115231-64115250 Msa0177210:intron 25.0%
! ACCGTTATTAAACAAATCAA+TGG + chr1_4:64115768-64115787 None:intergenic 25.0%
!!! TACTTATCCCTATTTTAGAA+TGG - chr1_4:64115836-64115855 Msa0177210:intron 25.0%
! ATTTAAACAAGAGATTGAGA+AGG - chr1_4:64116013-64116032 Msa0177210:CDS 25.0%
!!! ATTTTTGCTTTTCATCCTTA+AGG - chr1_4:64116402-64116421 Msa0177210:intron 25.0%
! ACTATTATTACTCTTGTTCT+CGG + chr1_4:64116603-64116622 None:intergenic 25.0%
! GAGTAATAATAGTAACAACT+CGG - chr1_4:64116610-64116629 Msa0177210:intron 25.0%
!! TCTAATACCTTGTTTATATC+TGG - chr1_4:64116691-64116710 Msa0177210:intron 25.0%
! CCATTTATCTACATTGAAAA+CGG - chr1_4:64116800-64116819 Msa0177210:intron 25.0%
! CATTTATCTACATTGAAAAC+GGG - chr1_4:64116801-64116820 Msa0177210:intron 25.0%
! ATTTATCTACATTGAAAACG+GGG - chr1_4:64116802-64116821 Msa0177210:intron 25.0%
! ACAATTCATGAAAAGGAAAA+AGG + chr1_4:64116855-64116874 None:intergenic 25.0%
! ATGTCATACAATTCATGAAA+AGG + chr1_4:64116862-64116881 None:intergenic 25.0%
AAAGAAAGAGGGATAATCAT+GGG + chr1_4:64108356-64108375 None:intergenic 30.0%
AAAAGAAAGAGGGATAATCA+TGG + chr1_4:64108357-64108376 None:intergenic 30.0%
CAATAACATCTCTCTACAAT+GGG + chr1_4:64108598-64108617 None:intergenic 30.0%
TCTGAAGGAAAGGATTAAAT+TGG - chr1_4:64108919-64108938 Msa0177210:intron 30.0%
ATTGATTGTGGTCATTCTAA+TGG - chr1_4:64109127-64109146 Msa0177210:CDS 30.0%
AAATACGAAGTCTACAAAAG+GGG + chr1_4:64109390-64109409 None:intergenic 30.0%
CTAAATACGAAGTCTACAAA+AGG + chr1_4:64109392-64109411 None:intergenic 30.0%
TTGTCTTGATCATTTGCTTA+TGG - chr1_4:64109490-64109509 Msa0177210:intron 30.0%
TGTCTTGATCATTTGCTTAT+GGG - chr1_4:64109491-64109510 Msa0177210:intron 30.0%
TTTACATTGGTACAACACAT+TGG + chr1_4:64109582-64109601 None:intergenic 30.0%
CATGAGTAGGAAAATGAATA+AGG + chr1_4:64109617-64109636 None:intergenic 30.0%
! CTTATTCATTTTCCTACTCA+TGG - chr1_4:64109615-64109634 Msa0177210:intron 30.0%
!!! TCCTACTCATGGAATTTTTT+AGG - chr1_4:64109626-64109645 Msa0177210:intron 30.0%
ACCTAAAAAATTCCATGAGT+AGG + chr1_4:64109630-64109649 None:intergenic 30.0%
ATATGGAGAATGTTTGAACT+AGG + chr1_4:64109799-64109818 None:intergenic 30.0%
ATTTGAGGGTCATAACAAAA+GGG + chr1_4:64109839-64109858 None:intergenic 30.0%
AATTTGAGGGTCATAACAAA+AGG + chr1_4:64109840-64109859 None:intergenic 30.0%
GGTTTGAAGAACAAATTTGT+TGG - chr1_4:64109960-64109979 Msa0177210:intron 30.0%
!! GAAGAACAAATTTGTTGGAA+AGG - chr1_4:64109965-64109984 Msa0177210:intron 30.0%
TATGATTGAACAATTGGAGA+CGG - chr1_4:64110028-64110047 Msa0177210:CDS 30.0%
GGAAGGTTGTAAAAGTAAAA+TGG - chr1_4:64110068-64110087 Msa0177210:intron 30.0%
CTGTTAACAGTCATAATTGA+CGG - chr1_4:64110159-64110178 Msa0177210:intron 30.0%
TCTGTTACCATTGTTAATTG+TGG - chr1_4:64110311-64110330 Msa0177210:intron 30.0%
TTGATTAGGTTCTATTGAGT+AGG - chr1_4:64110695-64110714 Msa0177210:intron 30.0%
TGATTAGGTTCTATTGAGTA+GGG - chr1_4:64110696-64110715 Msa0177210:intron 30.0%
TATTGAGTAGGGAATTCATT+CGG - chr1_4:64110707-64110726 Msa0177210:intron 30.0%
AAATAAAGATTCAGAGGGTT+AGG - chr1_4:64110750-64110769 Msa0177210:intron 30.0%
ACAAAATAATGACTCGTAGA+GGG - chr1_4:64110780-64110799 Msa0177210:intron 30.0%
!!! TCTTTTTTGCATTTCTCTGT+TGG - chr1_4:64110831-64110850 Msa0177210:intron 30.0%
!!! AGTTTTTTTCCCCTTTCTTT+TGG - chr1_4:64110862-64110881 Msa0177210:intron 30.0%
! GTCAAACTTCTAATTTTCTC+AGG - chr1_4:64110922-64110941 Msa0177210:intron 30.0%
! TTCTAATTTTCTCAGGAAAC+TGG - chr1_4:64110929-64110948 Msa0177210:intron 30.0%
! TCTAATTTTCTCAGGAAACT+GGG - chr1_4:64110930-64110949 Msa0177210:intron 30.0%
ACTCAAGTATCAACAAGTAT+TGG - chr1_4:64111012-64111031 Msa0177210:intron 30.0%
GAAAAATCAAGAGAAAGTGA+AGG - chr1_4:64111133-64111152 Msa0177210:intron 30.0%
TACTGTACACTGATATTTAG+AGG - chr1_4:64111232-64111251 Msa0177210:intron 30.0%
! GTAATAGAAACTGGTTTCTA+TGG + chr1_4:64111431-64111450 None:intergenic 30.0%
GACTGTAATGTAATAGAAAC+TGG + chr1_4:64111440-64111459 None:intergenic 30.0%
TACCAGTGTAATTTGATACT+AGG - chr1_4:64111548-64111567 Msa0177210:intron 30.0%
ATCCTAGTATCAAATTACAC+TGG + chr1_4:64111553-64111572 None:intergenic 30.0%
ATTTGATACTAGGATATTGG+AGG - chr1_4:64111558-64111577 Msa0177210:intron 30.0%
TTTGATACTAGGATATTGGA+GGG - chr1_4:64111559-64111578 Msa0177210:intron 30.0%
ATTCAAGTGCTCAATTACAA+AGG + chr1_4:64111616-64111635 None:intergenic 30.0%
TTGCATCTTCTTAACTGTAA+TGG - chr1_4:64111635-64111654 Msa0177210:intron 30.0%
TGCATCTTCTTAACTGTAAT+GGG - chr1_4:64111636-64111655 Msa0177210:intron 30.0%
AGAGAAGCAATACATTTAGA+AGG + chr1_4:64111684-64111703 None:intergenic 30.0%
TCTAAATGACCATTTGAACA+TGG - chr1_4:64111737-64111756 Msa0177210:CDS 30.0%
! TGTATTAATTTGGGTTAGGT+TGG - chr1_4:64111776-64111795 Msa0177210:intron 30.0%
!!! TGTTGTTTTGAGAAACACTT+AGG - chr1_4:64111816-64111835 Msa0177210:intron 30.0%
!!! GTTGTTTTGAGAAACACTTA+GGG - chr1_4:64111817-64111836 Msa0177210:intron 30.0%
!!! TTGTTTTGAGAAACACTTAG+GGG - chr1_4:64111818-64111837 Msa0177210:intron 30.0%
TCTGACTACAAAACCAAATT+TGG - chr1_4:64112113-64112132 Msa0177210:intron 30.0%
CTGACTACAAAACCAAATTT+GGG - chr1_4:64112114-64112133 Msa0177210:intron 30.0%
TGACTACAAAACCAAATTTG+GGG - chr1_4:64112115-64112134 Msa0177210:intron 30.0%
CAAACAAATTCAGATTTCCA+TGG + chr1_4:64112204-64112223 None:intergenic 30.0%
GCTAATTGAAAATTAGTCCT+TGG - chr1_4:64112232-64112251 Msa0177210:intron 30.0%
AATTGAAAATTAGTCCTTGG+TGG - chr1_4:64112235-64112254 Msa0177210:intron 30.0%
ATTGAAAATTAGTCCTTGGT+GGG - chr1_4:64112236-64112255 Msa0177210:intron 30.0%
! TGGTATCTAAATTCTGAAGA+AGG - chr1_4:64112309-64112328 Msa0177210:intron 30.0%
! GGTATCTAAATTCTGAAGAA+GGG - chr1_4:64112310-64112329 Msa0177210:intron 30.0%
GTTTATGTGTTTATGTGAGT+GGG + chr1_4:64112397-64112416 None:intergenic 30.0%
AGTTTATGTGTTTATGTGAG+TGG + chr1_4:64112398-64112417 None:intergenic 30.0%
TTAAACACATATACTTTGGC+AGG + chr1_4:64112516-64112535 None:intergenic 30.0%
ACCATCTTAATTATATCTCG+GGG - chr1_4:64112729-64112748 Msa0177210:intron 30.0%
TGTTAAAACTACCAAACGTT+TGG - chr1_4:64112824-64112843 Msa0177210:intron 30.0%
! TTTCTCAAGAAGTAACCTTT+TGG + chr1_4:64112929-64112948 None:intergenic 30.0%
TACTTCTTGAGAAACCTATT+TGG - chr1_4:64112935-64112954 Msa0177210:intron 30.0%
TCAGACAAAATAATTACCAG+CGG + chr1_4:64112972-64112991 None:intergenic 30.0%
CTGAATAGATGTATTTCAAC+AGG - chr1_4:64112988-64113007 Msa0177210:intron 30.0%
!!! GAAAATCTTTTTGGGATTCT+TGG - chr1_4:64113078-64113097 Msa0177210:intron 30.0%
TCAACAAGAATTTCTCAAAG+AGG + chr1_4:64113129-64113148 None:intergenic 30.0%
AAAAGAGACATTCTTCAAGA+CGG + chr1_4:64113242-64113261 None:intergenic 30.0%
AAAAATACTGTAGCGAGATT+AGG + chr1_4:64113270-64113289 None:intergenic 30.0%
!!! CAGTATTTTTTTTCCCTTTC+TGG - chr1_4:64113280-64113299 Msa0177210:intron 30.0%
TGCATTCTTCCTGAAAATAA+TGG + chr1_4:64113534-64113553 None:intergenic 30.0%
ATGTGTCATAAATTAAAGCG+TGG + chr1_4:64113691-64113710 None:intergenic 30.0%
!! TTTTGGAAAGGATATCAAAC+AGG - chr1_4:64113905-64113924 Msa0177210:intron 30.0%
!!! TTGCTACTTAGTTTTGAGTT+CGG - chr1_4:64114012-64114031 Msa0177210:intron 30.0%
GGTTAATATCCCTGAAATAT+AGG - chr1_4:64114382-64114401 Msa0177210:intron 30.0%
TAATATCCCTGAAATATAGG+TGG - chr1_4:64114385-64114404 Msa0177210:intron 30.0%
TGTATAGATAAGAGGATAGT+AGG - chr1_4:64114612-64114631 Msa0177210:intron 30.0%
AAATGAAGACATTTAGACTC+GGG + chr1_4:64114754-64114773 None:intergenic 30.0%
CAAATGAAGACATTTAGACT+CGG + chr1_4:64114755-64114774 None:intergenic 30.0%
GTCTTCATTTGGAAAATTGA+TGG - chr1_4:64114764-64114783 Msa0177210:intron 30.0%
! TTTTACCATCCGATAATACT+TGG - chr1_4:64115038-64115057 Msa0177210:intron 30.0%
TTATACCAAGTATTATCGGA+TGG + chr1_4:64115046-64115065 None:intergenic 30.0%
AACAATCATAGGATCCATAA+AGG + chr1_4:64115192-64115211 None:intergenic 30.0%
AGAACAAGTATCTCAGTTAT+TGG - chr1_4:64115518-64115537 Msa0177210:intron 30.0%
TTGTGACTGAAATGAAAAAG+AGG + chr1_4:64115619-64115638 None:intergenic 30.0%
TATGCACACATAACAAATCA+TGG + chr1_4:64115736-64115755 None:intergenic 30.0%
!! CCAAACACCATTCTAAAATA+GGG + chr1_4:64115846-64115865 None:intergenic 30.0%
! TTCTGATTTGAAACATAGTG+TGG - chr1_4:64115885-64115904 Msa0177210:intron 30.0%
! TCTGATTTGAAACATAGTGT+GGG - chr1_4:64115886-64115905 Msa0177210:intron 30.0%
TCAAACATGCATTGAATTTC+AGG - chr1_4:64115956-64115975 Msa0177210:intron 30.0%
TGCTTGAATCATATCTTACT+TGG - chr1_4:64116082-64116101 Msa0177210:intron 30.0%
!! TTTTACCACAATGATGGAAA+AGG + chr1_4:64116132-64116151 None:intergenic 30.0%
! TCTGATTTTTACCACAATGA+TGG + chr1_4:64116138-64116157 None:intergenic 30.0%
TCATTGTGGTAAAAATCAGA+TGG - chr1_4:64116138-64116157 Msa0177210:intron 30.0%
TAAATGGTCAAGAACAAAAC+AGG + chr1_4:64116273-64116292 None:intergenic 30.0%
GTGACTAACATATTGCTTTA+TGG + chr1_4:64116332-64116351 None:intergenic 30.0%
TTTCTCCGTCTATCAAAATA+TGG - chr1_4:64116377-64116396 Msa0177210:intron 30.0%
!! CTTTTCATCCTTAAGGTATT+CGG - chr1_4:64116409-64116428 Msa0177210:intron 30.0%
! CCGTTTTCAATGTAGATAAA+TGG + chr1_4:64116803-64116822 None:intergenic 30.0%
! AAAATACCGAGTACATGTTT+TGG + chr1_4:64116958-64116977 None:intergenic 30.0%
AAGATCCAATAGTGTGAATG+CGG + chr1_4:64108300-64108319 None:intergenic 35.0%
AAGAAAGAGGGATAATCATG+GGG + chr1_4:64108355-64108374 None:intergenic 35.0%
GCAATAACATCTCTCTACAA+TGG + chr1_4:64108599-64108618 None:intergenic 35.0%
!!! TGGAGTTTTTTCTGAAGGAA+AGG - chr1_4:64108909-64108928 Msa0177210:intron 35.0%
!! TAATGGATTATCAAACGTGC+CGG - chr1_4:64109144-64109163 Msa0177210:CDS 35.0%
TTTACATCATTGCTTCTGGA+TGG + chr1_4:64109307-64109326 None:intergenic 35.0%
! CTCTTTTACATCATTGCTTC+TGG + chr1_4:64109311-64109330 None:intergenic 35.0%
GATGTAAAAGAGCAACAACA+AGG - chr1_4:64109319-64109338 Msa0177210:CDS 35.0%
ACAACACTCTATTGTAGAGT+CGG + chr1_4:64109474-64109493 None:intergenic 35.0%
GTCTTGATCATTTGCTTATG+GGG - chr1_4:64109492-64109511 Msa0177210:intron 35.0%
TCTTGATCATTTGCTTATGG+GGG - chr1_4:64109493-64109512 Msa0177210:intron 35.0%
AGATGGATAATTCAGAGAGA+GGG + chr1_4:64109864-64109883 None:intergenic 35.0%
AAGATGGATAATTCAGAGAG+AGG + chr1_4:64109865-64109884 None:intergenic 35.0%
TCAGAGCGGAAAAGATTTAT+AGG + chr1_4:64109922-64109941 None:intergenic 35.0%
! ACATTCAATTAGCTTCAGAG+CGG + chr1_4:64109936-64109955 None:intergenic 35.0%
TGAAGCTAATTGAATGTGCA+TGG - chr1_4:64109939-64109958 Msa0177210:intron 35.0%
GTATATGAACGCTAAGCTAA+AGG + chr1_4:64110001-64110020 None:intergenic 35.0%
!! TTTACTTTTACAACCTTCCC+CGG + chr1_4:64110067-64110086 None:intergenic 35.0%
CAAATAGAGGCAAAGTTACT+CGG + chr1_4:64110556-64110575 None:intergenic 35.0%
GACAAAATAATGACTCGTAG+AGG - chr1_4:64110779-64110798 Msa0177210:intron 35.0%
TATGACATGCCAAAAGAAAG+GGG + chr1_4:64110874-64110893 None:intergenic 35.0%
GTATGACATGCCAAAAGAAA+GGG + chr1_4:64110875-64110894 None:intergenic 35.0%
TGTATGACATGCCAAAAGAA+AGG + chr1_4:64110876-64110895 None:intergenic 35.0%
! TTCTTTTGGCATGTCATACA+TGG - chr1_4:64110876-64110895 Msa0177210:intron 35.0%
! CTAATTTTCTCAGGAAACTG+GGG - chr1_4:64110931-64110950 Msa0177210:intron 35.0%
AATCAAGAGAAAGTGAAGGA+AGG - chr1_4:64111137-64111156 Msa0177210:intron 35.0%
TATCAGTGTACAGTAACAAG+TGG + chr1_4:64111227-64111246 None:intergenic 35.0%
GATAACTGAATGTGCTAAGT+CGG - chr1_4:64111306-64111325 Msa0177210:intron 35.0%
! ATGGGATTGTATTGCTCTTT+TGG - chr1_4:64111654-64111673 Msa0177210:intron 35.0%
GCGTCAAAATAAAATGCTGA+TGG - chr1_4:64111990-64112009 Msa0177210:intron 35.0%
GAATGCCTAAAAAATTAGGC+AGG - chr1_4:64112083-64112102 Msa0177210:intron 35.0%
!!! AACCTCCTGCCTAATTTTTT+AGG + chr1_4:64112091-64112110 None:intergenic 35.0%
CAAATTCAGATTTCCATGGA+TGG + chr1_4:64112200-64112219 None:intergenic 35.0%
ACATATACTTTGGCAGGATA+GGG + chr1_4:64112510-64112529 None:intergenic 35.0%
ACCCCGAGATATAATTAAGA+TGG + chr1_4:64112733-64112752 None:intergenic 35.0%
ATTATATCTCGGGGTATAGT+TGG - chr1_4:64112738-64112757 Msa0177210:intron 35.0%
TTATATCTCGGGGTATAGTT+GGG - chr1_4:64112739-64112758 Msa0177210:intron 35.0%
AAACTACCAAACGTTTGGAA+TGG - chr1_4:64112829-64112848 Msa0177210:intron 35.0%
AGTTGTGCAAATATGATGTC+AGG + chr1_4:64112876-64112895 None:intergenic 35.0%
! AAGTAACCTTTTGGATGATC+AGG + chr1_4:64112920-64112939 None:intergenic 35.0%
CAGACAAAATAATTACCAGC+GGG + chr1_4:64112971-64112990 None:intergenic 35.0%
!! TCTCCTCTGGAAAATCTTTT+TGG - chr1_4:64113069-64113088 Msa0177210:intron 35.0%
!! CTCCTCTGGAAAATCTTTTT+GGG - chr1_4:64113070-64113089 Msa0177210:intron 35.0%
! ATCCCAAAAAGATTTTCCAG+AGG + chr1_4:64113075-64113094 None:intergenic 35.0%
TGGGATTCTTGGAAGTAATT+TGG - chr1_4:64113089-64113108 Msa0177210:intron 35.0%
CAAGAATTTCTCAAAGAGGA+GGG + chr1_4:64113125-64113144 None:intergenic 35.0%
ACAAGAATTTCTCAAAGAGG+AGG + chr1_4:64113126-64113145 None:intergenic 35.0%
GATAAAGAGGAGATACAACA+TGG + chr1_4:64113387-64113406 None:intergenic 35.0%
AGGAACTCATTAGGATAAAG+AGG + chr1_4:64113400-64113419 None:intergenic 35.0%
TAAGTTCCAAGATGCAATCA+AGG - chr1_4:64113600-64113619 Msa0177210:intron 35.0%
TTCAAACCTTGATTGCATCT+TGG + chr1_4:64113609-64113628 None:intergenic 35.0%
TACAAAAGAGTAAGTGGTGT+TGG + chr1_4:64113862-64113881 None:intergenic 35.0%
TTTGAGCATAGAATAGCAGA+TGG - chr1_4:64113937-64113956 Msa0177210:intron 35.0%
TTGAGCATAGAATAGCAGAT+GGG - chr1_4:64113938-64113957 Msa0177210:intron 35.0%
GAAAAATGGGTGTGCAAAAT+AGG + chr1_4:64114096-64114115 None:intergenic 35.0%
TCCAATATGTTCAAGGATAG+AGG - chr1_4:64114151-64114170 Msa0177210:intron 35.0%
TCCTCTATCCTTGAACATAT+TGG + chr1_4:64114155-64114174 None:intergenic 35.0%
AATTACTGCTTGATCTTTCG+CGG + chr1_4:64114189-64114208 None:intergenic 35.0%
TTAGCATCTATTCAATGCTC+TGG - chr1_4:64114348-64114367 Msa0177210:CDS 35.0%
AATGCTCTGGCAAATTCTTT+GGG - chr1_4:64114361-64114380 Msa0177210:CDS 35.0%
AAGCAAGTGATACTACTGTT+AGG - chr1_4:64114542-64114561 Msa0177210:intron 35.0%
TTCGAGTAGTTAGTTAGTAG+AGG - chr1_4:64114583-64114602 Msa0177210:intron 35.0%
ATAAGAGGATAGTAGGATAG+AGG - chr1_4:64114619-64114638 Msa0177210:intron 35.0%
TAAGAGGATAGTAGGATAGA+GGG - chr1_4:64114620-64114639 Msa0177210:intron 35.0%
CGAGTCTAAATGTCTTCATT+TGG - chr1_4:64114753-64114772 Msa0177210:intron 35.0%
!! TAGCAATGGCAATTGCTTTT+TGG + chr1_4:64114872-64114891 None:intergenic 35.0%
TAGCAAAGAGAAGTTAGCAA+TGG + chr1_4:64114886-64114905 None:intergenic 35.0%
! TGTTTTACTGCACCATACAA+TGG - chr1_4:64115135-64115154 Msa0177210:intron 35.0%
GCTCAACAAGAAACAATCAT+AGG + chr1_4:64115203-64115222 None:intergenic 35.0%
CAGAATAAATGTCACCTTCT+GGG + chr1_4:64115315-64115334 None:intergenic 35.0%
ACAGAATAAATGTCACCTTC+TGG + chr1_4:64115316-64115335 None:intergenic 35.0%
ACAGTTGAAGCAAAAGTCAT+TGG - chr1_4:64115416-64115435 Msa0177210:intron 35.0%
AAGTGAATTGTTCACTTCAG+TGG - chr1_4:64115812-64115831 Msa0177210:intron 35.0%
!!! CCCTATTTTAGAATGGTGTT+TGG - chr1_4:64115843-64115862 Msa0177210:intron 35.0%
!! GCCAAACACCATTCTAAAAT+AGG + chr1_4:64115847-64115866 None:intergenic 35.0%
TCAGATGGCAAAATCAATGA+AGG - chr1_4:64116153-64116172 Msa0177210:intron 35.0%
ATCAATGAAGGAACTCAAGA+AGG - chr1_4:64116165-64116184 Msa0177210:intron 35.0%
ACTTATAGAGTTAGTTGACG+AGG - chr1_4:64116231-64116250 Msa0177210:CDS 35.0%
AAAAACTTGAATCGCTATGC+CGG - chr1_4:64116546-64116565 Msa0177210:intron 35.0%
CACTAGTCCAGATATAAACA+AGG + chr1_4:64116701-64116720 None:intergenic 35.0%
! CTTGTTTATATCTGGACTAG+TGG - chr1_4:64116699-64116718 Msa0177210:intron 35.0%
TACTACCGCATTCACACTAT+TGG - chr1_4:64108292-64108311 Msa0177210:three_prime_UTR 40.0%
!! TTCTTTTGATTCTTCCCGCT+AGG - chr1_4:64108325-64108344 Msa0177210:three_prime_UTR 40.0%
TAATCATGGGGAATACCTAG+CGG + chr1_4:64108343-64108362 None:intergenic 40.0%
CGTGCAACAATTTGTGATCT+GGG + chr1_4:64108429-64108448 None:intergenic 40.0%
ACGTGCAACAATTTGTGATC+TGG + chr1_4:64108430-64108449 None:intergenic 40.0%
CTATTTGCACTGCACTCTTT+CGG - chr1_4:64108453-64108472 Msa0177210:three_prime_UTR 40.0%
CTTTGCTTACAACAGCAAGA+AGG - chr1_4:64108756-64108775 Msa0177210:CDS 40.0%
ATGAATCAACTTCAGGAAGC+TGG + chr1_4:64109006-64109025 None:intergenic 40.0%
! TCCTGAAGTTGATTCATTGC+CGG - chr1_4:64109009-64109028 Msa0177210:intron 40.0%
! AAGTTGATTCATTGCCGGAT+GGG - chr1_4:64109014-64109033 Msa0177210:intron 40.0%
TCCTCCTTGTAATCACTGAT+GGG + chr1_4:64109100-64109119 None:intergenic 40.0%
ATCCTCCTTGTAATCACTGA+TGG + chr1_4:64109101-64109120 None:intergenic 40.0%
ATCAGTGATTACAAGGAGGA+TGG - chr1_4:64109100-64109119 Msa0177210:CDS 40.0%
! GAGGATGGTTTCATTGATTG+TGG - chr1_4:64109115-64109134 Msa0177210:CDS 40.0%
!! AATGGATTATCAAACGTGCC+GGG - chr1_4:64109145-64109164 Msa0177210:CDS 40.0%
GTTCACTAATTTCGCTTACC+CGG + chr1_4:64109166-64109185 None:intergenic 40.0%
AAAGAGCAACAACAAGGAGA+AGG - chr1_4:64109325-64109344 Msa0177210:CDS 40.0%
ATGTGTGCATGTCTACTTTC+TGG - chr1_4:64109733-64109752 Msa0177210:intron 40.0%
TCAGAGAGAGGGTAATTTGA+GGG + chr1_4:64109853-64109872 None:intergenic 40.0%
TTCAGAGAGAGGGTAATTTG+AGG + chr1_4:64109854-64109873 None:intergenic 40.0%
!! TTACTTTTACAACCTTCCCC+GGG + chr1_4:64110066-64110085 None:intergenic 40.0%
GCTGCAACCACAATTAACAA+TGG + chr1_4:64110321-64110340 None:intergenic 40.0%
TAAAGGATGCATGTGCTTCA+GGG - chr1_4:64110373-64110392 Msa0177210:CDS 40.0%
CAATGCATGCAGAGATATAC+AGG + chr1_4:64110449-64110468 None:intergenic 40.0%
CTGTATATCTCTGCATGCAT+TGG - chr1_4:64110447-64110466 Msa0177210:intron 40.0%
TTTGTTCTCTGCCTTTCTCT+CGG - chr1_4:64110525-64110544 Msa0177210:intron 40.0%
AGTAGGGAATTCATTCGGAA+GGG - chr1_4:64110712-64110731 Msa0177210:intron 40.0%
GCGTGCACTTAAATCAGAAA+AGG - chr1_4:64110973-64110992 Msa0177210:intron 40.0%
!! AGTGAAGGAAGGTATTTGAG+AGG - chr1_4:64111148-64111167 Msa0177210:intron 40.0%
TGTTATAAACCGATGTGAGC+AGG + chr1_4:64111285-64111304 None:intergenic 40.0%
TGAGAAACACTTAGGGGAAA+TGG - chr1_4:64111824-64111843 Msa0177210:intron 40.0%
TGACGGCAAAAGCTACAAAA+AGG + chr1_4:64111936-64111955 None:intergenic 40.0%
TGACTCAAGCTTATCTCTGA+CGG + chr1_4:64111953-64111972 None:intergenic 40.0%
ATAAGCTTGAGTCACTATGC+AGG - chr1_4:64111959-64111978 Msa0177210:intron 40.0%
TAAGCTTGAGTCACTATGCA+GGG - chr1_4:64111960-64111979 Msa0177210:intron 40.0%
TGCCTAAAAAATTAGGCAGG+AGG - chr1_4:64112086-64112105 Msa0177210:intron 40.0%
! AGTCAGATTAGCCCCAAATT+TGG + chr1_4:64112129-64112148 None:intergenic 40.0%
ACAAGTGATTTCGCTTGTAG+TGG - chr1_4:64112149-64112168 Msa0177210:intron 40.0%
! AAAATTAGTCCTTGGTGGGT+TGG - chr1_4:64112240-64112259 Msa0177210:intron 40.0%
!! AAATTAGTCCTTGGTGGGTT+GGG - chr1_4:64112241-64112260 Msa0177210:intron 40.0%
ACTAAACATGAGAAATGGCC+AGG + chr1_4:64112344-64112363 None:intergenic 40.0%
!!! TGTTAGTTTTGCACTAGAGG+TGG + chr1_4:64112373-64112392 None:intergenic 40.0%
!!! GGATGTTAGTTTTGCACTAG+AGG + chr1_4:64112376-64112395 None:intergenic 40.0%
CACATATACTTTGGCAGGAT+AGG + chr1_4:64112511-64112530 None:intergenic 40.0%
CACCAAAGATATGGAATGGA+GGG + chr1_4:64112559-64112578 None:intergenic 40.0%
ACACCACCAAAGATATGGAA+TGG + chr1_4:64112563-64112582 None:intergenic 40.0%
!! TCCATATCTTTGGTGGTGTA+AGG - chr1_4:64112564-64112583 Msa0177210:intron 40.0%
ACCTTACACCACCAAAGATA+TGG + chr1_4:64112568-64112587 None:intergenic 40.0%
! TACCAAACGTTTGGAATGGA+GGG - chr1_4:64112833-64112852 Msa0177210:intron 40.0%
CACTTTCCTGATCATCCAAA+AGG - chr1_4:64112911-64112930 Msa0177210:intron 40.0%
AAATAATTACCAGCGGGCAT+TGG + chr1_4:64112965-64112984 None:intergenic 40.0%
TGGTTGTTGCTACTGATATG+TGG - chr1_4:64113322-64113341 Msa0177210:intron 40.0%
ACATGAATGTGACTTCTACC+TGG - chr1_4:64113429-64113448 Msa0177210:intron 40.0%
AAGAATCTGATCACACTACC+AGG + chr1_4:64113450-64113469 None:intergenic 40.0%
ATGCAAACGTGTATCAACTG+AGG - chr1_4:64113549-64113568 Msa0177210:intron 40.0%
TGCAAACGTGTATCAACTGA+GGG - chr1_4:64113550-64113569 Msa0177210:intron 40.0%
CTAAACTAGCACACCCAAAT+TGG - chr1_4:64113780-64113799 Msa0177210:intron 40.0%
! ATTCTCTCTGGTGCCAATTT+GGG + chr1_4:64113796-64113815 None:intergenic 40.0%
ATTACTGCTTGATCTTTCGC+GGG + chr1_4:64114188-64114207 None:intergenic 40.0%
CAATGCTCTGGCAAATTCTT+TGG - chr1_4:64114360-64114379 Msa0177210:CDS 40.0%
TCTAAATGGTGCCTAGTTGA+TGG - chr1_4:64114473-64114492 Msa0177210:intron 40.0%
TTGATGGAAACTGGTAGGAA+TGG - chr1_4:64114489-64114508 Msa0177210:intron 40.0%
GAAATAGAGAGATCCACCAA+GGG + chr1_4:64114718-64114737 None:intergenic 40.0%
AGAAATAGAGAGATCCACCA+AGG + chr1_4:64114719-64114738 None:intergenic 40.0%
TGCTAACTTCTCTTTGCTAC+AGG - chr1_4:64114887-64114906 Msa0177210:intron 40.0%
TGATTGCCTTTCTCAGCTAA+AGG - chr1_4:64114941-64114960 Msa0177210:CDS 40.0%
AAAGGGAACACGTTCCTTTA+TGG - chr1_4:64115175-64115194 Msa0177210:intron 40.0%
AGAGAAATTCCAACAGTTCC+AGG - chr1_4:64115581-64115600 Msa0177210:intron 40.0%
AAAAAACCACCTGGAACTGT+TGG + chr1_4:64115593-64115612 None:intergenic 40.0%
AAGAGGACAAAAAAACCACC+TGG + chr1_4:64115602-64115621 None:intergenic 40.0%
!! AAATCAGAACCAGAAGTGCT+AGG + chr1_4:64115874-64115893 None:intergenic 40.0%
CAATGAGACCGAATACCTTA+AGG + chr1_4:64116420-64116439 None:intergenic 40.0%
! TAAGGTATTCGGTCTCATTG+CGG - chr1_4:64116420-64116439 Msa0177210:intron 40.0%
CAACCACCTCTTCTTCATAT+TGG + chr1_4:64116638-64116657 None:intergenic 40.0%
GGTTGCAAACAACTTCTAGA+AGG - chr1_4:64116653-64116672 Msa0177210:intron 40.0%
! GCAAACAACTTCTAGAAGGA+AGG - chr1_4:64116657-64116676 Msa0177210:intron 40.0%
!! TGGCATGTCTTGGTTTGTTA+GGG - chr1_4:64116719-64116738 Msa0177210:intron 40.0%
!! CATTGCTTTTGTGCAAACTG+AGG + chr1_4:64116885-64116904 None:intergenic 40.0%
GACTGTCCAAAACATGTACT+CGG - chr1_4:64116949-64116968 Msa0177210:intron 40.0%
! TTTTGCGTATGCAGTGTGTT+TGG - chr1_4:64116975-64116994 Msa0177210:intron 40.0%
!!! ATGCAGTGTGTTTGGTGTTT+TGG - chr1_4:64116983-64117002 Msa0177210:intron 40.0%
!!! TGCAGTGTGTTTGGTGTTTT+GGG - chr1_4:64116984-64117003 Msa0177210:intron 40.0%
AATCATGGGGAATACCTAGC+GGG + chr1_4:64108342-64108361 None:intergenic 45.0%
AACAGCAAGAAGGTAGCTGT+AGG - chr1_4:64108766-64108785 Msa0177210:CDS 45.0%
ACAGCAAGAAGGTAGCTGTA+GGG - chr1_4:64108767-64108786 Msa0177210:CDS 45.0%
AGTGGCGAGAATAGAATTGC+AGG + chr1_4:64108809-64108828 None:intergenic 45.0%
GCAATTCTATTCTCGCCACT+AGG - chr1_4:64108809-64108828 Msa0177210:CDS 45.0%
TCCGGCAATGAATCAACTTC+AGG + chr1_4:64109013-64109032 None:intergenic 45.0%
! GAAGTTGATTCATTGCCGGA+TGG - chr1_4:64109013-64109032 Msa0177210:intron 45.0%
GAAGCCCATCAGTGATTACA+AGG - chr1_4:64109093-64109112 Msa0177210:CDS 45.0%
! TTTTCACCTCTCAGACTGCT+CGG - chr1_4:64109231-64109250 Msa0177210:intron 45.0%
TCGGAAACAGAACTAGCTAG+AGG + chr1_4:64109277-64109296 None:intergenic 45.0%
!!! TGGAATTTTTTAGGTGCCCC+TGG - chr1_4:64109635-64109654 Msa0177210:intron 45.0%
!!! GGAATTTTTTAGGTGCCCCT+GGG - chr1_4:64109636-64109655 Msa0177210:intron 45.0%
TAGACATGCACACATCAGCA+AGG + chr1_4:64109728-64109747 None:intergenic 45.0%
! TACTTTTACAACCTTCCCCG+GGG + chr1_4:64110065-64110084 None:intergenic 45.0%
GGTTGCAGCTAAACAACCTT+TGG - chr1_4:64110332-64110351 Msa0177210:intron 45.0%
!! GACAAAAGCACTGCCTGTAA+AGG - chr1_4:64110356-64110375 Msa0177210:intron 45.0%
GAAGCACATGCATCCTTTAC+AGG + chr1_4:64110372-64110391 None:intergenic 45.0%
GTAAAGGATGCATGTGCTTC+AGG - chr1_4:64110372-64110391 Msa0177210:CDS 45.0%
AAGACTCAGGGGGTTTGATT+AGG - chr1_4:64110681-64110700 Msa0177210:intron 45.0%
GAGTAGGGAATTCATTCGGA+AGG - chr1_4:64110711-64110730 Msa0177210:intron 45.0%
TGTCATACATGGCTACGTTC+AGG - chr1_4:64110887-64110906 Msa0177210:intron 45.0%
GAAACTGGGGAAAAACGCAA+GGG - chr1_4:64110944-64110963 Msa0177210:intron 45.0%
!! GTATTGGCTGAAAGAGATGC+AGG - chr1_4:64111028-64111047 Msa0177210:intron 45.0%
CTAGAAGATCCTGCTCACAT+CGG - chr1_4:64111273-64111292 Msa0177210:intron 45.0%
!!! CGGGTTTTAGTTTCCATCCA+TGG - chr1_4:64112184-64112203 Msa0177210:intron 45.0%
TGTACACAAGTGCCTCATCA+AGG + chr1_4:64112282-64112301 None:intergenic 45.0%
ATGGAGGGAGTTGTTTAGGA+GGG + chr1_4:64112544-64112563 None:intergenic 45.0%
AATGGAGGGAGTTGTTTAGG+AGG + chr1_4:64112545-64112564 None:intergenic 45.0%
TGGAATGGAGGGAGTTGTTT+AGG + chr1_4:64112548-64112567 None:intergenic 45.0%
CTCCCTCCATTCCATATCTT+TGG - chr1_4:64112554-64112573 Msa0177210:intron 45.0%
CCACCAAAGATATGGAATGG+AGG + chr1_4:64112560-64112579 None:intergenic 45.0%
CCTCCATTCCATATCTTTGG+TGG - chr1_4:64112557-64112576 Msa0177210:intron 45.0%
GGGGTATAGTTGGGAAACAA+AGG - chr1_4:64112748-64112767 Msa0177210:intron 45.0%
! CTACCAAACGTTTGGAATGG+AGG - chr1_4:64112832-64112851 Msa0177210:intron 45.0%
TAGGCCTCACATTTGCATTC+AGG - chr1_4:64113038-64113057 Msa0177210:intron 45.0%
AGGCCTCACATTTGCATTCA+GGG - chr1_4:64113039-64113058 Msa0177210:intron 45.0%
TTGCCCTGAATGCAAATGTG+AGG + chr1_4:64113045-64113064 None:intergenic 45.0%
GGACATGAAAGAGCCAGAAA+GGG + chr1_4:64113296-64113315 None:intergenic 45.0%
AGGACATGAAAGAGCCAGAA+AGG + chr1_4:64113297-64113316 None:intergenic 45.0%
GCTCTTTCATGTCCTAGTCA+TGG - chr1_4:64113302-64113321 Msa0177210:intron 45.0%
CAGTAGCAACAACCATGACT+AGG + chr1_4:64113317-64113336 None:intergenic 45.0%
GCAAACGTGTATCAACTGAG+GGG - chr1_4:64113551-64113570 Msa0177210:intron 45.0%
! GATTCTCTCTGGTGCCAATT+TGG + chr1_4:64113797-64113816 None:intergenic 45.0%
ACCAGAGAGAATCGAACCTA+AGG - chr1_4:64113804-64113823 Msa0177210:intron 45.0%
!! AGAGTAAGTGGTGTTGGCTT+GGG + chr1_4:64113856-64113875 None:intergenic 45.0%
!! AAGAGTAAGTGGTGTTGGCT+TGG + chr1_4:64113857-64113876 None:intergenic 45.0%
AAGAGTAGAGATGTCCATCC+AGG + chr1_4:64114071-64114090 None:intergenic 45.0%
TTAACCCACACCCACTTAGT+GGG - chr1_4:64114237-64114256 Msa0177210:intron 45.0%
TTATCCCACTAAGTGGGTGT+GGG + chr1_4:64114244-64114263 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr1_4:64114250-64114269 None:intergenic 45.0%
! ACAAGCCTTATCCCACTAAG+TGG + chr1_4:64114251-64114270 None:intergenic 45.0%
ATCCCTGAAATATAGGTGGC+TGG - chr1_4:64114389-64114408 Msa0177210:intron 45.0%
TCCCTGAAATATAGGTGGCT+GGG - chr1_4:64114390-64114409 Msa0177210:intron 45.0%
ACCCAGCCACCTATATTTCA+GGG + chr1_4:64114394-64114413 None:intergenic 45.0%
AACCCAGCCACCTATATTTC+AGG + chr1_4:64114395-64114414 None:intergenic 45.0%
CCTACCAGTTTCCATCAACT+AGG + chr1_4:64114487-64114506 None:intergenic 45.0%
!! CCTAGTTGATGGAAACTGGT+AGG - chr1_4:64114484-64114503 Msa0177210:intron 45.0%
! CAGTGACTCTTTTGCAGAAG+AGG - chr1_4:64114689-64114708 Msa0177210:intron 45.0%
TTTGCAGAAGAGGAAACCCT+TGG - chr1_4:64114699-64114718 Msa0177210:intron 45.0%
!!! TATCTTTTCTAGCTGGCCCA+TGG - chr1_4:64114815-64114834 Msa0177210:intron 45.0%
TGCTACAGGATGTGAGTATC+AGG - chr1_4:64114901-64114920 Msa0177210:intron 45.0%
TATCAGGCTCGAAGAACGAA+AGG - chr1_4:64114917-64114936 Msa0177210:CDS 45.0%
CGTTCTCCTTTAGCTGAGAA+AGG + chr1_4:64114950-64114969 None:intergenic 45.0%
ACATGAGGAAAGATCTGCTC+AGG - chr1_4:64115470-64115489 Msa0177210:intron 45.0%
GAAATTCCAACAGTTCCAGG+TGG - chr1_4:64115584-64115603 Msa0177210:intron 45.0%
! GTCGTCCTTTTCCATCATTG+TGG - chr1_4:64116124-64116143 Msa0177210:intron 45.0%
TCGGCTCCAATATGAAGAAG+AGG - chr1_4:64116629-64116648 Msa0177210:intron 45.0%
GCTCCAATATGAAGAAGAGG+TGG - chr1_4:64116632-64116651 Msa0177210:intron 45.0%
!! GTGGCATGTCTTGGTTTGTT+AGG - chr1_4:64116718-64116737 Msa0177210:intron 45.0%
! AATGAGACACGCGATTTTGC+CGG - chr1_4:64116901-64116920 Msa0177210:intron 45.0%
! ATTTTGCCGGAAACTTGGCT+TGG - chr1_4:64116914-64116933 Msa0177210:intron 45.0%
! TTTTGCCGGAAACTTGGCTT+GGG - chr1_4:64116915-64116934 Msa0177210:intron 45.0%
!!! GCAGTGTGTTTGGTGTTTTG+GGG - chr1_4:64116985-64117004 Msa0177210:intron 45.0%
!!! CAGTGTGTTTGGTGTTTTGG+GGG - chr1_4:64116986-64117005 Msa0177210:intron 45.0%
!! TTAAAAAATAAAATAAAATC+AGG + chr1_4:64108875-64108894 None:intergenic 5.0%
!! AAAATTATTATTAATTAAAG+TGG + chr1_4:64110103-64110122 None:intergenic 5.0%
!! TATTCTATAATATATAAATA+GGG - chr1_4:64116294-64116313 Msa0177210:CDS 5.0%
!! TCAGGAAGCTGGTTTGCTTC+TGG + chr1_4:64108995-64109014 None:intergenic 50.0%
!! ATTGCCGGATGGGTTTGTTG+AGG - chr1_4:64109024-64109043 Msa0177210:intron 50.0%
!! TTGCCGGATGGGTTTGTTGA+GGG - chr1_4:64109025-64109044 Msa0177210:intron 50.0%
TGTTCAGGAGTTGGAGTAGC+AGG + chr1_4:64109070-64109089 None:intergenic 50.0%
GGCTTCTCTTGTTCAGGAGT+TGG + chr1_4:64109079-64109098 None:intergenic 50.0%
!! CTGATGGGCTTCTCTTGTTC+AGG + chr1_4:64109085-64109104 None:intergenic 50.0%
GCCCATCAGTGATTACAAGG+AGG - chr1_4:64109096-64109115 Msa0177210:CDS 50.0%
GCTTCTGGATGGTTGAGACT+CGG + chr1_4:64109296-64109315 None:intergenic 50.0%
!! CAAAAGGGGCATCGATGGTT+AGG + chr1_4:64109376-64109395 None:intergenic 50.0%
!! GTCTACAAAAGGGGCATCGA+TGG + chr1_4:64109381-64109400 None:intergenic 50.0%
AATGGGACCTATTGCACCCA+GGG + chr1_4:64109655-64109674 None:intergenic 50.0%
AAATGGGACCTATTGCACCC+AGG + chr1_4:64109656-64109675 None:intergenic 50.0%
! ACTTTTACAACCTTCCCCGG+GGG + chr1_4:64110064-64110083 None:intergenic 50.0%
! GGCAGTGCTTTTGTCTCCAA+AGG + chr1_4:64110351-64110370 None:intergenic 50.0%
GGAAACTGGGGAAAAACGCA+AGG - chr1_4:64110943-64110962 Msa0177210:intron 50.0%
TGGCTGAAAGAGATGCAGGT+TGG - chr1_4:64111032-64111051 Msa0177210:intron 50.0%
! TTCGCTTGTAGTGGAACACC+TGG - chr1_4:64112158-64112177 Msa0177210:intron 50.0%
! TGTAGTGGAACACCTGGTCA+CGG - chr1_4:64112164-64112183 Msa0177210:intron 50.0%
GGAAACTAAAACCCGTGACC+AGG + chr1_4:64112179-64112198 None:intergenic 50.0%
AGATGAAACCCAACCCACCA+AGG + chr1_4:64112252-64112271 None:intergenic 50.0%
CATCTTGCACTGCCTTGATG+AGG - chr1_4:64112267-64112286 Msa0177210:intron 50.0%
TGAAGAAGGGTAGCATGTCC+TGG - chr1_4:64112323-64112342 Msa0177210:intron 50.0%
TGGAGGGAGTTGTTTAGGAG+GGG + chr1_4:64112543-64112562 None:intergenic 50.0%
CTCCCTCCATTCCAAACGTT+TGG + chr1_4:64112838-64112857 None:intergenic 50.0%
!! CGGGCATTGGACTTCCAAAT+AGG + chr1_4:64112952-64112971 None:intergenic 50.0%
TCAGGGCAATTACTCTCCTC+TGG - chr1_4:64113056-64113075 Msa0177210:intron 50.0%
CAACTGAGGGGCAAAACTTG+AGG - chr1_4:64113563-64113582 Msa0177210:intron 50.0%
TGAGGGGCAAAACTTGAGGA+TGG - chr1_4:64113567-64113586 Msa0177210:intron 50.0%
GCCTTAGGTTCGATTCTCTC+TGG + chr1_4:64113808-64113827 None:intergenic 50.0%
GAATCGAACCTAAGGCCTTG+AGG - chr1_4:64113812-64113831 Msa0177210:intron 50.0%
! TTGGAGTTTGCTCCTCCTCA+AGG + chr1_4:64113830-64113849 None:intergenic 50.0%
TTGAGGAGGAGCAAACTCCA+AGG - chr1_4:64113829-64113848 Msa0177210:intron 50.0%
AAAGACAGGGTGAGCATTCC+TGG - chr1_4:64114050-64114069 Msa0177210:intron 50.0%
GTTAACCCACACCCACTTAG+TGG - chr1_4:64114236-64114255 Msa0177210:intron 50.0%
CTTATCCCACTAAGTGGGTG+TGG + chr1_4:64114245-64114264 None:intergenic 50.0%
CACACCCACTTAGTGGGATA+AGG - chr1_4:64114243-64114262 Msa0177210:intron 50.0%
!! GGTGCCTAGTTGATGGAAAC+TGG - chr1_4:64114480-64114499 Msa0177210:intron 50.0%
TGAGCAGCAATATGCCCAGA+AGG - chr1_4:64115298-64115317 Msa0177210:intron 50.0%
CGTTTGCAGCTGACAACTGA+TGG - chr1_4:64115558-64115577 Msa0177210:intron 50.0%
TTGGCTGATCCTAGCACTTC+TGG - chr1_4:64115862-64115881 Msa0177210:intron 50.0%
!! TCTGGACTAGTGGCATGTCT+TGG - chr1_4:64116709-64116728 Msa0177210:intron 50.0%
! ACGCGATTTTGCCGGAAACT+TGG - chr1_4:64116909-64116928 Msa0177210:intron 50.0%
AAGCTCCCAAGCCAAGTTTC+CGG + chr1_4:64116923-64116942 None:intergenic 50.0%
GTGCCCTCAACAAACCCATC+CGG + chr1_4:64109031-64109050 None:intergenic 55.0%
AGTAGCAGGCGCAACAGGTT+CGG + chr1_4:64109056-64109075 None:intergenic 55.0%
ATGGGACCTATTGCACCCAG+GGG + chr1_4:64109654-64109673 None:intergenic 55.0%
AGACGGAGTTCAAATCCCCC+CGG - chr1_4:64110045-64110064 Msa0177210:CDS 55.0%
! CTTTTACAACCTTCCCCGGG+GGG + chr1_4:64110063-64110082 None:intergenic 55.0%
GGATGCATGTGCTTCAGGGA+TGG - chr1_4:64110377-64110396 Msa0177210:CDS 55.0%
ACTCGGAGAGTCCGAGAGAA+AGG + chr1_4:64110539-64110558 None:intergenic 55.0%
! GTAGTGGAACACCTGGTCAC+GGG - chr1_4:64112165-64112184 Msa0177210:intron 55.0%
GCACTTGTGTACAGAGCTGC+TGG - chr1_4:64112289-64112308 Msa0177210:intron 55.0%
TTTGGAAGTCCAATGCCCGC+TGG - chr1_4:64112953-64112972 Msa0177210:intron 55.0%
TCGAACCTAAGGCCTTGAGG+AGG - chr1_4:64113815-64113834 Msa0177210:intron 55.0%
TTGCTCCTCCTCAAGGCCTT+AGG + chr1_4:64113823-64113842 None:intergenic 55.0%
ACAGGGTGAGCATTCCTGGA+TGG - chr1_4:64114054-64114073 Msa0177210:intron 55.0%
ACTGCTTGATCTTTCGCGGG+AGG + chr1_4:64114185-64114204 None:intergenic 55.0%
GCAGAAGAGGAAACCCTTGG+TGG - chr1_4:64114702-64114721 Msa0177210:intron 55.0%
GGGAGGGGTGAAACAAATGC+AGG + chr1_4:64115080-64115099 None:intergenic 55.0%
! CAGCTTTTGAGCTGTGGGAG+GGG + chr1_4:64115095-64115114 None:intergenic 55.0%
! CCAGCTTTTGAGCTGTGGGA+GGG + chr1_4:64115096-64115115 None:intergenic 55.0%
CCTCCCACAGCTCAAAAGCT+GGG - chr1_4:64115094-64115113 Msa0177210:intron 55.0%
! GAGCCCAGCTTTTGAGCTGT+GGG + chr1_4:64115100-64115119 None:intergenic 55.0%
! AGAGCCCAGCTTTTGAGCTG+TGG + chr1_4:64115101-64115120 None:intergenic 55.0%
CGAGCGCTTGAAGAAACAGC+TGG - chr1_4:64116502-64116521 Msa0177210:intron 55.0%
ATCGCTATGCCGGTCACTTC+AGG - chr1_4:64116556-64116575 Msa0177210:intron 55.0%
TCCTCTCTGCCTGAAGTGAC+CGG + chr1_4:64116568-64116587 None:intergenic 55.0%
GTTGGAGTAGCAGGCGCAAC+AGG + chr1_4:64109061-64109080 None:intergenic 60.0%
TCACCTCTCAGACTGCTCGG+TGG - chr1_4:64109234-64109253 Msa0177210:intron 60.0%
! CTCTCAGACTGCTCGGTGGA+GGG - chr1_4:64109238-64109257 Msa0177210:intron 60.0%
TAGGTGCCCCTGGGTGCAAT+AGG - chr1_4:64109645-64109664 Msa0177210:intron 60.0%
GACGGAGTTCAAATCCCCCC+GGG - chr1_4:64110046-64110065 Msa0177210:CDS 60.0%
ACGGAGTTCAAATCCCCCCG+GGG - chr1_4:64110047-64110066 Msa0177210:CDS 60.0%
AGTTCAAATCCCCCCGGGGA+AGG - chr1_4:64110051-64110070 Msa0177210:CDS 60.0%
!! GTGGTGTTGGCTTGGGACCT+TGG + chr1_4:64113849-64113868 None:intergenic 60.0%
GCTTGATCTTTCGCGGGAGG+TGG + chr1_4:64114182-64114201 None:intergenic 60.0%
CCCTCCCACAGCTCAAAAGC+TGG - chr1_4:64115093-64115112 Msa0177210:intron 60.0%
! CCCAGCTTTTGAGCTGTGGG+AGG + chr1_4:64115097-64115116 None:intergenic 60.0%
CCTCCACCGAGCAGTCTGAG+AGG + chr1_4:64109240-64109259 None:intergenic 65.0%
! CCTCTCAGACTGCTCGGTGG+AGG - chr1_4:64109237-64109256 Msa0177210:intron 65.0%
GCCGGTCACTTCAGGCAGAG+AGG - chr1_4:64116564-64116583 Msa0177210:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 64108258 64117079 64108258 ID=Msa0177210;Name=Msa0177210
chr1_4 mRNA 64108258 64117079 64108258 ID=Msa0177210-mRNA-1;Parent=Msa0177210;Name=Msa0177210-mRNA-1;_AED=0.08;_eAED=0.08;_QI=94|1|1|1|0.91|0.84|13|436|417
chr1_4 exon 64108258 64108837 64108258 ID=Msa0177210-mRNA-1:exon:20865;Parent=Msa0177210-mRNA-1
chr1_4 exon 64109085 64109180 64109085 ID=Msa0177210-mRNA-1:exon:20864;Parent=Msa0177210-mRNA-1
chr1_4 exon 64109303 64109359 64109303 ID=Msa0177210-mRNA-1:exon:20863;Parent=Msa0177210-mRNA-1
chr1_4 exon 64109735 64109917 64109735 ID=Msa0177210-mRNA-1:exon:20862;Parent=Msa0177210-mRNA-1
chr1_4 exon 64110018 64110084 64110018 ID=Msa0177210-mRNA-1:exon:20861;Parent=Msa0177210-mRNA-1
chr1_4 exon 64110364 64110428 64110364 ID=Msa0177210-mRNA-1:exon:20860;Parent=Msa0177210-mRNA-1
chr1_4 exon 64111716 64111793 64111716 ID=Msa0177210-mRNA-1:exon:20859;Parent=Msa0177210-mRNA-1
chr1_4 exon 64113326 64113393 64113326 ID=Msa0177210-mRNA-1:exon:20858;Parent=Msa0177210-mRNA-1
chr1_4 exon 64114288 64114393 64114288 ID=Msa0177210-mRNA-1:exon:20857;Parent=Msa0177210-mRNA-1
chr1_4 exon 64114912 64114997 64114912 ID=Msa0177210-mRNA-1:exon:20856;Parent=Msa0177210-mRNA-1
chr1_4 exon 64115973 64116092 64115973 ID=Msa0177210-mRNA-1:exon:20855;Parent=Msa0177210-mRNA-1
chr1_4 exon 64116171 64116359 64116171 ID=Msa0177210-mRNA-1:exon:20854;Parent=Msa0177210-mRNA-1
chr1_4 exon 64116991 64117079 64116991 ID=Msa0177210-mRNA-1:exon:20853;Parent=Msa0177210-mRNA-1
chr1_4 five_prime_UTR 64116991 64117079 64116991 ID=Msa0177210-mRNA-1:five_prime_utr;Parent=Msa0177210-mRNA-1
chr1_4 five_prime_UTR 64116355 64116359 64116355 ID=Msa0177210-mRNA-1:five_prime_utr;Parent=Msa0177210-mRNA-1
chr1_4 CDS 64116171 64116354 64116171 ID=Msa0177210-mRNA-1:cds;Parent=Msa0177210-mRNA-1
chr1_4 CDS 64115973 64116092 64115973 ID=Msa0177210-mRNA-1:cds;Parent=Msa0177210-mRNA-1
chr1_4 CDS 64114912 64114997 64114912 ID=Msa0177210-mRNA-1:cds;Parent=Msa0177210-mRNA-1
chr1_4 CDS 64114288 64114393 64114288 ID=Msa0177210-mRNA-1:cds;Parent=Msa0177210-mRNA-1
chr1_4 CDS 64113326 64113393 64113326 ID=Msa0177210-mRNA-1:cds;Parent=Msa0177210-mRNA-1
chr1_4 CDS 64111716 64111793 64111716 ID=Msa0177210-mRNA-1:cds;Parent=Msa0177210-mRNA-1
chr1_4 CDS 64110364 64110428 64110364 ID=Msa0177210-mRNA-1:cds;Parent=Msa0177210-mRNA-1
chr1_4 CDS 64110018 64110084 64110018 ID=Msa0177210-mRNA-1:cds;Parent=Msa0177210-mRNA-1
chr1_4 CDS 64109735 64109917 64109735 ID=Msa0177210-mRNA-1:cds;Parent=Msa0177210-mRNA-1
chr1_4 CDS 64109303 64109359 64109303 ID=Msa0177210-mRNA-1:cds;Parent=Msa0177210-mRNA-1
chr1_4 CDS 64109085 64109180 64109085 ID=Msa0177210-mRNA-1:cds;Parent=Msa0177210-mRNA-1
chr1_4 CDS 64108694 64108837 64108694 ID=Msa0177210-mRNA-1:cds;Parent=Msa0177210-mRNA-1
chr1_4 three_prime_UTR 64108258 64108693 64108258 ID=Msa0177210-mRNA-1:three_prime_utr;Parent=Msa0177210-mRNA-1
Gene Sequence

>Msa0177210

ATGCAAAATCCAGAAGCAAACCAGCTTCCTGAAGTTGATTCATTGCCGGATGGGTTTGTTGAGGGCACTGCCGAACCTGTTGCGCCTGCTACTCCAACTCCTGAACAAGAGAAGCCCATCAGTGATTACAAGGAGGATGGTTTCATTGATTGTGGTCATTCTAATGGATTATCAAACGTGCCGGACTGCTCGGTGGAGGGACATATTGCAGCACCTCTAGCTAGTTCTGTTTCCGAGTCTCAACCATCCAGAAGCAATGATGTAAAAGAGCAACAACAAGGAGAAGGCCAGAGTTCAGATAAATCTAAACAACCTTTGGAGACAAAAGCACTGCCTGTAAAGGATGCATGTGCTTCAGGGATGGTTGATTCTTCAAAAAACAAAAAATCAGAAACTGGGGAAAAACGCAAGGGTTCAAAGCGTGCACTTAAATCAGAAAAGGAGCTCTTAGAGTTTTCACTCAAGTATCAACAAGTATTGGCTGAAAGAGATGCAGCTTTTGCCGTCAGAGATAAGCTTGAGTCACTATGCAGGGAGTTACAGCGTCAAAATAAAATGCTGATGGAAGAATGCAAACGTGTATCAACTGAGGGGCAAAACTTGAGGATGGACTTGTCAGCTAAGTTCCAAGATGCAATCAAGGATGTGAGTATCAGGCTCGAAGAACGAAAGGATGATTGCCTTTCTCAGCTAAAGGAGAACGACATGTTAAGAAACAATTTAAAGCAACTTGCTGAGCAATATGAACTATCTGAGCAGCAATATGCCCAGAAGTTGAAGCAAAAGTCATTGGAGCTACAGATTGCAGAATTAAAAATTAAGCAACATGAGGAAAGATCTGCTCAGGAACAGTCACAAATGAAATTATATGCAGAACAAGTATCTCAGTTATTGGCGACTGAGAAGAATTTGCGTTTGCAGCTGACAACTGATGGAGAGAAATTCCAACAGTTCCAGGAAGCATTGACAAAGAGCAATGATGTATTTGAAACATTTAAACAAGAGATTGAGAAGATGGCAAAATCAATGAAGGAACTCAAGAAGGAGAATCAATTTTTGAAGAGTAAATCAGAAAAGTCTGATATTACACTTATAGAGTTAGTTGACGAGCGCGAGCGCTTGAAGAAACAGCTGGAGAAAACGAAAAATCAAAAAGAAAAACTTGAATCGCTATGCCGGTCACTTCAGGCAGAGAGGAAGCAAAGTTTATCCGAGAACAAGAGTAATAATAGTAACAACTCGGCTCCAATATGA

Protein sequence

>Msa0177210

MQNPEANQLPEVDSLPDGFVEGTAEPVAPATPTPEQEKPISDYKEDGFIDCGHSNGLSNVPDCSVEGHIAAPLASSVSESQPSRSNDVKEQQQGEGQSSDKSKQPLETKALPVKDACASGMVDSSKNKKSETGEKRKGSKRALKSEKELLEFSLKYQQVLAERDAAFAVRDKLESLCRELQRQNKMLMEECKRVSTEGQNLRMDLSAKFQDAIKDVSIRLEERKDDCLSQLKENDMLRNNLKQLAEQYELSEQQYAQKLKQKSLELQIAELKIKQHEERSAQEQSQMKLYAEQVSQLLATEKNLRLQLTTDGEKFQQFQEALTKSNDVFETFKQEIEKMAKSMKELKKENQFLKSKSEKSDITLIELVDERERLKKQLEKTKNQKEKLESLCRSLQAERKQSLSENKSNNSNNSAPI*