AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0037160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0037160 MtrunA17_Chr1g0200061 95.305 426 11 1 1 417 1 426 0.0 800
Msa0037160 MtrunA17_Chr1g0204031 78.431 51 11 0 165 215 432 482 5.24e-17 83.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0037160 AT5G50840.1 61.814 419 138 6 1 415 1 401 6.61e-152 436
Msa0037160 AT5G50840.2 61.190 420 140 6 1 415 1 402 2.58e-150 432

Find 97 sgRNAs with CRISPR-Local

Find 557 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAAAGGATGCATGTGCTTC+TGG 0.215955 1_1:-66094771 Msa0037160:CDS
TCTAATACCTTGTTTATATC+TGG 0.230764 1_1:-66088468 Msa0037160:three_prime_UTR
TCAGGAAGCTGGTTTGCTTC+TGG 0.243236 1_1:+66096151 None:intergenic
ATTGATTGTGGTCATTCTAA+TGG 0.258912 1_1:-66096016 Msa0037160:CDS
GTGGCATGTCTTGGTTTGTT+AGG 0.268926 1_1:-66088441 Msa0037160:three_prime_UTR
ATGCAGTGTGTTTGGTGTTT+TGG 0.274926 1_1:-66088178 Msa0037160:three_prime_UTR
CAACCACCTCTTCTTCATAT+TGG 0.283834 1_1:+66088524 None:intergenic
CTGATGGGCTTCTCTTGTTC+AGG 0.299542 1_1:+66096061 None:intergenic
ACAATTCATGAAAAGGAAAA+AGG 0.300936 1_1:+66088307 None:intergenic
AGAACAAGTATCTCAGTTAT+TGG 0.302337 1_1:-66089640 Msa0037160:CDS
TACTACCGCATTCACACTAT+TGG 0.319148 1_1:-66096851 Msa0037160:five_prime_UTR
GAAGCACATGCATCCTTTAC+AGG 0.325831 1_1:+66094774 None:intergenic
CATTTATCTACATTGAAAAC+GGG 0.358022 1_1:-66088358 Msa0037160:three_prime_UTR
TCCTGAAGTTGATTCATTGC+CGG 0.363142 1_1:-66096134 Msa0037160:CDS
AAAATACCGAGTACATGTTT+TGG 0.368034 1_1:+66088206 None:intergenic
GGCTTCTCTTGTTCAGGAGT+TGG 0.369688 1_1:+66096067 None:intergenic
ATCGCTATGCCGGTCACTTC+AGG 0.373308 1_1:-66088603 Msa0037160:CDS
TGCTACAGGATGTGAGTATC+AGG 0.375897 1_1:-66090257 Msa0037160:intron
AAGCTCCCAAGCCAAGTTTC+CGG 0.377031 1_1:+66088241 None:intergenic
TGGCATGTCTTGGTTTGTTA+GGG 0.377791 1_1:-66088440 Msa0037160:three_prime_UTR
GTTGGAGTAGCAGGCGCAAC+AGG 0.381038 1_1:+66096085 None:intergenic
GGTTGCAGCTAAACAACCTT+TGG 0.383471 1_1:-66094811 Msa0037160:intron
AGAGAAATTCCAACAGTTCC+AGG 0.384564 1_1:-66089577 Msa0037160:intron
CCATTTATCTACATTGAAAA+CGG 0.391921 1_1:-66088359 Msa0037160:three_prime_UTR
TTCAAACCTTGATTGCATCT+TGG 0.400861 1_1:+66091550 None:intergenic
ACTATTATTACTCTTGTTCT+CGG 0.407706 1_1:+66088559 None:intergenic
CAGAATAAATGTCACCTTCT+GGG 0.408951 1_1:+66089846 None:intergenic
TCCGGCAATGAATCAACTTC+AGG 0.416327 1_1:+66096133 None:intergenic
TTGCCGGATGGGTTTGTTGA+GGG 0.434934 1_1:-66096118 Msa0037160:CDS
TAAAGGATGCATGTGCTTCT+GGG 0.438833 1_1:-66094770 Msa0037160:CDS
CGTTCTCCTTTAGCTGAGAA+AGG 0.449090 1_1:+66090211 None:intergenic
ACAGTTGAAGCAAAAGTCAT+TGG 0.459008 1_1:-66089742 Msa0037160:intron
AGTAGCAGGCGCAACAGGTT+CGG 0.461107 1_1:+66096090 None:intergenic
ACTCAAGTATCAACAAGTAT+TGG 0.464833 1_1:-66094147 Msa0037160:CDS
ATAAGCTTGAGTCACTATGC+AGG 0.470749 1_1:-66093198 Msa0037160:CDS
ATGTCATACAATTCATGAAA+AGG 0.477709 1_1:+66088300 None:intergenic
TTTACATCATTGCTTCTGGA+TGG 0.479292 1_1:+66095839 None:intergenic
TAAGTTCCAAGATGCAATCA+AGG 0.480936 1_1:-66091556 Msa0037160:intron
TCTGGACTAGTGGCATGTCT+TGG 0.486438 1_1:-66088450 Msa0037160:three_prime_UTR
TGTTCAGGAGTTGGAGTAGC+AGG 0.487921 1_1:+66096076 None:intergenic
CGTTTGCAGCTGACAACTGA+TGG 0.491667 1_1:-66089600 Msa0037160:CDS
CCTCTCAGACTGCTCGGTGG+AGG 0.491915 1_1:-66095906 Msa0037160:intron
TGATTGCCTTTCTCAGCTAA+AGG 0.494939 1_1:-66090217 Msa0037160:CDS
ATGAATCAACTTCAGGAAGC+TGG 0.495951 1_1:+66096140 None:intergenic
ATCCTCCTTGTAATCACTGA+TGG 0.503982 1_1:+66096045 None:intergenic
CGAGCGCTTGAAGAAACAGC+TGG 0.505935 1_1:-66088657 Msa0037160:CDS
TAATGGATTATCAAACGTGC+CGG 0.510915 1_1:-66095999 Msa0037160:CDS
GGTTGCAAACAACTTCTAGA+AGG 0.511261 1_1:-66088506 Msa0037160:three_prime_UTR
AATTACATTTATCTGAACTC+TGG 0.517076 1_1:+66095795 None:intergenic
ACATGAGGAAAGATCTGCTC+AGG 0.520293 1_1:-66089688 Msa0037160:CDS
ATCAATGAAGGAACTCAAGA+AGG 0.523923 1_1:-66088994 Msa0037160:CDS
GAGGATGGTTTCATTGATTG+TGG 0.524391 1_1:-66096028 Msa0037160:CDS
GACAAAAGCACTGCCTGTAA+AGG 0.524835 1_1:-66094787 Msa0037160:CDS
GCGTGCACTTAAATCAGAAA+AGG 0.525607 1_1:-66094186 Msa0037160:CDS
GAAGTTGATTCATTGCCGGA+TGG 0.529940 1_1:-66096130 Msa0037160:CDS
CTCTCAGACTGCTCGGTGGA+GGG 0.530354 1_1:-66095905 Msa0037160:intron
TCCTCTCTGCCTGAAGTGAC+CGG 0.533884 1_1:+66088594 None:intergenic
GTGCCCTCAACAAACCCATC+CGG 0.536588 1_1:+66096115 None:intergenic
TCAGATGGCAAAATCAATGA+AGG 0.543783 1_1:-66089006 Msa0037160:intron
ATTGCCGGATGGGTTTGTTG+AGG 0.550853 1_1:-66096119 Msa0037160:CDS
AAGTTGATTCATTGCCGGAT+GGG 0.555154 1_1:-66096129 Msa0037160:CDS
GTATTGGCTGAAAGAGATGC+AGG 0.555798 1_1:-66094131 Msa0037160:intron
GAAGCCCATCAGTGATTACA+AGG 0.557693 1_1:-66096050 Msa0037160:CDS
TCCTCCTTGTAATCACTGAT+GGG 0.561879 1_1:+66096046 None:intergenic
GCAAACAACTTCTAGAAGGA+AGG 0.562979 1_1:-66088502 Msa0037160:three_prime_UTR
ATCAGTGATTACAAGGAGGA+TGG 0.564958 1_1:-66096043 Msa0037160:CDS
CTTGTTTATATCTGGACTAG+TGG 0.570516 1_1:-66088460 Msa0037160:three_prime_UTR
GCGTCAAAATAAAATGCTGA+TGG 0.573163 1_1:-66093167 Msa0037160:intron
CAACTGAGGGGCAAAACTTG+AGG 0.580596 1_1:-66091593 Msa0037160:CDS
TGCAAACGTGTATCAACTGA+GGG 0.582847 1_1:-66091606 Msa0037160:CDS
TGAGGGGCAAAACTTGAGGA+TGG 0.583482 1_1:-66091589 Msa0037160:CDS
GCTTCTGGATGGTTGAGACT+CGG 0.585832 1_1:+66095850 None:intergenic
AATGGATTATCAAACGTGCC+GGG 0.588211 1_1:-66095998 Msa0037160:intron
TGACTCAAGCTTATCTCTGA+CGG 0.609729 1_1:+66093207 None:intergenic
AAAGAGCAACAACAAGGAGA+AGG 0.611330 1_1:-66095818 Msa0037160:CDS
AATCATGGGGAATACCTAGC+GGG 0.611569 1_1:+66096804 None:intergenic
GACTGTCCAAAACATGTACT+CGG 0.613166 1_1:-66088212 Msa0037160:three_prime_UTR
TGAGCAGCAATATGCCCAGA+AGG 0.617929 1_1:-66089860 Msa0037160:intron
TATCAGGCTCGAAGAACGAA+AGG 0.619128 1_1:-66090241 Msa0037160:CDS
TCGGCTCCAATATGAAGAAG+AGG 0.623702 1_1:-66088530 Msa0037160:exon
CACTAGTCCAGATATAAACA+AGG 0.636125 1_1:+66088461 None:intergenic
CAGTTCACATAGAAGAAACA+AGG 0.636191 1_1:-66096888 Msa0037160:five_prime_UTR
TAAGCTTGAGTCACTATGCA+GGG 0.636629 1_1:-66093197 Msa0037160:CDS
GGATGCATGTGCTTCTGGGA+TGG 0.642184 1_1:-66094766 Msa0037160:CDS
ACTTATAGAGTTAGTTGACG+AGG 0.647388 1_1:-66088928 Msa0037160:intron
ATTTAAACAAGAGATTGAGA+AGG 0.652438 1_1:-66089145 Msa0037160:intron
AAGATCCAATAGTGTGAATG+CGG 0.655159 1_1:+66096846 None:intergenic
GCCGGTCACTTCAGGCAGAG+AGG 0.655548 1_1:-66088595 Msa0037160:CDS
ATGCAAACGTGTATCAACTG+AGG 0.661308 1_1:-66091607 Msa0037160:CDS
GAGTAATAATAGTAACAACT+CGG 0.668165 1_1:-66088549 Msa0037160:CDS
GATGTAAAAGAGCAACAACA+AGG 0.680608 1_1:-66095824 Msa0037160:CDS
TCACCTCTCAGACTGCTCGG+TGG 0.683389 1_1:-66095909 Msa0037160:intron
GCTCCAATATGAAGAAGAGG+TGG 0.684488 1_1:-66088527 Msa0037160:exon
TCGGAAACAGAACTAGCTAG+AGG 0.687895 1_1:+66095869 None:intergenic
ATTTATCTACATTGAAAACG+GGG 0.708886 1_1:-66088357 Msa0037160:three_prime_UTR
GCCCATCAGTGATTACAAGG+AGG 0.736966 1_1:-66096047 Msa0037160:CDS
GCAAACGTGTATCAACTGAG+GGG 0.772676 1_1:-66091605 Msa0037160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG - chr1_1:66090319-66090338 Msa0037160:intron 0.0%
!!! TTATTTTATTTTTTAAAGTG+AGG - chr1_1:66088725-66088744 Msa0037160:intron 10.0%
!! ATATATATATATATATGGTT+CGG - chr1_1:66090324-66090343 Msa0037160:intron 10.0%
!!! TTTTTTTTCTTGTATTAATT+TGG - chr1_1:66091598-66091617 Msa0037160:CDS 10.0%
!!! TTTTTTTCTTGTATTAATTT+GGG - chr1_1:66091599-66091618 Msa0037160:CDS 10.0%
!! AAGAGAATTTAAATAATTAA+TGG + chr1_1:66092489-66092508 None:intergenic 10.0%
!! ATATATTATAGAATAGTAAA+TGG + chr1_1:66096119-66096138 None:intergenic 10.0%
!! CTATTCTATAATATATAAAT+AGG - chr1_1:66096123-66096142 Msa0037160:CDS 10.0%
!!! TTGATTCATTTTTAAAAATA+TGG + chr1_1:66096278-66096297 None:intergenic 10.0%
!!! GATAACTTTAAAAGAAAAAA+AGG + chr1_1:66088229-66088248 None:intergenic 15.0%
!! ATAATCTACTTAATAAAGAA+CGG + chr1_1:66089392-66089411 None:intergenic 15.0%
!! TAATAATAAAAAAAAGACTC+AGG - chr1_1:66090498-66090517 Msa0037160:intron 15.0%
!! AATAATAAAAAAAAGACTCA+GGG - chr1_1:66090499-66090518 Msa0037160:intron 15.0%
!! AAAAATTAGTTACAGATTAA+GGG + chr1_1:66091726-66091745 None:intergenic 15.0%
!! AAAATTAAACACATATACTT+TGG + chr1_1:66092353-66092372 None:intergenic 15.0%
!!! AAAAACTTAAAAACAGATTT+TGG - chr1_1:66093719-66093738 Msa0037160:intron 15.0%
!!! TTAAAAATTTGCTGAAAAAT+GGG + chr1_1:66093940-66093959 None:intergenic 15.0%
!!! TTTAAAAATTTGCTGAAAAA+TGG + chr1_1:66093941-66093960 None:intergenic 15.0%
!!! TTGTTATTGTATATATTGTT+GGG - chr1_1:66094105-66094124 Msa0037160:intron 15.0%
!!! GATGAATTATTTTCTTTTAT+AGG - chr1_1:66094127-66094146 Msa0037160:intron 15.0%
!!! TTTAGATTTTCTTTGTATAT+AGG + chr1_1:66094290-66094309 None:intergenic 15.0%
!! ATATACAAAGAAAATCTAAA+TGG - chr1_1:66094290-66094309 Msa0037160:intron 15.0%
!! TATTACTATTCTTTACAAAT+CGG + chr1_1:66094628-66094647 None:intergenic 15.0%
!! AATATTATACCAAGTATTAT+CGG + chr1_1:66094881-66094900 None:intergenic 15.0%
!! AAAAAGGAAAAAAAGAAAGA+GGG + chr1_1:66088213-66088232 None:intergenic 20.0%
!! AAAAAAGGAAAAAAAGAAAG+AGG + chr1_1:66088214-66088233 None:intergenic 20.0%
!!! TTCTTCCATTTTTAAATTGT+TGG - chr1_1:66088323-66088342 Msa0037160:three_prime_UTR 20.0%
!! TGATACCAACAATTTAAAAA+TGG + chr1_1:66088331-66088350 None:intergenic 20.0%
!! AATGCAAGAGATTAATTAAT+TGG + chr1_1:66088379-66088398 None:intergenic 20.0%
!!! CATTTTTATTTTGTGTGTTT+AGG - chr1_1:66088395-66088414 Msa0037160:three_prime_UTR 20.0%
!!! ATGAAATTTGATAGTAGTTT+AGG - chr1_1:66088559-66088578 Msa0037160:CDS 20.0%
!!! TTTTAAAGTGAGGATTAAAT+TGG - chr1_1:66088735-66088754 Msa0037160:intron 20.0%
!!! ATAAGAGATTTTTGAAATGT+AGG - chr1_1:66088802-66088821 Msa0037160:intron 20.0%
!!! CTTAAAAGCAAGTTTTAATT+TGG - chr1_1:66089294-66089313 Msa0037160:intron 20.0%
!! AATAACATGAGTATGAAAAT+GGG + chr1_1:66089518-66089537 None:intergenic 20.0%
!! AAATAACATGAGTATGAAAA+TGG + chr1_1:66089519-66089538 None:intergenic 20.0%
!! ATCTTATATGATTGAACAAT+TGG - chr1_1:66089868-66089887 Msa0037160:CDS 20.0%
!! CATTTGAAAAAAATAGAGAA+GGG + chr1_1:66089973-66089992 None:intergenic 20.0%
!! ACATTTGAAAAAAATAGAGA+AGG + chr1_1:66089974-66089993 None:intergenic 20.0%
!! GCATAAATTAATATAACTGA+CGG - chr1_1:66090070-66090089 Msa0037160:intron 20.0%
!!! AAAATAGTCTTATCAAATAG+AGG + chr1_1:66090399-66090418 None:intergenic 20.0%
!! ATAATAAAAAAAAGACTCAG+GGG - chr1_1:66090500-66090519 Msa0037160:intron 20.0%
!! ATAGCAATACATTTAAAAAG+AGG + chr1_1:66091192-66091211 None:intergenic 20.0%
!! ACATAGTGTAATCAAATTAT+TGG - chr1_1:66091344-66091363 Msa0037160:intron 20.0%
!! CATAGTGTAATCAAATTATT+GGG - chr1_1:66091345-66091364 Msa0037160:intron 20.0%
!! CAAAAATTAGTTACAGATTA+AGG + chr1_1:66091727-66091746 None:intergenic 20.0%
!! TATAAACTAAACATGAGAAA+TGG + chr1_1:66092182-66092201 None:intergenic 20.0%
!! AAACCATCTTAATTATATCT+CGG - chr1_1:66092560-66092579 Msa0037160:intron 20.0%
!!! CATTTCATTTTTGTTTCAAA+AGG + chr1_1:66092639-66092658 None:intergenic 20.0%
!!! ATAAACTTTTAGCAATTTCT+AGG - chr1_1:66092852-66092871 Msa0037160:intron 20.0%
!!! TTGATTTGTTATGAAAGTTT+TGG - chr1_1:66092978-66092997 Msa0037160:intron 20.0%
!! AAAAATTACAAAAGAGTAAG+TGG + chr1_1:66093699-66093718 None:intergenic 20.0%
!!! TTTCAGCAAATTTTTAAATC+TGG - chr1_1:66093943-66093962 Msa0037160:intron 20.0%
!!! GTTGTTATTGTATATATTGT+TGG - chr1_1:66094104-66094123 Msa0037160:intron 20.0%
!! ATTACTATTCTTTACAAATC+GGG + chr1_1:66094627-66094646 None:intergenic 20.0%
!! TAATTGAAAAATGATTCCAT+GGG + chr1_1:66094665-66094684 None:intergenic 20.0%
!! ATAATTGAAAAATGATTCCA+TGG + chr1_1:66094666-66094685 None:intergenic 20.0%
!!! TCTTCTTAAAAAACTTTTCA+GGG + chr1_1:66094814-66094833 None:intergenic 20.0%
!!! CTCTTTTTAAAAGGAAAAAA+GGG - chr1_1:66094989-66095008 Msa0037160:intron 20.0%
!!! AAATCATGTCGAATTATTTT+AGG + chr1_1:66095056-66095075 None:intergenic 20.0%
!!! TATTTATTAACTTTTGAGAC+TGG - chr1_1:66095196-66095215 Msa0037160:intron 20.0%
!! ATTAAAAATTAAGCAACATG+AGG - chr1_1:66095286-66095305 Msa0037160:intron 20.0%
!! TAGCACATAATATAATAAAG+TGG + chr1_1:66095478-66095497 None:intergenic 20.0%
!!! ACCATTGATTTGTTTAATAA+CGG - chr1_1:66095595-66095614 Msa0037160:intron 20.0%
!! ATATAAATAGGGAGATAAAT+TGG - chr1_1:66096135-66096154 Msa0037160:CDS 20.0%
!!! AATTACCATATTTTGATAGA+CGG + chr1_1:66096215-66096234 None:intergenic 20.0%
! TAACAACAAAATTACAGCTA+CGG + chr1_1:66088467-66088486 None:intergenic 25.0%
!!! AGCTGTAATTTTGTTGTTAT+TGG - chr1_1:66088468-66088487 Msa0037160:three_prime_UTR 25.0%
! CTACTATCAAATTTCATCAA+GGG + chr1_1:66088556-66088575 None:intergenic 25.0%
! ACTACTATCAAATTTCATCA+AGG + chr1_1:66088557-66088576 None:intergenic 25.0%
!!! TTTTTTGTCAAATAACCTAG+TGG + chr1_1:66088673-66088692 None:intergenic 25.0%
! TGACAAAAAAAAATTGTGAC+TGG - chr1_1:66088683-66088702 Msa0037160:intron 25.0%
!!! TAAATTGGAGTTTTTTCTGA+AGG - chr1_1:66088750-66088769 Msa0037160:intron 25.0%
! AATTACATTTATCTGAACTC+TGG + chr1_1:66089197-66089216 None:intergenic 25.0%
! TAAATACGAAGTCTACAAAA+GGG + chr1_1:66089237-66089256 None:intergenic 25.0%
! GAAAGAAGAAAAGTTTACAT+TGG + chr1_1:66089441-66089460 None:intergenic 25.0%
! CTATAAACAAAAGAGTTTCA+TGG + chr1_1:66089619-66089638 None:intergenic 25.0%
! TCTCCATATTGTATTGAATT+AGG - chr1_1:66089656-66089675 Msa0037160:CDS 25.0%
! ATGCCTAATTCAATACAATA+TGG + chr1_1:66089662-66089681 None:intergenic 25.0%
! ATATACATAGTTAGACAAGA+TGG + chr1_1:66089727-66089746 None:intergenic 25.0%
!!! CTCTATTTTTTTCAAATGTG+TGG - chr1_1:66089975-66089994 Msa0037160:intron 25.0%
! TATCTCTTTAGTATCTGATA+AGG - chr1_1:66090133-66090152 Msa0037160:intron 25.0%
! AATAAAATGCGATAGTTGAT+GGG + chr1_1:66090435-66090454 None:intergenic 25.0%
! AAATAAAATGCGATAGTTGA+TGG + chr1_1:66090436-66090455 None:intergenic 25.0%
! TAATAAAAAAAAGACTCAGG+GGG - chr1_1:66090501-66090520 Msa0037160:intron 25.0%
! TTGACAAAATAAAGATTCAG+AGG - chr1_1:66090574-66090593 Msa0037160:intron 25.0%
! TGACAAAATAAAGATTCAGA+GGG - chr1_1:66090575-66090594 Msa0037160:intron 25.0%
!!! ATGTGTTTTGATTTTTTTGC+TGG - chr1_1:66090909-66090928 Msa0037160:intron 25.0%
! GTGAACTTTCTTATTATGAT+AGG - chr1_1:66090941-66090960 Msa0037160:intron 25.0%
! CATATTAACTGTTGTTATGT+TGG - chr1_1:66091165-66091184 Msa0037160:intron 25.0%
! ATTAGTTCATTCTACAGAAA+CGG - chr1_1:66091317-66091336 Msa0037160:intron 25.0%
! GTAATTTGATACTAGGATAT+TGG - chr1_1:66091387-66091406 Msa0037160:intron 25.0%
! AAAATTGTACCATGTTCAAA+TGG + chr1_1:66091581-66091600 None:intergenic 25.0%
!! TTCTTGTATTAATTTGGGTT+AGG - chr1_1:66091604-66091623 Msa0037160:CDS 25.0%
! TATTAGATAATCAGTTTCAG+AGG + chr1_1:66091869-66091888 None:intergenic 25.0%
! TGTTGAATGCCTAAAAAATT+AGG - chr1_1:66091911-66091930 Msa0037160:intron 25.0%
! TCACATAAACACATAAACTA+AGG - chr1_1:66092232-66092251 Msa0037160:intron 25.0%
! CACATAAACACATAAACTAA+GGG - chr1_1:66092233-66092252 Msa0037160:intron 25.0%
! TTTAATGAAATTGCTTATCG+TGG + chr1_1:66092537-66092556 None:intergenic 25.0%
! AACCATCTTAATTATATCTC+GGG - chr1_1:66092561-66092580 Msa0037160:intron 25.0%
!!! TCATTTTTGTTTCAAAAGGA+TGG + chr1_1:66092635-66092654 None:intergenic 25.0%
!!! TGTATGTAATTTTGTTTAGC+TGG - chr1_1:66093035-66093054 Msa0037160:intron 25.0%
! AATAAGAAAAGGAACTCATT+AGG + chr1_1:66093242-66093261 None:intergenic 25.0%
! CACATTCATGTAATAAGAAA+AGG + chr1_1:66093253-66093272 None:intergenic 25.0%
! ACTCTGTTAATGAAAAAACT+AGG - chr1_1:66093332-66093351 Msa0037160:intron 25.0%
!! ATTCATGTTCCATTATTTTC+AGG - chr1_1:66093355-66093374 Msa0037160:intron 25.0%
!! TTTTGAACAAAGTGTACATT+TGG - chr1_1:66093491-66093510 Msa0037160:intron 25.0%
!!! CTTAAAAACAGATTTTGGAA+AGG - chr1_1:66093724-66093743 Msa0037160:intron 25.0%
! ATTCTATGCTCAAAGATTAA+GGG + chr1_1:66093762-66093781 None:intergenic 25.0%
! TATTCTATGCTCAAAGATTA+AGG + chr1_1:66093763-66093782 None:intergenic 25.0%
! CCAAAGAAACATTAATTTCA+AGG + chr1_1:66093798-66093817 None:intergenic 25.0%
! CCTTGAAATTAATGTTTCTT+TGG - chr1_1:66093795-66093814 Msa0037160:intron 25.0%
! AATCAATCTAAATCAAAGAC+AGG - chr1_1:66093867-66093886 Msa0037160:intron 25.0%
! ATCAATCTAAATCAAAGACA+GGG - chr1_1:66093868-66093887 Msa0037160:intron 25.0%
! ATTAGATTCCAATATGTTCA+AGG - chr1_1:66093975-66093994 Msa0037160:intron 25.0%
! GGTTAATATTCCTGAAATAT+AGG - chr1_1:66094213-66094232 Msa0037160:CDS 25.0%
! TAATATTCCTGAAATATAGG+TGG - chr1_1:66094216-66094235 Msa0037160:CDS 25.0%
! CTGTTAGGATATAGAATAAA+CGG - chr1_1:66094388-66094407 Msa0037160:intron 25.0%
! TGTTAGGATATAGAATAAAC+GGG - chr1_1:66094389-66094408 Msa0037160:intron 25.0%
! GGAATATTTGTATAGATAAG+AGG - chr1_1:66094435-66094454 Msa0037160:intron 25.0%
!!! ATAGTAATATCTTTTCTAGC+TGG - chr1_1:66094639-66094658 Msa0037160:intron 25.0%
!! GTCTTCTTAAAAAACTTTTC+AGG + chr1_1:66094815-66094834 None:intergenic 25.0%
!!! TTTTAAAAAGAGCCATTGTA+TGG + chr1_1:66094981-66095000 None:intergenic 25.0%
!! ATACAATGGCTCTTTTTAAA+AGG - chr1_1:66094980-66094999 Msa0037160:intron 25.0%
!!! GCTCTTTTTAAAAGGAAAAA+AGG - chr1_1:66094988-66095007 Msa0037160:intron 25.0%
! ATTCGACATGATTTCAATAT+AGG - chr1_1:66095062-66095081 Msa0037160:intron 25.0%
! ACCGTTATTAAACAAATCAA+TGG + chr1_1:66095599-66095618 None:intergenic 25.0%
!!! TACTTATCCCTATTTTAGAA+TGG - chr1_1:66095667-66095686 Msa0037160:intron 25.0%
! ATTTAAACAAGAGATTGAGA+AGG - chr1_1:66095844-66095863 Msa0037160:CDS 25.0%
!!! ATTTTTGCTTTTCATCCTTA+AGG - chr1_1:66096232-66096251 Msa0037160:intron 25.0%
! ACTATTATTACTCTTGTTCT+CGG + chr1_1:66096433-66096452 None:intergenic 25.0%
! GAGTAATAATAGTAACAACT+CGG - chr1_1:66096440-66096459 Msa0037160:intron 25.0%
!! TCTAATACCTTGTTTATATC+TGG - chr1_1:66096521-66096540 Msa0037160:intron 25.0%
! CCATTTATCTACATTGAAAA+CGG - chr1_1:66096630-66096649 Msa0037160:intron 25.0%
! CATTTATCTACATTGAAAAC+GGG - chr1_1:66096631-66096650 Msa0037160:intron 25.0%
! ATTTATCTACATTGAAAACG+GGG - chr1_1:66096632-66096651 Msa0037160:intron 25.0%
! ACAATTCATGAAAAGGAAAA+AGG + chr1_1:66096685-66096704 None:intergenic 25.0%
! ATGTCATACAATTCATGAAA+AGG + chr1_1:66096692-66096711 None:intergenic 25.0%
AAAGAAAGAGGGATAATCAT+GGG + chr1_1:66088202-66088221 None:intergenic 30.0%
AAAAGAAAGAGGGATAATCA+TGG + chr1_1:66088203-66088222 None:intergenic 30.0%
CAATAACATCTCTCTACAAT+GGG + chr1_1:66088444-66088463 None:intergenic 30.0%
TCTGAAGGAAAGGATTAAAT+TGG - chr1_1:66088765-66088784 Msa0037160:intron 30.0%
ATTGATTGTGGTCATTCTAA+TGG - chr1_1:66088973-66088992 Msa0037160:CDS 30.0%
AAATACGAAGTCTACAAAAG+GGG + chr1_1:66089236-66089255 None:intergenic 30.0%
CTAAATACGAAGTCTACAAA+AGG + chr1_1:66089238-66089257 None:intergenic 30.0%
TTTACATTGGTACAACACAT+TGG + chr1_1:66089428-66089447 None:intergenic 30.0%
CATGAGTAGGAAAATGAATA+AGG + chr1_1:66089463-66089482 None:intergenic 30.0%
! CTTATTCATTTTCCTACTCA+TGG - chr1_1:66089461-66089480 Msa0037160:intron 30.0%
!!! TCCTACTCATGGAATTTTTT+AGG - chr1_1:66089472-66089491 Msa0037160:intron 30.0%
ACCTAAAAAATTCCATGAGT+AGG + chr1_1:66089476-66089495 None:intergenic 30.0%
ATATGGAGAATGTTTGAACT+AGG + chr1_1:66089645-66089664 None:intergenic 30.0%
ATTTGAGGGTCATAACAAAA+GGG + chr1_1:66089685-66089704 None:intergenic 30.0%
AATTTGAGGGTCATAACAAA+AGG + chr1_1:66089686-66089705 None:intergenic 30.0%
GGTTTGAAGAACAAATTTGT+TGG - chr1_1:66089806-66089825 Msa0037160:intron 30.0%
!! GAAGAACAAATTTGTTGGAA+AGG - chr1_1:66089811-66089830 Msa0037160:intron 30.0%
TATGATTGAACAATTGGAGA+CGG - chr1_1:66089874-66089893 Msa0037160:CDS 30.0%
GGAAGGTTGTAAAAGTAAAA+TGG - chr1_1:66089914-66089933 Msa0037160:intron 30.0%
CTGTTAACAGTCATAATTGA+CGG - chr1_1:66090005-66090024 Msa0037160:intron 30.0%
TCTGTTACCATTGTTAATTG+TGG - chr1_1:66090157-66090176 Msa0037160:intron 30.0%
TTGATTAGGTTCTATTGAGT+AGG - chr1_1:66090525-66090544 Msa0037160:intron 30.0%
TGATTAGGTTCTATTGAGTA+GGG - chr1_1:66090526-66090545 Msa0037160:intron 30.0%
TATTGAGTAGGGAATTCATT+CGG - chr1_1:66090537-66090556 Msa0037160:intron 30.0%
AAATAAAGATTCAGAGGGTT+AGG - chr1_1:66090580-66090599 Msa0037160:intron 30.0%
ACAAAATAATGACTCGTAGA+GGG - chr1_1:66090610-66090629 Msa0037160:intron 30.0%
!!! TCTTTTTTGCATTTCTCTGT+TGG - chr1_1:66090661-66090680 Msa0037160:intron 30.0%
!!! AGTTTTTTTCCCCTTTCTTT+TGG - chr1_1:66090692-66090711 Msa0037160:intron 30.0%
! GTCAAACTTCTAATTTTCTC+AGG - chr1_1:66090752-66090771 Msa0037160:intron 30.0%
! TTCTAATTTTCTCAGGAAAC+TGG - chr1_1:66090759-66090778 Msa0037160:intron 30.0%
! TCTAATTTTCTCAGGAAACT+GGG - chr1_1:66090760-66090779 Msa0037160:intron 30.0%
ACTCAAGTATCAACAAGTAT+TGG - chr1_1:66090842-66090861 Msa0037160:intron 30.0%
GAAAAATCAAGAGAAAGTGA+AGG - chr1_1:66090963-66090982 Msa0037160:intron 30.0%
CTGTACACTGATATTTATAG+AGG - chr1_1:66091064-66091083 Msa0037160:intron 30.0%
! GTAATAGAAACTGGTTTCTA+TGG + chr1_1:66091263-66091282 None:intergenic 30.0%
GACTGTAATGTAATAGAAAC+TGG + chr1_1:66091272-66091291 None:intergenic 30.0%
TACCAGTGTAATTTGATACT+AGG - chr1_1:66091380-66091399 Msa0037160:intron 30.0%
ATCCTAGTATCAAATTACAC+TGG + chr1_1:66091385-66091404 None:intergenic 30.0%
ATTTGATACTAGGATATTGG+AGG - chr1_1:66091390-66091409 Msa0037160:intron 30.0%
TTTGATACTAGGATATTGGA+GGG - chr1_1:66091391-66091410 Msa0037160:intron 30.0%
ATTCAAGTGCTCAATTACAA+AGG + chr1_1:66091448-66091467 None:intergenic 30.0%
TTGCATCTTCTTAACTGTAA+TGG - chr1_1:66091467-66091486 Msa0037160:intron 30.0%
TGCATCTTCTTAACTGTAAT+GGG - chr1_1:66091468-66091487 Msa0037160:intron 30.0%
AGAGAAGCAATACATTTAGA+AGG + chr1_1:66091516-66091535 None:intergenic 30.0%
TCTAAATGACCATTTGAACA+TGG - chr1_1:66091569-66091588 Msa0037160:CDS 30.0%
! TGTATTAATTTGGGTTAGGT+TGG - chr1_1:66091608-66091627 Msa0037160:CDS 30.0%
!!! TGTTGTTTTGAGAAACACTT+AGG - chr1_1:66091648-66091667 Msa0037160:intron 30.0%
!!! GTTGTTTTGAGAAACACTTA+GGG - chr1_1:66091649-66091668 Msa0037160:intron 30.0%
!!! TTGTTTTGAGAAACACTTAG+GGG - chr1_1:66091650-66091669 Msa0037160:intron 30.0%
TCTGACTACAAAACCAAATT+TGG - chr1_1:66091945-66091964 Msa0037160:intron 30.0%
CTGACTACAAAACCAAATTT+GGG - chr1_1:66091946-66091965 Msa0037160:intron 30.0%
TGACTACAAAACCAAATTTG+GGG - chr1_1:66091947-66091966 Msa0037160:intron 30.0%
CAAACAAATTCAGATTTCCA+TGG + chr1_1:66092037-66092056 None:intergenic 30.0%
GCTAATTGAAAATTAGTCCT+TGG - chr1_1:66092065-66092084 Msa0037160:intron 30.0%
AATTGAAAATTAGTCCTTGG+TGG - chr1_1:66092068-66092087 Msa0037160:intron 30.0%
ATTGAAAATTAGTCCTTGGT+GGG - chr1_1:66092069-66092088 Msa0037160:intron 30.0%
! TGGTATCTAAATTCTGAAGA+AGG - chr1_1:66092142-66092161 Msa0037160:intron 30.0%
! GGTATCTAAATTCTGAAGAA+GGG - chr1_1:66092143-66092162 Msa0037160:intron 30.0%
GTTTATGTGTTTATGTGAGT+GGG + chr1_1:66092230-66092249 None:intergenic 30.0%
AGTTTATGTGTTTATGTGAG+TGG + chr1_1:66092231-66092250 None:intergenic 30.0%
TTAAACACATATACTTTGGC+AGG + chr1_1:66092349-66092368 None:intergenic 30.0%
ACCATCTTAATTATATCTCG+GGG - chr1_1:66092562-66092581 Msa0037160:intron 30.0%
TGTTAAAACTACCAAACGTT+TGG - chr1_1:66092657-66092676 Msa0037160:intron 30.0%
! TTTCTCAAGAAGTAACCTTT+TGG + chr1_1:66092762-66092781 None:intergenic 30.0%
TACTTCTTGAGAAACCTATT+TGG - chr1_1:66092768-66092787 Msa0037160:intron 30.0%
TCAGACAAAATAATTACCAG+CGG + chr1_1:66092805-66092824 None:intergenic 30.0%
CTGAATAGATGTATTTCAAC+AGG - chr1_1:66092821-66092840 Msa0037160:intron 30.0%
!!! GAAAATCTTTTTGGGATTCT+TGG - chr1_1:66092911-66092930 Msa0037160:intron 30.0%
TCAACAAGAATTTCTCAAAG+AGG + chr1_1:66092962-66092981 None:intergenic 30.0%
AAAAGAGACATTCTTCAAGA+CGG + chr1_1:66093075-66093094 None:intergenic 30.0%
AAAAATACTGTAGCGAGATT+AGG + chr1_1:66093103-66093122 None:intergenic 30.0%
!!! CAGTATTTTTTTTCCCTTTC+TGG - chr1_1:66093113-66093132 Msa0037160:intron 30.0%
TGCATTCTTCCTGAAAATAA+TGG + chr1_1:66093367-66093386 None:intergenic 30.0%
ATGTGTCATAAATTAAAGCG+TGG + chr1_1:66093524-66093543 None:intergenic 30.0%
!! TTTTGGAAAGGATATCAAAC+AGG - chr1_1:66093736-66093755 Msa0037160:intron 30.0%
!!! TTGCTACTTAGTTTTGAGTT+CGG - chr1_1:66093843-66093862 Msa0037160:intron 30.0%
TGTATAGATAAGAGGATAGT+AGG - chr1_1:66094443-66094462 Msa0037160:intron 30.0%
AAATGAAGACATTTAGACTC+GGG + chr1_1:66094585-66094604 None:intergenic 30.0%
CAAATGAAGACATTTAGACT+CGG + chr1_1:66094586-66094605 None:intergenic 30.0%
GTCTTCATTTGGAAAATTGA+TGG - chr1_1:66094595-66094614 Msa0037160:intron 30.0%
! TTTTACCATCCGATAATACT+TGG - chr1_1:66094869-66094888 Msa0037160:intron 30.0%
TTATACCAAGTATTATCGGA+TGG + chr1_1:66094877-66094896 None:intergenic 30.0%
AACAATCATAGGATCCATAA+AGG + chr1_1:66095023-66095042 None:intergenic 30.0%
AGAACAAGTATCTCAGTTAT+TGG - chr1_1:66095349-66095368 Msa0037160:intron 30.0%
TTGTGACTGAAATGAAAAAG+AGG + chr1_1:66095450-66095469 None:intergenic 30.0%
TATGCACACATAACAAATCA+TGG + chr1_1:66095567-66095586 None:intergenic 30.0%
!! CCAAACACCATTCTAAAATA+GGG + chr1_1:66095677-66095696 None:intergenic 30.0%
! TTCTGATTTGAAACATAGTG+TGG - chr1_1:66095716-66095735 Msa0037160:intron 30.0%
! TCTGATTTGAAACATAGTGT+GGG - chr1_1:66095717-66095736 Msa0037160:intron 30.0%
TCAAACATGCATTGAATTTC+AGG - chr1_1:66095787-66095806 Msa0037160:intron 30.0%
TGCTTGAATCATATCTTACT+TGG - chr1_1:66095912-66095931 Msa0037160:intron 30.0%
!! TTTTACCACAATGATGGAAA+AGG + chr1_1:66095962-66095981 None:intergenic 30.0%
! TCTGATTTTTACCACAATGA+TGG + chr1_1:66095968-66095987 None:intergenic 30.0%
TCATTGTGGTAAAAATCAGA+TGG - chr1_1:66095968-66095987 Msa0037160:intron 30.0%
TAAATGGTCAAGAACAAAAC+AGG + chr1_1:66096103-66096122 None:intergenic 30.0%
GTGACTAACATATTGCTTTA+TGG + chr1_1:66096162-66096181 None:intergenic 30.0%
TTTCTCCGTCTATCAAAATA+TGG - chr1_1:66096207-66096226 Msa0037160:intron 30.0%
!! CTTTTCATCCTTAAGGTATT+CGG - chr1_1:66096239-66096258 Msa0037160:intron 30.0%
! CCGTTTTCAATGTAGATAAA+TGG + chr1_1:66096633-66096652 None:intergenic 30.0%
! AAAATACCGAGTACATGTTT+TGG + chr1_1:66096786-66096805 None:intergenic 30.0%
AAGATCCAATAGTGTGAATG+CGG + chr1_1:66088146-66088165 None:intergenic 35.0%
AAGAAAGAGGGATAATCATG+GGG + chr1_1:66088201-66088220 None:intergenic 35.0%
GCAATAACATCTCTCTACAA+TGG + chr1_1:66088445-66088464 None:intergenic 35.0%
!!! TGGAGTTTTTTCTGAAGGAA+AGG - chr1_1:66088755-66088774 Msa0037160:intron 35.0%
!! TAATGGATTATCAAACGTGC+CGG - chr1_1:66088990-66089009 Msa0037160:CDS 35.0%
TTTACATCATTGCTTCTGGA+TGG + chr1_1:66089153-66089172 None:intergenic 35.0%
! CTCTTTTACATCATTGCTTC+TGG + chr1_1:66089157-66089176 None:intergenic 35.0%
GATGTAAAAGAGCAACAACA+AGG - chr1_1:66089165-66089184 Msa0037160:CDS 35.0%
ACAACACTCTATTGTAGAGT+CGG + chr1_1:66089320-66089339 None:intergenic 35.0%
TTGTCTTGATCATTTGCTTG+TGG - chr1_1:66089336-66089355 Msa0037160:intron 35.0%
TGTCTTGATCATTTGCTTGT+GGG - chr1_1:66089337-66089356 Msa0037160:intron 35.0%
AGATGGATAATTCAGAGAGA+GGG + chr1_1:66089710-66089729 None:intergenic 35.0%
AAGATGGATAATTCAGAGAG+AGG + chr1_1:66089711-66089730 None:intergenic 35.0%
TCAGAGCGGAAAAGATTTAT+AGG + chr1_1:66089768-66089787 None:intergenic 35.0%
! ACATTCAATTAGCTTCAGAG+CGG + chr1_1:66089782-66089801 None:intergenic 35.0%
TGAAGCTAATTGAATGTGCA+TGG - chr1_1:66089785-66089804 Msa0037160:intron 35.0%
GTATATGAACGCTAAGCTAA+AGG + chr1_1:66089847-66089866 None:intergenic 35.0%
!! TTTACTTTTACAACCTTCCC+CGG + chr1_1:66089913-66089932 None:intergenic 35.0%
CAAATAGAGGCAAAGTTACT+CGG + chr1_1:66090386-66090405 None:intergenic 35.0%
GACAAAATAATGACTCGTAG+AGG - chr1_1:66090609-66090628 Msa0037160:intron 35.0%
TATGACATGCCAAAAGAAAG+GGG + chr1_1:66090704-66090723 None:intergenic 35.0%
GTATGACATGCCAAAAGAAA+GGG + chr1_1:66090705-66090724 None:intergenic 35.0%
TGTATGACATGCCAAAAGAA+AGG + chr1_1:66090706-66090725 None:intergenic 35.0%
! TTCTTTTGGCATGTCATACA+TGG - chr1_1:66090706-66090725 Msa0037160:intron 35.0%
! CTAATTTTCTCAGGAAACTG+GGG - chr1_1:66090761-66090780 Msa0037160:intron 35.0%
AATCAAGAGAAAGTGAAGGA+AGG - chr1_1:66090967-66090986 Msa0037160:intron 35.0%
TATCAGTGTACAGTAACAAG+TGG + chr1_1:66091057-66091076 None:intergenic 35.0%
GATAACTGAATGTGCTAAGT+CGG - chr1_1:66091138-66091157 Msa0037160:intron 35.0%
! ATGGGATTGTATTGCTCTTT+TGG - chr1_1:66091486-66091505 Msa0037160:intron 35.0%
GCGTCAAAATAAAATGCTGA+TGG - chr1_1:66091822-66091841 Msa0037160:intron 35.0%
GAATGCCTAAAAAATTAGGC+AGG - chr1_1:66091915-66091934 Msa0037160:intron 35.0%
!!! AACCTCCTGCCTAATTTTTT+AGG + chr1_1:66091923-66091942 None:intergenic 35.0%
CAAATTCAGATTTCCATGGA+TGG + chr1_1:66092033-66092052 None:intergenic 35.0%
ACATATACTTTGGCAGGATA+GGG + chr1_1:66092343-66092362 None:intergenic 35.0%
ACCCCGAGATATAATTAAGA+TGG + chr1_1:66092566-66092585 None:intergenic 35.0%
ATTATATCTCGGGGTATAGT+TGG - chr1_1:66092571-66092590 Msa0037160:intron 35.0%
TTATATCTCGGGGTATAGTT+GGG - chr1_1:66092572-66092591 Msa0037160:intron 35.0%
AAACTACCAAACGTTTGGAA+TGG - chr1_1:66092662-66092681 Msa0037160:intron 35.0%
AGTTGTGCAAATATGATGTC+AGG + chr1_1:66092709-66092728 None:intergenic 35.0%
! AAGTAACCTTTTGGATGATC+AGG + chr1_1:66092753-66092772 None:intergenic 35.0%
CAGACAAAATAATTACCAGC+GGG + chr1_1:66092804-66092823 None:intergenic 35.0%
!! TCTCCTCTGGAAAATCTTTT+TGG - chr1_1:66092902-66092921 Msa0037160:intron 35.0%
!! CTCCTCTGGAAAATCTTTTT+GGG - chr1_1:66092903-66092922 Msa0037160:intron 35.0%
! ATCCCAAAAAGATTTTCCAG+AGG + chr1_1:66092908-66092927 None:intergenic 35.0%
TGGGATTCTTGGAAGTAATT+TGG - chr1_1:66092922-66092941 Msa0037160:intron 35.0%
CAAGAATTTCTCAAAGAGGA+GGG + chr1_1:66092958-66092977 None:intergenic 35.0%
ACAAGAATTTCTCAAAGAGG+AGG + chr1_1:66092959-66092978 None:intergenic 35.0%
GATAAAGAGGAGATACAACA+TGG + chr1_1:66093220-66093239 None:intergenic 35.0%
AGGAACTCATTAGGATAAAG+AGG + chr1_1:66093233-66093252 None:intergenic 35.0%
TAAGTTCCAAGATGCAATCA+AGG - chr1_1:66093433-66093452 Msa0037160:intron 35.0%
TTCAAACCTTGATTGCATCT+TGG + chr1_1:66093442-66093461 None:intergenic 35.0%
TACAAAAGAGTAAGTGGTGT+TGG + chr1_1:66093693-66093712 None:intergenic 35.0%
TTTGAGCATAGAATAGCAGA+TGG - chr1_1:66093768-66093787 Msa0037160:intron 35.0%
TTGAGCATAGAATAGCAGAT+GGG - chr1_1:66093769-66093788 Msa0037160:intron 35.0%
GAAAAATGGGTGTGCAAAAT+AGG + chr1_1:66093927-66093946 None:intergenic 35.0%
TCCAATATGTTCAAGGATAG+AGG - chr1_1:66093982-66094001 Msa0037160:intron 35.0%
TCCTCTATCCTTGAACATAT+TGG + chr1_1:66093986-66094005 None:intergenic 35.0%
AATTACTGCTTGATCTTTCG+CGG + chr1_1:66094020-66094039 None:intergenic 35.0%
TTAGCATCTATTCAATGCTC+TGG - chr1_1:66094179-66094198 Msa0037160:CDS 35.0%
AATGCTCTGGCAAATTCTTT+GGG - chr1_1:66094192-66094211 Msa0037160:CDS 35.0%
AAGCAAGTGATACTACTGTT+AGG - chr1_1:66094373-66094392 Msa0037160:intron 35.0%
TTCGAGTAGTTAGTTAGTAG+AGG - chr1_1:66094414-66094433 Msa0037160:intron 35.0%
ATAAGAGGATAGTAGGATAG+AGG - chr1_1:66094450-66094469 Msa0037160:intron 35.0%
TAAGAGGATAGTAGGATAGA+GGG - chr1_1:66094451-66094470 Msa0037160:intron 35.0%
CGAGTCTAAATGTCTTCATT+TGG - chr1_1:66094584-66094603 Msa0037160:intron 35.0%
!! TAGCAATGGCAATTGCTTTT+TGG + chr1_1:66094703-66094722 None:intergenic 35.0%
TAGCAAAGAGAAGTTAGCAA+TGG + chr1_1:66094717-66094736 None:intergenic 35.0%
! TGTTTTACTGCACCATACAA+TGG - chr1_1:66094966-66094985 Msa0037160:intron 35.0%
GCTCAACAAGAAACAATCAT+AGG + chr1_1:66095034-66095053 None:intergenic 35.0%
CAGAATAAATGTCACCTTCT+GGG + chr1_1:66095146-66095165 None:intergenic 35.0%
ACAGAATAAATGTCACCTTC+TGG + chr1_1:66095147-66095166 None:intergenic 35.0%
ACAGTTGAAGCAAAAGTCAT+TGG - chr1_1:66095247-66095266 Msa0037160:intron 35.0%
AAGTGAATTGTTCACTTCAG+TGG - chr1_1:66095643-66095662 Msa0037160:intron 35.0%
!!! CCCTATTTTAGAATGGTGTT+TGG - chr1_1:66095674-66095693 Msa0037160:intron 35.0%
!! GCCAAACACCATTCTAAAAT+AGG + chr1_1:66095678-66095697 None:intergenic 35.0%
TCAGATGGCAAAATCAATGA+AGG - chr1_1:66095983-66096002 Msa0037160:intron 35.0%
ATCAATGAAGGAACTCAAGA+AGG - chr1_1:66095995-66096014 Msa0037160:intron 35.0%
ACTTATAGAGTTAGTTGACG+AGG - chr1_1:66096061-66096080 Msa0037160:CDS 35.0%
AAAAACTTGAATCGCTATGC+CGG - chr1_1:66096376-66096395 Msa0037160:intron 35.0%
CACTAGTCCAGATATAAACA+AGG + chr1_1:66096531-66096550 None:intergenic 35.0%
! CTTGTTTATATCTGGACTAG+TGG - chr1_1:66096529-66096548 Msa0037160:intron 35.0%
TACTACCGCATTCACACTAT+TGG - chr1_1:66088138-66088157 Msa0037160:three_prime_UTR 40.0%
!! TTCTTTTGATTCTTCCCGCT+AGG - chr1_1:66088171-66088190 Msa0037160:three_prime_UTR 40.0%
TAATCATGGGGAATACCTAG+CGG + chr1_1:66088189-66088208 None:intergenic 40.0%
CGTGCAACAATTTGTGATCT+GGG + chr1_1:66088275-66088294 None:intergenic 40.0%
ACGTGCAACAATTTGTGATC+TGG + chr1_1:66088276-66088295 None:intergenic 40.0%
CTATTTGCACTGCACTCTTT+CGG - chr1_1:66088299-66088318 Msa0037160:three_prime_UTR 40.0%
CTTTGCTTACAACAGCAAGA+AGG - chr1_1:66088602-66088621 Msa0037160:CDS 40.0%
ATGAATCAACTTCAGGAAGC+TGG + chr1_1:66088852-66088871 None:intergenic 40.0%
! TCCTGAAGTTGATTCATTGC+CGG - chr1_1:66088855-66088874 Msa0037160:intron 40.0%
! AAGTTGATTCATTGCCGGAT+GGG - chr1_1:66088860-66088879 Msa0037160:intron 40.0%
TCCTCCTTGTAATCACTGAT+GGG + chr1_1:66088946-66088965 None:intergenic 40.0%
ATCCTCCTTGTAATCACTGA+TGG + chr1_1:66088947-66088966 None:intergenic 40.0%
ATCAGTGATTACAAGGAGGA+TGG - chr1_1:66088946-66088965 Msa0037160:CDS 40.0%
! GAGGATGGTTTCATTGATTG+TGG - chr1_1:66088961-66088980 Msa0037160:CDS 40.0%
!! AATGGATTATCAAACGTGCC+GGG - chr1_1:66088991-66089010 Msa0037160:CDS 40.0%
GTTCACTAATTTCGCTTACC+CGG + chr1_1:66089012-66089031 None:intergenic 40.0%
AAAGAGCAACAACAAGGAGA+AGG - chr1_1:66089171-66089190 Msa0037160:CDS 40.0%
GTCTTGATCATTTGCTTGTG+GGG - chr1_1:66089338-66089357 Msa0037160:intron 40.0%
TCTTGATCATTTGCTTGTGG+GGG - chr1_1:66089339-66089358 Msa0037160:intron 40.0%
!!! TGGAATTTTTTAGGTGCCCT+TGG - chr1_1:66089481-66089500 Msa0037160:intron 40.0%
!!! GGAATTTTTTAGGTGCCCTT+GGG - chr1_1:66089482-66089501 Msa0037160:intron 40.0%
ATGTGTGCATGTCTACTTTC+TGG - chr1_1:66089579-66089598 Msa0037160:CDS 40.0%
TCAGAGAGAGGGTAATTTGA+GGG + chr1_1:66089699-66089718 None:intergenic 40.0%
TTCAGAGAGAGGGTAATTTG+AGG + chr1_1:66089700-66089719 None:intergenic 40.0%
!! TTACTTTTACAACCTTCCCC+GGG + chr1_1:66089912-66089931 None:intergenic 40.0%
GCTGCAACCACAATTAACAA+TGG + chr1_1:66090167-66090186 None:intergenic 40.0%
TAAAGGATGCATGTGCTTCT+GGG - chr1_1:66090219-66090238 Msa0037160:CDS 40.0%
CAATGCATGCAGAGATATAC+AGG + chr1_1:66090295-66090314 None:intergenic 40.0%
CTGTATATCTCTGCATGCAT+TGG - chr1_1:66090293-66090312 Msa0037160:intron 40.0%
TTTGTTCTCTGCCTTTCTCT+CGG - chr1_1:66090355-66090374 Msa0037160:intron 40.0%
AGTAGGGAATTCATTCGGAA+GGG - chr1_1:66090542-66090561 Msa0037160:intron 40.0%
GCGTGCACTTAAATCAGAAA+AGG - chr1_1:66090803-66090822 Msa0037160:intron 40.0%
!! AGTGAAGGAAGGTATTTGAG+AGG - chr1_1:66090978-66090997 Msa0037160:intron 40.0%
TGTTATAAACCGATGTGAGC+AGG + chr1_1:66091117-66091136 None:intergenic 40.0%
TGAGAAACACTTAGGGGAAA+TGG - chr1_1:66091656-66091675 Msa0037160:intron 40.0%
TGACGGCAAAAGCTACAAAA+AGG + chr1_1:66091768-66091787 None:intergenic 40.0%
TGACTCAAGCTTATCTCTGA+CGG + chr1_1:66091785-66091804 None:intergenic 40.0%
ATAAGCTTGAGTCACTATGC+AGG - chr1_1:66091791-66091810 Msa0037160:intron 40.0%
TAAGCTTGAGTCACTATGCA+GGG - chr1_1:66091792-66091811 Msa0037160:intron 40.0%
TGCCTAAAAAATTAGGCAGG+AGG - chr1_1:66091918-66091937 Msa0037160:intron 40.0%
! AGTCAGATTAGCCCCAAATT+TGG + chr1_1:66091961-66091980 None:intergenic 40.0%
! AAAATTAGTCCTTGGTGGGT+TGG - chr1_1:66092073-66092092 Msa0037160:intron 40.0%
!! AAATTAGTCCTTGGTGGGTT+GGG - chr1_1:66092074-66092093 Msa0037160:intron 40.0%
ACTAAACATGAGAAATGGCC+AGG + chr1_1:66092177-66092196 None:intergenic 40.0%
!!! TGTTAGTTTTGCACTAGAGG+TGG + chr1_1:66092206-66092225 None:intergenic 40.0%
!!! GGATGTTAGTTTTGCACTAG+AGG + chr1_1:66092209-66092228 None:intergenic 40.0%
CACATATACTTTGGCAGGAT+AGG + chr1_1:66092344-66092363 None:intergenic 40.0%
CACCAAAGATATGGAATGGA+GGG + chr1_1:66092392-66092411 None:intergenic 40.0%
ACACCACCAAAGATATGGAA+TGG + chr1_1:66092396-66092415 None:intergenic 40.0%
!! TCCATATCTTTGGTGGTGTA+AGG - chr1_1:66092397-66092416 Msa0037160:intron 40.0%
ACCTTACACCACCAAAGATA+TGG + chr1_1:66092401-66092420 None:intergenic 40.0%
! TACCAAACGTTTGGAATGGA+GGG - chr1_1:66092666-66092685 Msa0037160:intron 40.0%
CACTTTCCTGATCATCCAAA+AGG - chr1_1:66092744-66092763 Msa0037160:intron 40.0%
AAATAATTACCAGCGGGCAT+TGG + chr1_1:66092798-66092817 None:intergenic 40.0%
TGGTTGTTGCTACTGATATG+TGG - chr1_1:66093155-66093174 Msa0037160:intron 40.0%
ACATGAATGTGACTTCTACC+TGG - chr1_1:66093262-66093281 Msa0037160:intron 40.0%
AAGAATCTGATCACACTACC+AGG + chr1_1:66093283-66093302 None:intergenic 40.0%
ATGCAAACGTGTATCAACTG+AGG - chr1_1:66093382-66093401 Msa0037160:intron 40.0%
TGCAAACGTGTATCAACTGA+GGG - chr1_1:66093383-66093402 Msa0037160:intron 40.0%
CTAAACTAGCACACCCAAAT+TGG - chr1_1:66093611-66093630 Msa0037160:intron 40.0%
! ATTCTCTCTGGTGCCAATTT+GGG + chr1_1:66093627-66093646 None:intergenic 40.0%
ATTACTGCTTGATCTTTCGC+GGG + chr1_1:66094019-66094038 None:intergenic 40.0%
CAATGCTCTGGCAAATTCTT+TGG - chr1_1:66094191-66094210 Msa0037160:CDS 40.0%
ATTCCTGAAATATAGGTGGC+TGG - chr1_1:66094220-66094239 Msa0037160:intron 40.0%
TTCCTGAAATATAGGTGGCT+GGG - chr1_1:66094221-66094240 Msa0037160:intron 40.0%
TCTAAATGGTGCCTAGTTGA+TGG - chr1_1:66094304-66094323 Msa0037160:intron 40.0%
TTGATGGAAACTGGTAGGAA+TGG - chr1_1:66094320-66094339 Msa0037160:intron 40.0%
GAAATAGAGAGATCCACCAA+GGG + chr1_1:66094549-66094568 None:intergenic 40.0%
AGAAATAGAGAGATCCACCA+AGG + chr1_1:66094550-66094569 None:intergenic 40.0%
TGCTAACTTCTCTTTGCTAC+AGG - chr1_1:66094718-66094737 Msa0037160:intron 40.0%
TGATTGCCTTTCTCAGCTAA+AGG - chr1_1:66094772-66094791 Msa0037160:CDS 40.0%
AAAGGGAACACGTTCCTTTA+TGG - chr1_1:66095006-66095025 Msa0037160:intron 40.0%
AGAGAAATTCCAACAGTTCC+AGG - chr1_1:66095412-66095431 Msa0037160:intron 40.0%
AAAAAACCACCTGGAACTGT+TGG + chr1_1:66095424-66095443 None:intergenic 40.0%
AAGAGGACAAAAAAACCACC+TGG + chr1_1:66095433-66095452 None:intergenic 40.0%
!! AAATCAGAACCAGAAGTGCT+AGG + chr1_1:66095705-66095724 None:intergenic 40.0%
CAATGAGACCGAATACCTTA+AGG + chr1_1:66096250-66096269 None:intergenic 40.0%
! TAAGGTATTCGGTCTCATTG+CGG - chr1_1:66096250-66096269 Msa0037160:intron 40.0%
CAACCACCTCTTCTTCATAT+TGG + chr1_1:66096468-66096487 None:intergenic 40.0%
GGTTGCAAACAACTTCTAGA+AGG - chr1_1:66096483-66096502 Msa0037160:intron 40.0%
! GCAAACAACTTCTAGAAGGA+AGG - chr1_1:66096487-66096506 Msa0037160:intron 40.0%
!! TGGCATGTCTTGGTTTGTTA+GGG - chr1_1:66096549-66096568 Msa0037160:intron 40.0%
!! CATTGCTTTTGTGCAAACTG+AGG + chr1_1:66096715-66096734 None:intergenic 40.0%
GACTGTCCAAAACATGTACT+CGG - chr1_1:66096777-66096796 Msa0037160:intron 40.0%
! TTTTGCGTATGCAGTGTGTT+TGG - chr1_1:66096803-66096822 Msa0037160:intron 40.0%
!!! ATGCAGTGTGTTTGGTGTTT+TGG - chr1_1:66096811-66096830 Msa0037160:intron 40.0%
AATCATGGGGAATACCTAGC+GGG + chr1_1:66088188-66088207 None:intergenic 45.0%
AACAGCAAGAAGGTAGCTGT+AGG - chr1_1:66088612-66088631 Msa0037160:CDS 45.0%
ACAGCAAGAAGGTAGCTGTA+GGG - chr1_1:66088613-66088632 Msa0037160:CDS 45.0%
AGTGGCGAGAATAGAATTGC+AGG + chr1_1:66088655-66088674 None:intergenic 45.0%
GCAATTCTATTCTCGCCACT+AGG - chr1_1:66088655-66088674 Msa0037160:CDS 45.0%
TCCGGCAATGAATCAACTTC+AGG + chr1_1:66088859-66088878 None:intergenic 45.0%
! GAAGTTGATTCATTGCCGGA+TGG - chr1_1:66088859-66088878 Msa0037160:intron 45.0%
GAAGCCCATCAGTGATTACA+AGG - chr1_1:66088939-66088958 Msa0037160:CDS 45.0%
! TTTTCACCTCTCAGACTGCT+CGG - chr1_1:66089077-66089096 Msa0037160:intron 45.0%
TCGGAAACAGAACTAGCTAG+AGG + chr1_1:66089123-66089142 None:intergenic 45.0%
TAGACATGCACACATCAGCA+AGG + chr1_1:66089574-66089593 None:intergenic 45.0%
! TACTTTTACAACCTTCCCCG+GGG + chr1_1:66089911-66089930 None:intergenic 45.0%
GGTTGCAGCTAAACAACCTT+TGG - chr1_1:66090178-66090197 Msa0037160:intron 45.0%
!! GACAAAAGCACTGCCTGTAA+AGG - chr1_1:66090202-66090221 Msa0037160:intron 45.0%
GAAGCACATGCATCCTTTAC+AGG + chr1_1:66090218-66090237 None:intergenic 45.0%
GTAAAGGATGCATGTGCTTC+TGG - chr1_1:66090218-66090237 Msa0037160:CDS 45.0%
AAGACTCAGGGGGTTTGATT+AGG - chr1_1:66090511-66090530 Msa0037160:intron 45.0%
GAGTAGGGAATTCATTCGGA+AGG - chr1_1:66090541-66090560 Msa0037160:intron 45.0%
TGTCATACATGGCTACGTTC+AGG - chr1_1:66090717-66090736 Msa0037160:intron 45.0%
GAAACTGGGGAAAAACGCAA+GGG - chr1_1:66090774-66090793 Msa0037160:intron 45.0%
!! GTATTGGCTGAAAGAGATGC+AGG - chr1_1:66090858-66090877 Msa0037160:intron 45.0%
CTAGAAGATCCTGCTCACAT+CGG - chr1_1:66091105-66091124 Msa0037160:intron 45.0%
CGAAGTGATTTCGCTTGTAG+TGG - chr1_1:66091982-66092001 Msa0037160:intron 45.0%
!!! CGGGTTTTAGTTTCCATCCA+TGG - chr1_1:66092017-66092036 Msa0037160:intron 45.0%
TGTACACAAGTGCCTCATCA+AGG + chr1_1:66092115-66092134 None:intergenic 45.0%
ATGGAGGGAGTTGTTTAGGA+GGG + chr1_1:66092377-66092396 None:intergenic 45.0%
AATGGAGGGAGTTGTTTAGG+AGG + chr1_1:66092378-66092397 None:intergenic 45.0%
TGGAATGGAGGGAGTTGTTT+AGG + chr1_1:66092381-66092400 None:intergenic 45.0%
CTCCCTCCATTCCATATCTT+TGG - chr1_1:66092387-66092406 Msa0037160:intron 45.0%
CCACCAAAGATATGGAATGG+AGG + chr1_1:66092393-66092412 None:intergenic 45.0%
CCTCCATTCCATATCTTTGG+TGG - chr1_1:66092390-66092409 Msa0037160:intron 45.0%
GGGGTATAGTTGGGAAACAA+AGG - chr1_1:66092581-66092600 Msa0037160:intron 45.0%
! CTACCAAACGTTTGGAATGG+AGG - chr1_1:66092665-66092684 Msa0037160:intron 45.0%
TAGGCCTCACATTTGCATTC+AGG - chr1_1:66092871-66092890 Msa0037160:intron 45.0%
AGGCCTCACATTTGCATTCA+GGG - chr1_1:66092872-66092891 Msa0037160:intron 45.0%
TTGCCCTGAATGCAAATGTG+AGG + chr1_1:66092878-66092897 None:intergenic 45.0%
GGACATGAAAGAGCCAGAAA+GGG + chr1_1:66093129-66093148 None:intergenic 45.0%
AGGACATGAAAGAGCCAGAA+AGG + chr1_1:66093130-66093149 None:intergenic 45.0%
GCTCTTTCATGTCCTAGTCA+TGG - chr1_1:66093135-66093154 Msa0037160:intron 45.0%
CAGTAGCAACAACCATGACT+AGG + chr1_1:66093150-66093169 None:intergenic 45.0%
GCAAACGTGTATCAACTGAG+GGG - chr1_1:66093384-66093403 Msa0037160:intron 45.0%
! GATTCTCTCTGGTGCCAATT+TGG + chr1_1:66093628-66093647 None:intergenic 45.0%
ACCAGAGAGAATCGAACCTA+AGG - chr1_1:66093635-66093654 Msa0037160:intron 45.0%
!! AAGAGTAAGTGGTGTTGGCT+TGG + chr1_1:66093688-66093707 None:intergenic 45.0%
AAGAGTAGAGATGTCCATCC+AGG + chr1_1:66093902-66093921 None:intergenic 45.0%
TTAACCCACACCCACTTAGT+GGG - chr1_1:66094068-66094087 Msa0037160:intron 45.0%
TTATCCCACTAAGTGGGTGT+GGG + chr1_1:66094075-66094094 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr1_1:66094081-66094100 None:intergenic 45.0%
! ACAAGCCTTATCCCACTAAG+TGG + chr1_1:66094082-66094101 None:intergenic 45.0%
AACCCAGCCACCTATATTTC+AGG + chr1_1:66094226-66094245 None:intergenic 45.0%
CCTACCAGTTTCCATCAACT+AGG + chr1_1:66094318-66094337 None:intergenic 45.0%
!! CCTAGTTGATGGAAACTGGT+AGG - chr1_1:66094315-66094334 Msa0037160:intron 45.0%
! CAGTGACTCTTTTGCAGAAG+AGG - chr1_1:66094520-66094539 Msa0037160:intron 45.0%
TTTGCAGAAGAGGAAACCCT+TGG - chr1_1:66094530-66094549 Msa0037160:intron 45.0%
!!! TATCTTTTCTAGCTGGCCCA+TGG - chr1_1:66094646-66094665 Msa0037160:intron 45.0%
TGCTACAGGATGTGAGTATC+AGG - chr1_1:66094732-66094751 Msa0037160:intron 45.0%
TATCAGGCTCGAAGAACGAA+AGG - chr1_1:66094748-66094767 Msa0037160:CDS 45.0%
CGTTCTCCTTTAGCTGAGAA+AGG + chr1_1:66094781-66094800 None:intergenic 45.0%
ACATGAGGAAAGATCTGCTC+AGG - chr1_1:66095301-66095320 Msa0037160:intron 45.0%
GAAATTCCAACAGTTCCAGG+TGG - chr1_1:66095415-66095434 Msa0037160:intron 45.0%
! GTCGTCCTTTTCCATCATTG+TGG - chr1_1:66095954-66095973 Msa0037160:intron 45.0%
TCGGCTCCAATATGAAGAAG+AGG - chr1_1:66096459-66096478 Msa0037160:intron 45.0%
GCTCCAATATGAAGAAGAGG+TGG - chr1_1:66096462-66096481 Msa0037160:intron 45.0%
!! GTGGCATGTCTTGGTTTGTT+AGG - chr1_1:66096548-66096567 Msa0037160:intron 45.0%
! ATTTTGCCGGAAACTTGGCT+TGG - chr1_1:66096742-66096761 Msa0037160:intron 45.0%
! TTTTGCCGGAAACTTGGCTT+GGG - chr1_1:66096743-66096762 Msa0037160:intron 45.0%
!!! CAGTGTGTTTGGTGTTTTGG+AGG - chr1_1:66096814-66096833 Msa0037160:intron 45.0%
!! TTAAAAAATAAAATAAAATC+AGG + chr1_1:66088721-66088740 None:intergenic 5.0%
!! AAAATTATTATTAATTAAAG+TGG + chr1_1:66089949-66089968 None:intergenic 5.0%
!! TTTAAAAAAATGTAATATTT+AGG + chr1_1:66095884-66095903 None:intergenic 5.0%
!! TATTCTATAATATATAAATA+GGG - chr1_1:66096124-66096143 Msa0037160:CDS 5.0%
!! TCAGGAAGCTGGTTTGCTTC+TGG + chr1_1:66088841-66088860 None:intergenic 50.0%
!! ATTGCCGGATGGGTTTGTTG+AGG - chr1_1:66088870-66088889 Msa0037160:intron 50.0%
!! TTGCCGGATGGGTTTGTTGA+GGG - chr1_1:66088871-66088890 Msa0037160:intron 50.0%
TGTTCAGGAGTTGGAGTAGC+AGG + chr1_1:66088916-66088935 None:intergenic 50.0%
GGCTTCTCTTGTTCAGGAGT+TGG + chr1_1:66088925-66088944 None:intergenic 50.0%
!! CTGATGGGCTTCTCTTGTTC+AGG + chr1_1:66088931-66088950 None:intergenic 50.0%
GCCCATCAGTGATTACAAGG+AGG - chr1_1:66088942-66088961 Msa0037160:CDS 50.0%
GCTTCTGGATGGTTGAGACT+CGG + chr1_1:66089142-66089161 None:intergenic 50.0%
!! CAAAAGGGGCATCGATGGTT+AGG + chr1_1:66089222-66089241 None:intergenic 50.0%
!! GTCTACAAAAGGGGCATCGA+TGG + chr1_1:66089227-66089246 None:intergenic 50.0%
ATGGGACCTATTGCACCCAA+GGG + chr1_1:66089500-66089519 None:intergenic 50.0%
AATGGGACCTATTGCACCCA+AGG + chr1_1:66089501-66089520 None:intergenic 50.0%
! ACTTTTACAACCTTCCCCGG+GGG + chr1_1:66089910-66089929 None:intergenic 50.0%
! GGCAGTGCTTTTGTCTCCAA+AGG + chr1_1:66090197-66090216 None:intergenic 50.0%
GGAAACTGGGGAAAAACGCA+AGG - chr1_1:66090773-66090792 Msa0037160:intron 50.0%
TGGCTGAAAGAGATGCAGGT+TGG - chr1_1:66090862-66090881 Msa0037160:intron 50.0%
! TTCGCTTGTAGTGGAACACC+TGG - chr1_1:66091991-66092010 Msa0037160:intron 50.0%
! TGTAGTGGAACACCTGGTCA+CGG - chr1_1:66091997-66092016 Msa0037160:intron 50.0%
GGAAACTAAAACCCGTGACC+AGG + chr1_1:66092012-66092031 None:intergenic 50.0%
AGATGAAACCCAACCCACCA+AGG + chr1_1:66092085-66092104 None:intergenic 50.0%
CATCTTGCACTGCCTTGATG+AGG - chr1_1:66092100-66092119 Msa0037160:intron 50.0%
TGAAGAAGGGTAGCATGTCC+TGG - chr1_1:66092156-66092175 Msa0037160:intron 50.0%
TGGAGGGAGTTGTTTAGGAG+GGG + chr1_1:66092376-66092395 None:intergenic 50.0%
CTCCCTCCATTCCAAACGTT+TGG + chr1_1:66092671-66092690 None:intergenic 50.0%
!! CGGGCATTGGACTTCCAAAT+AGG + chr1_1:66092785-66092804 None:intergenic 50.0%
TCAGGGCAATTACTCTCCTC+TGG - chr1_1:66092889-66092908 Msa0037160:intron 50.0%
CAACTGAGGGGCAAAACTTG+AGG - chr1_1:66093396-66093415 Msa0037160:intron 50.0%
TGAGGGGCAAAACTTGAGGA+TGG - chr1_1:66093400-66093419 Msa0037160:intron 50.0%
GCCTTAGGTTCGATTCTCTC+TGG + chr1_1:66093639-66093658 None:intergenic 50.0%
GAATCGAACCTAAGGCCTTG+AGG - chr1_1:66093643-66093662 Msa0037160:intron 50.0%
! TTGGAGTTTGCTCCTCCTCA+AGG + chr1_1:66093661-66093680 None:intergenic 50.0%
TTGAGGAGGAGCAAACTCCA+AGG - chr1_1:66093660-66093679 Msa0037160:intron 50.0%
AAAGACAGGGTGAGCATTCC+TGG - chr1_1:66093881-66093900 Msa0037160:intron 50.0%
GTTAACCCACACCCACTTAG+TGG - chr1_1:66094067-66094086 Msa0037160:intron 50.0%
CTTATCCCACTAAGTGGGTG+TGG + chr1_1:66094076-66094095 None:intergenic 50.0%
CACACCCACTTAGTGGGATA+AGG - chr1_1:66094074-66094093 Msa0037160:intron 50.0%
!! GGTGCCTAGTTGATGGAAAC+TGG - chr1_1:66094311-66094330 Msa0037160:intron 50.0%
TGAGCAGCAATATGCCCAGA+AGG - chr1_1:66095129-66095148 Msa0037160:intron 50.0%
CGTTTGCAGCTGACAACTGA+TGG - chr1_1:66095389-66095408 Msa0037160:intron 50.0%
TTGGCTGATCCTAGCACTTC+TGG - chr1_1:66095693-66095712 Msa0037160:intron 50.0%
!! TCTGGACTAGTGGCATGTCT+TGG - chr1_1:66096539-66096558 Msa0037160:intron 50.0%
! GCAATGAGACGCGATTTTGC+CGG - chr1_1:66096729-66096748 Msa0037160:intron 50.0%
! ACGCGATTTTGCCGGAAACT+TGG - chr1_1:66096737-66096756 Msa0037160:intron 50.0%
AAGCTCCCAAGCCAAGTTTC+CGG + chr1_1:66096751-66096770 None:intergenic 50.0%
GTGCCCTCAACAAACCCATC+CGG + chr1_1:66088877-66088896 None:intergenic 55.0%
AGTAGCAGGCGCAACAGGTT+CGG + chr1_1:66088902-66088921 None:intergenic 55.0%
TAGGTGCCCTTGGGTGCAAT+AGG - chr1_1:66089491-66089510 Msa0037160:intron 55.0%
AGACGGAGTTCAAATCCCCC+CGG - chr1_1:66089891-66089910 Msa0037160:CDS 55.0%
! CTTTTACAACCTTCCCCGGG+GGG + chr1_1:66089909-66089928 None:intergenic 55.0%
! GGATGCATGTGCTTCTGGGA+TGG - chr1_1:66090223-66090242 Msa0037160:CDS 55.0%
ACTCGGAGAGTCCGAGAGAA+AGG + chr1_1:66090369-66090388 None:intergenic 55.0%
! GTAGTGGAACACCTGGTCAC+GGG - chr1_1:66091998-66092017 Msa0037160:intron 55.0%
GCACTTGTGTACAGAGCTGC+TGG - chr1_1:66092122-66092141 Msa0037160:intron 55.0%
TTTGGAAGTCCAATGCCCGC+TGG - chr1_1:66092786-66092805 Msa0037160:intron 55.0%
TCGAACCTAAGGCCTTGAGG+AGG - chr1_1:66093646-66093665 Msa0037160:intron 55.0%
TTGCTCCTCCTCAAGGCCTT+AGG + chr1_1:66093654-66093673 None:intergenic 55.0%
!! GTGGTGTTGGCTTGGAACCT+TGG + chr1_1:66093680-66093699 None:intergenic 55.0%
ACAGGGTGAGCATTCCTGGA+TGG - chr1_1:66093885-66093904 Msa0037160:intron 55.0%
ACTGCTTGATCTTTCGCGGG+AGG + chr1_1:66094016-66094035 None:intergenic 55.0%
GCAGAAGAGGAAACCCTTGG+TGG - chr1_1:66094533-66094552 Msa0037160:intron 55.0%
GGGAGGGGTGAAACAAATGC+AGG + chr1_1:66094911-66094930 None:intergenic 55.0%
! CAGCTTTTGAGCTGTGGGAG+GGG + chr1_1:66094926-66094945 None:intergenic 55.0%
! CCAGCTTTTGAGCTGTGGGA+GGG + chr1_1:66094927-66094946 None:intergenic 55.0%
CCTCCCACAGCTCAAAAGCT+GGG - chr1_1:66094925-66094944 Msa0037160:intron 55.0%
! GAGCCCAGCTTTTGAGCTGT+GGG + chr1_1:66094931-66094950 None:intergenic 55.0%
! AGAGCCCAGCTTTTGAGCTG+TGG + chr1_1:66094932-66094951 None:intergenic 55.0%
CGAGCGCTTGAAGAAACAGC+TGG - chr1_1:66096332-66096351 Msa0037160:intron 55.0%
ATCGCTATGCCGGTCACTTC+AGG - chr1_1:66096386-66096405 Msa0037160:intron 55.0%
TCCTCTCTGCCTGAAGTGAC+CGG + chr1_1:66096398-66096417 None:intergenic 55.0%
GTTGGAGTAGCAGGCGCAAC+AGG + chr1_1:66088907-66088926 None:intergenic 60.0%
TCACCTCTCAGACTGCTCGG+TGG - chr1_1:66089080-66089099 Msa0037160:intron 60.0%
! CTCTCAGACTGCTCGGTGGA+GGG - chr1_1:66089084-66089103 Msa0037160:intron 60.0%
GACGGAGTTCAAATCCCCCC+GGG - chr1_1:66089892-66089911 Msa0037160:CDS 60.0%
ACGGAGTTCAAATCCCCCCG+GGG - chr1_1:66089893-66089912 Msa0037160:CDS 60.0%
AGTTCAAATCCCCCCGGGGA+AGG - chr1_1:66089897-66089916 Msa0037160:CDS 60.0%
GCTTGATCTTTCGCGGGAGG+TGG + chr1_1:66094013-66094032 None:intergenic 60.0%
CCCTCCCACAGCTCAAAAGC+TGG - chr1_1:66094924-66094943 Msa0037160:intron 60.0%
! CCCAGCTTTTGAGCTGTGGG+AGG + chr1_1:66094928-66094947 None:intergenic 60.0%
CCTCCACCGAGCAGTCTGAG+AGG + chr1_1:66089086-66089105 None:intergenic 65.0%
! CCTCTCAGACTGCTCGGTGG+AGG - chr1_1:66089083-66089102 Msa0037160:intron 65.0%
GCCGGTCACTTCAGGCAGAG+AGG - chr1_1:66096394-66096413 Msa0037160:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 66088104 66096907 66088104 ID=Msa0037160;Name=Msa0037160
chr1_1 mRNA 66088104 66096907 66088104 ID=Msa0037160-mRNA-1;Parent=Msa0037160;Name=Msa0037160-mRNA-1;_AED=0.09;_eAED=0.09;_QI=94|1|1|1|0.91|0.84|13|434|417
chr1_1 exon 66088104 66088681 66088104 ID=Msa0037160-mRNA-1:exon:21366;Parent=Msa0037160-mRNA-1
chr1_1 exon 66088929 66089024 66088929 ID=Msa0037160-mRNA-1:exon:21365;Parent=Msa0037160-mRNA-1
chr1_1 exon 66089146 66089202 66089146 ID=Msa0037160-mRNA-1:exon:21364;Parent=Msa0037160-mRNA-1
chr1_1 exon 66089578 66089760 66089578 ID=Msa0037160-mRNA-1:exon:21363;Parent=Msa0037160-mRNA-1
chr1_1 exon 66089861 66089927 66089861 ID=Msa0037160-mRNA-1:exon:21362;Parent=Msa0037160-mRNA-1
chr1_1 exon 66090207 66090271 66090207 ID=Msa0037160-mRNA-1:exon:21361;Parent=Msa0037160-mRNA-1
chr1_1 exon 66091557 66091634 66091557 ID=Msa0037160-mRNA-1:exon:21360;Parent=Msa0037160-mRNA-1
chr1_1 exon 66093168 66093235 66093168 ID=Msa0037160-mRNA-1:exon:21359;Parent=Msa0037160-mRNA-1
chr1_1 exon 66094132 66094237 66094132 ID=Msa0037160-mRNA-1:exon:21358;Parent=Msa0037160-mRNA-1
chr1_1 exon 66094740 66094825 66094740 ID=Msa0037160-mRNA-1:exon:21357;Parent=Msa0037160-mRNA-1
chr1_1 exon 66095801 66095920 66095801 ID=Msa0037160-mRNA-1:exon:21356;Parent=Msa0037160-mRNA-1
chr1_1 exon 66095999 66096187 66095999 ID=Msa0037160-mRNA-1:exon:21355;Parent=Msa0037160-mRNA-1
chr1_1 exon 66096819 66096907 66096819 ID=Msa0037160-mRNA-1:exon:21354;Parent=Msa0037160-mRNA-1
chr1_1 five_prime_UTR 66096819 66096907 66096819 ID=Msa0037160-mRNA-1:five_prime_utr;Parent=Msa0037160-mRNA-1
chr1_1 five_prime_UTR 66096183 66096187 66096183 ID=Msa0037160-mRNA-1:five_prime_utr;Parent=Msa0037160-mRNA-1
chr1_1 CDS 66095999 66096182 66095999 ID=Msa0037160-mRNA-1:cds;Parent=Msa0037160-mRNA-1
chr1_1 CDS 66095801 66095920 66095801 ID=Msa0037160-mRNA-1:cds;Parent=Msa0037160-mRNA-1
chr1_1 CDS 66094740 66094825 66094740 ID=Msa0037160-mRNA-1:cds;Parent=Msa0037160-mRNA-1
chr1_1 CDS 66094132 66094237 66094132 ID=Msa0037160-mRNA-1:cds;Parent=Msa0037160-mRNA-1
chr1_1 CDS 66093168 66093235 66093168 ID=Msa0037160-mRNA-1:cds;Parent=Msa0037160-mRNA-1
chr1_1 CDS 66091557 66091634 66091557 ID=Msa0037160-mRNA-1:cds;Parent=Msa0037160-mRNA-1
chr1_1 CDS 66090207 66090271 66090207 ID=Msa0037160-mRNA-1:cds;Parent=Msa0037160-mRNA-1
chr1_1 CDS 66089861 66089927 66089861 ID=Msa0037160-mRNA-1:cds;Parent=Msa0037160-mRNA-1
chr1_1 CDS 66089578 66089760 66089578 ID=Msa0037160-mRNA-1:cds;Parent=Msa0037160-mRNA-1
chr1_1 CDS 66089146 66089202 66089146 ID=Msa0037160-mRNA-1:cds;Parent=Msa0037160-mRNA-1
chr1_1 CDS 66088929 66089024 66088929 ID=Msa0037160-mRNA-1:cds;Parent=Msa0037160-mRNA-1
chr1_1 CDS 66088538 66088681 66088538 ID=Msa0037160-mRNA-1:cds;Parent=Msa0037160-mRNA-1
chr1_1 three_prime_UTR 66088104 66088537 66088104 ID=Msa0037160-mRNA-1:three_prime_utr;Parent=Msa0037160-mRNA-1
Gene Sequence

>Msa0037160

ATGCAAAATCCAGAAGCAAACCAGCTTCCTGAAGTTGATTCATTGCCGGATGGGTTTGTTGAGGGCACTGCCGAACCTGTTGCGCCTGCTACTCCAACTCCTGAACAAGAGAAGCCCATCAGTGATTACAAGGAGGATGGTTTCATTGATTGTGGTCATTCTAATGGATTATCAAACGTGCCGGACTGCTCGGTGGAGGGACATATTGCAGCACCTCTAGCTAGTTCTGTTTCCGAGTCTCAACCATCCAGAAGCAATGATGTAAAAGAGCAACAACAAGGAGAAGGCCAGAGTTCAGATAAATCTAAACAACCTTTGGAGACAAAAGCACTGCCTGTAAAGGATGCATGTGCTTCTGGGATGGTTGATTCTTCAAAAAACAAAAAATCAGAAACTGGGGAAAAACGCAAGGGTTCAAAGCGTGCACTTAAATCAGAAAAGGAGCTCTTAGAGTTTTCACTCAAGTATCAACAAGTATTGGCTGAAAGAGATGCAGCTTTTGCCGTCAGAGATAAGCTTGAGTCACTATGCAGGGAGTTACAGCGTCAAAATAAAATGCTGATGGAAGAATGCAAACGTGTATCAACTGAGGGGCAAAACTTGAGGATGGACTTGTCAGCTAAGTTCCAAGATGCAATCAAGGATGTGAGTATCAGGCTCGAAGAACGAAAGGATGATTGCCTTTCTCAGCTAAAGGAGAACGACATGTTAAGAAACAATTTAAAGCAACTTGCTGAGCAATATGAACTATCTGAGCAGCAATATGCCCAGAAGTTGAAGCAAAAGTCATTGGAGCTACAGATTGCAGAATTAAAAATTAAGCAACATGAGGAAAGATCTGCTCAGGAACAGTCACAAATGAAATTATATGCAGAACAAGTATCTCAGTTATTGGCGACTGAGAAGAATTTGCGTTTGCAGCTGACAACTGATGGAGAGAAATTCCAACAGTTCCAGGAAGCATTGACAAAGAGCAATGATGTATTTGAAACATTTAAACAAGAGATTGAGAAGATGGCAAAATCAATGAAGGAACTCAAGAAGGAGAATCAATTTTTGAAGAGTAAATCAGAAAAGTCTGATATTACACTTATAGAGTTAGTTGACGAGCGCGAGCGCTTGAAGAAACAGCTGGAGAAAACGAAAAATCAAAAAGAAAAACTTGAATCGCTATGCCGGTCACTTCAGGCAGAGAGGAAGCAAAGTTTATCCGAGAACAAGAGTAATAATAGTAACAACTCGGCTCCAATATGA

Protein sequence

>Msa0037160

MQNPEANQLPEVDSLPDGFVEGTAEPVAPATPTPEQEKPISDYKEDGFIDCGHSNGLSNVPDCSVEGHIAAPLASSVSESQPSRSNDVKEQQQGEGQSSDKSKQPLETKALPVKDACASGMVDSSKNKKSETGEKRKGSKRALKSEKELLEFSLKYQQVLAERDAAFAVRDKLESLCRELQRQNKMLMEECKRVSTEGQNLRMDLSAKFQDAIKDVSIRLEERKDDCLSQLKENDMLRNNLKQLAEQYELSEQQYAQKLKQKSLELQIAELKIKQHEERSAQEQSQMKLYAEQVSQLLATEKNLRLQLTTDGEKFQQFQEALTKSNDVFETFKQEIEKMAKSMKELKKENQFLKSKSEKSDITLIELVDERERLKKQLEKTKNQKEKLESLCRSLQAERKQSLSENKSNNSNNSAPI*