AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1342760

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1342760 MtrunA17_Chr1g0193371 97.838 370 5 3 1 368 1 369 0.0 736
Msa1342760 MtrunA17_Chr7g0271241 57.072 403 115 21 1 368 1 380 4.09e-117 344
Msa1342760 MtrunA17_Chr7g0270891 48.312 385 163 8 1 367 1 367 4.28e-103 308
Msa1342760 MtrunA17_Chr1g0193801 50.372 403 145 17 1 365 1 386 7.24e-103 308
Msa1342760 MtrunA17_Chr4g0058631 71.951 164 44 1 1 162 1 164 1.40e-82 256
Msa1342760 MtrunA17_Chr1g0211161 60.194 206 69 4 3 204 4 200 4.86e-77 237
Msa1342760 MtrunA17_Chr3g0117091 82.946 129 22 0 1 129 1 129 8.22e-77 240
Msa1342760 MtrunA17_Chr2g0330041 72.180 133 37 0 1 133 1 133 3.17e-69 223
Msa1342760 MtrunA17_Chr8g0342521 76.423 123 29 0 1 123 1 123 2.05e-68 219
Msa1342760 MtrunA17_Chr8g0342541 75.610 123 30 0 1 123 1 123 7.52e-68 217
Msa1342760 MtrunA17_Chr2g0309911 70.769 130 37 1 1 130 1 129 1.06e-67 216
Msa1342760 MtrunA17_Chr4g0037141 60.403 149 59 0 1 149 1 149 7.49e-64 205
Msa1342760 MtrunA17_Chr6g0453471 59.412 170 60 3 1 170 1 161 4.81e-63 205
Msa1342760 MtrunA17_Chr8g0387421 72.034 118 33 0 1 118 1 118 6.98e-63 203
Msa1342760 MtrunA17_Chr4g0039971 67.969 128 41 0 1 128 2 129 1.29e-62 204
Msa1342760 MtrunA17_Chr8g0385321 68.217 129 41 0 1 129 1 129 1.35e-62 202
Msa1342760 MtrunA17_Chr3g0115821 64.394 132 47 0 1 132 1 132 1.65e-62 203
Msa1342760 MtrunA17_Chr7g0217741 42.953 298 137 6 1 298 1 265 2.36e-62 202
Msa1342760 MtrunA17_Chr3g0131121 65.649 131 45 0 1 131 1 131 3.36e-62 201
Msa1342760 MtrunA17_Chr8g0342481 76.068 117 27 1 1 116 1 117 4.49e-62 204
Msa1342760 MtrunA17_Chr4g0042671 70.312 128 38 0 1 128 1 128 2.21e-61 202
Msa1342760 MtrunA17_Chr8g0349261 68.182 132 40 2 1 130 1 132 5.18e-61 198
Msa1342760 MtrunA17_Chr5g0435101 65.600 125 43 0 3 127 2 126 5.57e-61 195
Msa1342760 MtrunA17_Chr5g0434571 66.923 130 43 0 1 130 37 166 6.14e-61 199
Msa1342760 MtrunA17_Chr3g0110351 66.923 130 43 0 1 130 1 130 1.66e-60 197
Msa1342760 MtrunA17_Chr5g0410961 64.122 131 47 0 1 131 1 131 1.68e-60 198
Msa1342760 MtrunA17_Chr7g0228891 55.357 168 72 2 1 165 1 168 2.18e-60 196
Msa1342760 MtrunA17_Chr5g0397231 74.545 110 28 0 1 110 1 110 2.65e-60 197
Msa1342760 MtrunA17_Chr1g0203411 69.748 119 36 0 1 119 1 119 9.04e-60 194
Msa1342760 MtrunA17_Chr4g0032401 80.374 107 21 0 11 117 16 122 1.11e-59 196
Msa1342760 MtrunA17_Chr2g0328771 79.245 106 22 0 12 117 20 125 1.38e-59 195
Msa1342760 MtrunA17_Chr4g0057031 64.122 131 47 0 1 131 1 131 4.74e-59 192
Msa1342760 MtrunA17_Chr5g0395281 68.333 120 38 0 12 131 12 131 9.57e-59 192
Msa1342760 MtrunA17_Chr2g0281071 65.891 129 43 1 1 128 1 129 1.24e-58 193
Msa1342760 MtrunA17_Chr2g0323411 67.969 128 41 0 1 128 1 128 1.49e-58 192
Msa1342760 MtrunA17_Chr3g0088461 78.899 109 23 0 9 117 19 127 1.66e-58 193
Msa1342760 MtrunA17_Chr6g0452271 52.047 171 78 2 1 169 1 169 2.10e-58 192
Msa1342760 MtrunA17_Chr4g0048511 65.116 129 44 1 1 128 1 129 5.67e-58 192
Msa1342760 MtrunA17_Chr3g0103281 54.878 164 70 1 1 160 1 164 5.86e-58 191
Msa1342760 MtrunA17_Chr4g0044421 64.286 126 45 0 1 126 1 126 1.16e-56 183
Msa1342760 MtrunA17_Chr1g0203441 72.269 119 32 1 9 127 10 127 7.25e-56 184
Msa1342760 MtrunA17_Chr1g0187761 68.067 119 38 0 1 119 1 119 1.33e-55 182
Msa1342760 MtrunA17_Chr6g0470971 64.444 135 47 1 9 142 11 145 3.65e-54 180
Msa1342760 MtrunA17_Chr1g0167661 67.241 116 38 0 1 116 1 116 3.31e-53 176
Msa1342760 MtrunA17_Chr3g0121241 62.903 124 46 0 6 129 36 159 1.07e-52 177
Msa1342760 MtrunA17_Chr7g0274581 60.331 121 48 0 1 121 1 121 1.21e-52 173
Msa1342760 MtrunA17_Chr1g0167691 66.379 116 39 0 1 116 1 116 1.43e-52 175
Msa1342760 MtrunA17_Chr5g0417821 65.546 119 41 0 12 130 7 125 4.48e-52 174
Msa1342760 MtrunA17_Chr7g0261281 64.407 118 42 0 1 118 1 118 7.74e-52 174
Msa1342760 MtrunA17_Chr8g0342511 81.609 87 16 0 1 87 1 87 1.59e-50 164
Msa1342760 MtrunA17_Chr4g0070611 61.864 118 45 0 1 118 1 118 3.39e-50 170
Msa1342760 MtrunA17_Chr2g0323351 62.931 116 43 0 1 116 1 116 3.79e-50 168
Msa1342760 MtrunA17_Chr8g0342531 79.775 89 18 0 1 89 1 89 4.74e-50 165
Msa1342760 MtrunA17_Chr4g0068061 65.517 116 40 0 1 116 1 116 5.94e-50 171
Msa1342760 MtrunA17_Chr4g0022931 61.538 117 45 0 5 121 6 122 7.43e-50 168
Msa1342760 MtrunA17_Chr4g0070641 62.393 117 44 0 1 117 1 117 1.55e-49 164
Msa1342760 MtrunA17_Chr8g0346561 61.345 119 46 0 1 119 1 119 5.75e-49 167
Msa1342760 MtrunA17_Chr4g0022901 63.964 111 40 0 5 115 6 116 1.01e-48 165
Msa1342760 MtrunA17_Chr1g0151941 51.852 135 61 2 1 134 1 132 2.38e-48 164
Msa1342760 MtrunA17_Chr2g0311221 64.220 109 39 0 2 110 4 112 2.55e-48 166
Msa1342760 MtrunA17_Chr1g0152011 46.512 172 83 2 1 163 1 172 4.20e-48 166
Msa1342760 MtrunA17_Chr7g0275911 60.684 117 46 0 1 117 1 117 5.73e-48 163
Msa1342760 MtrunA17_Chr5g0400821 44.809 183 96 3 1 182 1 179 1.22e-47 164
Msa1342760 MtrunA17_Chr7g0217221 59.664 119 48 0 1 119 1 119 2.71e-47 161
Msa1342760 MtrunA17_Chr4g0028311 62.393 117 43 1 1 116 1 117 3.27e-47 163
Msa1342760 MtrunA17_Chr3g0135311 59.829 117 46 1 1 116 1 117 7.87e-47 162
Msa1342760 MtrunA17_Chr4g0022911 59.483 116 46 1 1 115 1 116 7.95e-47 161
Msa1342760 MtrunA17_Chr1g0194951 63.793 116 42 0 1 116 1 116 9.34e-47 163
Msa1342760 MtrunA17_Chr2g0327351 63.964 111 39 1 1 110 1 111 6.13e-46 159
Msa1342760 MtrunA17_Chr7g0254411 48.466 163 73 2 1 161 1 154 1.40e-45 159
Msa1342760 MtrunA17_Chr4g0060721 47.059 170 81 3 1 164 2 168 1.53e-45 159
Msa1342760 MtrunA17_Chr8g0342461 74.444 90 22 1 1 89 1 90 2.14e-45 152
Msa1342760 MtrunA17_Chr4g0054391 62.727 110 40 1 1 109 1 110 6.15e-45 156
Msa1342760 MtrunA17_Chr3g0092401 58.475 118 49 0 1 118 2 119 6.78e-45 156
Msa1342760 MtrunA17_Chr7g0264641 58.974 117 47 1 1 116 1 117 7.21e-45 155
Msa1342760 MtrunA17_Chr8g0342471 74.444 90 22 1 1 89 1 90 7.64e-45 151
Msa1342760 MtrunA17_Chr3g0099131 63.551 107 39 0 12 118 41 147 2.55e-44 160
Msa1342760 MtrunA17_Chr7g0247131 63.889 108 38 1 43 149 9 116 3.58e-44 153
Msa1342760 MtrunA17_Chr7g0228231 57.025 121 50 1 1 119 1 121 9.59e-44 150
Msa1342760 MtrunA17_Chr4g0022881 61.321 106 41 0 9 114 9 114 1.05e-43 151
Msa1342760 MtrunA17_Chr1g0186061 61.261 111 43 0 5 115 13 123 1.06e-43 152
Msa1342760 MtrunA17_Chr6g0453211 60.909 110 43 0 1 110 1 110 1.09e-43 153
Msa1342760 MtrunA17_Chr1g0168661 58.772 114 47 0 4 117 13 126 2.31e-43 151
Msa1342760 MtrunA17_Chr1g0209661 53.659 123 57 0 11 133 26 148 4.02e-43 152
Msa1342760 MtrunA17_Chr4g0022891 61.905 105 40 0 9 113 9 113 4.45e-43 149
Msa1342760 MtrunA17_Chr6g0450101 60.185 108 43 0 11 118 13 120 4.91e-43 148
Msa1342760 MtrunA17_Chr4g0055981 47.403 154 78 1 9 159 52 205 1.90e-42 147
Msa1342760 MtrunA17_Chr7g0269831 63.793 116 42 0 1 116 1 116 2.18e-42 151
Msa1342760 MtrunA17_Chr4g0072751 58.559 111 45 1 1 110 1 111 4.56e-42 150
Msa1342760 MtrunA17_Chr1g0194301 55.172 116 52 0 12 127 33 148 9.59e-42 147
Msa1342760 MtrunA17_Chr6g0487491 54.839 124 47 2 1 115 1 124 1.43e-41 146
Msa1342760 MtrunA17_Chr8g0354661 61.321 106 41 0 12 117 37 142 1.53e-41 152
Msa1342760 MtrunA17_Chr3g0080861 59.434 106 43 0 12 117 37 142 2.76e-41 151
Msa1342760 MtrunA17_Chr1g0154031 61.321 106 41 0 12 117 76 181 5.62e-41 149
Msa1342760 MtrunA17_Chr8g0343831 58.716 109 45 0 10 118 6 114 1.41e-40 143
Msa1342760 MtrunA17_Chr1g0180391 47.853 163 69 4 12 173 19 166 1.47e-40 142
Msa1342760 MtrunA17_Chr1g0194291 57.018 114 49 0 12 125 21 134 7.07e-40 142
Msa1342760 MtrunA17_Chr4g0042611 65.909 88 30 0 1 88 1 88 9.07e-40 136
Msa1342760 MtrunA17_Chr2g0322521 62.264 106 40 0 12 117 29 134 6.01e-39 143
Msa1342760 MtrunA17_Chr7g0240821 58.000 100 42 0 17 116 6 105 4.67e-37 133
Msa1342760 MtrunA17_Chr5g0434831 57.143 105 45 0 12 116 7 111 7.34e-37 132
Msa1342760 MtrunA17_Chr5g0434931 54.286 105 48 0 12 116 35 139 2.45e-36 133
Msa1342760 MtrunA17_Chr5g0434911 52.727 110 52 0 7 116 16 125 3.26e-36 132
Msa1342760 MtrunA17_Chr1g0192411 47.368 152 67 3 11 156 11 155 8.52e-36 134
Msa1342760 MtrunA17_Chr2g0327821 51.402 107 52 0 9 115 3 109 9.34e-36 130
Msa1342760 MtrunA17_Chr2g0294811 62.500 88 33 0 1 88 1 88 9.74e-36 126
Msa1342760 MtrunA17_Chr5g0440781 51.786 112 52 2 13 123 13 123 1.78e-35 128
Msa1342760 MtrunA17_Chr2g0293911 54.310 116 53 0 12 127 24 139 2.51e-35 132
Msa1342760 MtrunA17_Chr4g0030881 52.212 113 47 1 13 118 8 120 2.77e-35 130
Msa1342760 MtrunA17_Chr4g0068921 55.263 114 51 0 12 125 24 137 3.38e-35 127
Msa1342760 MtrunA17_Chr7g0220341 46.377 138 60 2 12 147 25 150 4.50e-35 129
Msa1342760 MtrunA17_Chr5g0440761 51.786 112 52 2 13 123 13 123 1.23e-34 128
Msa1342760 MtrunA17_Chr5g0441141 51.786 112 52 2 13 123 13 123 1.24e-34 128
Msa1342760 MtrunA17_Chr5g0434841 54.286 105 48 0 12 116 20 124 1.88e-34 129
Msa1342760 MtrunA17_Chr8g0360111 56.436 101 44 0 12 112 25 125 2.24e-34 127
Msa1342760 MtrunA17_Chr7g0228991 53.333 105 49 0 12 116 29 133 7.01e-34 126
Msa1342760 MtrunA17_Chr2g0323321 61.628 86 33 0 7 92 6 91 2.33e-33 120
Msa1342760 MtrunA17_Chr5g0441131 50.000 112 54 2 13 123 10 120 9.37e-33 120
Msa1342760 MtrunA17_Chr8g0334881 51.818 110 52 1 9 117 7 116 1.30e-32 124
Msa1342760 MtrunA17_Chr3g0099141 60.241 83 33 0 12 94 40 122 1.38e-32 119
Msa1342760 MtrunA17_Chr4g0013361 42.581 155 84 3 12 164 10 161 1.49e-32 123
Msa1342760 MtrunA17_Chr5g0395221 65.000 80 28 0 9 88 9 88 2.40e-32 116
Msa1342760 MtrunA17_Chr3g0093811 58.889 90 37 0 43 132 13 102 6.79e-31 118
Msa1342760 MtrunA17_Chr4g0008551 44.667 150 64 5 14 158 38 173 9.62e-30 117
Msa1342760 MtrunA17_Chr5g0401731 50.427 117 55 2 14 129 15 129 1.40e-29 116
Msa1342760 MtrunA17_Chr4g0053431 52.941 102 47 1 14 115 5 105 3.14e-28 111
Msa1342760 MtrunA17_Chr5g0429661 33.628 226 106 9 12 226 120 312 7.14e-28 112
Msa1342760 MtrunA17_Chr6g0454921 52.427 103 46 2 14 115 15 115 3.08e-27 107
Msa1342760 MtrunA17_Chr7g0238631 49.533 107 51 2 11 116 110 214 1.21e-26 111
Msa1342760 MtrunA17_Chr3g0133601 51.961 102 48 1 14 115 37 137 3.58e-26 104
Msa1342760 MtrunA17_Chr3g0139671 47.664 107 53 2 11 116 82 186 1.28e-25 108
Msa1342760 MtrunA17_Chr6g0453751 54.839 93 33 2 12 95 20 112 1.50e-25 100
Msa1342760 MtrunA17_Chr3g0117511 44.660 103 54 2 14 115 183 283 4.53e-25 105
Msa1342760 MtrunA17_Chr7g0229101 60.563 71 28 0 43 113 3 73 9.05e-25 100
Msa1342760 MtrunA17_Chr5g0434901 57.746 71 30 0 43 113 4 74 3.55e-24 95.9
Msa1342760 MtrunA17_Chr1g0157731 45.794 107 55 2 11 116 88 192 3.74e-24 104
Msa1342760 MtrunA17_Chr6g0480581 43.396 106 57 2 14 118 4 107 4.08e-24 99.4
Msa1342760 MtrunA17_Chr5g0417621 42.202 109 60 2 11 118 131 237 4.79e-24 102
Msa1342760 MtrunA17_Chr7g0229131 58.333 72 30 0 43 114 3 74 5.37e-24 97.1
Msa1342760 MtrunA17_Chr4g0042501 43.396 106 57 2 14 118 105 208 5.54e-24 102
Msa1342760 MtrunA17_Chr4g0058991 42.593 108 59 2 9 115 204 309 6.98e-24 102
Msa1342760 MtrunA17_Chr6g0460661 41.509 106 59 2 14 118 16 119 1.17e-23 95.9
Msa1342760 MtrunA17_Chr5g0437321 50.000 100 47 2 14 112 19 116 1.17e-23 99.4
Msa1342760 MtrunA17_Chr5g0425591 50.000 84 41 1 13 95 10 93 2.90e-23 92.8
Msa1342760 MtrunA17_Chr1g0177901 48.864 88 41 2 24 111 7 90 2.57e-22 93.6
Msa1342760 MtrunA17_Chr3g0125801 43.396 106 57 2 14 118 16 119 5.00e-22 94.7
Msa1342760 MtrunA17_Chr7g0228531 40.196 102 59 2 14 115 220 319 1.80e-21 95.1
Msa1342760 MtrunA17_Chr5g0397841 45.455 99 51 2 12 109 108 204 1.92e-21 95.5
Msa1342760 MtrunA17_Chr6g0460671 40.566 106 60 2 14 118 99 202 9.61e-21 92.0
Msa1342760 MtrunA17_Chr7g0228401 43.396 106 55 3 25 129 290 391 1.26e-20 93.2
Msa1342760 MtrunA17_Chr7g0254261 30.769 208 122 7 8 199 83 284 1.46e-20 91.7
Msa1342760 MtrunA17_Chr7g0228481 38.182 110 63 3 14 120 220 327 1.51e-19 89.7
Msa1342760 MtrunA17_Chr7g0238651 39.048 105 62 1 17 119 10 114 2.12e-18 85.5
Msa1342760 MtrunA17_Chr7g0233061 35.780 109 64 4 14 119 180 285 2.85e-17 82.0
Msa1342760 MtrunA17_Chr1g0193901 50.562 89 42 2 10 96 9 97 3.20e-17 76.6
Msa1342760 MtrunA17_Chr1g0193891 50.562 89 42 2 10 96 9 97 3.20e-17 76.6
Msa1342760 MtrunA17_Chr1g0193871 50.562 89 42 2 10 96 9 97 3.20e-17 76.6
Msa1342760 MtrunA17_Chr1g0193881 50.562 89 42 2 10 96 9 97 3.20e-17 76.6
Msa1342760 MtrunA17_Chr5g0416341 36.190 105 66 1 17 121 29 132 3.57e-17 82.8
Msa1342760 MtrunA17_Chr8g0362231 35.088 114 72 2 17 130 25 136 2.18e-16 80.1
Msa1342760 MtrunA17_Chr5g0395231 37.857 140 81 4 78 216 5 139 2.76e-14 72.0
Msa1342760 MtrunA17_Chr3g0104491 36.000 100 57 3 53 145 1 100 1.58e-13 70.5
Msa1342760 MtrunA17_Chr4g0042621 71.739 46 12 1 84 128 9 54 4.56e-13 69.3
Msa1342760 MtrunA17_Chr7g0247141 57.447 47 19 1 1 46 1 47 1.56e-12 62.0
Msa1342760 MtrunA17_Chr5g0434871 55.814 43 19 0 74 116 2 44 5.50e-12 60.8
Msa1342760 MtrunA17_Chr3g0145551 62.500 40 15 0 92 131 2 41 7.52e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1342760 AT1G09540.1 47.433 409 131 11 1 368 1 366 8.43e-112 331
Msa1342760 AT1G57560.1 49.731 372 125 14 1 368 1 314 1.48e-98 295
Msa1342760 AT4G01680.1 46.832 363 141 8 1 343 1 331 5.40e-90 274
Msa1342760 AT1G57560.2 69.430 193 46 2 1 187 1 186 1.42e-89 271
Msa1342760 AT4G01680.3 81.290 155 28 1 1 154 1 155 3.02e-89 269
Msa1342760 AT5G26660.1 69.022 184 53 2 1 180 1 184 9.57e-88 269
Msa1342760 AT4G01680.2 45.333 375 141 9 1 343 1 343 1.25e-86 266
Msa1342760 AT3G12720.1 72.222 126 34 1 1 126 12 136 1.53e-68 218
Msa1342760 AT3G13890.2 79.310 116 24 0 1 116 1 116 2.51e-67 216
Msa1342760 AT3G61250.1 69.767 129 39 0 1 129 1 129 7.38e-65 208
Msa1342760 AT3G13890.1 73.600 125 24 1 1 116 1 125 4.45e-64 208
Msa1342760 AT4G12350.1 52.764 199 77 4 1 194 1 187 5.89e-64 206
Msa1342760 AT1G63910.1 68.750 128 40 0 1 128 1 128 8.61e-64 208
Msa1342760 AT1G66230.1 59.877 162 62 1 1 162 1 159 2.41e-63 204
Msa1342760 AT5G15310.1 62.338 154 52 1 1 154 1 148 7.13e-63 204
Msa1342760 AT5G15310.2 62.338 154 52 1 1 154 1 148 9.11e-63 203
Msa1342760 AT5G15310.4 62.338 154 52 1 1 154 1 148 1.78e-62 200
Msa1342760 AT5G16600.1 68.421 133 42 0 1 133 1 133 3.12e-62 202
Msa1342760 AT3G01140.2 68.939 132 41 0 1 132 1 132 9.07e-62 202
Msa1342760 AT4G22680.1 62.069 145 53 1 1 143 1 145 1.13e-61 199
Msa1342760 AT4G34990.1 61.268 142 55 0 1 142 1 142 1.79e-61 199
Msa1342760 AT3G02940.2 64.122 131 47 0 1 131 1 131 2.08e-61 200
Msa1342760 AT3G02940.1 64.122 131 47 0 1 131 1 131 4.36e-61 199
Msa1342760 AT3G02940.3 64.122 131 47 0 1 131 1 131 4.36e-61 199
Msa1342760 AT1G34670.1 64.394 132 47 0 1 132 1 132 4.44e-61 201
Msa1342760 AT5G10280.1 64.394 132 47 0 1 132 1 132 5.70e-61 199
Msa1342760 AT5G65230.1 66.412 131 44 0 1 131 1 131 6.76e-61 198
Msa1342760 AT2G16720.1 63.158 133 49 0 1 133 1 133 6.87e-61 197
Msa1342760 AT1G22640.1 63.359 131 48 0 1 131 1 131 8.48e-61 196
Msa1342760 AT5G16770.4 63.359 131 48 0 1 131 1 131 2.54e-60 197
Msa1342760 AT5G16770.3 63.359 131 48 0 1 131 1 131 2.54e-60 197
Msa1342760 AT4G38620.1 63.359 131 48 0 1 131 1 131 2.68e-60 196
Msa1342760 AT5G16770.1 63.359 131 48 0 1 131 1 131 5.11e-60 197
Msa1342760 AT5G16770.2 63.359 131 48 0 1 131 1 131 5.11e-60 197
Msa1342760 AT4G05100.1 65.891 129 43 1 1 128 1 129 5.28e-60 196
Msa1342760 AT4G28110.1 65.625 128 44 0 1 128 1 128 9.03e-60 194
Msa1342760 AT4G21440.1 65.625 128 44 0 1 128 1 128 9.77e-60 197
Msa1342760 AT4G09460.1 48.404 188 81 1 1 188 1 172 2.58e-59 192
Msa1342760 AT3G01140.1 69.291 127 39 0 6 132 49 175 7.73e-59 196
Msa1342760 AT5G56110.1 64.394 132 47 0 1 132 1 132 1.76e-58 192
Msa1342760 AT5G12870.1 76.147 109 26 0 10 118 16 124 4.70e-58 190
Msa1342760 AT4G17785.2 64.341 129 45 1 1 128 1 129 6.65e-58 192
Msa1342760 AT4G17785.1 64.341 129 45 1 1 128 1 129 7.91e-58 192
Msa1342760 AT5G60890.1 61.240 129 50 0 1 129 1 129 1.28e-57 189
Msa1342760 AT5G14340.1 61.364 132 51 0 1 132 13 144 2.21e-57 188
Msa1342760 AT5G61420.2 61.194 134 52 0 1 134 1 134 3.04e-57 191
Msa1342760 AT5G07690.1 60.432 139 55 0 1 139 1 139 3.21e-57 190
Msa1342760 AT1G74430.1 65.625 128 44 0 1 128 1 128 1.22e-56 186
Msa1342760 AT3G08500.1 71.795 117 30 1 4 117 19 135 3.16e-56 187
Msa1342760 AT1G35515.1 60.305 131 52 0 1 131 1 131 3.23e-56 183
Msa1342760 AT5G62320.1 50.000 176 78 2 2 170 3 175 7.98e-56 183
Msa1342760 AT1G06180.1 68.908 119 37 0 1 119 1 119 1.30e-55 182
Msa1342760 AT1G18570.1 61.832 131 49 1 1 130 1 131 6.09e-55 184
Msa1342760 AT3G28470.1 63.636 132 48 0 1 132 1 132 7.79e-55 183
Msa1342760 AT5G54230.1 64.062 128 46 0 1 128 1 128 8.49e-55 183
Msa1342760 AT5G07700.1 60.769 130 51 0 1 130 1 130 8.63e-55 183
Msa1342760 AT5G07700.2 60.769 130 51 0 1 130 1 130 8.63e-55 183
Msa1342760 AT3G23250.1 43.318 217 101 3 1 199 1 213 1.27e-54 181
Msa1342760 AT2G31180.1 58.042 143 57 1 1 140 1 143 5.56e-54 179
Msa1342760 AT3G13540.1 62.097 124 47 0 6 129 17 140 5.87e-54 178
Msa1342760 AT1G74080.1 61.240 129 50 0 1 129 1 129 9.63e-54 181
Msa1342760 AT1G56160.1 67.826 115 37 0 2 116 4 118 3.44e-53 178
Msa1342760 AT1G18710.1 57.534 146 55 1 1 146 1 139 6.37e-53 176
Msa1342760 AT1G79180.1 66.949 118 39 0 2 119 4 121 1.50e-52 176
Msa1342760 AT1G16490.1 65.217 115 40 0 2 116 4 118 6.65e-51 171
Msa1342760 AT5G26660.2 88.235 85 10 0 45 129 14 98 1.17e-50 172
Msa1342760 AT3G48920.1 67.925 106 34 0 9 114 15 120 4.06e-49 166
Msa1342760 AT5G52260.1 69.369 111 34 0 9 119 9 119 8.06e-49 166
Msa1342760 AT3G12820.1 64.035 114 41 0 3 116 5 118 3.15e-48 163
Msa1342760 AT2G47460.1 57.576 132 56 0 1 132 1 132 1.82e-47 165
Msa1342760 AT5G23000.1 61.538 117 44 1 1 116 1 117 2.29e-47 164
Msa1342760 AT5G62470.2 51.266 158 62 2 1 155 1 146 4.74e-47 164
Msa1342760 AT4G25560.1 65.179 112 39 0 8 119 6 117 6.59e-47 161
Msa1342760 AT5G49330.1 62.931 116 43 0 1 116 1 116 7.48e-47 163
Msa1342760 AT3G47600.1 59.322 118 48 0 1 118 1 118 1.08e-46 162
Msa1342760 AT5G57620.1 60.684 117 45 1 1 116 1 117 1.12e-46 162
Msa1342760 AT3G62610.1 61.207 116 45 0 1 116 1 116 1.21e-46 162
Msa1342760 AT3G49690.1 61.538 117 44 1 1 116 1 117 1.65e-46 161
Msa1342760 AT5G65790.1 60.684 117 45 1 1 116 1 117 2.12e-46 162
Msa1342760 AT1G74650.1 62.069 116 44 0 1 116 1 116 2.58e-46 161
Msa1342760 AT1G08810.1 51.220 164 73 3 1 162 1 159 3.22e-46 159
Msa1342760 AT1G79180.2 52.318 151 39 1 2 119 4 154 1.31e-45 159
Msa1342760 AT5G62470.1 51.266 158 61 3 1 155 1 145 3.50e-45 159
Msa1342760 AT2G36890.1 55.906 127 55 1 1 126 1 127 7.82e-45 156
Msa1342760 AT2G36890.2 55.906 127 55 1 1 126 42 168 1.05e-44 157
Msa1342760 AT5G14750.1 60.577 104 41 0 13 116 17 120 1.48e-44 152
Msa1342760 AT5G06100.1 64.151 106 38 0 12 117 32 137 1.76e-44 159
Msa1342760 AT3G27810.1 58.559 111 46 0 11 121 19 129 2.03e-44 153
Msa1342760 AT4G37780.1 58.974 117 47 1 1 116 1 117 2.04e-44 155
Msa1342760 AT5G35550.1 64.815 108 38 0 9 116 11 118 2.51e-44 154
Msa1342760 AT3G01530.1 60.185 108 43 0 12 119 25 132 3.24e-44 152
Msa1342760 AT3G28910.1 54.264 129 57 1 1 129 1 127 8.11e-44 154
Msa1342760 AT5G06100.5 64.151 106 38 0 12 117 32 137 8.78e-44 159
Msa1342760 AT5G06100.2 64.151 106 38 0 12 117 32 137 8.78e-44 159
Msa1342760 AT5G06100.3 64.151 106 38 0 12 117 32 137 8.78e-44 159
Msa1342760 AT5G06100.4 64.151 106 38 0 12 117 32 137 8.78e-44 159
Msa1342760 AT5G40350.1 50.714 140 59 1 11 140 16 155 1.48e-43 150
Msa1342760 AT5G40330.1 57.407 108 46 0 9 116 9 116 2.61e-43 150
Msa1342760 AT3G11440.2 61.321 106 41 0 12 117 41 146 7.69e-43 155
Msa1342760 AT3G27920.1 57.009 107 46 0 10 116 12 118 1.28e-42 148
Msa1342760 AT2G26960.1 58.407 113 46 1 9 121 17 128 3.63e-42 152
Msa1342760 AT5G55020.1 62.617 107 40 0 12 118 26 132 3.72e-42 154
Msa1342760 AT3G11440.3 61.321 106 41 0 12 117 41 146 3.77e-42 155
Msa1342760 AT3G11440.4 61.321 106 41 0 12 117 41 146 3.77e-42 155
Msa1342760 AT3G11440.1 61.321 106 41 0 12 117 41 146 3.77e-42 155
Msa1342760 AT5G52600.1 52.239 134 55 2 9 133 9 142 4.00e-42 146
Msa1342760 AT3G30210.1 47.273 165 85 1 13 175 28 192 4.67e-42 148
Msa1342760 AT4G13480.1 63.810 105 38 0 13 117 7 111 5.12e-42 148
Msa1342760 AT1G68320.1 55.285 123 55 0 10 132 17 139 5.25e-42 149
Msa1342760 AT3G24310.1 62.857 105 39 0 13 117 19 123 6.46e-42 148
Msa1342760 AT1G25340.1 55.833 120 53 0 13 132 19 138 1.46e-41 147
Msa1342760 AT2G32460.1 59.259 108 44 0 10 117 16 123 5.37e-41 150
Msa1342760 AT2G32460.2 59.259 108 44 0 10 117 4 111 5.89e-41 150
Msa1342760 AT2G47190.1 37.811 201 111 1 12 198 20 220 1.18e-40 144
Msa1342760 AT4G26930.1 59.813 107 43 0 12 118 19 125 3.01e-40 146
Msa1342760 AT1G48000.1 55.652 115 51 0 11 125 31 145 4.30e-40 142
Msa1342760 AT5G59780.3 53.636 110 51 0 9 118 5 114 5.87e-37 134
Msa1342760 AT1G25340.2 53.333 120 51 1 13 132 19 133 1.03e-36 134
Msa1342760 AT3G53200.1 55.140 107 48 0 9 115 6 112 1.63e-36 132
Msa1342760 AT3G06490.1 56.034 116 51 0 12 127 19 134 1.73e-36 135
Msa1342760 AT1G25340.3 53.333 120 51 1 13 132 19 133 2.00e-36 134
Msa1342760 AT3G46130.1 54.717 106 48 0 13 118 10 115 2.05e-36 133
Msa1342760 AT2G26950.1 48.696 115 56 1 6 120 10 121 2.87e-35 133
Msa1342760 AT5G49620.1 54.310 116 53 0 12 127 26 141 5.55e-35 130
Msa1342760 AT1G66370.1 55.769 104 46 0 12 115 8 111 9.55e-35 128
Msa1342760 AT3G60460.1 51.818 110 52 1 9 117 8 117 8.86e-33 124
Msa1342760 AT1G66380.1 58.654 104 43 0 12 115 8 111 1.37e-32 119
Msa1342760 AT1G56650.1 51.667 120 50 1 12 123 8 127 1.80e-31 119
Msa1342760 AT5G49620.2 48.462 130 53 1 12 127 26 155 2.14e-31 121
Msa1342760 AT5G35550.2 72.973 74 20 0 43 116 48 121 4.83e-31 119
Msa1342760 AT1G66390.1 56.604 106 46 0 10 115 6 111 9.66e-31 117
Msa1342760 AT3G27810.2 61.039 77 30 0 45 121 4 80 1.18e-30 115
Msa1342760 AT3G12820.2 72.464 69 19 0 48 116 2 70 1.49e-30 115
Msa1342760 AT5G14750.3 68.116 69 22 0 48 116 18 86 6.18e-30 113
Msa1342760 AT5G40350.2 50.000 106 43 1 45 140 5 110 1.58e-29 112
Msa1342760 AT3G47600.2 53.684 95 40 1 24 118 22 112 1.29e-28 114
Msa1342760 AT3G46130.3 62.667 75 28 0 44 118 9 83 1.55e-28 111
Msa1342760 AT1G22640.3 62.162 74 28 0 58 131 1 74 1.98e-28 110
Msa1342760 AT3G46130.4 63.514 74 27 0 45 118 20 93 4.09e-28 110
Msa1342760 AT5G59780.2 63.514 74 27 0 45 118 20 93 4.44e-28 109
Msa1342760 AT3G53200.2 64.789 71 25 0 45 115 9 79 1.16e-27 108
Msa1342760 AT5G58850.1 37.725 167 85 6 12 163 103 265 4.25e-27 111
Msa1342760 AT1G18960.1 43.802 121 61 4 14 132 10 125 5.17e-27 109
Msa1342760 AT4G37260.1 51.852 108 49 2 14 120 13 118 6.99e-27 109
Msa1342760 AT3G27785.1 45.370 108 56 2 9 115 184 289 7.48e-27 110
Msa1342760 AT5G40360.1 43.519 108 59 2 9 116 153 258 2.24e-26 108
Msa1342760 AT5G11050.1 44.660 103 54 2 14 115 105 205 4.87e-26 108
Msa1342760 AT4G18770.1 44.954 109 57 2 9 116 212 318 5.77e-26 108
Msa1342760 AT5G02320.1 47.664 107 53 2 11 116 124 228 1.67e-25 108
Msa1342760 AT5G02320.2 47.664 107 53 2 11 116 124 228 1.67e-25 108
Msa1342760 AT5G02320.3 47.664 107 53 2 11 116 64 168 1.69e-25 107
Msa1342760 AT2G23290.1 51.456 103 47 2 14 115 13 113 1.79e-25 105
Msa1342760 AT1G71030.2 55.844 77 34 0 51 127 5 81 2.15e-25 101
Msa1342760 AT3G09230.1 50.000 104 49 2 14 116 55 156 2.61e-25 106
Msa1342760 AT1G71030.1 55.844 77 34 0 51 127 19 95 2.67e-25 101
Msa1342760 AT5G67300.1 49.515 103 49 2 14 115 6 106 2.90e-25 104
Msa1342760 AT2G39880.1 52.427 103 46 2 14 115 50 150 3.96e-25 105
Msa1342760 AT3G09370.1 48.571 105 51 2 12 115 128 230 4.74e-25 106
Msa1342760 AT3G09370.2 48.571 105 51 2 12 115 133 235 5.42e-25 106
Msa1342760 AT3G09370.3 48.571 105 51 2 12 115 141 243 8.83e-25 105
Msa1342760 AT5G11510.3 46.729 107 54 2 11 116 78 182 9.41e-25 106
Msa1342760 AT5G11510.1 46.729 107 54 2 11 116 78 182 9.41e-25 106
Msa1342760 AT5G11510.4 46.729 107 54 2 11 116 78 182 9.41e-25 106
Msa1342760 AT3G55730.1 52.427 103 46 2 14 115 56 156 1.07e-24 104
Msa1342760 AT5G11510.2 46.729 107 54 2 11 116 78 182 1.38e-24 105
Msa1342760 AT1G17950.1 45.283 106 55 2 14 118 5 108 1.47e-24 101
Msa1342760 AT1G73410.1 45.794 107 55 2 14 119 6 110 1.48e-24 100
Msa1342760 AT3G50060.1 43.651 126 64 4 14 138 6 125 1.75e-24 102
Msa1342760 AT5G11510.5 46.729 107 54 2 11 116 78 182 1.75e-24 105
Msa1342760 AT3G23250.2 68.333 60 19 0 58 117 1 60 2.84e-24 99.8
Msa1342760 AT1G69560.1 41.441 111 62 2 9 118 102 210 3.27e-24 102
Msa1342760 AT1G69560.2 41.441 111 62 2 9 118 118 226 4.01e-24 102
Msa1342760 AT1G73410.2 45.794 107 55 2 14 119 6 110 6.20e-24 98.2
Msa1342760 AT1G26780.1 42.593 108 59 2 12 118 96 201 1.58e-23 99.0
Msa1342760 AT1G26780.2 42.593 108 59 2 12 118 96 201 2.60e-23 100
Msa1342760 AT4G32730.5 44.860 107 56 2 11 116 84 188 2.82e-23 102
Msa1342760 AT4G32730.4 44.860 107 56 2 11 116 84 188 2.82e-23 102
Msa1342760 AT4G32730.3 44.860 107 56 2 11 116 84 188 2.82e-23 102
Msa1342760 AT4G32730.2 44.860 107 56 2 11 116 84 188 2.82e-23 102
Msa1342760 AT4G32730.1 44.860 107 56 2 11 116 84 188 2.90e-23 102
Msa1342760 AT1G66380.3 58.442 77 32 0 39 115 2 78 2.85e-22 90.9
Msa1342760 AT2G25230.1 41.593 113 63 2 9 120 21 131 4.46e-22 94.0
Msa1342760 AT5G17800.1 40.566 106 62 1 14 119 93 197 1.31e-21 94.7
Msa1342760 AT4G33450.1 38.739 111 65 2 9 118 14 122 1.45e-21 93.2
Msa1342760 AT5G14750.4 62.712 59 22 0 58 116 1 59 4.45e-21 88.6
Msa1342760 AT5G14750.2 62.712 59 22 0 58 116 1 59 4.45e-21 88.6
Msa1342760 AT1G66380.2 54.217 83 38 0 10 92 6 88 8.49e-21 87.0
Msa1342760 AT3G29020.1 38.679 106 62 2 14 118 65 168 1.17e-20 90.1
Msa1342760 AT3G29020.2 38.679 106 62 2 14 118 67 170 1.35e-20 91.3
Msa1342760 AT2G02820.3 37.815 119 72 2 4 121 19 136 5.36e-19 87.4
Msa1342760 AT2G02820.1 37.815 119 72 2 4 121 19 136 5.38e-19 88.6
Msa1342760 AT4G00540.2 42.342 111 58 3 12 118 101 209 6.15e-19 87.8
Msa1342760 AT2G02820.2 37.815 119 72 2 4 121 19 136 9.06e-19 87.8
Msa1342760 AT4G00540.1 42.342 111 58 3 12 118 99 207 1.23e-18 87.4
Msa1342760 AT5G40430.1 38.053 113 66 3 9 120 49 158 3.16e-18 84.0
Msa1342760 AT1G14350.2 40.000 105 62 1 17 121 28 131 3.55e-18 85.9
Msa1342760 AT1G14350.1 40.000 105 62 1 17 121 28 131 3.55e-18 85.9
Msa1342760 AT5G61420.1 66.667 54 18 0 81 134 2 55 1.07e-16 80.1
Msa1342760 AT2G37630.1 35.246 122 77 1 17 136 7 128 1.26e-16 80.9
Msa1342760 AT5G39700.1 34.545 110 71 1 9 118 51 159 1.23e-14 72.0
Msa1342760 AT1G74430.2 70.732 41 12 0 88 128 19 59 1.73e-14 72.0
Msa1342760 AT4G28110.2 73.171 41 11 0 88 128 4 44 3.89e-14 70.9
Msa1342760 AT5G59780.1 60.870 46 18 0 73 118 4 49 1.66e-13 68.6
Msa1342760 AT3G46130.2 60.870 46 18 0 73 118 4 49 1.94e-13 68.9
Msa1342760 AT5G15310.3 53.731 67 25 1 88 154 9 69 2.20e-13 69.7
Msa1342760 AT1G14350.3 43.939 66 37 0 56 121 23 88 2.12e-12 68.2
Msa1342760 AT1G14350.4 43.939 66 37 0 56 121 23 88 2.12e-12 68.2
Msa1342760 AT1G22640.2 61.364 44 17 0 88 131 16 59 2.15e-12 65.5
Msa1342760 AT5G14340.2 55.556 45 20 0 88 132 10 54 2.32e-12 65.5
Msa1342760 AT4G25560.2 61.224 49 19 0 71 119 3 51 2.92e-12 65.9
Msa1342760 AT3G18100.1 35.417 96 61 1 13 108 545 639 5.69e-11 64.7
Msa1342760 AT3G18100.3 35.417 96 61 1 13 108 497 591 7.28e-11 64.3
Msa1342760 AT3G18100.4 35.417 96 61 1 13 108 384 478 7.81e-11 63.9
Msa1342760 AT3G28910.2 50.943 53 24 1 77 129 1 51 8.56e-11 62.0
Msa1342760 AT3G18100.2 35.417 96 61 1 13 108 332 426 9.90e-11 63.5

Find 95 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGTTATGAAACCTGTTTC+TGG 0.187715 tig0006028:-10225 None:intergenic
AAATAAAATGGCAGCTTGAT+AGG 0.252151 tig0006028:-8822 None:intergenic
TCTTTCCAGAACTTGAACTA+TGG 0.254408 tig0006028:+9865 Msa1342760:CDS
ATCTCATTGTCTGTTCTTCC+TGG 0.281887 tig0006028:-9541 None:intergenic
GAATAAGGTTGTTTCCAATT+AGG 0.285060 tig0006028:+10610 Msa1342760:three_prime_UTR
CCTCGGACGGAGTTCATAAC+TGG 0.293507 tig0006028:+10061 Msa1342760:CDS
AGTTTCCACGTAGGTTTCTT+TGG 0.308461 tig0006028:+8915 Msa1342760:five_prime_UTR
TGATAGGGAATTGAATAAAT+AGG 0.311045 tig0006028:-8806 None:intergenic
ATGTTTGTACCTGCTAGTTT+GGG 0.316790 tig0006028:-9145 None:intergenic
TATGTTTGTACCTGCTAGTT+TGG 0.322284 tig0006028:-9146 None:intergenic
TTGATCCATAGTTCAAGTTC+TGG 0.343300 tig0006028:-9870 None:intergenic
AAAGGTGTGGGAAGAGTTGC+AGG 0.345434 tig0006028:+9264 Msa1342760:CDS
GAGAGTGGTTTGTGAGTGTT+TGG 0.356009 tig0006028:-9619 None:intergenic
GCTACTATTGTTGATCTTTG+AGG 0.360896 tig0006028:-9785 None:intergenic
CATCAAACTCATAACTTCAT+TGG 0.369991 tig0006028:-9710 None:intergenic
TCAACTCACAAACTTTGCTT+TGG 0.382343 tig0006028:-8977 None:intergenic
CCAACATCCATGACCATGTT+TGG 0.389930 tig0006028:-9113 None:intergenic
CCTACAAAAGCTTCTATAGA+AGG 0.393701 tig0006028:+9739 Msa1342760:CDS
ATAAATAGGAAGAGACTTAG+AGG 0.394870 tig0006028:-8792 None:intergenic
TATCAGACACATATACAATA+TGG 0.396343 tig0006028:-10476 None:intergenic
ACATGTTAAGCCAACTGTTT+CGG 0.398547 tig0006028:+10035 Msa1342760:CDS
AGAGGCAATACTTCTGAATA+AGG 0.406447 tig0006028:+10595 Msa1342760:three_prime_UTR
TGCTACCAAACCTGGTATCT+AGG 0.408405 tig0006028:-9828 None:intergenic
GTGAAACAAATAGATGCATT+TGG 0.408858 tig0006028:-9913 None:intergenic
TTCATGCAGTACTTGGTAAC+AGG 0.409516 tig0006028:+9366 Msa1342760:CDS
AATATGGAAGATTTATCAAA+AGG 0.411545 tig0006028:-10460 None:intergenic
AGAAGTTTCTCATCTTCCTC+TGG 0.426768 tig0006028:-9079 None:intergenic
ATTTCCTATATGAACTATAT+AGG 0.429035 tig0006028:+10390 Msa1342760:three_prime_UTR
ATTGAACTTCATGCAGTACT+TGG 0.433082 tig0006028:+9359 Msa1342760:CDS
TTATTCCTAGATACCAGGTT+TGG 0.454673 tig0006028:+9823 Msa1342760:CDS
AAGAAACCTACGTGGAAACT+AGG 0.458669 tig0006028:-8912 None:intergenic
GCCAACTGTTTCGGTTTCCT+CGG 0.459910 tig0006028:+10044 Msa1342760:CDS
GGAAACTAGGGAGGAACGTT+TGG 0.460522 tig0006028:-8899 None:intergenic
TTAGCCTCAGTGTACATTGA+TGG 0.461448 tig0006028:-10201 None:intergenic
TGATACAGAATGGAGCATAT+TGG 0.462241 tig0006028:-9989 None:intergenic
TTGAGGCCTGATTTGAAAAG+AGG 0.464473 tig0006028:+9305 Msa1342760:CDS
ATATGGAAGATTTATCAAAA+GGG 0.464641 tig0006028:-10459 None:intergenic
TAGCCTCAGTGTACATTGAT+GGG 0.467430 tig0006028:-10200 None:intergenic
AGAAGTTAAGGAAAGGACTT+TGG 0.475806 tig0006028:+9053 Msa1342760:CDS
GGAAGAGTTGCAGGTTAAGA+TGG 0.476199 tig0006028:+9273 Msa1342760:CDS
CTGACCTATATAGTTCATAT+AGG 0.476313 tig0006028:-10394 None:intergenic
GAGGAACGTTTGGTGGGGTG+AGG 0.479775 tig0006028:-8889 None:intergenic
CGTTACAAGAAGAAATGAAA+TGG 0.480075 tig0006028:+10133 Msa1342760:CDS
GGTTGATTCTGCATAAGAAA+TGG 0.480248 tig0006028:-10174 None:intergenic
ACTTGAACTGCTACCAAACC+TGG 0.483346 tig0006028:-9836 None:intergenic
ACTGAGGCTAAACCAGAAAC+AGG 0.484680 tig0006028:+10213 Msa1342760:CDS
TTTCTTATGTTTCTGACCAC+AGG 0.485680 tig0006028:+10420 Msa1342760:three_prime_UTR
TGGTATCTAGGAATAATTCA+TGG 0.486504 tig0006028:-9816 None:intergenic
AATAAAATGGCAGCTTGATA+GGG 0.488986 tig0006028:-8821 None:intergenic
TTGAACTATGGATCAAACAT+AGG 0.491185 tig0006028:+9877 Msa1342760:CDS
GCTGCTACAAGCAGAAGTTA+AGG 0.502078 tig0006028:+9041 Msa1342760:CDS
CTGAATTACATTACCAAACA+TGG 0.502718 tig0006028:+9100 Msa1342760:CDS
CAGATGAATCATGTACTAGT+TGG 0.505678 tig0006028:+10244 Msa1342760:CDS
ATTTGTGAAGAAGTTGAAGT+TGG 0.511516 tig0006028:-9937 None:intergenic
CCAAACATGGTCATGGATGT+TGG 0.521644 tig0006028:+9113 Msa1342760:CDS
CATTTCATTTCTTCTTGTAA+CGG 0.527153 tig0006028:-10132 None:intergenic
TTTACAGGTTTGCAAAGGTG+TGG 0.532239 tig0006028:+9251 Msa1342760:intron
GTTGAAGTTGAGAAAATTGA+GGG 0.536490 tig0006028:-10012 None:intergenic
ACTGTTTCGGTTTCCTCGGA+CGG 0.541892 tig0006028:+10048 Msa1342760:CDS
AGTATTGCCTCTATACTTGA+GGG 0.544253 tig0006028:-10584 None:intergenic
CAGATTGCAGCACAATTACC+AGG 0.546616 tig0006028:+9523 Msa1342760:CDS
ATGAATTATTCCTAGATACC+AGG 0.549894 tig0006028:+9818 Msa1342760:CDS
TACATTACCAAACATGGTCA+TGG 0.551080 tig0006028:+9106 Msa1342760:CDS
AAGAAAAGATTGAGACAAAG+TGG 0.551516 tig0006028:+9589 Msa1342760:CDS
AGAAACCTACGTGGAAACTA+GGG 0.552431 tig0006028:-8911 None:intergenic
AGTTCTGTCCCCAAACTAGC+AGG 0.555346 tig0006028:+9136 Msa1342760:CDS
GAAAGAGACAAAGATGGTGA+TGG 0.558970 tig0006028:+10363 Msa1342760:three_prime_UTR
AAGTATTGCCTCTATACTTG+AGG 0.559348 tig0006028:-10585 None:intergenic
AACTAGGGAGGAACGTTTGG+TGG 0.562946 tig0006028:-8896 None:intergenic
AAATTGAGGGTGATACAGAA+TGG 0.566456 tig0006028:-9999 None:intergenic
TGTTGAAGTTGAGAAAATTG+AGG 0.567398 tig0006028:-10013 None:intergenic
TTACAGGTTTGCAAAGGTGT+GGG 0.568173 tig0006028:+9252 Msa1342760:intron
AACATTAACAACACAAACAA+CGG 0.580018 tig0006028:+10102 Msa1342760:CDS
TGAACTATGGATCAAACATA+GGG 0.580769 tig0006028:+9878 Msa1342760:CDS
ACTTTCTGATATATATAGCA+AGG 0.584658 tig0006028:+10296 Msa1342760:CDS
ACTAGGGAGGAACGTTTGGT+GGG 0.600836 tig0006028:-8895 None:intergenic
TCCGAGGAAACCGAAACAGT+TGG 0.603461 tig0006028:-10045 None:intergenic
CTCGGACGGAGTTCATAACT+GGG 0.605268 tig0006028:+10062 Msa1342760:CDS
TAAGATGGATAAATTACTTG+AGG 0.605702 tig0006028:+9288 Msa1342760:CDS
AGCCTCAGTGTACATTGATG+GGG 0.607267 tig0006028:-10199 None:intergenic
GAGGTAGTAGAAACTTCTAG+AGG 0.610829 tig0006028:-9766 None:intergenic
TAGTCTGAAAGAGACAAAGA+TGG 0.621296 tig0006028:+10357 Msa1342760:exon
CACTCACAAACCACTCTCTG+AGG 0.631167 tig0006028:+9624 Msa1342760:CDS
AGGTAGTAGAAACTTCTAGA+GGG 0.636573 tig0006028:-9765 None:intergenic
CTAGGGAGGAACGTTTGGTG+GGG 0.638225 tig0006028:-8894 None:intergenic
TACAAGCAGAAGTTAAGGAA+AGG 0.639660 tig0006028:+9046 Msa1342760:CDS
CCAGTTATGAACTCCGTCCG+AGG 0.643154 tig0006028:-10061 None:intergenic
TGTTTGTACCTGCTAGTTTG+GGG 0.646582 tig0006028:-9144 None:intergenic
GAAAGGACTTTGGTCTCCAG+AGG 0.652425 tig0006028:+9063 Msa1342760:CDS
TCAGTGTACATTGATGGGGA+AGG 0.652779 tig0006028:-10195 None:intergenic
AACCTACGTGGAAACTAGGG+AGG 0.693747 tig0006028:-8908 None:intergenic
AAATTTACAGCACACACCTG+TGG 0.698981 tig0006028:-10436 None:intergenic
TTCCTCCCTAGTTTCCACGT+AGG 0.713118 tig0006028:+8906 Msa1342760:five_prime_UTR
TCTGTCCAAAGAAACCTACG+TGG 0.753225 tig0006028:-8920 None:intergenic
TTCCCCATCAATGTACACTG+AGG 0.775584 tig0006028:+10197 Msa1342760:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATAAATTTAATCTTTTAC+AGG + tig0006028:9236-9255 Msa1342760:intron 10.0%
!!! ATTTTTTTATACTATAGTTT+TGG + tig0006028:9451-9470 Msa1342760:intron 10.0%
!!! ATATAAATTTAATCTTTTAC+AGG + tig0006028:9236-9255 Msa1342760:intron 10.0%
!!! ATTTTTTTATACTATAGTTT+TGG + tig0006028:9451-9470 Msa1342760:intron 10.0%
!!! CTGAAAAGTAATATTTTTTT+TGG - tig0006028:10502-10521 None:intergenic 15.0%
!!! CTGAAAAGTAATATTTTTTT+TGG - tig0006028:10502-10521 None:intergenic 15.0%
!!! GCAAGTTGAAAAAAATAAAA+TGG - tig0006028:8837-8856 None:intergenic 20.0%
!!! CTTTTAATTAACATACACAT+GGG + tig0006028:9007-9026 Msa1342760:exon 20.0%
!! ACAATGAGATTAAAAATCTA+TGG + tig0006028:9554-9573 Msa1342760:CDS 20.0%
!! ATTTCCTATATGAACTATAT+AGG + tig0006028:10390-10409 Msa1342760:three_prime_UTR 20.0%
!! ATATGGAAGATTTATCAAAA+GGG - tig0006028:10462-10481 None:intergenic 20.0%
!! AATATGGAAGATTTATCAAA+AGG - tig0006028:10463-10482 None:intergenic 20.0%
!!! ATATATTTTTCAAGCCTAAT+TGG - tig0006028:10627-10646 None:intergenic 20.0%
!!! GCAAGTTGAAAAAAATAAAA+TGG - tig0006028:8837-8856 None:intergenic 20.0%
!!! CTTTTAATTAACATACACAT+GGG + tig0006028:9007-9026 Msa1342760:exon 20.0%
!! ACAATGAGATTAAAAATCTA+TGG + tig0006028:9554-9573 Msa1342760:CDS 20.0%
!! ATTTCCTATATGAACTATAT+AGG + tig0006028:10390-10409 Msa1342760:three_prime_UTR 20.0%
!! ATATGGAAGATTTATCAAAA+GGG - tig0006028:10462-10481 None:intergenic 20.0%
!! AATATGGAAGATTTATCAAA+AGG - tig0006028:10463-10482 None:intergenic 20.0%
!!! ATATATTTTTCAAGCCTAAT+TGG - tig0006028:10627-10646 None:intergenic 20.0%
! TGATAGGGAATTGAATAAAT+AGG - tig0006028:8809-8828 None:intergenic 25.0%
!!! GCTTTTAATTAACATACACA+TGG + tig0006028:9006-9025 Msa1342760:exon 25.0%
! TAAGATGGATAAATTACTTG+AGG + tig0006028:9288-9307 Msa1342760:CDS 25.0%
!!! GTTTTGGTTTAATTATGTGA+TGG + tig0006028:9467-9486 Msa1342760:intron 25.0%
! AACATTAACAACACAAACAA+CGG + tig0006028:10102-10121 Msa1342760:CDS 25.0%
! CATTTCATTTCTTCTTGTAA+CGG - tig0006028:10135-10154 None:intergenic 25.0%
! ACTTTCTGATATATATAGCA+AGG + tig0006028:10296-10315 Msa1342760:CDS 25.0%
! TATCAGACACATATACAATA+TGG - tig0006028:10479-10498 None:intergenic 25.0%
! TGATAGGGAATTGAATAAAT+AGG - tig0006028:8809-8828 None:intergenic 25.0%
!!! GCTTTTAATTAACATACACA+TGG + tig0006028:9006-9025 Msa1342760:exon 25.0%
! TAAGATGGATAAATTACTTG+AGG + tig0006028:9288-9307 Msa1342760:CDS 25.0%
!!! GTTTTGGTTTAATTATGTGA+TGG + tig0006028:9467-9486 Msa1342760:intron 25.0%
! AACATTAACAACACAAACAA+CGG + tig0006028:10102-10121 Msa1342760:CDS 25.0%
! CATTTCATTTCTTCTTGTAA+CGG - tig0006028:10135-10154 None:intergenic 25.0%
! ACTTTCTGATATATATAGCA+AGG + tig0006028:10296-10315 Msa1342760:CDS 25.0%
! TATCAGACACATATACAATA+TGG - tig0006028:10479-10498 None:intergenic 25.0%
AATAAAATGGCAGCTTGATA+GGG - tig0006028:8824-8843 None:intergenic 30.0%
AAATAAAATGGCAGCTTGAT+AGG - tig0006028:8825-8844 None:intergenic 30.0%
!! TTTTTCAACTTGCTTGTCTA+AGG + tig0006028:8844-8863 Msa1342760:five_prime_UTR 30.0%
!! TTTTCAACTTGCTTGTCTAA+GGG + tig0006028:8845-8864 Msa1342760:five_prime_UTR 30.0%
CTGAATTACATTACCAAACA+TGG + tig0006028:9100-9119 Msa1342760:CDS 30.0%
! AATCTTTTACAGGTTTGCAA+AGG + tig0006028:9246-9265 Msa1342760:intron 30.0%
!! TGTTGTTGCTTTATATCAGA+TGG + tig0006028:9497-9516 Msa1342760:intron 30.0%
AAGAAAAGATTGAGACAAAG+TGG + tig0006028:9589-9608 Msa1342760:CDS 30.0%
!!! AGCTTTTTGATTGGTTTTGT+TGG - tig0006028:9680-9699 None:intergenic 30.0%
! TGAAACTGAAGCTTTTTGAT+TGG - tig0006028:9689-9708 None:intergenic 30.0%
CATCAAACTCATAACTTCAT+TGG - tig0006028:9713-9732 None:intergenic 30.0%
TGGTATCTAGGAATAATTCA+TGG - tig0006028:9819-9838 None:intergenic 30.0%
ATGAATTATTCCTAGATACC+AGG + tig0006028:9818-9837 Msa1342760:CDS 30.0%
TTGAACTATGGATCAAACAT+AGG + tig0006028:9877-9896 Msa1342760:CDS 30.0%
TGAACTATGGATCAAACATA+GGG + tig0006028:9878-9897 Msa1342760:CDS 30.0%
GTGAAACAAATAGATGCATT+TGG - tig0006028:9916-9935 None:intergenic 30.0%
ATTTGTGAAGAAGTTGAAGT+TGG - tig0006028:9940-9959 None:intergenic 30.0%
GTTGAAGTTGAGAAAATTGA+GGG - tig0006028:10015-10034 None:intergenic 30.0%
TGTTGAAGTTGAGAAAATTG+AGG - tig0006028:10016-10035 None:intergenic 30.0%
CGTTACAAGAAGAAATGAAA+TGG + tig0006028:10133-10152 Msa1342760:CDS 30.0%
CTGACCTATATAGTTCATAT+AGG - tig0006028:10397-10416 None:intergenic 30.0%
ACTTGAGGGAAAAAATGATT+TGG - tig0006028:10573-10592 None:intergenic 30.0%
!!! ATTTTTTCCCTCAAGTATAG+AGG + tig0006028:10577-10596 Msa1342760:three_prime_UTR 30.0%
! GAATAAGGTTGTTTCCAATT+AGG + tig0006028:10610-10629 Msa1342760:three_prime_UTR 30.0%
AATAAAATGGCAGCTTGATA+GGG - tig0006028:8824-8843 None:intergenic 30.0%
AAATAAAATGGCAGCTTGAT+AGG - tig0006028:8825-8844 None:intergenic 30.0%
!! TTTTTCAACTTGCTTGTCTA+AGG + tig0006028:8844-8863 Msa1342760:five_prime_UTR 30.0%
!! TTTTCAACTTGCTTGTCTAA+GGG + tig0006028:8845-8864 Msa1342760:five_prime_UTR 30.0%
CTGAATTACATTACCAAACA+TGG + tig0006028:9100-9119 Msa1342760:CDS 30.0%
! AATCTTTTACAGGTTTGCAA+AGG + tig0006028:9246-9265 Msa1342760:intron 30.0%
!! TGTTGTTGCTTTATATCAGA+TGG + tig0006028:9497-9516 Msa1342760:intron 30.0%
AAGAAAAGATTGAGACAAAG+TGG + tig0006028:9589-9608 Msa1342760:CDS 30.0%
!!! AGCTTTTTGATTGGTTTTGT+TGG - tig0006028:9680-9699 None:intergenic 30.0%
! TGAAACTGAAGCTTTTTGAT+TGG - tig0006028:9689-9708 None:intergenic 30.0%
CATCAAACTCATAACTTCAT+TGG - tig0006028:9713-9732 None:intergenic 30.0%
TGGTATCTAGGAATAATTCA+TGG - tig0006028:9819-9838 None:intergenic 30.0%
ATGAATTATTCCTAGATACC+AGG + tig0006028:9818-9837 Msa1342760:CDS 30.0%
TTGAACTATGGATCAAACAT+AGG + tig0006028:9877-9896 Msa1342760:CDS 30.0%
TGAACTATGGATCAAACATA+GGG + tig0006028:9878-9897 Msa1342760:CDS 30.0%
GTGAAACAAATAGATGCATT+TGG - tig0006028:9916-9935 None:intergenic 30.0%
ATTTGTGAAGAAGTTGAAGT+TGG - tig0006028:9940-9959 None:intergenic 30.0%
GTTGAAGTTGAGAAAATTGA+GGG - tig0006028:10015-10034 None:intergenic 30.0%
TGTTGAAGTTGAGAAAATTG+AGG - tig0006028:10016-10035 None:intergenic 30.0%
CGTTACAAGAAGAAATGAAA+TGG + tig0006028:10133-10152 Msa1342760:CDS 30.0%
CTGACCTATATAGTTCATAT+AGG - tig0006028:10397-10416 None:intergenic 30.0%
ACTTGAGGGAAAAAATGATT+TGG - tig0006028:10573-10592 None:intergenic 30.0%
!!! ATTTTTTCCCTCAAGTATAG+AGG + tig0006028:10577-10596 Msa1342760:three_prime_UTR 30.0%
! GAATAAGGTTGTTTCCAATT+AGG + tig0006028:10610-10629 Msa1342760:three_prime_UTR 30.0%
TCAACTCACAAACTTTGCTT+TGG - tig0006028:8980-8999 None:intergenic 35.0%
TACAAGCAGAAGTTAAGGAA+AGG + tig0006028:9046-9065 Msa1342760:CDS 35.0%
AGAAGTTAAGGAAAGGACTT+TGG + tig0006028:9053-9072 Msa1342760:CDS 35.0%
TACATTACCAAACATGGTCA+TGG + tig0006028:9106-9125 Msa1342760:CDS 35.0%
! ATGTTTGTACCTGCTAGTTT+GGG - tig0006028:9148-9167 None:intergenic 35.0%
TATGTTTGTACCTGCTAGTT+TGG - tig0006028:9149-9168 None:intergenic 35.0%
! AATGCTCCTCTTTTCAAATC+AGG - tig0006028:9314-9333 None:intergenic 35.0%
ATTGAACTTCATGCAGTACT+TGG + tig0006028:9359-9378 Msa1342760:CDS 35.0%
! CCTTCTATAGAAGCTTTTGT+AGG - tig0006028:9742-9761 None:intergenic 35.0%
CCTACAAAAGCTTCTATAGA+AGG + tig0006028:9739-9758 Msa1342760:CDS 35.0%
AGGTAGTAGAAACTTCTAGA+GGG - tig0006028:9768-9787 None:intergenic 35.0%
GCTACTATTGTTGATCTTTG+AGG - tig0006028:9788-9807 None:intergenic 35.0%
TTATTCCTAGATACCAGGTT+TGG + tig0006028:9823-9842 Msa1342760:CDS 35.0%
TCTTTCCAGAACTTGAACTA+TGG + tig0006028:9865-9884 Msa1342760:CDS 35.0%
! TTGATCCATAGTTCAAGTTC+TGG - tig0006028:9873-9892 None:intergenic 35.0%
TGATACAGAATGGAGCATAT+TGG - tig0006028:9992-10011 None:intergenic 35.0%
AAATTGAGGGTGATACAGAA+TGG - tig0006028:10002-10021 None:intergenic 35.0%
ACATGTTAAGCCAACTGTTT+CGG + tig0006028:10035-10054 Msa1342760:CDS 35.0%
! GGTTGATTCTGCATAAGAAA+TGG - tig0006028:10177-10196 None:intergenic 35.0%
TCTGTTATGAAACCTGTTTC+TGG - tig0006028:10228-10247 None:intergenic 35.0%
CAGATGAATCATGTACTAGT+TGG + tig0006028:10244-10263 Msa1342760:CDS 35.0%
TAGTCTGAAAGAGACAAAGA+TGG + tig0006028:10357-10376 Msa1342760:exon 35.0%
! TTTCTTATGTTTCTGACCAC+AGG + tig0006028:10420-10439 Msa1342760:three_prime_UTR 35.0%
AGTATTGCCTCTATACTTGA+GGG - tig0006028:10587-10606 None:intergenic 35.0%
! AAGTATTGCCTCTATACTTG+AGG - tig0006028:10588-10607 None:intergenic 35.0%
AGAGGCAATACTTCTGAATA+AGG + tig0006028:10595-10614 Msa1342760:three_prime_UTR 35.0%
TCAACTCACAAACTTTGCTT+TGG - tig0006028:8980-8999 None:intergenic 35.0%
TACAAGCAGAAGTTAAGGAA+AGG + tig0006028:9046-9065 Msa1342760:CDS 35.0%
AGAAGTTAAGGAAAGGACTT+TGG + tig0006028:9053-9072 Msa1342760:CDS 35.0%
TACATTACCAAACATGGTCA+TGG + tig0006028:9106-9125 Msa1342760:CDS 35.0%
! ATGTTTGTACCTGCTAGTTT+GGG - tig0006028:9148-9167 None:intergenic 35.0%
TATGTTTGTACCTGCTAGTT+TGG - tig0006028:9149-9168 None:intergenic 35.0%
! AATGCTCCTCTTTTCAAATC+AGG - tig0006028:9314-9333 None:intergenic 35.0%
ATTGAACTTCATGCAGTACT+TGG + tig0006028:9359-9378 Msa1342760:CDS 35.0%
! CCTTCTATAGAAGCTTTTGT+AGG - tig0006028:9742-9761 None:intergenic 35.0%
CCTACAAAAGCTTCTATAGA+AGG + tig0006028:9739-9758 Msa1342760:CDS 35.0%
AGGTAGTAGAAACTTCTAGA+GGG - tig0006028:9768-9787 None:intergenic 35.0%
GCTACTATTGTTGATCTTTG+AGG - tig0006028:9788-9807 None:intergenic 35.0%
TTATTCCTAGATACCAGGTT+TGG + tig0006028:9823-9842 Msa1342760:CDS 35.0%
TCTTTCCAGAACTTGAACTA+TGG + tig0006028:9865-9884 Msa1342760:CDS 35.0%
! TTGATCCATAGTTCAAGTTC+TGG - tig0006028:9873-9892 None:intergenic 35.0%
TGATACAGAATGGAGCATAT+TGG - tig0006028:9992-10011 None:intergenic 35.0%
AAATTGAGGGTGATACAGAA+TGG - tig0006028:10002-10021 None:intergenic 35.0%
ACATGTTAAGCCAACTGTTT+CGG + tig0006028:10035-10054 Msa1342760:CDS 35.0%
! GGTTGATTCTGCATAAGAAA+TGG - tig0006028:10177-10196 None:intergenic 35.0%
TCTGTTATGAAACCTGTTTC+TGG - tig0006028:10228-10247 None:intergenic 35.0%
CAGATGAATCATGTACTAGT+TGG + tig0006028:10244-10263 Msa1342760:CDS 35.0%
TAGTCTGAAAGAGACAAAGA+TGG + tig0006028:10357-10376 Msa1342760:exon 35.0%
! TTTCTTATGTTTCTGACCAC+AGG + tig0006028:10420-10439 Msa1342760:three_prime_UTR 35.0%
AGTATTGCCTCTATACTTGA+GGG - tig0006028:10587-10606 None:intergenic 35.0%
! AAGTATTGCCTCTATACTTG+AGG - tig0006028:10588-10607 None:intergenic 35.0%
AGAGGCAATACTTCTGAATA+AGG + tig0006028:10595-10614 Msa1342760:three_prime_UTR 35.0%
AGAAACCTACGTGGAAACTA+GGG - tig0006028:8914-8933 None:intergenic 40.0%
AAGAAACCTACGTGGAAACT+AGG - tig0006028:8915-8934 None:intergenic 40.0%
AGTTTCCACGTAGGTTTCTT+TGG + tig0006028:8915-8934 Msa1342760:five_prime_UTR 40.0%
AGAAGTTTCTCATCTTCCTC+TGG - tig0006028:9082-9101 None:intergenic 40.0%
! TGTTTGTACCTGCTAGTTTG+GGG - tig0006028:9147-9166 None:intergenic 40.0%
TTTACAGGTTTGCAAAGGTG+TGG + tig0006028:9251-9270 Msa1342760:intron 40.0%
! TTACAGGTTTGCAAAGGTGT+GGG + tig0006028:9252-9271 Msa1342760:intron 40.0%
! TTGAGGCCTGATTTGAAAAG+AGG + tig0006028:9305-9324 Msa1342760:CDS 40.0%
! TTCATGCAGTACTTGGTAAC+AGG + tig0006028:9366-9385 Msa1342760:CDS 40.0%
ATCTCATTGTCTGTTCTTCC+TGG - tig0006028:9544-9563 None:intergenic 40.0%
! TCATTTTCAACCTCAGAGAG+TGG - tig0006028:9637-9656 None:intergenic 40.0%
GAGGTAGTAGAAACTTCTAG+AGG - tig0006028:9769-9788 None:intergenic 40.0%
TAGCCTCAGTGTACATTGAT+GGG - tig0006028:10203-10222 None:intergenic 40.0%
TTAGCCTCAGTGTACATTGA+TGG - tig0006028:10204-10223 None:intergenic 40.0%
! CAGAGATTTTCAGTGGCTTT+TGG + tig0006028:10324-10343 Msa1342760:CDS 40.0%
GAAAGAGACAAAGATGGTGA+TGG + tig0006028:10363-10382 Msa1342760:three_prime_UTR 40.0%
AAATTTACAGCACACACCTG+TGG - tig0006028:10439-10458 None:intergenic 40.0%
AGAAACCTACGTGGAAACTA+GGG - tig0006028:8914-8933 None:intergenic 40.0%
AAGAAACCTACGTGGAAACT+AGG - tig0006028:8915-8934 None:intergenic 40.0%
AGTTTCCACGTAGGTTTCTT+TGG + tig0006028:8915-8934 Msa1342760:five_prime_UTR 40.0%
AGAAGTTTCTCATCTTCCTC+TGG - tig0006028:9082-9101 None:intergenic 40.0%
! TGTTTGTACCTGCTAGTTTG+GGG - tig0006028:9147-9166 None:intergenic 40.0%
TTTACAGGTTTGCAAAGGTG+TGG + tig0006028:9251-9270 Msa1342760:intron 40.0%
! TTACAGGTTTGCAAAGGTGT+GGG + tig0006028:9252-9271 Msa1342760:intron 40.0%
! TTGAGGCCTGATTTGAAAAG+AGG + tig0006028:9305-9324 Msa1342760:CDS 40.0%
! TTCATGCAGTACTTGGTAAC+AGG + tig0006028:9366-9385 Msa1342760:CDS 40.0%
ATCTCATTGTCTGTTCTTCC+TGG - tig0006028:9544-9563 None:intergenic 40.0%
! TCATTTTCAACCTCAGAGAG+TGG - tig0006028:9637-9656 None:intergenic 40.0%
GAGGTAGTAGAAACTTCTAG+AGG - tig0006028:9769-9788 None:intergenic 40.0%
TAGCCTCAGTGTACATTGAT+GGG - tig0006028:10203-10222 None:intergenic 40.0%
TTAGCCTCAGTGTACATTGA+TGG - tig0006028:10204-10223 None:intergenic 40.0%
! CAGAGATTTTCAGTGGCTTT+TGG + tig0006028:10324-10343 Msa1342760:CDS 40.0%
GAAAGAGACAAAGATGGTGA+TGG + tig0006028:10363-10382 Msa1342760:three_prime_UTR 40.0%
AAATTTACAGCACACACCTG+TGG - tig0006028:10439-10458 None:intergenic 40.0%
TCTGTCCAAAGAAACCTACG+TGG - tig0006028:8923-8942 None:intergenic 45.0%
GCTGCTACAAGCAGAAGTTA+AGG + tig0006028:9041-9060 Msa1342760:CDS 45.0%
CCAACATCCATGACCATGTT+TGG - tig0006028:9116-9135 None:intergenic 45.0%
CCAAACATGGTCATGGATGT+TGG + tig0006028:9113-9132 Msa1342760:CDS 45.0%
GGAAGAGTTGCAGGTTAAGA+TGG + tig0006028:9273-9292 Msa1342760:CDS 45.0%
CAGATTGCAGCACAATTACC+AGG + tig0006028:9523-9542 Msa1342760:CDS 45.0%
! GAGAGTGGTTTGTGAGTGTT+TGG - tig0006028:9622-9641 None:intergenic 45.0%
TGCTACCAAACCTGGTATCT+AGG - tig0006028:9831-9850 None:intergenic 45.0%
ACTTGAACTGCTACCAAACC+TGG - tig0006028:9839-9858 None:intergenic 45.0%
TCAGTGTACATTGATGGGGA+AGG - tig0006028:10198-10217 None:intergenic 45.0%
TTCCCCATCAATGTACACTG+AGG + tig0006028:10197-10216 Msa1342760:CDS 45.0%
AGCCTCAGTGTACATTGATG+GGG - tig0006028:10202-10221 None:intergenic 45.0%
ACTGAGGCTAAACCAGAAAC+AGG + tig0006028:10213-10232 Msa1342760:CDS 45.0%
! GGATCTGCAGAGATTTTCAG+TGG + tig0006028:10317-10336 Msa1342760:CDS 45.0%
TCTGTCCAAAGAAACCTACG+TGG - tig0006028:8923-8942 None:intergenic 45.0%
GCTGCTACAAGCAGAAGTTA+AGG + tig0006028:9041-9060 Msa1342760:CDS 45.0%
CCAACATCCATGACCATGTT+TGG - tig0006028:9116-9135 None:intergenic 45.0%
CCAAACATGGTCATGGATGT+TGG + tig0006028:9113-9132 Msa1342760:CDS 45.0%
GGAAGAGTTGCAGGTTAAGA+TGG + tig0006028:9273-9292 Msa1342760:CDS 45.0%
CAGATTGCAGCACAATTACC+AGG + tig0006028:9523-9542 Msa1342760:CDS 45.0%
! GAGAGTGGTTTGTGAGTGTT+TGG - tig0006028:9622-9641 None:intergenic 45.0%
TGCTACCAAACCTGGTATCT+AGG - tig0006028:9831-9850 None:intergenic 45.0%
ACTTGAACTGCTACCAAACC+TGG - tig0006028:9839-9858 None:intergenic 45.0%
TCAGTGTACATTGATGGGGA+AGG - tig0006028:10198-10217 None:intergenic 45.0%
TTCCCCATCAATGTACACTG+AGG + tig0006028:10197-10216 Msa1342760:CDS 45.0%
AGCCTCAGTGTACATTGATG+GGG - tig0006028:10202-10221 None:intergenic 45.0%
ACTGAGGCTAAACCAGAAAC+AGG + tig0006028:10213-10232 Msa1342760:CDS 45.0%
! GGATCTGCAGAGATTTTCAG+TGG + tig0006028:10317-10336 Msa1342760:CDS 45.0%
ACTAGGGAGGAACGTTTGGT+GGG - tig0006028:8898-8917 None:intergenic 50.0%
AACTAGGGAGGAACGTTTGG+TGG - tig0006028:8899-8918 None:intergenic 50.0%
GGAAACTAGGGAGGAACGTT+TGG - tig0006028:8902-8921 None:intergenic 50.0%
TTCCTCCCTAGTTTCCACGT+AGG + tig0006028:8906-8925 Msa1342760:five_prime_UTR 50.0%
AACCTACGTGGAAACTAGGG+AGG - tig0006028:8911-8930 None:intergenic 50.0%
GAAAGGACTTTGGTCTCCAG+AGG + tig0006028:9063-9082 Msa1342760:CDS 50.0%
AGTTCTGTCCCCAAACTAGC+AGG + tig0006028:9136-9155 Msa1342760:CDS 50.0%
! AAAGGTGTGGGAAGAGTTGC+AGG + tig0006028:9264-9283 Msa1342760:CDS 50.0%
CACTCACAAACCACTCTCTG+AGG + tig0006028:9624-9643 Msa1342760:CDS 50.0%
GCCAACTGTTTCGGTTTCCT+CGG + tig0006028:10044-10063 Msa1342760:CDS 50.0%
TCCGAGGAAACCGAAACAGT+TGG - tig0006028:10048-10067 None:intergenic 50.0%
ACTGTTTCGGTTTCCTCGGA+CGG + tig0006028:10048-10067 Msa1342760:CDS 50.0%
CTCGGACGGAGTTCATAACT+GGG + tig0006028:10062-10081 Msa1342760:CDS 50.0%
ACTAGGGAGGAACGTTTGGT+GGG - tig0006028:8898-8917 None:intergenic 50.0%
AACTAGGGAGGAACGTTTGG+TGG - tig0006028:8899-8918 None:intergenic 50.0%
GGAAACTAGGGAGGAACGTT+TGG - tig0006028:8902-8921 None:intergenic 50.0%
TTCCTCCCTAGTTTCCACGT+AGG + tig0006028:8906-8925 Msa1342760:five_prime_UTR 50.0%
AACCTACGTGGAAACTAGGG+AGG - tig0006028:8911-8930 None:intergenic 50.0%
GAAAGGACTTTGGTCTCCAG+AGG + tig0006028:9063-9082 Msa1342760:CDS 50.0%
AGTTCTGTCCCCAAACTAGC+AGG + tig0006028:9136-9155 Msa1342760:CDS 50.0%
! AAAGGTGTGGGAAGAGTTGC+AGG + tig0006028:9264-9283 Msa1342760:CDS 50.0%
CACTCACAAACCACTCTCTG+AGG + tig0006028:9624-9643 Msa1342760:CDS 50.0%
GCCAACTGTTTCGGTTTCCT+CGG + tig0006028:10044-10063 Msa1342760:CDS 50.0%
TCCGAGGAAACCGAAACAGT+TGG - tig0006028:10048-10067 None:intergenic 50.0%
ACTGTTTCGGTTTCCTCGGA+CGG + tig0006028:10048-10067 Msa1342760:CDS 50.0%
CTCGGACGGAGTTCATAACT+GGG + tig0006028:10062-10081 Msa1342760:CDS 50.0%
! CTAGGGAGGAACGTTTGGTG+GGG - tig0006028:8897-8916 None:intergenic 55.0%
CCAGTTATGAACTCCGTCCG+AGG - tig0006028:10064-10083 None:intergenic 55.0%
CCTCGGACGGAGTTCATAAC+TGG + tig0006028:10061-10080 Msa1342760:CDS 55.0%
! CTAGGGAGGAACGTTTGGTG+GGG - tig0006028:8897-8916 None:intergenic 55.0%
CCAGTTATGAACTCCGTCCG+AGG - tig0006028:10064-10083 None:intergenic 55.0%
CCTCGGACGGAGTTCATAAC+TGG + tig0006028:10061-10080 Msa1342760:CDS 55.0%
! GAGGAACGTTTGGTGGGGTG+AGG - tig0006028:8892-8911 None:intergenic 60.0%
! GAGGAACGTTTGGTGGGGTG+AGG - tig0006028:8892-8911 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0006028 gene 8794 10698 8794 ID=Msa1342760;Name=Msa1342760
tig0006028 mRNA 8794 10698 8794 ID=Msa1342760-mRNA-1;Parent=Msa1342760;Name=Msa1342760-mRNA-1;_AED=0.02;_eAED=0.02;_QI=231|1|1|1|1|1|3|339|368
tig0006028 exon 8794 9157 8794 ID=Msa1342760-mRNA-1:exon:3745;Parent=Msa1342760-mRNA-1
tig0006028 exon 9258 9387 9258 ID=Msa1342760-mRNA-1:exon:3746;Parent=Msa1342760-mRNA-1
tig0006028 exon 9516 10698 9516 ID=Msa1342760-mRNA-1:exon:3747;Parent=Msa1342760-mRNA-1
tig0006028 five_prime_UTR 8794 9024 8794 ID=Msa1342760-mRNA-1:five_prime_utr;Parent=Msa1342760-mRNA-1
tig0006028 CDS 9025 9157 9025 ID=Msa1342760-mRNA-1:cds;Parent=Msa1342760-mRNA-1
tig0006028 CDS 9258 9387 9258 ID=Msa1342760-mRNA-1:cds;Parent=Msa1342760-mRNA-1
tig0006028 CDS 9516 10359 9516 ID=Msa1342760-mRNA-1:cds;Parent=Msa1342760-mRNA-1
tig0006028 three_prime_UTR 10360 10698 10360 ID=Msa1342760-mRNA-1:three_prime_utr;Parent=Msa1342760-mRNA-1
Gene Sequence

>Msa1342760

ATGGGAAGACATTCTTGCTGCTACAAGCAGAAGTTAAGGAAAGGACTTTGGTCTCCAGAGGAAGATGAGAAACTTCTGAATTACATTACCAAACATGGTCATGGATGTTGGAGTTCTGTCCCCAAACTAGCAGGTTTGCAAAGGTGTGGGAAGAGTTGCAGGTTAAGATGGATAAATTACTTGAGGCCTGATTTGAAAAGAGGAGCATTCTCACAACAAGAAGAGAATTTGATCATTGAACTTCATGCAGTACTTGGTAACAGATGGTCTCAGATTGCAGCACAATTACCAGGAAGAACAGACAATGAGATTAAAAATCTATGGAATTCATGTCTCAAGAAAAGATTGAGACAAAGTGGCATTGATCCAAACACTCACAAACCACTCTCTGAGGTTGAAAATGACAATGAAAAATCACTCACATCCAACAAAACCAATCAAAAAGCTTCAGTTTCATCCAATGAAGTTATGAGTTTGATGATTGAACCTACAAAAGCTTCTATAGAAGGATACCCTCTAGAAGTTTCTACTACCTCAAAGATCAACAATAGTAGCAGCAGCAGCCATGAATTATTCCTAGATACCAGGTTTGGTAGCAGTTCAAGTTATTTTTCTTTCCAGAACTTGAACTATGGATCAAACATAGGGATTTCTGAAAATCCAAATGCATCTATTTGTTTCACACCAACTTCAACTTCTTCACAAATTATGTCAGATACAAATTCTGTTATAACTTCCAATATGCTCCATTCTGTATCACCCTCAATTTTCTCAACTTCAACACATGTTAAGCCAACTGTTTCGGTTTCCTCGGACGGAGTTCATAACTGGGAAGCAAGTAACTACAACAACATTAACAACACAAACAACGGCGCTTTACCGTTACAAGAAGAAATGAAATGGTCTGAGTATCTTAACACACCATTTCTTATGCAGAATCAACCTTCCCCATCAATGTACACTGAGGCTAAACCAGAAACAGGTTTCATAACAGATGAATCATGTACTAGTTGGCAGCAGCAGCAGCAACAACAAAATTTTCAACTTTCTGATATATATAGCAAGGATCTGCAGAGATTTTCAGTGGCTTTTGGACAAACTATGTAG
Protein sequence

>Msa1342760

MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKRLRQSGIDPNTHKPLSEVENDNEKSLTSNKTNQKASVSSNEVMSLMIEPTKASIEGYPLEVSTTSKINNSSSSSHELFLDTRFGSSSSYFSFQNLNYGSNIGISENPNASICFTPTSTSSQIMSDTNSVITSNMLHSVSPSIFSTSTHVKPTVSVSSDGVHNWEASNYNNINNTNNGALPLQEEMKWSEYLNTPFLMQNQPSPSMYTEAKPETGFITDESCTSWQQQQQQQNFQLSDIYSKDLQRFSVAFGQTM*