AlfalfaGEDB | Msa0827970

M. sativa cultivar zhongmu-4 / Msa0827970

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363
PFAM: PF01535.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0827970	XP_003618141.2	94.937	632	30	2	1	631	1	631	0.0	1225

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0827970	sp\|Q9FND8\|PP409_ARATH	50.000	594	289	6	39	627	10	600	0.0	595

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0827970	G7KPZ4	94.937	632	30	2	1	631	1	631	0.0	1225

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017510	Msa0827970	0.807149	5.819564e-50	-8.615850e-47
Msa0036920	Msa0827970	0.803600	3.226286e-49	-8.615850e-47
Msa0157290	Msa0827970	0.807702	4.441689e-50	-8.615850e-47
Msa0212990	Msa0827970	0.800452	1.431929e-48	-8.615850e-47
Msa0255550	Msa0827970	0.800763	1.237538e-48	-8.615850e-47
Msa0283450	Msa0827970	0.809906	1.501345e-50	-8.615850e-47
Msa0294590	Msa0827970	0.804959	1.681523e-49	-8.615850e-47
Msa0388960	Msa0827970	0.801212	1.001663e-48	-8.615850e-47
Msa0439970	Msa0827970	0.800449	1.434048e-48	-8.615850e-47
Msa0452710	Msa0827970	0.814686	1.357696e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0827970	MtrunA17_Chr6g0449581	94.937	632	30	2	1	631	1	631	0.0	1225
Msa0827970	MtrunA17_Chr1g0162281	28.527	638	426	9	92	707	18	647	4.86e-79	268
Msa0827970	MtrunA17_Chr1g0162281	26.643	563	348	11	191	697	189	742	5.04e-55	201
Msa0827970	MtrunA17_Chr4g0060341	29.197	548	375	8	93	632	29	571	2.12e-74	251
Msa0827970	MtrunA17_Chr4g0060341	30.811	370	231	7	185	546	221	573	2.21e-46	174
Msa0827970	MtrunA17_Chr4g0060341	25.564	399	279	5	305	695	136	524	5.31e-34	137
Msa0827970	MtrunA17_Chr4g0060341	23.248	314	228	5	391	697	114	421	1.28e-17	87.0
Msa0827970	MtrunA17_Chr4g0037841	29.197	548	375	8	93	632	29	571	7.03e-74	249
Msa0827970	MtrunA17_Chr4g0037841	30.811	370	231	7	185	546	221	573	1.84e-46	174
Msa0827970	MtrunA17_Chr4g0037841	25.564	399	279	5	305	695	136	524	4.76e-34	137

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0827970	AT5G40400.2	50.000	594	289	6	39	627	81	671	0.0	595
Msa0827970	AT5G40400.1	50.000	594	289	6	39	627	10	600	0.0	595
Msa0827970	AT5G39710.1	28.506	656	414	12	80	707	30	658	3.07e-79	268
Msa0827970	AT5G39710.1	24.880	623	397	11	122	691	143	747	8.52e-56	204
Msa0827970	AT5G55840.2	27.101	690	468	7	23	707	12	671	4.36e-74	260
Msa0827970	AT5G55840.2	24.070	511	380	4	197	705	306	810	1.39e-41	164
Msa0827970	AT5G55840.2	24.654	434	325	2	193	625	652	1084	7.18e-35	143
Msa0827970	AT5G55840.2	24.351	501	305	6	197	625	551	1049	7.29e-32	133
Msa0827970	AT5G55840.2	22.325	542	342	7	195	698	479	979	1.07e-30	130
Msa0827970	AT5G55840.2	29.787	188	130	2	232	418	902	1088	4.57e-14	76.6

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Find 115 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAATTCTCCCTCATTT+GGG	0.371771	5_3:-69945526	Msa0827970:CDS
AAAAGCTGGATATCTTGATG+TGG	0.731273	5_3:-69943264	Msa0827970:CDS
AAATTAGGTATGGTTGATAA+GGG	0.410372	5_3:-69945199	Msa0827970:CDS
AAGATAAGCTGGTCAAGATA+GGG	0.524215	5_3:-69944007	Msa0827970:CDS
AAGCTAAAACAAGGAATATG+AGG	0.510888	5_3:-69943057	Msa0827970:CDS
ACATGCAAGTACGTTATCCG+AGG	0.620513	5_3:-69943966	Msa0827970:CDS
ACCTGATTTAGAAATAAAGA+GGG	0.605368	5_3:-69944189	Msa0827970:CDS
ACGGCGGCAATGAGCTTGCA+TGG	0.578441	5_3:+69945816	None:intergenic
ACGTATAACACATTGATTAA+TGG	0.246482	5_3:-69944914	Msa0827970:CDS
AGAAAACTTCGTGCCGCAAA+CGG	0.518114	5_3:+69944449	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTGAAAATTGAGTGAGAAA+GGG	+	chr5_3:69943130-69943149	None:intergenic	30.0%
TTGTGAAAATTGAGTGAGAA+AGG	+	chr5_3:69943131-69943150	None:intergenic	30.0%
ATTGGGTTTGAAAATGAGAA+AGG	+	chr5_3:69943314-69943333	None:intergenic	30.0%
AAAACAATTCTCCCTCATTT+GGG	-	chr5_3:69943336-69943355	Msa0827970:intron	30.0%
ATTGAAAAATGTGAGTGATG+AGG	+	chr5_3:69943409-69943428	None:intergenic	30.0%
CAATTCACACAACAATTTCA+TGG	+	chr5_3:69943523-69943542	None:intergenic	30.0%
ATTGTACTGAGGATTGTAAT+TGG	-	chr5_3:69943601-69943620	Msa0827970:intron	30.0%
CAATTACAAGCAACAACATT+AGG	+	chr5_3:69943729-69943748	None:intergenic	30.0%
AGACTTGGAATACATAGAAA+TGG	-	chr5_3:69943816-69943835	Msa0827970:intron	30.0%
TTTAATCAGATGGTTCAAAG+AGG	-	chr5_3:69944116-69944135	Msa0827970:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	69943048	69945836	69943048	ID=Msa0827970;Name=Msa0827970
chr5_3	mRNA	69943048	69945836	69943048	ID=Msa0827970-mRNA-1;Parent=Msa0827970;Name=Msa0827970-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0\|0\|0\|1\|1\|1\|3\|0\|708
chr5_3	exon	69943896	69945836	69943896	ID=Msa0827970-mRNA-1:exon:21934;Parent=Msa0827970-mRNA-1
chr5_3	exon	69943235	69943342	69943235	ID=Msa0827970-mRNA-1:exon:21933;Parent=Msa0827970-mRNA-1
chr5_3	exon	69943048	69943125	69943048	ID=Msa0827970-mRNA-1:exon:21932;Parent=Msa0827970-mRNA-1
chr5_3	CDS	69943896	69945836	69943896	ID=Msa0827970-mRNA-1:cds;Parent=Msa0827970-mRNA-1
chr5_3	CDS	69943235	69943342	69943235	ID=Msa0827970-mRNA-1:cds;Parent=Msa0827970-mRNA-1
chr5_3	CDS	69943048	69943125	69943048	ID=Msa0827970-mRNA-1:cds;Parent=Msa0827970-mRNA-1

Gene Sequence

>Msa0827970

ATGCAAGCTCATTGCCGCCGTGCATGGTCACCGGCGATGAAAGGTTTCACGATTCCTCGAATCTCAAATTCAATCTATTCCCTTTCTCACTCAATTTTCACAAAGTATTCATCATTTTCTTCATCTTCTTCTTCTTCTCTTATTCTACATGATTCTGATTCAAACCCAATTTCAAGTCCATTTTACAATCTTCTCCCACCGACCCAAAACCCTAAAAACATTGTAAACCTCATTTCAACAACCCTCAAACAAAAAAGTTTCCACCTTTCTCATTTTCAAACCCAATTCAAAACAATTCTCCCTCATTTGGGTACCCATGAAATTTCTAGGATTTTGATTAGAACTCAATCTGATGCTTCCTCATCACTCACATTTTTCAATTGGGTTAAAAATGATTTAAGGGTCACACTTAGTTTGCAGAATTATTGCTTAATTGTTCATATACTTGGTTGGAATCAAGTTTTTCATCAAGCCATGAAATTGTTGTGTGAATTGATACAATTGAACAATGTGAATGTTGTTTCTAATGATGATGTTTATAAGTGTTTGATTGATTGTACTGAGGATTGTAATTGGAATCCTGTGATTTTTGATATGCTTATTAAGGCTTATGTGAAATTAGGTATGGTTGATAAGGGTTTAGAGACTTTTTGGAAGAATGTTGAGGGTTGTTTTGTTCCTAATGTTGTTGCTTGTAATTGTTTGTTGAGCGGTTTGTCTAAGATTAATTATATTGGTGAATGTTGGGAAGTGTATGAAGAAATGGGGAGACTTGGAATACATAGAAATGGTTATACTTTTAATATTATGACTCATGTTTTGTGTAGAGAGGGGGATAGTGATAAAGTGAATGGATTTCTTGAGAAGATGGAGGAAGAAGGATTTGAACCGGATTTGGTTACGTATAACACATTGATTAATGGTTATTGTAAGAAAAGAAGGTTGGAGGATGCGTTTTATTTGTATAAGATTATGTGCATTAGAGGTGTGGTTCCTAATTTGATTTCATATAGTGCGTTGATGAACGGTCTGTGTAAAGAAGGGAAGATTAAGGAGGCTCATCAACTTTTTAATCAGATGGTTCAAAGAGGGATTGATCCGGATGTTGTGTCGTATAATACACTTATATCTGGTTATTGTAAAGAAGGTGGTAAGATGCAAATGTGTAGATCACTATTGCATGAAATGATAGGAATCGGGATTCGTCCGGACAATGTTACTTGTAGGATTGTTTTTCAAGGATATGCAAGGGAGGGAAAGCTTTTATCGGCGTTGAATATGGTTGCGGAACTTCAGAGGTTTGGAATTAAGATCCCTGAAAATTTATATGATTATCTCTTAGTTGCATTGTGTAAAGAAGGTCGACCGTTTGCGGCACGAAGTTTTCTGGTAAGGATATCTCAAGATGGCTATGTGCCTGAAATGAGTACTTACATTAAACTTGTAGAGTCTCTATGTACATTCAATAATGTTGAAGAGGCATTGATATTGAAATCTGAGTTGACAAACAAGAGTATGAAACTGAATCTCACTACCTATAAAGCTATCATAAGCTGCTTGTGTAGAATAAAGAGGACTTCAGAGGCTGAAAACTTGTTGGAGGAAATGGTTAGTTTAGGTATTCTACCTGATTTAGAAATAAAGAGGGCATTAATAAATGGATATTGTGAAGAAAACGATGTTGATAAAGCTGTGTCGTTATTGAAATTCTTTGCCAAGGAGTTTCAAGTTTACGATACCGAAAGCTACAACGTTATTGCTAAAGTCTTTTGTGAGGTTGGTAATGTGGTTGAGTTGATGGAGCTTCAAGATAAGCTGGTCAAGATAGGGTTTGTTCCAAATAGTTTAACATGCAAGTACGTTATCCGAGGATTGCAGAAAGGTATGGAACTCGATGATGATGATGATGATGATGATATATCGAACGGCGACATGCTTGAAGAGAAGCGATGTGAGCCTGATCGTGTCACTTACTGCACGCTCATCAATATCAATGCAAAAGCTGGATATCTTGATGTGGCCATGTCCATGTATGAAAGAATGCAACAAGGTTGTGTTCCTAATATTGTCACCTACAATATCATGACTGCTTTGCAAGCTAAAACAAGGAATATGAGGCAGCATTGA

Protein sequence

>Msa0827970

MQAHCRRAWSPAMKGFTIPRISNSIYSLSHSIFTKYSSFSSSSSSSLILHDSDSNPISSPFYNLLPPTQNPKNIVNLISTTLKQKSFHLSHFQTQFKTILPHLGTHEISRILIRTQSDASSSLTFFNWVKNDLRVTLSLQNYCLIVHILGWNQVFHQAMKLLCELIQLNNVNVVSNDDVYKCLIDCTEDCNWNPVIFDMLIKAYVKLGMVDKGLETFWKNVEGCFVPNVVACNCLLSGLSKINYIGECWEVYEEMGRLGIHRNGYTFNIMTHVLCREGDSDKVNGFLEKMEEEGFEPDLVTYNTLINGYCKKRRLEDAFYLYKIMCIRGVVPNLISYSALMNGLCKEGKIKEAHQLFNQMVQRGIDPDVVSYNTLISGYCKEGGKMQMCRSLLHEMIGIGIRPDNVTCRIVFQGYAREGKLLSALNMVAELQRFGIKIPENLYDYLLVALCKEGRPFAARSFLVRISQDGYVPEMSTYIKLVESLCTFNNVEEALILKSELTNKSMKLNLTTYKAIISCLCRIKRTSEAENLLEEMVSLGILPDLEIKRALINGYCEENDVDKAVSLLKFFAKEFQVYDTESYNVIAKVFCEVGNVVELMELQDKLVKIGFVPNSLTCKYVIRGLQKGMELDDDDDDDDISNGDMLEEKRCEPDRVTYCTLININAKAGYLDVAMSMYERMQQGCVPNIVTYNIMTALQAKTRNMRQH*