AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0504410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0504410 MtrunA17_Chr3g0104511 96.280 457 16 1 474 930 58 513 0.0 835
Msa0504410 MtrunA17_Chr3g0104701 98.182 275 5 0 187 461 1 275 0.0 576
Msa0504410 MtrunA17_Chr3g0104691 96.296 135 5 0 1 135 1 135 3.22e-51 177
Msa0504410 MtrunA17_Chr5g0436741 49.057 159 73 2 775 925 252 410 3.31e-42 159
Msa0504410 MtrunA17_Chr5g0436741 50.746 134 59 2 557 683 90 223 9.00e-33 132
Msa0504410 MtrunA17_Chr2g0333081 41.837 98 57 0 816 913 139 236 3.44e-18 85.9
Msa0504410 MtrunA17_Chr4g0063891 40.206 97 58 0 816 912 162 258 7.45e-17 82.4
Msa0504410 MtrunA17_Chr7g0262541 35.965 114 66 1 816 922 237 350 1.09e-16 82.8
Msa0504410 MtrunA17_Chr7g0262061 38.384 99 61 0 816 914 226 324 4.06e-16 81.3
Msa0504410 MtrunA17_Chr5g0411051 37.634 93 58 0 820 912 126 218 1.25e-14 75.1
Msa0504410 MtrunA17_Chr1g0186111 27.922 154 103 1 774 919 223 376 4.75e-13 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0504410 AT1G07280.3 56.144 472 171 12 484 929 87 548 3.53e-164 491
Msa0504410 AT1G07280.1 56.144 472 171 12 484 929 87 548 3.53e-164 491
Msa0504410 AT1G07280.2 56.144 472 171 12 484 929 87 548 3.53e-164 491
Msa0504410 AT2G29670.1 54.957 464 160 11 490 929 95 533 1.18e-149 453
Msa0504410 AT2G29670.2 54.957 464 160 11 490 929 95 533 1.18e-149 453
Msa0504410 AT3G47080.1 43.892 483 207 12 469 930 75 514 1.06e-115 364
Msa0504410 AT1G07280.4 52.911 395 150 12 484 852 87 471 1.27e-114 360
Msa0504410 AT5G58720.3 41.847 509 222 14 14 492 31 495 2.30e-95 310
Msa0504410 AT5G58720.2 43.683 467 200 13 14 461 31 453 3.76e-95 308
Msa0504410 AT5G58720.1 43.683 467 200 13 14 461 31 453 3.31e-94 307
Msa0504410 AT4G17940.1 39.785 93 56 0 820 912 154 246 4.58e-16 80.1
Msa0504410 AT5G20190.1 38.776 98 60 0 816 913 156 253 4.69e-16 80.5

Find 212 sgRNAs with CRISPR-Local

Find 674 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGGACTGTTTCGTCGATTT+TGG 0.142819 3_4:-48835738 Msa0504410:CDS
AACTAAAACAAGATCAAAAT+TGG 0.146495 3_4:-48826424 Msa0504410:three_prime_UTR
TCGAAGATTGGTTGAGATTT+TGG 0.152888 3_4:+48836271 None:intergenic
AAGATCTCAGAAGCTTTATT+TGG 0.160611 3_4:+48835989 None:intergenic
GAGGGTGTGGTTGGGTTTAA+AGG 0.190461 3_4:-48835803 Msa0504410:CDS
TTCACATACACCAACGTTAA+TGG 0.200607 3_4:-48828447 Msa0504410:CDS
CAGCAGTGGGATTCAGTTAA+AGG 0.238002 3_4:-48830599 Msa0504410:CDS
GGCTTCGACTTCGGGTTCTT+CGG 0.247015 3_4:-48835861 Msa0504410:CDS
AAATAATGCAATTATGGATT+TGG 0.248943 3_4:-48828840 Msa0504410:CDS
ATCAGAATTTCTATCATTAC+TGG 0.266131 3_4:+48831931 None:intergenic
CACGAAGAAGACGAAGAAAA+AGG 0.268392 3_4:+48835929 None:intergenic
TTGGATTTGGCTTCGACTTC+GGG 0.270312 3_4:-48835869 Msa0504410:CDS
AGGGTGTGGTTGGGTTTAAA+GGG 0.274528 3_4:-48835802 Msa0504410:CDS
GAACGAAAATAATGCAATTA+TGG 0.275782 3_4:-48828846 Msa0504410:CDS
GTTTGTGGGGAGGGTGTGGT+TGG 0.278344 3_4:-48835812 Msa0504410:CDS
ATATGGGGTCTGGGATCTTT+TGG 0.283532 3_4:-48831586 Msa0504410:CDS
TCTTCACAGGTCTCGATCTT+TGG 0.284883 3_4:-48829005 Msa0504410:intron
ATAAATACGCAACCTTCTTA+TGG 0.292547 3_4:-48826629 Msa0504410:CDS
GTGGAGCAGGTTTGTGGGGA+GGG 0.295468 3_4:-48835821 Msa0504410:CDS
TCTTCTTCCTCTTCTTGTAT+TGG 0.302233 3_4:+48828967 None:intergenic
CTGAAACTTCACCTTCTGTT+TGG 0.303000 3_4:-48829527 Msa0504410:CDS
GGCCGCAGAAGAGACTTATT+TGG 0.312086 3_4:-48826586 Msa0504410:CDS
TTCAGATGGGTTTGTGGAGC+AGG 0.314852 3_4:-48835834 Msa0504410:CDS
ACTTCCTCTTCTTGTTCTTC+CGG 0.317190 3_4:-48828797 Msa0504410:CDS
TTTGTCATGTTCAGAGCTTT+TGG 0.326485 3_4:+48831040 None:intergenic
TTCTGATAATATATGGGGTC+TGG 0.326646 3_4:-48831596 Msa0504410:CDS
ACAGAACTTGTTTATCAAAC+AGG 0.327067 3_4:-48827969 Msa0504410:CDS
AGCATAATTTGCAGCATAAT+AGG 0.327559 3_4:+48826536 None:intergenic
TTTGGATTTGGCTTCGACTT+CGG 0.332191 3_4:-48835870 Msa0504410:CDS
AGTTTCAGCATTCTCATTGC+TGG 0.338683 3_4:+48829542 None:intergenic
CTTTAGCTGTTCAGATGATA+AGG 0.339458 3_4:-48829365 Msa0504410:intron
TCTTGTTCTTCCGGTTCTTC+CGG 0.340413 3_4:-48828788 Msa0504410:CDS
AAGAAGAAGAAACTAAGATA+TGG 0.341917 3_4:-48828112 Msa0504410:CDS
AATCGTTGAAGGGTGTTGTT+GGG 0.344947 3_4:+48836300 None:intergenic
GCTTCGACTTCGGGTTCTTC+GGG 0.345030 3_4:-48835860 Msa0504410:CDS
AACTAAGATATGGGAATCTA+TGG 0.346469 3_4:-48828102 Msa0504410:CDS
AATGGTGGTGTTTATAAAAC+CGG 0.350156 3_4:-48828152 Msa0504410:CDS
GGTGGGAGGAAGAAGAAGTT+TGG 0.350533 3_4:-48835692 Msa0504410:CDS
GGGTGTGGTTGGGTTTAAAG+GGG 0.351310 3_4:-48835801 Msa0504410:CDS
GGGTTTGTGGAGCAGGTTTG+TGG 0.354779 3_4:-48835827 Msa0504410:CDS
GGTTTGTGGAGCAGGTTTGT+GGG 0.355495 3_4:-48835826 Msa0504410:CDS
TGTTGGAGAAAACGAGGATC+TGG 0.364850 3_4:+48836211 None:intergenic
CGGCATGAGAGAAATATCTA+TGG 0.368209 3_4:+48836330 None:intergenic
TTATTATAAGCTTCAGCATC+TGG 0.373541 3_4:+48826648 None:intergenic
AGCAAAGAAAATGCAGTCAT+TGG 0.373607 3_4:-48830994 Msa0504410:CDS
GGCATGAGAACCGGAAGAAC+CGG 0.378895 3_4:+48828778 None:intergenic
AGTTTCTGTATTCCATGCTT+GGG 0.380529 3_4:-48835637 Msa0504410:CDS
AAACCAGGTCTTAGCATCAT+TGG 0.381680 3_4:-48836077 Msa0504410:CDS
GCAGGTTTGTGGGGAGGGTG+TGG 0.382148 3_4:-48835816 Msa0504410:CDS
AGTTCTAACTTTGTGCATCC+TGG 0.385788 3_4:+48831098 None:intergenic
GAGAGGAATATCACGCCTTT+AGG 0.389980 3_4:-48830634 Msa0504410:CDS
GAGATCTTAAGCAGAGGTTT+GGG 0.390345 3_4:-48835974 Msa0504410:CDS
AGGATGAATCAAAGGAAAAC+GGG 0.391313 3_4:+48836247 None:intergenic
TGAGATCTTAAGCAGAGGTT+TGG 0.392730 3_4:-48835975 Msa0504410:CDS
ACTAAAACAAGATCAAAATT+GGG 0.394468 3_4:-48826423 Msa0504410:three_prime_UTR
AGTAATACTGCCTCGGTTGA+TGG 0.395286 3_4:-48828248 Msa0504410:CDS
CGTTGTTACTTGACATAGAA+TGG 0.397116 3_4:+48828390 None:intergenic
TTTGTGGGGAGGGTGTGGTT+GGG 0.398740 3_4:-48835811 Msa0504410:CDS
TGCTGAGGTTCTGCAACATT+TGG 0.399499 3_4:+48830951 None:intergenic
TCTTCCTCTTCTTGTATTGG+TGG 0.400469 3_4:+48828970 None:intergenic
AAGAAGATTGTTGCGGTGAC+AGG 0.401846 3_4:-48835758 Msa0504410:CDS
GGTTCTTCGGGTTCTTCAGA+TGG 0.406036 3_4:-48835848 Msa0504410:CDS
GCAAGTAACAAAGCATTGTT+TGG 0.412946 3_4:+48827933 None:intergenic
GATTCAATCTTAGCAGAAAC+TGG 0.414525 3_4:+48828017 None:intergenic
TTTAGCTGTTCAGATGATAA+GGG 0.415950 3_4:-48829364 Msa0504410:intron
TGCCGCATATCTTTCTGATC+AGG 0.416598 3_4:-48830418 Msa0504410:intron
TTATAGAAACGAAGAGGGTT+TGG 0.416689 3_4:-48828069 Msa0504410:CDS
AAAATTAACGGCATGAGAAC+CGG 0.424106 3_4:+48828769 None:intergenic
GAATCGTTGAAGGGTGTTGT+TGG 0.425806 3_4:+48836299 None:intergenic
CTCCGGTGGCTCAAAATTAA+CGG 0.427707 3_4:+48828757 None:intergenic
CTTCTTGTATTGGTGGAAAG+TGG 0.431042 3_4:+48828977 None:intergenic
GAAAACAAAGAATCTTCAAA+AGG 0.433550 3_4:-48836130 Msa0504410:CDS
CAGTTTCTGTATTCCATGCT+TGG 0.434930 3_4:-48835638 Msa0504410:CDS
TGTGGAGCAGGTTTGTGGGG+AGG 0.435737 3_4:-48835822 Msa0504410:CDS
AAATATAAACCGGTGGGGAG+TGG 0.442813 3_4:-48828206 Msa0504410:CDS
CTCGGATGTATTGCTTGACT+TGG 0.444019 3_4:-48831969 Msa0504410:CDS
TTCATCCACCTCAGTTTCCC+CGG 0.445114 3_4:+48828133 None:intergenic
GAAGAAGAAGTTTGGAAATG+AGG 0.454038 3_4:-48835684 Msa0504410:CDS
AAGGATGAATCAAAGGAAAA+CGG 0.456818 3_4:+48836246 None:intergenic
TCTGATAATATATGGGGTCT+GGG 0.458779 3_4:-48831595 Msa0504410:CDS
GTGTGGTTGGGTTTAAAGGG+GGG 0.459707 3_4:-48835799 Msa0504410:CDS
AGGAAAACGGGGTCGAAGAT+TGG 0.461774 3_4:+48836259 None:intergenic
AAAACAAAGAATCTTCAAAA+GGG 0.462735 3_4:-48836129 Msa0504410:CDS
TTCTTGTATTGGTGGAAAGT+GGG 0.467059 3_4:+48828978 None:intergenic
GATTCTTGAAAGAGTGCAAA+AGG 0.467494 3_4:-48828510 Msa0504410:CDS
GGATGATTGTGATCTTAACT+TGG 0.472823 3_4:-48835615 Msa0504410:CDS
GGGTTCTTCAGATGGGTTTG+TGG 0.473676 3_4:-48835840 Msa0504410:CDS
GGTGTGGTTGGGTTTAAAGG+GGG 0.477674 3_4:-48835800 Msa0504410:CDS
GTCATTGTGAACTTCGACGA+TGG 0.479077 3_4:+48828331 None:intergenic
GCTGCAACTGCATATACTAA+TGG 0.479881 3_4:-48830453 Msa0504410:CDS
TTTGACGGGGATGGACGAAC+CGG 0.480410 3_4:-48828182 Msa0504410:CDS
GTTCTAACTTTGTGCATCCT+GGG 0.482064 3_4:+48831099 None:intergenic
TGAGATTAAGGATGAATCAA+AGG 0.485774 3_4:+48836239 None:intergenic
GTTCTTCGGGTTCTTCAGAT+GGG 0.486074 3_4:-48835847 Msa0504410:CDS
GGGGAATGAATATGTGAGGA+GGG 0.491334 3_4:-48835717 Msa0504410:CDS
TTTGGAGAAGGAATCGTTGA+AGG 0.493191 3_4:+48836289 None:intergenic
TTCAAGATTCTCAGCGAAAA+CGG 0.494566 3_4:+48828689 None:intergenic
GCAAAGAAAATGCAGTCATT+GGG 0.495756 3_4:-48830993 Msa0504410:CDS
GCCTCGGTTGATGGAGGAAG+TGG 0.496999 3_4:-48828239 Msa0504410:CDS
AATGAATATGTGAGGAGGGA+TGG 0.500697 3_4:-48835713 Msa0504410:CDS
CTGTCTTGCATCTTGCCTAA+AGG 0.500914 3_4:+48830619 None:intergenic
GGGAGTGGATTTGACGGGGA+TGG 0.504157 3_4:-48828191 Msa0504410:CDS
AGAAGAAGAAACTAAGATAT+GGG 0.504906 3_4:-48828111 Msa0504410:CDS
TCTTGAGAAGAATCAGATAG+AGG 0.509178 3_4:+48826474 None:intergenic
CGCAGAAGAGACTTATTTGG+AGG 0.512178 3_4:-48826583 Msa0504410:CDS
GCAGCATAATAGGTGTTGCT+AGG 0.514052 3_4:+48826546 None:intergenic
TTTAGCTGCGGTTGCAACCC+CGG 0.514830 3_4:-48828366 Msa0504410:CDS
ATGCGGATATGATGTTGAAA+AGG 0.515579 3_4:-48834402 Msa0504410:intron
AGCTCAGAAAGCAGACACTA+AGG 0.515716 3_4:-48829802 Msa0504410:CDS
GAATATGTGAGGAGGGATGG+TGG 0.516953 3_4:-48835710 Msa0504410:CDS
AAGGAAGAATTCAGAGATGT+TGG 0.520097 3_4:-48828650 Msa0504410:CDS
TCTTCGTCTTCTTCGTGTAG+TGG 0.520783 3_4:-48835923 Msa0504410:CDS
TCGTTGCACATGAATTTGAC+AGG 0.520886 3_4:-48827887 Msa0504410:intron
GTTTGTGGAGCAGGTTTGTG+GGG 0.523585 3_4:-48835825 Msa0504410:CDS
AATATGTGAGGAGGGATGGT+GGG 0.524400 3_4:-48835709 Msa0504410:CDS
GTTGGAGAAAACGAGGATCT+GGG 0.525969 3_4:+48836212 None:intergenic
GTGATAACTATTGATTTGCA+TGG 0.527125 3_4:-48829578 Msa0504410:CDS
ATAAGGGTTATCACAGGATG+TGG 0.529444 3_4:-48829348 Msa0504410:CDS
CCGGTGGGGAGTGGATTTGA+CGG 0.530493 3_4:-48828197 Msa0504410:CDS
ATGACAAAGGTACCATGGAT+TGG 0.532885 3_4:-48831025 Msa0504410:CDS
GGCAAGATGCAAGACAGCAG+TGG 0.535365 3_4:-48830613 Msa0504410:CDS
AGTATTACTTCCACTCGAAA+CGG 0.537786 3_4:+48828262 None:intergenic
TTGGAGAAGGAATCGTTGAA+GGG 0.543680 3_4:+48836290 None:intergenic
GCCATGACATATTTGTTGCT+AGG 0.547291 3_4:-48829776 Msa0504410:intron
GGGTGTTGTTGGGGAAGCGA+CGG 0.548471 3_4:+48836310 None:intergenic
ATGTGAGGAGGGATGGTGGG+AGG 0.550177 3_4:-48835706 Msa0504410:CDS
CAGAACTTGTTTATCAAACA+GGG 0.550923 3_4:-48827968 Msa0504410:CDS
TGGGGAATGAATATGTGAGG+AGG 0.551383 3_4:-48835718 Msa0504410:CDS
ATCACAATCATCCCCAAGCA+TGG 0.551928 3_4:+48835625 None:intergenic
CCGCGGTGGGAAATATAAAC+CGG 0.553139 3_4:-48828216 Msa0504410:CDS
ATGGTGGTGTTTATAAAACC+GGG 0.553717 3_4:-48828151 Msa0504410:CDS
ATCGTTGAAGGGTGTTGTTG+GGG 0.554491 3_4:+48836301 None:intergenic
GATGGAGGAAGTGGCCGCGG+TGG 0.560003 3_4:-48828230 Msa0504410:CDS
CTTTCCACCAATACAAGAAG+AGG 0.562841 3_4:-48828974 Msa0504410:CDS
ATGGAGGAAGTGGCCGCGGT+GGG 0.564800 3_4:-48828229 Msa0504410:CDS
ATGGGAATCTATGGTTGAAG+AGG 0.565563 3_4:-48828093 Msa0504410:CDS
CTTCAAGAGAGCTATAGAAG+TGG 0.567749 3_4:-48826676 Msa0504410:CDS
CTTAAGCAGAGGTTTGGGTA+TGG 0.569775 3_4:-48835969 Msa0504410:CDS
AGAAGATTGTTGCGGTGACA+GGG 0.570171 3_4:-48835757 Msa0504410:CDS
AAGCAGAGGTTTGGGTATGG+TGG 0.570465 3_4:-48835966 Msa0504410:CDS
GTTGATGGAGGAAGTGGCCG+CGG 0.570618 3_4:-48828233 Msa0504410:CDS
CGATGGAAGAAGTCTCCACC+GGG 0.571840 3_4:+48828348 None:intergenic
GTTTCTGTATTCCATGCTTG+GGG 0.573385 3_4:-48835636 Msa0504410:CDS
TGCACATCTCTTTCATCGGA+AGG 0.574872 3_4:-48831625 Msa0504410:CDS
GCTAATTCTCATATTAGCCC+AGG 0.575022 3_4:-48831116 Msa0504410:CDS
GCAAGATGCAAGACAGCAGT+GGG 0.575712 3_4:-48830612 Msa0504410:CDS
GAGTGGAAGTAATACTGCCT+CGG 0.577752 3_4:-48828255 Msa0504410:CDS
AAGGACTCTAACACCTTCTG+AGG 0.578651 3_4:+48831074 None:intergenic
CGGTGGGGAGTGGATTTGAC+GGG 0.580234 3_4:-48828196 Msa0504410:CDS
CATTATGATCATAATCAACA+AGG 0.581084 3_4:+48831876 None:intergenic
ACGATGGAAGAAGTCTCCAC+CGG 0.584742 3_4:+48828347 None:intergenic
CTAAAACAAGATCAAAATTG+GGG 0.585959 3_4:-48826422 Msa0504410:three_prime_UTR
TTATAAGCTTCAGCATCTGG+TGG 0.586028 3_4:+48826651 None:intergenic
AAAATGCAGTCATTGGGACC+TGG 0.589424 3_4:-48830987 Msa0504410:CDS
TTTCACTTTACAAATGAGAG+AGG 0.591681 3_4:-48828558 Msa0504410:CDS
AGAACCGGAAGAACAAGAAG+AGG 0.591815 3_4:+48828793 None:intergenic
CCGTCAAATCCACTCCCCAC+CGG 0.599440 3_4:+48828197 None:intergenic
TGATAACTATTGATTTGCAT+GGG 0.600340 3_4:-48829577 Msa0504410:CDS
TCGTCTTCTTCGTGTAGTGG+TGG 0.600586 3_4:-48835920 Msa0504410:CDS
CAACCAATGATGCTAAGACC+TGG 0.602207 3_4:+48836074 None:intergenic
ATCACAGGATGTGGATCACA+TGG 0.607171 3_4:-48829339 Msa0504410:intron
AGAGTGCACATCTCTTTCAT+CGG 0.607365 3_4:-48831629 Msa0504410:CDS
AAAGTTAGAACTTCCTCAGA+AGG 0.608871 3_4:-48831087 Msa0504410:CDS
TTTGTTTGTAGCTAAAGGAG+AGG 0.612144 3_4:-48830651 Msa0504410:intron
AAAACATTCTCCGTTTCGAG+TGG 0.617119 3_4:-48828272 Msa0504410:CDS
AAACAAAGAATCTTCAAAAG+GGG 0.619043 3_4:-48836128 Msa0504410:CDS
TCTATGGAATACTGGTGGAG+AGG 0.619309 3_4:-48826508 Msa0504410:CDS
TAAAACCGGGGAAACTGAGG+TGG 0.619798 3_4:-48828138 Msa0504410:CDS
ACCTAGCAACAAATATGTCA+TGG 0.621163 3_4:+48829775 None:intergenic
CGGTGGGAAATATAAACCGG+TGG 0.621319 3_4:-48828213 Msa0504410:CDS
CAGATGATAAGGGTTATCAC+AGG 0.621366 3_4:-48829354 Msa0504410:CDS
GAACATATGATCCAAACAGA+AGG 0.621469 3_4:+48829516 None:intergenic
GCAGCATATGATGTTGCAAA+GGG 0.622671 3_4:-48836016 Msa0504410:CDS
ATACTGCGAGGACGCTGCTG+AGG 0.623096 3_4:+48830936 None:intergenic
AATTAGCTTTAGAACTAGTG+AGG 0.624571 3_4:+48831132 None:intergenic
AGAGGCTTATAGAAACGAAG+AGG 0.625061 3_4:-48828075 Msa0504410:CDS
GGTGGGAAATATAAACCGGT+GGG 0.628312 3_4:-48828212 Msa0504410:CDS
ATTATCGCTGGTATAAACTC+CGG 0.629792 3_4:+48828740 None:intergenic
GGCATGAGAGAAATATCTAT+GGG 0.631169 3_4:+48836331 None:intergenic
GCTTCTGAGATCTTAAGCAG+AGG 0.632694 3_4:-48835980 Msa0504410:CDS
ATCGCTGGTATAAACTCCGG+TGG 0.635655 3_4:+48828743 None:intergenic
AAGTAACAACGCTTTAGCTG+CGG 0.636246 3_4:-48828378 Msa0504410:CDS
GCATATACTAATGGAGATCG+AGG 0.637685 3_4:-48830444 Msa0504410:CDS
GCAGAAGAAGAAGATTGTTG+CGG 0.637774 3_4:-48835765 Msa0504410:CDS
GAGGCTTATAGAAACGAAGA+GGG 0.638175 3_4:-48828074 Msa0504410:CDS
AATACTGCCTCGGTTGATGG+AGG 0.639281 3_4:-48828245 Msa0504410:CDS
GCCACTTCCTCCATCAACCG+AGG 0.643564 3_4:+48828238 None:intergenic
GCTAGTGGTATGCAGAAACA+AGG 0.645414 3_4:-48829612 Msa0504410:intron
TGAACATGACAAAGGTACCA+TGG 0.647118 3_4:-48831030 Msa0504410:CDS
AGCTGCGGTTGCAACCCCGG+TGG 0.647798 3_4:-48828363 Msa0504410:CDS
TTATAAAACCGGGGAAACTG+AGG 0.650462 3_4:-48828141 Msa0504410:CDS
TGCAGCATATGATGTTGCAA+AGG 0.654899 3_4:-48836017 Msa0504410:CDS
AGTGGTGGTAGCACTAGCAA+TGG 0.660707 3_4:-48835905 Msa0504410:CDS
TGAACGAAAAGCGAATAGCG+TGG 0.660919 3_4:-48828717 Msa0504410:CDS
TTGGTTTAGGAATTATGCGG+AGG 0.661906 3_4:-48831156 Msa0504410:intron
TTATTGGTTTAGGAATTATG+CGG 0.666085 3_4:-48831159 Msa0504410:intron
ATAACATAAACCATTAACGT+TGG 0.667251 3_4:+48828437 None:intergenic
CAAGTCAAGCAATACATCCG+AGG 0.675046 3_4:+48831970 None:intergenic
TTTGGACGACCATCAAAACC+AGG 0.684977 3_4:+48830969 None:intergenic
TACAGAGTAGACAACATGGA+CGG 0.687272 3_4:-48831908 Msa0504410:CDS
TGGTGGTGTTTATAAAACCG+GGG 0.688559 3_4:-48828150 Msa0504410:CDS
CTCCAAATAAGTCTCTTCTG+CGG 0.688717 3_4:+48826584 None:intergenic
AACCTGATCAGAAAGATATG+CGG 0.693142 3_4:+48830416 None:intergenic
TCTTTGTATGCAGGTCAATG+CGG 0.696026 3_4:-48834419 Msa0504410:intron
TAAAACAAGATCAAAATTGG+GGG 0.697852 3_4:-48826421 Msa0504410:three_prime_UTR
AAAAGCTCTGAACATGACAA+AGG 0.701144 3_4:-48831038 Msa0504410:CDS
TGATTACAGAGTAGACAACA+TGG 0.704015 3_4:-48831912 Msa0504410:CDS
GGATGAATCAAAGGAAAACG+GGG 0.720043 3_4:+48836248 None:intergenic
CCGGTTTATATTTCCCACCG+CGG 0.731142 3_4:+48828216 None:intergenic
GTGGGAAATATAAACCGGTG+GGG 0.746911 3_4:-48828211 Msa0504410:CDS
GGTGGGGAGTGGATTTGACG+GGG 0.753129 3_4:-48828195 Msa0504410:CDS
GATGGAAGAAGTCTCCACCG+GGG 0.843031 3_4:+48828349 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+GGG + chr3_4:48832485-48832504 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG + chr3_4:48832486-48832505 None:intergenic 0.0%
!!! ATTTTGATAAATGATTTAAT+AGG - chr3_4:48831086-48831105 Msa0504410:CDS 10.0%
!!! TTTTGATAAATGATTTAATA+GGG - chr3_4:48831087-48831106 Msa0504410:CDS 10.0%
!!! TTTTTTTCTTATAATAGTAT+TGG + chr3_4:48835028-48835047 None:intergenic 10.0%
!!! TAATTTTTTTTTTTTCAATG+GGG - chr3_4:48836208-48836227 Msa0504410:five_prime_UTR 10.0%
!! TTGAAATATGAATATGATAA+TGG + chr3_4:48827202-48827221 None:intergenic 15.0%
!! AATGACTAAAATAATACAAA+TGG + chr3_4:48827994-48828013 None:intergenic 15.0%
!!! TAATATGTTTTCATAAGTTA+AGG - chr3_4:48829596-48829615 Msa0504410:CDS 15.0%
!!! AATATGTTTTCATAAGTTAA+GGG - chr3_4:48829597-48829616 Msa0504410:CDS 15.0%
!!! TGAACTTTTTAAATAAGTTA+AGG - chr3_4:48829688-48829707 Msa0504410:intron 15.0%
!!! GAACTTTTTAAATAAGTTAA+GGG - chr3_4:48829689-48829708 Msa0504410:intron 15.0%
!!! AACAGCAAATAATTTTATTA+AGG + chr3_4:48829733-48829752 None:intergenic 15.0%
!! AAATACTATTTAAATTGACA+CGG + chr3_4:48830387-48830406 None:intergenic 15.0%
!! TTCTGTAGTTATATATATAT+AGG - chr3_4:48832275-48832294 Msa0504410:intron 15.0%
!! TCTGTAGTTATATATATATA+GGG - chr3_4:48832276-48832295 Msa0504410:intron 15.0%
!! ATAAAATATTTGTATAGAAG+GGG + chr3_4:48833265-48833284 None:intergenic 15.0%
!! CATAAAATATTTGTATAGAA+GGG + chr3_4:48833266-48833285 None:intergenic 15.0%
!! CATTATGTTGAAATATATAT+CGG + chr3_4:48833291-48833310 None:intergenic 15.0%
!!! TTTCTTATAATAGTATTGAA+GGG + chr3_4:48835024-48835043 None:intergenic 15.0%
!!! TTTTCTTATAATAGTATTGA+AGG + chr3_4:48835025-48835044 None:intergenic 15.0%
!!! AATTCTTCATTGATTTTTGT+TGG + chr3_4:48826343-48826362 None:intergenic 20.0%
!!! TTGTTTTCTTCCATTTTTTT+GGG + chr3_4:48826392-48826411 None:intergenic 20.0%
!!! TTTGTTTTCTTCCATTTTTT+TGG + chr3_4:48826393-48826412 None:intergenic 20.0%
!! AAAACAAAGAATCTTCAAAA+GGG - chr3_4:48826405-48826424 Msa0504410:three_prime_UTR 20.0%
!!! TATGTTTTCAATTTTGTTCA+TGG - chr3_4:48827166-48827185 Msa0504410:intron 20.0%
!!! AGTTTGATGTAATTTTTTAG+AGG - chr3_4:48827223-48827242 Msa0504410:intron 20.0%
!!! CATGTTGTTTTGATTTTATA+TGG - chr3_4:48827940-48827959 Msa0504410:CDS 20.0%
!! AATTATATGAACATCAAGAA+AGG + chr3_4:48828364-48828383 None:intergenic 20.0%
!!! ACTTAGAAATAGAAAAGTAT+TGG - chr3_4:48828617-48828636 Msa0504410:CDS 20.0%
!! AATAAAATGAACAAATTCGA+GGG + chr3_4:48828873-48828892 None:intergenic 20.0%
!! AAATAAAATGAACAAATTCG+AGG + chr3_4:48828874-48828893 None:intergenic 20.0%
!! TTATGCAAGTTAAAATAACT+TGG + chr3_4:48829624-48829643 None:intergenic 20.0%
!!! ATTTTAACTTGCATAAGTTA+AGG - chr3_4:48829628-48829647 Msa0504410:intron 20.0%
!!! TTTTAACTTGCATAAGTTAA+GGG - chr3_4:48829629-48829648 Msa0504410:intron 20.0%
!!! TATTGTTTTCAAATTTACTC+TGG - chr3_4:48830715-48830734 Msa0504410:intron 20.0%
!! TGACTATTTCATAAACAAAT+GGG + chr3_4:48830761-48830780 None:intergenic 20.0%
!! TTGACTATTTCATAAACAAA+TGG + chr3_4:48830762-48830781 None:intergenic 20.0%
!!! TGACTTTTCTGATAATATAT+GGG - chr3_4:48830932-48830951 Msa0504410:intron 20.0%
!!! TCAAAATAGTTTTATTTTGC+AGG + chr3_4:48831073-48831092 None:intergenic 20.0%
!!! ATTCAATTTGATAACATCAA+AGG + chr3_4:48831833-48831852 None:intergenic 20.0%
!! AGAAAAAAAACAATAGATAG+AGG + chr3_4:48832230-48832249 None:intergenic 20.0%
!!! ATAGTGTTTGTTTTAAAATG+TGG - chr3_4:48832505-48832524 Msa0504410:intron 20.0%
!!! TAGATAATGTTTTTTGGTTT+TGG - chr3_4:48832599-48832618 Msa0504410:intron 20.0%
!!! AGATAATGTTTTTTGGTTTT+GGG - chr3_4:48832600-48832619 Msa0504410:intron 20.0%
!! ATAGTTAGCATATTATAACA+AGG + chr3_4:48832678-48832697 None:intergenic 20.0%
!! AAACAGGCAATAATAAATAA+TGG + chr3_4:48832893-48832912 None:intergenic 20.0%
!! TAAAATATTTGTATAGAAGG+GGG + chr3_4:48833264-48833283 None:intergenic 20.0%
!! GCATAAAATATTTGTATAGA+AGG + chr3_4:48833267-48833286 None:intergenic 20.0%
!! AAATAATGCAATTATGGATT+TGG - chr3_4:48833694-48833713 Msa0504410:intron 20.0%
!!! TTTTGTATGAAGATTTACAA+GGG - chr3_4:48834002-48834021 Msa0504410:intron 20.0%
!! TAAAAAATGAAAAGATTCCA+TGG + chr3_4:48834690-48834709 None:intergenic 20.0%
!! AGACTATACTATTGAAATTT+AGG - chr3_4:48834875-48834894 Msa0504410:intron 20.0%
!! TAGGATTTGAATTGAAAAAT+AGG - chr3_4:48834894-48834913 Msa0504410:intron 20.0%
!!! AATTGAAAAATAGGTGTTAT+TGG - chr3_4:48834903-48834922 Msa0504410:intron 20.0%
!!! ATTGAAAAATAGGTGTTATT+GGG - chr3_4:48834904-48834923 Msa0504410:intron 20.0%
!! ATGAATGAATTAACTTTACA+TGG - chr3_4:48835250-48835269 Msa0504410:intron 20.0%
!!! ATCTGATTTTATTCCATAAT+TGG + chr3_4:48835453-48835472 None:intergenic 20.0%
!!! AGATTTATTATGCTATTTTG+AGG - chr3_4:48835469-48835488 Msa0504410:intron 20.0%
!!! TTTTTTCCTTCTTCTATTTT+TGG + chr3_4:48835504-48835523 None:intergenic 20.0%
!!! AGTTGTATAATTGACAATTT+TGG - chr3_4:48835802-48835821 Msa0504410:CDS 20.0%
!!! CTTGTTTTAGTTGATTATTA+TGG + chr3_4:48836102-48836121 None:intergenic 20.0%
!! AACTAAAACAAGATCAAAAT+TGG - chr3_4:48836110-48836129 Msa0504410:CDS 20.0%
!! ACTAAAACAAGATCAAAATT+GGG - chr3_4:48836111-48836130 Msa0504410:CDS 20.0%
!!! AGTGAATCTTTTTGATTTTA+TGG - chr3_4:48836320-48836339 Msa0504410:five_prime_UTR 20.0%
! GAAAACAAAGAATCTTCAAA+AGG - chr3_4:48826404-48826423 Msa0504410:three_prime_UTR 25.0%
! AAACAAAGAATCTTCAAAAG+GGG - chr3_4:48826406-48826425 Msa0504410:three_prime_UTR 25.0%
! GTAGAAAACAAATTACTACA+TGG - chr3_4:48827055-48827074 Msa0504410:intron 25.0%
!!! TTTTTTAGAGGTTAATGAGT+TGG - chr3_4:48827235-48827254 Msa0504410:intron 25.0%
! GTTTAATACTATCATGAATC+AGG + chr3_4:48827524-48827543 None:intergenic 25.0%
! GTACAAAATGTTGTAAATAG+AGG + chr3_4:48827677-48827696 None:intergenic 25.0%
! AATAAAAGTTCTTTCCAACT+AGG + chr3_4:48827920-48827939 None:intergenic 25.0%
! AAGCAACAAACCAAAAAAAA+TGG + chr3_4:48828081-48828100 None:intergenic 25.0%
! GAAACACAAAAAATGTATAG+TGG + chr3_4:48828423-48828442 None:intergenic 25.0%
!!! TATTTTGTTTCTCCATACAT+TGG - chr3_4:48828490-48828509 Msa0504410:CDS 25.0%
!!! TGTACCTTCTTTTAATTTCA+TGG - chr3_4:48828536-48828555 Msa0504410:CDS 25.0%
! CTATCCATGAAATTAAAAGA+AGG + chr3_4:48828543-48828562 None:intergenic 25.0%
!! TGGATAGATTTTTATCCAAT+TGG - chr3_4:48828556-48828575 Msa0504410:CDS 25.0%
! GTACAAATTAACTATCCAAT+TGG + chr3_4:48828574-48828593 None:intergenic 25.0%
! TCTAGACTTCAAAGAAAATA+AGG + chr3_4:48828596-48828615 None:intergenic 25.0%
! CAATATACTATGACATGTAT+CGG + chr3_4:48828663-48828682 None:intergenic 25.0%
!!! GTTCATTTTATTTGAATGAC+TGG - chr3_4:48828881-48828900 Msa0504410:CDS 25.0%
! ATCAACTTACATAAGTTAAG+GGG + chr3_4:48829514-48829533 None:intergenic 25.0%
! CATCAACTTACATAAGTTAA+GGG + chr3_4:48829515-48829534 None:intergenic 25.0%
! CCTCAATTTACATAAGTTTA+GGG + chr3_4:48829547-48829566 None:intergenic 25.0%
! TTATCATATCCATCTATTGA+GGG + chr3_4:48829579-48829598 None:intergenic 25.0%
! ATTATCATATCCATCTATTG+AGG + chr3_4:48829580-48829599 None:intergenic 25.0%
! ATGGCAACAAATAATTAGAA+GGG + chr3_4:48829937-48829956 None:intergenic 25.0%
! AATGGCAACAAATAATTAGA+AGG + chr3_4:48829938-48829957 None:intergenic 25.0%
!! AGATATGATTATGATTTTCC+AGG - chr3_4:48830541-48830560 Msa0504410:intron 25.0%
! ATCAGAATTTCTATCATTAC+TGG + chr3_4:48830606-48830625 None:intergenic 25.0%
! CATTATGATCATAATCAACA+AGG + chr3_4:48830661-48830680 None:intergenic 25.0%
!!! CTCTGGTTTTAACATTTAAT+CGG - chr3_4:48830732-48830751 Msa0504410:intron 25.0%
!! GTGACTTTTCTGATAATATA+TGG - chr3_4:48830931-48830950 Msa0504410:intron 25.0%
!! GACTTTTCTGATAATATATG+GGG - chr3_4:48830933-48830952 Msa0504410:intron 25.0%
!!! AATAGTTTTATTTTGCAGGA+CGG + chr3_4:48831069-48831088 None:intergenic 25.0%
! GATAAATGATTTAATAGGGA+TGG - chr3_4:48831091-48831110 Msa0504410:CDS 25.0%
! CGCTCTTATACAAATAAAAT+TGG - chr3_4:48831153-48831172 Msa0504410:intron 25.0%
! CAAATACAAAAAAGAATACG+AGG + chr3_4:48831292-48831311 None:intergenic 25.0%
!!! TTATTGGTTTAGGAATTATG+CGG - chr3_4:48831375-48831394 Msa0504410:intron 25.0%
! AACAGAAAGTTAAAATCGAA+GGG + chr3_4:48831995-48832014 None:intergenic 25.0%
! AAACAAGACATAATCATACT+TGG + chr3_4:48832540-48832559 None:intergenic 25.0%
! AACGCTATTCTATAAAACAA+TGG + chr3_4:48832578-48832597 None:intergenic 25.0%
!!! GATAATGTTTTTTGGTTTTG+GGG - chr3_4:48832601-48832620 Msa0504410:intron 25.0%
! TTCTATTTGACAGAATCTTA+AGG + chr3_4:48832824-48832843 None:intergenic 25.0%
! GGATAAGAAAAATGTGAAAA+GGG + chr3_4:48832872-48832891 None:intergenic 25.0%
! TGGATAAGAAAAATGTGAAA+AGG + chr3_4:48832873-48832892 None:intergenic 25.0%
!!! TGATAACTATTGATTTGCAT+GGG - chr3_4:48832957-48832976 Msa0504410:intron 25.0%
! TTTGATGTATACATACATGT+TGG - chr3_4:48833311-48833330 Msa0504410:intron 25.0%
! GAACGAAAATAATGCAATTA+TGG - chr3_4:48833688-48833707 Msa0504410:intron 25.0%
!!! GAAAAAAGCTTTTTCTTCTA+TGG - chr3_4:48833928-48833947 Msa0504410:intron 25.0%
!! CTTTTGTATGAAGATTTACA+AGG - chr3_4:48834001-48834020 Msa0504410:intron 25.0%
! ATAACATAAACCATTAACGT+TGG + chr3_4:48834100-48834119 None:intergenic 25.0%
! AAGAAGAAGAAACTAAGATA+TGG - chr3_4:48834422-48834441 Msa0504410:intron 25.0%
! AGAAGAAGAAACTAAGATAT+GGG - chr3_4:48834423-48834442 Msa0504410:intron 25.0%
! GACTAGATACATCAATTATT+CGG + chr3_4:48835123-48835142 None:intergenic 25.0%
!!! TAGTTTGTATTTTAAGCTAC+CGG - chr3_4:48835375-48835394 Msa0504410:intron 25.0%
!!! AATTTGCATTGGAGATTTTT+TGG - chr3_4:48835416-48835435 Msa0504410:intron 25.0%
! ATCTAACCAAAAATAGAAGA+AGG - chr3_4:48835495-48835514 Msa0504410:intron 25.0%
! TCTTGATGAATATTGAAAGA+GGG - chr3_4:48835540-48835559 Msa0504410:intron 25.0%
!! TGTATGCTTTTGAATATTCA+GGG - chr3_4:48835825-48835844 Msa0504410:CDS 25.0%
!! ATTTTTCACTTTCCATAAGA+AGG + chr3_4:48835920-48835939 None:intergenic 25.0%
!! GAAAGTGAAAAATGATTTGT+GGG - chr3_4:48835927-48835946 Msa0504410:CDS 25.0%
!! CAAATTATGCTCATTTTCTA+TGG - chr3_4:48836010-48836029 Msa0504410:CDS 25.0%
! CTAAAACAAGATCAAAATTG+GGG - chr3_4:48836112-48836131 Msa0504410:CDS 25.0%
! TAAAACAAGATCAAAATTGG+GGG - chr3_4:48836113-48836132 Msa0504410:CDS 25.0%
!!! TTTTTTTTTTTCAATGGGGA+TGG - chr3_4:48836212-48836231 Msa0504410:five_prime_UTR 25.0%
!!! TTTTTTTTTTCAATGGGGAT+GGG - chr3_4:48836213-48836232 Msa0504410:five_prime_UTR 25.0%
AAGGATGAATCAAAGGAAAA+CGG + chr3_4:48826291-48826310 None:intergenic 30.0%
TGAGATTAAGGATGAATCAA+AGG + chr3_4:48826298-48826317 None:intergenic 30.0%
!!! TTTTCTTCCATTTTTTTGGG+AGG + chr3_4:48826389-48826408 None:intergenic 30.0%
!! AAGATCTCAGAAGCTTTATT+TGG + chr3_4:48826548-48826567 None:intergenic 30.0%
!!! TTTTTCTTCTGGTTTGGATT+TGG - chr3_4:48826652-48826671 Msa0504410:CDS 30.0%
!! GTTTTAAGCCATATGATTGA+AGG - chr3_4:48827410-48827429 Msa0504410:intron 30.0%
GGTTAAGATTTGGATGTAAA+TGG - chr3_4:48827486-48827505 Msa0504410:intron 30.0%
! TTTTGTACTAAATAGCGTAC+TGG - chr3_4:48827689-48827708 Msa0504410:intron 30.0%
TTTGTACTAAATAGCGTACT+GGG - chr3_4:48827690-48827709 Msa0504410:intron 30.0%
! ATCATACTTCTAAGTGTTGT+CGG + chr3_4:48827774-48827793 None:intergenic 30.0%
ATTCAATCGTTGATCTTATG+CGG - chr3_4:48827815-48827834 Msa0504410:intron 30.0%
TTAGAACTCAACCAATATGA+CGG - chr3_4:48827869-48827888 Msa0504410:intron 30.0%
TAAGTCAAATACCGTCATAT+TGG + chr3_4:48827883-48827902 None:intergenic 30.0%
AAGACATTGATACTAGTTCA+TGG - chr3_4:48828030-48828049 Msa0504410:CDS 30.0%
!!! TGTGTTCTGACCATTTTTTT+TGG - chr3_4:48828068-48828087 Msa0504410:CDS 30.0%
GCATACAAAGAAAAATTCCA+AGG + chr3_4:48828106-48828125 None:intergenic 30.0%
! TGGAATTTTTCTTTGTATGC+AGG - chr3_4:48828106-48828125 Msa0504410:CDS 30.0%
CCAAAAAGAAACTTCAAGAA+AGG + chr3_4:48828192-48828211 None:intergenic 30.0%
! CCTTTCTTGAAGTTTCTTTT+TGG - chr3_4:48828189-48828208 Msa0504410:CDS 30.0%
GTAGCACAGATATATTTACA+AGG + chr3_4:48828245-48828264 None:intergenic 30.0%
ATTGTATTACCACCTCAAAA+TGG + chr3_4:48828316-48828335 None:intergenic 30.0%
CATAGGTAATTACCAATGTA+TGG + chr3_4:48828505-48828524 None:intergenic 30.0%
! CATACATTGGTAATTACCTA+TGG - chr3_4:48828503-48828522 Msa0504410:CDS 30.0%
CTCAATGATGAGTCATTTAT+AGG + chr3_4:48828689-48828708 None:intergenic 30.0%
ACAGTCAACTGAATGTAAAA+GGG + chr3_4:48828739-48828758 None:intergenic 30.0%
!! ATTTTATTTGAATGACTGGC+CGG - chr3_4:48828885-48828904 Msa0504410:CDS 30.0%
CTTCCATAATTTCTTACTAC+CGG + chr3_4:48828907-48828926 None:intergenic 30.0%
GGTAGTAAGAAATTATGGAA+GGG - chr3_4:48828906-48828925 Msa0504410:CDS 30.0%
GTAGTAAGAAATTATGGAAG+GGG - chr3_4:48828907-48828926 Msa0504410:CDS 30.0%
!! AGGTTATTTTCCTGTATTCA+AGG - chr3_4:48829256-48829275 Msa0504410:intron 30.0%
! TTATTTTCCTGTATTCAAGG+CGG - chr3_4:48829259-48829278 Msa0504410:intron 30.0%
GCATCAACTTACATAAGTTA+AGG + chr3_4:48829516-48829535 None:intergenic 30.0%
!! TTATGTAAGTTGATGCAACT+TGG - chr3_4:48829520-48829539 Msa0504410:CDS 30.0%
CCCTAAACTTATGTAAATTG+AGG - chr3_4:48829544-48829563 Msa0504410:CDS 30.0%
GCCTCAATTTACATAAGTTT+AGG + chr3_4:48829548-48829567 None:intergenic 30.0%
TTATGTAAATTGAGGCAACT+TGG - chr3_4:48829552-48829571 Msa0504410:CDS 30.0%
!! TACTTTGAAACCAACCAATT+TGG + chr3_4:48829656-48829675 None:intergenic 30.0%
!! ATTGGTTGGTTTCAAAGTAA+AGG - chr3_4:48829657-48829676 Msa0504410:intron 30.0%
!! TTGGTTGGTTTCAAAGTAAA+GGG - chr3_4:48829658-48829677 Msa0504410:intron 30.0%
TTAAGGCTTAAATACCTCTT+TGG + chr3_4:48829716-48829735 None:intergenic 30.0%
TACAGGGATACAGAAATATT+TGG + chr3_4:48829803-48829822 None:intergenic 30.0%
!!! AGTTTGTTTTGCATCTTCAT+AGG - chr3_4:48829858-48829877 Msa0504410:intron 30.0%
TTGTGGTAAATACGATGTAA+TGG + chr3_4:48829956-48829975 None:intergenic 30.0%
!!! ACGAGTAACAAGTTTTTTTG+TGG + chr3_4:48829973-48829992 None:intergenic 30.0%
TGAGCAATAAAATAAGGACA+CGG + chr3_4:48830143-48830162 None:intergenic 30.0%
! CATAATGATAGTGTAAGTGT+CGG - chr3_4:48830674-48830693 Msa0504410:intron 30.0%
TGTTTATGAAATAGTCAACC+AGG - chr3_4:48830764-48830783 Msa0504410:intron 30.0%
! TGGATTGGATTGTTTATTGT+TGG - chr3_4:48830797-48830816 Msa0504410:intron 30.0%
ATTAATACCATGTACTGTGA+GGG + chr3_4:48830850-48830869 None:intergenic 30.0%
AATTAATACCATGTACTGTG+AGG + chr3_4:48830851-48830870 None:intergenic 30.0%
!! TTGTTGTTATTTCAGTGCAA+CGG + chr3_4:48831236-48831255 None:intergenic 30.0%
ATACGAGGATAGTCAATTAA+TGG + chr3_4:48831277-48831296 None:intergenic 30.0%
ATATAACCTTCTCCTAATCA+AGG - chr3_4:48831313-48831332 Msa0504410:intron 30.0%
ATATACCAAGATCCTTGATT+AGG + chr3_4:48831328-48831347 None:intergenic 30.0%
!! GCTTAGTTGTTTATTGGTTT+AGG - chr3_4:48831365-48831384 Msa0504410:intron 30.0%
!! AATTAGCTTTAGAACTAGTG+AGG + chr3_4:48831405-48831424 None:intergenic 30.0%
TAAATGCACTGTGTTAAGAT+TGG + chr3_4:48831742-48831761 None:intergenic 30.0%
TCAGAAAGTAAGTTCACATT+TGG - chr3_4:48831964-48831983 Msa0504410:CDS 30.0%
GAACAGAAAGTTAAAATCGA+AGG + chr3_4:48831996-48832015 None:intergenic 30.0%
ATATCAGTTCAGTATATGAG+AGG - chr3_4:48832042-48832061 Msa0504410:intron 30.0%
TATCAGTTCAGTATATGAGA+GGG - chr3_4:48832043-48832062 Msa0504410:intron 30.0%
! AGAAGCATAGAATGATAGAA+AGG + chr3_4:48832259-48832278 None:intergenic 30.0%
ATAAAAGACACCTTCACAAA+AGG + chr3_4:48832317-48832336 None:intergenic 30.0%
!! ACACCAACTTACTTTTATGA+AGG - chr3_4:48832366-48832385 Msa0504410:intron 30.0%
ACACCTTCATAAAAGTAAGT+TGG + chr3_4:48832372-48832391 None:intergenic 30.0%
AAAGTGAAAATCACACCTTA+AGG - chr3_4:48832414-48832433 Msa0504410:intron 30.0%
! TTTTATCAAGTCACACCTTA+AGG + chr3_4:48832432-48832451 None:intergenic 30.0%
!!! GCGTTCTAGATAATGTTTTT+TGG - chr3_4:48832593-48832612 Msa0504410:intron 30.0%
! ACCACTCTACTTTATGTTTT+TGG - chr3_4:48832634-48832653 Msa0504410:intron 30.0%
! CCACTCTACTTTATGTTTTT+GGG - chr3_4:48832635-48832654 Msa0504410:intron 30.0%
!! ATATGCTAACTATTTCTGTG+TGG - chr3_4:48832685-48832704 Msa0504410:intron 30.0%
!! TAACTATTTCTGTGTGGTTA+GGG - chr3_4:48832691-48832710 Msa0504410:intron 30.0%
!! GTGATAACTATTGATTTGCA+TGG - chr3_4:48832956-48832975 Msa0504410:intron 30.0%
ATGCTTAGAAAATGCTTACA+GGG + chr3_4:48833043-48833062 None:intergenic 30.0%
TTTAGCTGTTCAGATGATAA+GGG - chr3_4:48833170-48833189 Msa0504410:intron 30.0%
!! GTATACATACATGTTGGTTT+AGG - chr3_4:48833317-48833336 Msa0504410:intron 30.0%
AAATCACGAAACAAATTCGT+GGG - chr3_4:48833464-48833483 Msa0504410:intron 30.0%
! CATTATTTTCGTTCGAGATT+TGG + chr3_4:48833682-48833701 None:intergenic 30.0%
TTTCACTTTACAAATGAGAG+AGG - chr3_4:48833976-48833995 Msa0504410:intron 30.0%
! AATGGTGGTGTTTATAAAAC+CGG - chr3_4:48834382-48834401 Msa0504410:intron 30.0%
AACTAAGATATGGGAATCTA+TGG - chr3_4:48834432-48834451 Msa0504410:intron 30.0%
! ACAGAACTTGTTTATCAAAC+AGG - chr3_4:48834565-48834584 Msa0504410:intron 30.0%
! CAGAACTTGTTTATCAAACA+GGG - chr3_4:48834566-48834585 Msa0504410:intron 30.0%
TGAAAAGATTCCATGGAATT+TGG + chr3_4:48834683-48834702 None:intergenic 30.0%
! TTCATTTTACCTCCCAATTT+TGG - chr3_4:48834729-48834748 Msa0504410:intron 30.0%
TGTTGCTATAATCCTATTGT+TGG - chr3_4:48834850-48834869 Msa0504410:intron 30.0%
AGTATAGTCTAACCAACAAT+AGG + chr3_4:48834865-48834884 None:intergenic 30.0%
ATGCACTAAACAATTTGCAT+TGG - chr3_4:48835405-48835424 Msa0504410:intron 30.0%
! GGAGTTAAGTTTTCCAATTA+TGG - chr3_4:48835437-48835456 Msa0504410:intron 30.0%
GTCTTGATGAATATTGAAAG+AGG - chr3_4:48835539-48835558 Msa0504410:intron 30.0%
CTTGATGAATATTGAAAGAG+GGG - chr3_4:48835541-48835560 Msa0504410:intron 30.0%
!!! TATTTTCTTTTGAGACACGA+GGG + chr3_4:48835641-48835660 None:intergenic 30.0%
!!! ATATTTTCTTTTGAGACACG+AGG + chr3_4:48835642-48835661 None:intergenic 30.0%
CTTATGAAAAATCATGTGCT+TGG + chr3_4:48835703-48835722 None:intergenic 30.0%
! CAAGCACATGATTTTTCATA+AGG - chr3_4:48835701-48835720 Msa0504410:CDS 30.0%
! GTGTATGCTTTTGAATATTC+AGG - chr3_4:48835824-48835843 Msa0504410:CDS 30.0%
TTATTATAAGCTTCAGCATC+TGG + chr3_4:48835889-48835908 None:intergenic 30.0%
ATAAATACGCAACCTTCTTA+TGG - chr3_4:48835905-48835924 Msa0504410:CDS 30.0%
GGAAAGTGAAAAATGATTTG+TGG - chr3_4:48835926-48835945 Msa0504410:CDS 30.0%
! AGCATAATTTGCAGCATAAT+AGG + chr3_4:48836001-48836020 None:intergenic 30.0%
AAATTGGGGGAAATATATAG+AGG - chr3_4:48836126-48836145 Msa0504410:CDS 30.0%
GGCATGAGAGAAATATCTAT+GGG + chr3_4:48826206-48826225 None:intergenic 35.0%
!! ATTGGTTGAGATTTTGGAGA+AGG + chr3_4:48826260-48826279 None:intergenic 35.0%
!! TCGAAGATTGGTTGAGATTT+TGG + chr3_4:48826266-48826285 None:intergenic 35.0%
AGGATGAATCAAAGGAAAAC+GGG + chr3_4:48826290-48826309 None:intergenic 35.0%
!!! GATCTGGGTTTTTGAGATTA+AGG + chr3_4:48826310-48826329 None:intergenic 35.0%
! GATTTTTGTTGGAGAAAACG+AGG + chr3_4:48826332-48826351 None:intergenic 35.0%
GCAAAAACCTCCCAAAAAAA+TGG - chr3_4:48826379-48826398 Msa0504410:three_prime_UTR 35.0%
ACAACAAGAGACAAAAAACC+AGG - chr3_4:48826442-48826461 Msa0504410:three_prime_UTR 35.0%
!!! AGCTTTTTCGTTGTCTTCAA+TGG - chr3_4:48826484-48826503 Msa0504410:CDS 35.0%
ACGAAGAAGACGAAGAAAAA+GGG + chr3_4:48826607-48826626 None:intergenic 35.0%
! ACTAGCAATGGTTTTTCTTC+TGG - chr3_4:48826641-48826660 Msa0504410:CDS 35.0%
!! CAATGGTTTTTCTTCTGGTT+TGG - chr3_4:48826646-48826665 Msa0504410:CDS 35.0%
!! TTTTGGGGAATGAATATGTG+AGG - chr3_4:48826813-48826832 Msa0504410:intron 35.0%
GAAGAAGAAGTTTGGAAATG+AGG - chr3_4:48826850-48826869 Msa0504410:intron 35.0%
AGTTTCTGTATTCCATGCTT+GGG - chr3_4:48826897-48826916 Msa0504410:intron 35.0%
GGATGATTGTGATCTTAACT+TGG - chr3_4:48826919-48826938 Msa0504410:intron 35.0%
!!! CATCTTTTTTGTTCCGAAAC+AGG + chr3_4:48827119-48827138 None:intergenic 35.0%
! TAATGAGTTGGATCCAGATA+TGG - chr3_4:48827247-48827266 Msa0504410:intron 35.0%
GATCCAGATATGGTTTATGA+GGG - chr3_4:48827257-48827276 Msa0504410:intron 35.0%
TTACCCTCATAAACCATATC+TGG + chr3_4:48827263-48827282 None:intergenic 35.0%
TTAAGCCATATGATTGAAGG+AGG - chr3_4:48827413-48827432 Msa0504410:intron 35.0%
TCAAACCTCCTTCAATCATA+TGG + chr3_4:48827421-48827440 None:intergenic 35.0%
TTATCTGATGTCGTCTATCA+AGG + chr3_4:48827551-48827570 None:intergenic 35.0%
GATAGACGACATCAGATAAA+CGG - chr3_4:48827552-48827571 Msa0504410:intron 35.0%
TTGTACTAAATAGCGTACTG+GGG - chr3_4:48827691-48827710 Msa0504410:intron 35.0%
TGATCTTATGCGGTTTATCA+CGG - chr3_4:48827825-48827844 Msa0504410:intron 35.0%
AAAAGTTCTTTCCAACTAGG+CGG + chr3_4:48827917-48827936 None:intergenic 35.0%
ATGCGGATATGATGTTGAAA+AGG - chr3_4:48828132-48828151 Msa0504410:CDS 35.0%
!! CTGTGCTACTGTTTGAATTT+TGG - chr3_4:48828256-48828275 Msa0504410:CDS 35.0%
! GTAATTACCTATGGTTAGTC+AGG - chr3_4:48828512-48828531 Msa0504410:CDS 35.0%
! ACTATGACATGTATCGGTAT+TGG + chr3_4:48828657-48828676 None:intergenic 35.0%
AAATGACTCATCATTGAGAG+TGG - chr3_4:48828691-48828710 Msa0504410:CDS 35.0%
CACAGTCAACTGAATGTAAA+AGG + chr3_4:48828740-48828759 None:intergenic 35.0%
ACAATGCAAGAACAATAGCA+TGG + chr3_4:48828790-48828809 None:intergenic 35.0%
!! AAGTTTGGTGTAAGGTGTTT+CGG - chr3_4:48828823-48828842 Msa0504410:CDS 35.0%
CGGTAGTAAGAAATTATGGA+AGG - chr3_4:48828905-48828924 Msa0504410:CDS 35.0%
TTTGATATGACATGCAACTC+TGG - chr3_4:48828935-48828954 Msa0504410:CDS 35.0%
AGTTCCTACTTATCAACTGT+CGG - chr3_4:48829063-48829082 Msa0504410:intron 35.0%
CAGAGGAAACTACATCTTAA+CGG + chr3_4:48829110-48829129 None:intergenic 35.0%
! GCAGACTTTTGATGTGATTT+CGG - chr3_4:48829144-48829163 Msa0504410:intron 35.0%
! AGTTCTGCATTTCTGGATTA+AGG - chr3_4:48829182-48829201 Msa0504410:intron 35.0%
!! AACATAGCTTTAGTGCGTAT+CGG - chr3_4:48829301-48829320 Msa0504410:intron 35.0%
! GTGAACACAGTTTTTAACAC+CGG - chr3_4:48829410-48829429 Msa0504410:intron 35.0%
TCTGGAAATCAAAACAGATC+CGG + chr3_4:48829432-48829451 None:intergenic 35.0%
TGCACAAATTATACACAGTC+TGG + chr3_4:48829450-48829469 None:intergenic 35.0%
! ACTGTGTATAATTTGTGCAC+TGG - chr3_4:48829451-48829470 Msa0504410:intron 35.0%
CATAAGTTAAGGGACCAAAT+TGG - chr3_4:48829639-48829658 Msa0504410:intron 35.0%
AATAAGTTAAGGGACCAAAG+AGG - chr3_4:48829699-48829718 Msa0504410:intron 35.0%
!!! ATGAGCGACAAGTTTTATTG+TGG + chr3_4:48829779-48829798 None:intergenic 35.0%
TACGATACGACATTGATACA+GGG + chr3_4:48829819-48829838 None:intergenic 35.0%
AGCAATAAAATAAGGACACG+GGG + chr3_4:48830141-48830160 None:intergenic 35.0%
GAGCAATAAAATAAGGACAC+GGG + chr3_4:48830142-48830161 None:intergenic 35.0%
GGAGCATGAGCAATAAAATA+AGG + chr3_4:48830149-48830168 None:intergenic 35.0%
CTAAAGAGTAAGCCCTAAAA+GGG + chr3_4:48830170-48830189 None:intergenic 35.0%
ACTAAAGAGTAAGCCCTAAA+AGG + chr3_4:48830171-48830190 None:intergenic 35.0%
CTTACTCTTTAGTCCATCTA+TGG - chr3_4:48830178-48830197 Msa0504410:intron 35.0%
AACCATAGTAACTCCATAGA+TGG + chr3_4:48830194-48830213 None:intergenic 35.0%
CAGCATAACAACAGCAAAAA+GGG + chr3_4:48830296-48830315 None:intergenic 35.0%
TCAGCATAACAACAGCAAAA+AGG + chr3_4:48830297-48830316 None:intergenic 35.0%
AGTACGATACGACATAGATA+CGG + chr3_4:48830418-48830437 None:intergenic 35.0%
TGATTACAGAGTAGACAACA+TGG - chr3_4:48830622-48830641 Msa0504410:CDS 35.0%
TTAATACCATGTACTGTGAG+GGG + chr3_4:48830849-48830868 None:intergenic 35.0%
TTCTGATAATATATGGGGTC+TGG - chr3_4:48830938-48830957 Msa0504410:intron 35.0%
TCTGATAATATATGGGGTCT+GGG - chr3_4:48830939-48830958 Msa0504410:intron 35.0%
! ATTTGTATAAGAGCGCATAC+AGG + chr3_4:48831148-48831167 None:intergenic 35.0%
!! CGACTAGCTTAGTTGTTTAT+TGG - chr3_4:48831359-48831378 Msa0504410:intron 35.0%
AAAGTTAGAACTTCCTCAGA+AGG - chr3_4:48831447-48831466 Msa0504410:intron 35.0%
!! GCTTTTGGGAATGTTAAACA+AGG + chr3_4:48831482-48831501 None:intergenic 35.0%
!!! TGCTATTTTTCTCCAATCCA+TGG + chr3_4:48831524-48831543 None:intergenic 35.0%
AGCAAAGAAAATGCAGTCAT+TGG - chr3_4:48831540-48831559 Msa0504410:intron 35.0%
GCAAAGAAAATGCAGTCATT+GGG - chr3_4:48831541-48831560 Msa0504410:intron 35.0%
TTCCAAATTTACATACTGCG+AGG + chr3_4:48831613-48831632 None:intergenic 35.0%
! TTTTTACCCCTCATAATGTG+AGG - chr3_4:48831700-48831719 Msa0504410:intron 35.0%
! TCCTTTTCCTCACATTATGA+GGG + chr3_4:48831710-48831729 None:intergenic 35.0%
! TTCCTTTTCCTCACATTATG+AGG + chr3_4:48831711-48831730 None:intergenic 35.0%
!! CTTGCTTTGTTTGTAGCTAA+AGG - chr3_4:48831878-48831897 Msa0504410:CDS 35.0%
TTTGTTTGTAGCTAAAGGAG+AGG - chr3_4:48831883-48831902 Msa0504410:CDS 35.0%
TATCTGAACTCCAAATCAAC+TGG + chr3_4:48832025-48832044 None:intergenic 35.0%
AACCTGATCAGAAAGATATG+CGG + chr3_4:48832121-48832140 None:intergenic 35.0%
! ATAGAAGACACCTTTTGTGA+AGG - chr3_4:48832304-48832323 Msa0504410:intron 35.0%
TTGATAAAAGACACCACCAA+AGG - chr3_4:48832443-48832462 Msa0504410:intron 35.0%
TGATAAAAGACACCACCAAA+GGG - chr3_4:48832444-48832463 Msa0504410:intron 35.0%
CCCAAAAACATAAAGTAGAG+TGG + chr3_4:48832638-48832657 None:intergenic 35.0%
!!! TTTATGTTTTTGGGCCATGA+AGG - chr3_4:48832644-48832663 Msa0504410:intron 35.0%
!! CTAACTATTTCTGTGTGGTT+AGG - chr3_4:48832690-48832709 Msa0504410:intron 35.0%
ACCTAGCAACAAATATGTCA+TGG + chr3_4:48832762-48832781 None:intergenic 35.0%
! TGACATATTTGTTGCTAGGT+CGG - chr3_4:48832762-48832781 Msa0504410:intron 35.0%
CACTAGCAATAGGTTAAAAC+AGG + chr3_4:48832909-48832928 None:intergenic 35.0%
!!! CTGTTTTAACCTATTGCTAG+TGG - chr3_4:48832907-48832926 Msa0504410:intron 35.0%
GAACATATGATCCAAACAGA+AGG + chr3_4:48833021-48833040 None:intergenic 35.0%
GATGCTTAGAAAATGCTTAC+AGG + chr3_4:48833044-48833063 None:intergenic 35.0%
! CTTCTCACATTTTCCTTTCT+CGG - chr3_4:48833067-48833086 Msa0504410:intron 35.0%
! TTCTCACATTTTCCTTTCTC+GGG - chr3_4:48833068-48833087 Msa0504410:intron 35.0%
TCGGGACATTTAGACTAAAA+TGG - chr3_4:48833086-48833105 Msa0504410:intron 35.0%
CTTTAGCTGTTCAGATGATA+AGG - chr3_4:48833169-48833188 Msa0504410:intron 35.0%
GAAATCCAAGCTGAAACAAT+CGG - chr3_4:48833224-48833243 Msa0504410:intron 35.0%
AATATTTGTATAGAAGGGGG+TGG + chr3_4:48833261-48833280 None:intergenic 35.0%
! TTGTTTCGTGATTTGGATGA+TGG + chr3_4:48833458-48833477 None:intergenic 35.0%
! CACGAATTTGTTTCGTGATT+TGG + chr3_4:48833465-48833484 None:intergenic 35.0%
CAAATCACGAAACAAATTCG+TGG - chr3_4:48833463-48833482 Msa0504410:intron 35.0%
AGACCTGTGAAGAACAAAAT+TGG + chr3_4:48833522-48833541 None:intergenic 35.0%
! TTCTTGTATTGGTGGAAAGT+GGG + chr3_4:48833559-48833578 None:intergenic 35.0%
TCTTCTTCCTCTTCTTGTAT+TGG + chr3_4:48833570-48833589 None:intergenic 35.0%
AAAATTAACGGCATGAGAAC+CGG + chr3_4:48833768-48833787 None:intergenic 35.0%
ATTATCGCTGGTATAAACTC+CGG + chr3_4:48833797-48833816 None:intergenic 35.0%
TTCAAGATTCTCAGCGAAAA+CGG + chr3_4:48833848-48833867 None:intergenic 35.0%
GAAAAAGAAACTGAAGCTGA+AGG - chr3_4:48833865-48833884 Msa0504410:intron 35.0%
AAGGAAGAATTCAGAGATGT+TGG - chr3_4:48833884-48833903 Msa0504410:intron 35.0%
! GATTCTTGAAAGAGTGCAAA+AGG - chr3_4:48834024-48834043 Msa0504410:intron 35.0%
! AAATGCACGCTTCTTTTGTT+TGG - chr3_4:48834047-48834066 Msa0504410:intron 35.0%
TTCACATACACCAACGTTAA+TGG - chr3_4:48834087-48834106 Msa0504410:intron 35.0%
! CGTTGTTACTTGACATAGAA+TGG + chr3_4:48834147-48834166 None:intergenic 35.0%
AGTATTACTTCCACTCGAAA+CGG + chr3_4:48834275-48834294 None:intergenic 35.0%
AACACCACCATTAGAAAAAC+CGG + chr3_4:48834374-48834393 None:intergenic 35.0%
! ATGGTGGTGTTTATAAAACC+GGG - chr3_4:48834383-48834402 Msa0504410:intron 35.0%
TTATAGAAACGAAGAGGGTT+TGG - chr3_4:48834465-48834484 Msa0504410:intron 35.0%
GATTCAATCTTAGCAGAAAC+TGG + chr3_4:48834520-48834539 None:intergenic 35.0%
!! GCAAGTAACAAAGCATTGTT+TGG + chr3_4:48834604-48834623 None:intergenic 35.0%
TGCGTATATTCCAAATTCCA+TGG - chr3_4:48834670-48834689 Msa0504410:intron 35.0%
CCAATGAAGCTACCAAAATT+GGG + chr3_4:48834744-48834763 None:intergenic 35.0%
ACCAATGAAGCTACCAAAAT+TGG + chr3_4:48834745-48834764 None:intergenic 35.0%
TGTTTAGTGCATCTAGAAAC+CGG + chr3_4:48835397-48835416 None:intergenic 35.0%
AATATTGAAAGAGGGGTTTG+CGG - chr3_4:48835548-48835567 Msa0504410:intron 35.0%
! GCTCATTTTCTATGGAATAC+TGG - chr3_4:48836018-48836037 Msa0504410:CDS 35.0%
! CATTTTCTATGGAATACTGG+TGG - chr3_4:48836021-48836040 Msa0504410:CDS 35.0%
TCTTGAGAAGAATCAGATAG+AGG + chr3_4:48836063-48836082 None:intergenic 35.0%
CGGCATGAGAGAAATATCTA+TGG + chr3_4:48826207-48826226 None:intergenic 40.0%
!! AATCGTTGAAGGGTGTTGTT+GGG + chr3_4:48826237-48826256 None:intergenic 40.0%
TTGGAGAAGGAATCGTTGAA+GGG + chr3_4:48826247-48826266 None:intergenic 40.0%
TTTGGAGAAGGAATCGTTGA+AGG + chr3_4:48826248-48826267 None:intergenic 40.0%
GGATGAATCAAAGGAAAACG+GGG + chr3_4:48826289-48826308 None:intergenic 40.0%
AAACCAGGTCTTAGCATCAT+TGG - chr3_4:48826457-48826476 Msa0504410:exon 40.0%
TGCAGCATATGATGTTGCAA+AGG - chr3_4:48826517-48826536 Msa0504410:CDS 40.0%
GCAGCATATGATGTTGCAAA+GGG - chr3_4:48826518-48826537 Msa0504410:CDS 40.0%
TGAGATCTTAAGCAGAGGTT+TGG - chr3_4:48826559-48826578 Msa0504410:CDS 40.0%
GAGATCTTAAGCAGAGGTTT+GGG - chr3_4:48826560-48826579 Msa0504410:CDS 40.0%
CACGAAGAAGACGAAGAAAA+AGG + chr3_4:48826608-48826627 None:intergenic 40.0%
! TTTGGATTTGGCTTCGACTT+CGG - chr3_4:48826664-48826683 Msa0504410:CDS 40.0%
GCAGAAGAAGAAGATTGTTG+CGG - chr3_4:48826769-48826788 Msa0504410:intron 40.0%
AATGAATATGTGAGGAGGGA+TGG - chr3_4:48826821-48826840 Msa0504410:intron 40.0%
CAGTTTCTGTATTCCATGCT+TGG - chr3_4:48826896-48826915 Msa0504410:intron 40.0%
GTTTCTGTATTCCATGCTTG+GGG - chr3_4:48826898-48826917 Msa0504410:intron 40.0%
GGATCCAGATATGGTTTATG+AGG - chr3_4:48827256-48827275 Msa0504410:intron 40.0%
GAATGTCAAAGAAAACCACG+TGG - chr3_4:48827458-48827477 Msa0504410:intron 40.0%
AAAGAAAACCACGTGGAGAA+TGG - chr3_4:48827465-48827484 Msa0504410:intron 40.0%
AATCTTAACCATTCTCCACG+TGG + chr3_4:48827476-48827495 None:intergenic 40.0%
CGTGGAGAATGGTTAAGATT+TGG - chr3_4:48827476-48827495 Msa0504410:intron 40.0%
AGAAGCAGTGTTGTGAATCA+AGG - chr3_4:48827600-48827619 Msa0504410:intron 40.0%
GCTATATCACTGTAGCATAG+CGG + chr3_4:48827655-48827674 None:intergenic 40.0%
!! TTTGGTTTGTTGCTTGACCT+TGG - chr3_4:48828086-48828105 Msa0504410:CDS 40.0%
TCTTTGTATGCAGGTCAATG+CGG - chr3_4:48828115-48828134 Msa0504410:CDS 40.0%
TGGCCGGTAGTAAGAAATTA+TGG - chr3_4:48828901-48828920 Msa0504410:CDS 40.0%
ACATGCAACTCTGGTCAATT+TGG - chr3_4:48828944-48828963 Msa0504410:CDS 40.0%
! TCAATTTGGAAGGCATGGAA+TGG - chr3_4:48828958-48828977 Msa0504410:CDS 40.0%
TGGTTAGATCTTCGAAAACC+AGG - chr3_4:48828978-48828997 Msa0504410:CDS 40.0%
!!! AGGTTGCTGCAGTTTTTTGT+CGG - chr3_4:48829202-48829221 Msa0504410:intron 40.0%
!!! GTTTTTTGTCGGGTCTGTTA+TGG - chr3_4:48829213-48829232 Msa0504410:intron 40.0%
! TAGCTGTGGGGAAATTTTTC+TGG - chr3_4:48829351-48829370 Msa0504410:CDS 40.0%
ACATAAGTTAAGGGGCAAAG+TGG + chr3_4:48829506-48829525 None:intergenic 40.0%
AGTTAAGGGACCAAATTGGT+TGG - chr3_4:48829643-48829662 Msa0504410:intron 40.0%
GTACGATACGACATTGATAC+AGG + chr3_4:48829820-48829839 None:intergenic 40.0%
GCAAAACAAACTAACAAGCC+CGG + chr3_4:48829850-48829869 None:intergenic 40.0%
TTGGGATTATACACACTGCT+GGG - chr3_4:48830021-48830040 Msa0504410:intron 40.0%
TGCTGAGTTGTTGCTGTATT+TGG - chr3_4:48830075-48830094 Msa0504410:intron 40.0%
! TATTGCTCATGCTCCCTTTT+AGG - chr3_4:48830154-48830173 Msa0504410:intron 40.0%
! ATTGCTCATGCTCCCTTTTA+GGG - chr3_4:48830155-48830174 Msa0504410:intron 40.0%
GTCCATCTATGGAGTTACTA+TGG - chr3_4:48830189-48830208 Msa0504410:intron 40.0%
! TTGTGTGTTTCTGTGTGTGT+AGG - chr3_4:48830327-48830346 Msa0504410:intron 40.0%
! TGTGTGTTTCTGTGTGTGTA+GGG - chr3_4:48830328-48830347 Msa0504410:intron 40.0%
TACGATACGACATAGATACG+GGG + chr3_4:48830416-48830435 None:intergenic 40.0%
GTACGATACGACATAGATAC+GGG + chr3_4:48830417-48830436 None:intergenic 40.0%
! GATTATGATTTTCCAGGCCT+CGG - chr3_4:48830547-48830566 Msa0504410:intron 40.0%
TACAGAGTAGACAACATGGA+CGG - chr3_4:48830626-48830645 Msa0504410:CDS 40.0%
! GTCAACCAGGTGCTTAATTT+TGG - chr3_4:48830777-48830796 Msa0504410:intron 40.0%
CCAATCCAAAATTAAGCACC+TGG + chr3_4:48830785-48830804 None:intergenic 40.0%
! CCAGGTGCTTAATTTTGGAT+TGG - chr3_4:48830782-48830801 Msa0504410:intron 40.0%
AGAGTGCACATCTCTTTCAT+CGG - chr3_4:48830905-48830924 Msa0504410:intron 40.0%
! AGGGTATCAACACTGTACTA+TGG + chr3_4:48831018-48831037 None:intergenic 40.0%
GAGGGAGAGAAAAATGTGAA+GGG + chr3_4:48831037-48831056 None:intergenic 40.0%
AGAGGGAGAGAAAAATGTGA+AGG + chr3_4:48831038-48831057 None:intergenic 40.0%
!!! AGTTTTATTTTGCAGGACGG+AGG + chr3_4:48831066-48831085 None:intergenic 40.0%
AATAGGGATGGAAGCAAGAT+TGG - chr3_4:48831103-48831122 Msa0504410:CDS 40.0%
ATAGGGATGGAAGCAAGATT+GGG - chr3_4:48831104-48831123 Msa0504410:CDS 40.0%
! CAACGGTGATACTGATAATG+AGG + chr3_4:48831219-48831238 None:intergenic 40.0%
CAAGATCCTTGATTAGGAGA+AGG + chr3_4:48831322-48831341 None:intergenic 40.0%
CTTCTCCTAATCAAGGATCT+TGG - chr3_4:48831320-48831339 Msa0504410:intron 40.0%
ACAACTAAGCTAGTCGTGTT+AGG + chr3_4:48831355-48831374 None:intergenic 40.0%
TTGGTTTAGGAATTATGCGG+AGG - chr3_4:48831378-48831397 Msa0504410:intron 40.0%
GCTAATTCTCATATTAGCCC+AGG - chr3_4:48831418-48831437 Msa0504410:intron 40.0%
GTTCTAACTTTGTGCATCCT+GGG + chr3_4:48831438-48831457 None:intergenic 40.0%
! AGTTCTAACTTTGTGCATCC+TGG + chr3_4:48831439-48831458 None:intergenic 40.0%
!! TGAACATGACAAAGGTACCA+TGG - chr3_4:48831504-48831523 Msa0504410:intron 40.0%
!! ATGACAAAGGTACCATGGAT+TGG - chr3_4:48831509-48831528 Msa0504410:intron 40.0%
GTCCTCGCAGTATGTAAATT+TGG - chr3_4:48831608-48831627 Msa0504410:CDS 40.0%
! CCTTTTCCTCACATTATGAG+GGG + chr3_4:48831709-48831728 None:intergenic 40.0%
TGCACTGTGTTAAGATTGGA+TGG + chr3_4:48831738-48831757 None:intergenic 40.0%
GCTGCAACTGCATATACTAA+TGG - chr3_4:48832081-48832100 Msa0504410:intron 40.0%
GCATATACTAATGGAGATCG+AGG - chr3_4:48832090-48832109 Msa0504410:intron 40.0%
! TAGAGGAATTGAGAAAGCGT+TGG + chr3_4:48832213-48832232 None:intergenic 40.0%
! TTTTGTTACAAGCCACCCTT+TGG + chr3_4:48832462-48832481 None:intergenic 40.0%
! GCCATGACATATTTGTTGCT+AGG - chr3_4:48832758-48832777 Msa0504410:intron 40.0%
TTCTGCATACCACTAGCAAT+AGG + chr3_4:48832919-48832938 None:intergenic 40.0%
AGTTTCAGCATTCTCATTGC+TGG + chr3_4:48832995-48833014 None:intergenic 40.0%
CTGAAACTTCACCTTCTGTT+TGG - chr3_4:48833007-48833026 Msa0504410:intron 40.0%
TAGTCTAAATGTCCCGAGAA+AGG + chr3_4:48833083-48833102 None:intergenic 40.0%
CAGATGATAAGGGTTATCAC+AGG - chr3_4:48833180-48833199 Msa0504410:intron 40.0%
ATAAGGGTTATCACAGGATG+TGG - chr3_4:48833186-48833205 Msa0504410:intron 40.0%
! GATGTGGATCACATGGTTTT+GGG - chr3_4:48833202-48833221 Msa0504410:intron 40.0%
GTGGATCGAAACAAATTCGT+GGG + chr3_4:48833500-48833519 None:intergenic 40.0%
CCTGTGAAGAACAAAATTGG+TGG + chr3_4:48833519-48833538 None:intergenic 40.0%
! CCACCAATTTTGTTCTTCAC+AGG - chr3_4:48833516-48833535 Msa0504410:intron 40.0%
! CTTCTTGTATTGGTGGAAAG+TGG + chr3_4:48833560-48833579 None:intergenic 40.0%
CTTTCCACCAATACAAGAAG+AGG - chr3_4:48833560-48833579 Msa0504410:intron 40.0%
TCTTCCTCTTCTTGTATTGG+TGG + chr3_4:48833567-48833586 None:intergenic 40.0%
ACTTCCTCTTCTTGTTCTTC+CGG - chr3_4:48833737-48833756 Msa0504410:intron 40.0%
! GCTTTTCGTTCAATTATCGC+TGG + chr3_4:48833809-48833828 None:intergenic 40.0%
AAGTAACAACGCTTTAGCTG+CGG - chr3_4:48834156-48834175 Msa0504410:intron 40.0%
AAAACATTCTCCGTTTCGAG+TGG - chr3_4:48834262-48834281 Msa0504410:intron 40.0%
! TGGTGGTGTTTATAAAACCG+GGG - chr3_4:48834384-48834403 Msa0504410:intron 40.0%
TTATAAAACCGGGGAAACTG+AGG - chr3_4:48834393-48834412 Msa0504410:intron 40.0%
ATGGGAATCTATGGTTGAAG+AGG - chr3_4:48834441-48834460 Msa0504410:intron 40.0%
AGAGGCTTATAGAAACGAAG+AGG - chr3_4:48834459-48834478 Msa0504410:intron 40.0%
GAGGCTTATAGAAACGAAGA+GGG - chr3_4:48834460-48834479 Msa0504410:intron 40.0%
TCGTTGCACATGAATTTGAC+AGG - chr3_4:48834647-48834666 Msa0504410:intron 40.0%
ATGAAGCTACCAAAATTGGG+AGG + chr3_4:48834741-48834760 None:intergenic 40.0%
!! CCCAATTTTGGTAGCTTCAT+TGG - chr3_4:48834741-48834760 Msa0504410:intron 40.0%
! ATAAGTCTGGCTCATGAATC+AGG + chr3_4:48835597-48835616 None:intergenic 40.0%
GGAGGAGAAGTAAATAAGTC+TGG + chr3_4:48835610-48835629 None:intergenic 40.0%
CTTCAAGAGAGCTATAGAAG+TGG - chr3_4:48835858-48835877 Msa0504410:CDS 40.0%
TTATAAGCTTCAGCATCTGG+TGG + chr3_4:48835886-48835905 None:intergenic 40.0%
CTCCAAATAAGTCTCTTCTG+CGG + chr3_4:48835953-48835972 None:intergenic 40.0%
!! ATCGTTGAAGGGTGTTGTTG+GGG + chr3_4:48826236-48826255 None:intergenic 45.0%
!! GAATCGTTGAAGGGTGTTGT+TGG + chr3_4:48826238-48826257 None:intergenic 45.0%
GTTGGAGAAAACGAGGATCT+GGG + chr3_4:48826325-48826344 None:intergenic 45.0%
TGTTGGAGAAAACGAGGATC+TGG + chr3_4:48826326-48826345 None:intergenic 45.0%
CAACCAATGATGCTAAGACC+TGG + chr3_4:48826463-48826482 None:intergenic 45.0%
!! GCTTCTGAGATCTTAAGCAG+AGG - chr3_4:48826554-48826573 Msa0504410:CDS 45.0%
CTTAAGCAGAGGTTTGGGTA+TGG - chr3_4:48826565-48826584 Msa0504410:CDS 45.0%
TCTTCGTCTTCTTCGTGTAG+TGG - chr3_4:48826611-48826630 Msa0504410:CDS 45.0%
! TTGGATTTGGCTTCGACTTC+GGG - chr3_4:48826665-48826684 Msa0504410:CDS 45.0%
! GTTCTTCGGGTTCTTCAGAT+GGG - chr3_4:48826687-48826706 Msa0504410:CDS 45.0%
AGGGTGTGGTTGGGTTTAAA+GGG - chr3_4:48826732-48826751 Msa0504410:intron 45.0%
AAGAAGATTGTTGCGGTGAC+AGG - chr3_4:48826776-48826795 Msa0504410:intron 45.0%
AGAAGATTGTTGCGGTGACA+GGG - chr3_4:48826777-48826796 Msa0504410:intron 45.0%
!!! AGGGACTGTTTCGTCGATTT+TGG - chr3_4:48826796-48826815 Msa0504410:intron 45.0%
!!! GGGACTGTTTCGTCGATTTT+GGG - chr3_4:48826797-48826816 Msa0504410:intron 45.0%
!!! GGACTGTTTCGTCGATTTTG+GGG - chr3_4:48826798-48826817 Msa0504410:intron 45.0%
TGGGGAATGAATATGTGAGG+AGG - chr3_4:48826816-48826835 Msa0504410:intron 45.0%
GGGGAATGAATATGTGAGGA+GGG - chr3_4:48826817-48826836 Msa0504410:intron 45.0%
AATATGTGAGGAGGGATGGT+GGG - chr3_4:48826825-48826844 Msa0504410:intron 45.0%
ATCACAATCATCCCCAAGCA+TGG + chr3_4:48826912-48826931 None:intergenic 45.0%
! AAGTCTTATCCCACTAAGCG+TGG + chr3_4:48827304-48827323 None:intergenic 45.0%
ACGCTTAGTGGGATAAGACT+TGG - chr3_4:48827303-48827322 Msa0504410:intron 45.0%
ACGGTTAATGTTTGCCAGTC+TGG - chr3_4:48827571-48827590 Msa0504410:intron 45.0%
AATGTTTGCCAGTCTGGTGT+TGG - chr3_4:48827577-48827596 Msa0504410:intron 45.0%
GTGTTGTGAATCAAGGATCG+CGG - chr3_4:48827607-48827626 Msa0504410:intron 45.0%
TCAAGGATCGCGGAAAATAG+TGG - chr3_4:48827617-48827636 Msa0504410:intron 45.0%
! TAAGTGTTGTCGGCTATAGC+GGG + chr3_4:48827764-48827783 None:intergenic 45.0%
! CTAAGTGTTGTCGGCTATAG+CGG + chr3_4:48827765-48827784 None:intergenic 45.0%
TTCTTTCCAACTAGGCGGAA+TGG + chr3_4:48827912-48827931 None:intergenic 45.0%
! TGGTTTTTCTTCCGCCTTTG+CGG - chr3_4:48828209-48828228 Msa0504410:CDS 45.0%
GGTACAACCTGACTAACCAT+AGG + chr3_4:48828522-48828541 None:intergenic 45.0%
GTTGACTGTGTGTTGTGTGT+TGG - chr3_4:48828750-48828769 Msa0504410:CDS 45.0%
GTGATCTTGCCTCTCAAGTT+TGG - chr3_4:48828808-48828827 Msa0504410:CDS 45.0%
!! TGCCTCTCAAGTTTGGTGTA+AGG - chr3_4:48828815-48828834 Msa0504410:CDS 45.0%
CACCTTACACCAAACTTGAG+AGG + chr3_4:48828820-48828839 None:intergenic 45.0%
! TTTGGTGTAAGGTGTTTCGG+TGG - chr3_4:48828826-48828845 Msa0504410:CDS 45.0%
GCAACTCTGGTCAATTTGGA+AGG - chr3_4:48828948-48828967 Msa0504410:CDS 45.0%
TCTGGTCAATTTGGAAGGCA+TGG - chr3_4:48828953-48828972 Msa0504410:CDS 45.0%
ATCTCATCTACCACCACGTT+GGG + chr3_4:48829012-48829031 None:intergenic 45.0%
TATCTCATCTACCACCACGT+TGG + chr3_4:48829013-48829032 None:intergenic 45.0%
!!! TCGGCGTCGATCATTTCTTT+TGG - chr3_4:48829082-48829101 Msa0504410:intron 45.0%
TGCAAACAACTGAACTGCAG+AGG + chr3_4:48829127-48829146 None:intergenic 45.0%
ATCCAGAAATGCAGAACTGC+CGG + chr3_4:48829180-48829199 None:intergenic 45.0%
!!! GGTTGCTGCAGTTTTTTGTC+GGG - chr3_4:48829203-48829222 Msa0504410:intron 45.0%
!! CTGTTATGGCCTTGCTTTTG+TGG - chr3_4:48829227-48829246 Msa0504410:intron 45.0%
CCTCAACTACCACAAAAGCA+AGG + chr3_4:48829239-48829258 None:intergenic 45.0%
!! CCTTGCTTTTGTGGTAGTTG+AGG - chr3_4:48829236-48829255 Msa0504410:intron 45.0%
TTTCCTGTATTCAAGGCGGT+TGG - chr3_4:48829263-48829282 Msa0504410:intron 45.0%
CAACTTGGTCCCTCAATAGA+TGG - chr3_4:48829567-48829586 Msa0504410:CDS 45.0%
TGTGTATAATCCCAAGCCCT+GGG + chr3_4:48830016-48830035 None:intergenic 45.0%
CTTGGGATTATACACACTGC+TGG - chr3_4:48830020-48830039 Msa0504410:intron 45.0%
! CTGCTGGGTAATTTTTGCTC+TGG - chr3_4:48830036-48830055 Msa0504410:intron 45.0%
ACGACATAGATACGGGGATA+TGG + chr3_4:48830410-48830429 None:intergenic 45.0%
TACTATGTAACCGACCAACC+TGG - chr3_4:48830434-48830453 Msa0504410:CDS 45.0%
!! AACTAAGAAGCCAGGTTGGT+CGG + chr3_4:48830447-48830466 None:intergenic 45.0%
AGCAAACTAAGAAGCCAGGT+TGG + chr3_4:48830451-48830470 None:intergenic 45.0%
GCAAAGCAAACTAAGAAGCC+AGG + chr3_4:48830455-48830474 None:intergenic 45.0%
CAAGTCAAGCAATACATCCG+AGG + chr3_4:48830567-48830586 None:intergenic 45.0%
CTCGGATGTATTGCTTGACT+TGG - chr3_4:48830565-48830584 Msa0504410:intron 45.0%
TGCACATCTCTTTCATCGGA+AGG - chr3_4:48830909-48830928 Msa0504410:intron 45.0%
!! ATATGGGGTCTGGGATCTTT+TGG - chr3_4:48830948-48830967 Msa0504410:CDS 45.0%
AAGGACTCTAACACCTTCTG+AGG + chr3_4:48831463-48831482 None:intergenic 45.0%
AAAATGCAGTCATTGGGACC+TGG - chr3_4:48831547-48831566 Msa0504410:intron 45.0%
!!! TCATTGGGACCTGGTTTTGA+TGG - chr3_4:48831556-48831575 Msa0504410:intron 45.0%
TTTGGACGACCATCAAAACC+AGG + chr3_4:48831568-48831587 None:intergenic 45.0%
TGCTGAGGTTCTGCAACATT+TGG + chr3_4:48831586-48831605 None:intergenic 45.0%
CCCCTCATAATGTGAGGAAA+AGG - chr3_4:48831706-48831725 Msa0504410:intron 45.0%
GAGAGGAATATCACGCCTTT+AGG - chr3_4:48831900-48831919 Msa0504410:CDS 45.0%
CTGTCTTGCATCTTGCCTAA+AGG + chr3_4:48831918-48831937 None:intergenic 45.0%
CAGCAGTGGGATTCAGTTAA+AGG - chr3_4:48831935-48831954 Msa0504410:CDS 45.0%
GTTCTTCGAGCCAGTTGATT+TGG - chr3_4:48832012-48832031 Msa0504410:intron 45.0%
! GAGAGGGTTGACAATTTTGC+AGG - chr3_4:48832059-48832078 Msa0504410:intron 45.0%
TGCCGCATATCTTTCTGATC+AGG - chr3_4:48832116-48832135 Msa0504410:intron 45.0%
TAAAAGACACCACCAAAGGG+TGG - chr3_4:48832447-48832466 Msa0504410:intron 45.0%
!!! ATGTTTTTGGGCCATGAAGG+TGG - chr3_4:48832647-48832666 Msa0504410:intron 45.0%
!!! TGTTTTTGGGCCATGAAGGT+GGG - chr3_4:48832648-48832667 Msa0504410:intron 45.0%
AGCTCAGAAAGCAGACACTA+AGG - chr3_4:48832732-48832751 Msa0504410:intron 45.0%
GCTAGTGGTATGCAGAAACA+AGG - chr3_4:48832922-48832941 Msa0504410:intron 45.0%
ATCACAGGATGTGGATCACA+TGG - chr3_4:48833195-48833214 Msa0504410:intron 45.0%
! GGATGTGGATCACATGGTTT+TGG - chr3_4:48833201-48833220 Msa0504410:intron 45.0%
!! TCGTACCGATTGTTTCAGCT+TGG + chr3_4:48833232-48833251 None:intergenic 45.0%
GGTGGATCGAAACAAATTCG+TGG + chr3_4:48833501-48833520 None:intergenic 45.0%
TCTTCACAGGTCTCGATCTT+TGG - chr3_4:48833529-48833548 Msa0504410:intron 45.0%
AGAACCGGAAGAACAAGAAG+AGG + chr3_4:48833744-48833763 None:intergenic 45.0%
TCTTGTTCTTCCGGTTCTTC+CGG - chr3_4:48833746-48833765 Msa0504410:intron 45.0%
! TGCCGTTAATTTTGAGCCAC+CGG - chr3_4:48833775-48833794 Msa0504410:intron 45.0%
CTCCGGTGGCTCAAAATTAA+CGG + chr3_4:48833780-48833799 None:intergenic 45.0%
TGAACGAAAAGCGAATAGCG+TGG - chr3_4:48833817-48833836 Msa0504410:intron 45.0%
GTCATTGTGAACTTCGACGA+TGG + chr3_4:48834206-48834225 None:intergenic 45.0%
GAGTGGAAGTAATACTGCCT+CGG - chr3_4:48834279-48834298 Msa0504410:intron 45.0%
AGTAATACTGCCTCGGTTGA+TGG - chr3_4:48834286-48834305 Msa0504410:intron 45.0%
GGTGGGAAATATAAACCGGT+GGG - chr3_4:48834322-48834341 Msa0504410:intron 45.0%
GTGGGAAATATAAACCGGTG+GGG - chr3_4:48834323-48834342 Msa0504410:intron 45.0%
AAATATAAACCGGTGGGGAG+TGG - chr3_4:48834328-48834347 Msa0504410:intron 45.0%
!! GGACGAACCGGTTTTTCTAA+TGG - chr3_4:48834364-48834383 Msa0504410:intron 45.0%
!! CGAACCGGTTTTTCTAATGG+TGG - chr3_4:48834367-48834386 Msa0504410:intron 45.0%
ATGTGCTTGGTACGACTGAA+AGG + chr3_4:48835690-48835709 None:intergenic 45.0%
CGCAGAAGAGACTTATTTGG+AGG - chr3_4:48835951-48835970 Msa0504410:CDS 45.0%
!! GCAGCATAATAGGTGTTGCT+AGG + chr3_4:48835991-48836010 None:intergenic 45.0%
TCTATGGAATACTGGTGGAG+AGG - chr3_4:48836026-48836045 Msa0504410:CDS 45.0%
!!! TTTTCAATGGGGATGGGTTG+AGG - chr3_4:48836219-48836238 Msa0504410:five_prime_UTR 45.0%
!!! TTTAATTTTTTTCTTATTTT+CGG + chr3_4:48828391-48828410 None:intergenic 5.0%
!!! TTTAATTTTTTTTTTTTCAA+TGG - chr3_4:48836206-48836225 Msa0504410:five_prime_UTR 5.0%
!!! TTAATTTTTTTTTTTTCAAT+GGG - chr3_4:48836207-48836226 Msa0504410:five_prime_UTR 5.0%
AGGAAAACGGGGTCGAAGAT+TGG + chr3_4:48826278-48826297 None:intergenic 50.0%
AAGCAGAGGTTTGGGTATGG+TGG - chr3_4:48826568-48826587 Msa0504410:CDS 50.0%
TCGTCTTCTTCGTGTAGTGG+TGG - chr3_4:48826614-48826633 Msa0504410:CDS 50.0%
AGTGGTGGTAGCACTAGCAA+TGG - chr3_4:48826629-48826648 Msa0504410:CDS 50.0%
! GGTTCTTCGGGTTCTTCAGA+TGG - chr3_4:48826686-48826705 Msa0504410:CDS 50.0%
! GGGTTCTTCAGATGGGTTTG+TGG - chr3_4:48826694-48826713 Msa0504410:intron 50.0%
! TTCAGATGGGTTTGTGGAGC+AGG - chr3_4:48826700-48826719 Msa0504410:intron 50.0%
GGTTTGTGGAGCAGGTTTGT+GGG - chr3_4:48826708-48826727 Msa0504410:intron 50.0%
GTTTGTGGAGCAGGTTTGTG+GGG - chr3_4:48826709-48826728 Msa0504410:intron 50.0%
! GAGGGTGTGGTTGGGTTTAA+AGG - chr3_4:48826731-48826750 Msa0504410:intron 50.0%
GGGTGTGGTTGGGTTTAAAG+GGG - chr3_4:48826733-48826752 Msa0504410:intron 50.0%
GGTGTGGTTGGGTTTAAAGG+GGG - chr3_4:48826734-48826753 Msa0504410:intron 50.0%
GTGTGGTTGGGTTTAAAGGG+GGG - chr3_4:48826735-48826754 Msa0504410:intron 50.0%
GAATATGTGAGGAGGGATGG+TGG - chr3_4:48826824-48826843 Msa0504410:intron 50.0%
GGTGGGAGGAAGAAGAAGTT+TGG - chr3_4:48826842-48826861 Msa0504410:intron 50.0%
CGAGCAGAGGATACCTGTTT+CGG - chr3_4:48827103-48827122 Msa0504410:intron 50.0%
CTTATCCCACTAAGCGTGGT+CGG + chr3_4:48827300-48827319 None:intergenic 50.0%
TGTAGTCCATTCCGCCTAGT+TGG - chr3_4:48827903-48827922 Msa0504410:CDS 50.0%
TTTCTTCCGCCTTTGCGGAT+TGG - chr3_4:48828214-48828233 Msa0504410:CDS 50.0%
AAGGCAAAGCCAATCCGCAA+AGG + chr3_4:48828226-48828245 None:intergenic 50.0%
TTCCTTAGCACACCTTGTGC+TGG - chr3_4:48828285-48828304 Msa0504410:CDS 50.0%
TCCTTAGCACACCTTGTGCT+GGG - chr3_4:48828286-48828305 Msa0504410:CDS 50.0%
AAAATGGCCTTCCCAGCACA+AGG + chr3_4:48828300-48828319 None:intergenic 50.0%
! TGTAAGGTGTTTCGGTGGCT+TGG - chr3_4:48828831-48828850 Msa0504410:CDS 50.0%
TCTCATCTACCACCACGTTG+GGG + chr3_4:48829011-48829030 None:intergenic 50.0%
!! GACGCCGACAGTTGATAAGT+AGG + chr3_4:48829070-48829089 None:intergenic 50.0%
TGATTTCGGCCCCTATTTCC+CGG - chr3_4:48829158-48829177 Msa0504410:intron 50.0%
TGCAGAACTGCCGGGAAATA+GGG + chr3_4:48829171-48829190 None:intergenic 50.0%
ATGCAGAACTGCCGGGAAAT+AGG + chr3_4:48829172-48829191 None:intergenic 50.0%
TCCAGAAATGCAGAACTGCC+GGG + chr3_4:48829179-48829198 None:intergenic 50.0%
ACTCCAACCGCCTTGAATAC+AGG + chr3_4:48829269-48829288 None:intergenic 50.0%
!! GTATCGGTTCACTAGTCACG+AGG - chr3_4:48829317-48829336 Msa0504410:intron 50.0%
AGGCTGCTTGTTTGTAGCTG+TGG - chr3_4:48829337-48829356 Msa0504410:intron 50.0%
GGCTGCTTGTTTGTAGCTGT+GGG - chr3_4:48829338-48829357 Msa0504410:intron 50.0%
GCTGCTTGTTTGTAGCTGTG+GGG - chr3_4:48829339-48829358 Msa0504410:intron 50.0%
GTCGTATCGTACCATGCATC+CGG - chr3_4:48829828-48829847 Msa0504410:intron 50.0%
TCGTATCGTACCATGCATCC+GGG - chr3_4:48829829-48829848 Msa0504410:intron 50.0%
AACTAACAAGCCCGGATGCA+TGG + chr3_4:48829842-48829861 None:intergenic 50.0%
TGGGTGGTGAAGAGAAGCAA+TGG + chr3_4:48829997-48830016 None:intergenic 50.0%
ATTGCTTCTCTTCACCACCC+AGG - chr3_4:48829996-48830015 Msa0504410:intron 50.0%
TTGCTTCTCTTCACCACCCA+GGG - chr3_4:48829997-48830016 Msa0504410:intron 50.0%
GTGTGTATAATCCCAAGCCC+TGG + chr3_4:48830017-48830036 None:intergenic 50.0%
CGAGAACTGCAGTGCAAACA+AGG + chr3_4:48830271-48830290 None:intergenic 50.0%
CTACATCCCCTCACAGTACA+TGG - chr3_4:48830840-48830859 Msa0504410:intron 50.0%
GCAAGATGCAAGACAGCAGT+GGG - chr3_4:48831922-48831941 Msa0504410:CDS 50.0%
TGTTACAAGCCACCCTTTGG+TGG + chr3_4:48832459-48832478 None:intergenic 50.0%
ACAAGGTAGACCCACCTTCA+TGG + chr3_4:48832661-48832680 None:intergenic 50.0%
ATCGCTGGTATAAACTCCGG+TGG + chr3_4:48833794-48833813 None:intergenic 50.0%
ACGATGGAAGAAGTCTCCAC+CGG + chr3_4:48834190-48834209 None:intergenic 50.0%
!! AATACTGCCTCGGTTGATGG+AGG - chr3_4:48834289-48834308 Msa0504410:intron 50.0%
CCGGTTTATATTTCCCACCG+CGG + chr3_4:48834321-48834340 None:intergenic 50.0%
CCGCGGTGGGAAATATAAAC+CGG - chr3_4:48834318-48834337 Msa0504410:intron 50.0%
CGGTGGGAAATATAAACCGG+TGG - chr3_4:48834321-48834340 Msa0504410:intron 50.0%
TAAAACCGGGGAAACTGAGG+TGG - chr3_4:48834396-48834415 Msa0504410:intron 50.0%
TTCATCCACCTCAGTTTCCC+CGG + chr3_4:48834404-48834423 None:intergenic 50.0%
GGCTCATGAATCAGGTACAC+TGG + chr3_4:48835589-48835608 None:intergenic 50.0%
GGCCGCAGAAGAGACTTATT+TGG - chr3_4:48835948-48835967 Msa0504410:CDS 50.0%
! GGCTTCGACTTCGGGTTCTT+CGG - chr3_4:48826673-48826692 Msa0504410:CDS 55.0%
! GCTTCGACTTCGGGTTCTTC+GGG - chr3_4:48826674-48826693 Msa0504410:CDS 55.0%
GGGTTTGTGGAGCAGGTTTG+TGG - chr3_4:48826707-48826726 Msa0504410:intron 55.0%
! TTTGTGGGGAGGGTGTGGTT+GGG - chr3_4:48826723-48826742 Msa0504410:intron 55.0%
GTCTTTGCAGTTGCGAGCAG+AGG - chr3_4:48827090-48827109 Msa0504410:intron 55.0%
ACTAAGCGTGGTCGGCTACA+TGG + chr3_4:48827292-48827311 None:intergenic 55.0%
ATGTAGCCGACCACGCTTAG+TGG - chr3_4:48827291-48827310 Msa0504410:intron 55.0%
TGTAGCCGACCACGCTTAGT+GGG - chr3_4:48827292-48827311 Msa0504410:intron 55.0%
CTGCTTCTCCAACACCAGAC+TGG + chr3_4:48827588-48827607 None:intergenic 55.0%
GCAAAGCCAATCCGCAAAGG+CGG + chr3_4:48828223-48828242 None:intergenic 55.0%
TCCCAGCACAAGGTGTGCTA+AGG + chr3_4:48828290-48828309 None:intergenic 55.0%
TAGCACACCTTGTGCTGGGA+AGG - chr3_4:48828290-48828309 Msa0504410:CDS 55.0%
!! GTGCTGGGAAGGCCATTTTG+AGG - chr3_4:48828301-48828320 Msa0504410:CDS 55.0%
!! CTGGGAAGGCCATTTTGAGG+TGG - chr3_4:48828304-48828323 Msa0504410:CDS 55.0%
GCAGAACTGCCGGGAAATAG+GGG + chr3_4:48829170-48829189 None:intergenic 55.0%
TCCCGGCAGTTCTGCATTTC+TGG - chr3_4:48829175-48829194 Msa0504410:intron 55.0%
GTATAATCCCAAGCCCTGGG+TGG + chr3_4:48830013-48830032 None:intergenic 55.0%
AGGACACGGGGATGCAGAAA+AGG + chr3_4:48830129-48830148 None:intergenic 55.0%
CAAGCAATACATCCGAGGCC+TGG + chr3_4:48830562-48830581 None:intergenic 55.0%
GGCAAGATGCAAGACAGCAG+TGG - chr3_4:48831921-48831940 Msa0504410:CDS 55.0%
GGCATGAGAACCGGAAGAAC+CGG + chr3_4:48833759-48833778 None:intergenic 55.0%
TTTAGCTGCGGTTGCAACCC+CGG - chr3_4:48834168-48834187 Msa0504410:intron 55.0%
GATGGAAGAAGTCTCCACCG+GGG + chr3_4:48834188-48834207 None:intergenic 55.0%
CGATGGAAGAAGTCTCCACC+GGG + chr3_4:48834189-48834208 None:intergenic 55.0%
TTTGACGGGGATGGACGAAC+CGG - chr3_4:48834352-48834371 Msa0504410:intron 55.0%
!! GGGTGTTGTTGGGGAAGCGA+CGG + chr3_4:48826227-48826246 None:intergenic 60.0%
TGTGGAGCAGGTTTGTGGGG+AGG - chr3_4:48826712-48826731 Msa0504410:intron 60.0%
GTGGAGCAGGTTTGTGGGGA+GGG - chr3_4:48826713-48826732 Msa0504410:intron 60.0%
! GTTTGTGGGGAGGGTGTGGT+TGG - chr3_4:48826722-48826741 Msa0504410:intron 60.0%
!! ATGTGAGGAGGGATGGTGGG+AGG - chr3_4:48826828-48826847 Msa0504410:intron 60.0%
TCTCTTCACCACCCAGGGCT+TGG - chr3_4:48830002-48830021 Msa0504410:intron 60.0%
CTCTTCACCACCCAGGGCTT+GGG - chr3_4:48830003-48830022 Msa0504410:intron 60.0%
!! GGGGTCTGGGATCTTTTGGC+AGG - chr3_4:48830952-48830971 Msa0504410:CDS 60.0%
GCAGGACGGAGGTGACAAGA+GGG + chr3_4:48831055-48831074 None:intergenic 60.0%
TGCAGGACGGAGGTGACAAG+AGG + chr3_4:48831056-48831075 None:intergenic 60.0%
ATACTGCGAGGACGCTGCTG+AGG + chr3_4:48831601-48831620 None:intergenic 60.0%
!! GCCTCGGTTGATGGAGGAAG+TGG - chr3_4:48834295-48834314 Msa0504410:intron 60.0%
GCCACTTCCTCCATCAACCG+AGG + chr3_4:48834299-48834318 None:intergenic 60.0%
! GTTGATGGAGGAAGTGGCCG+CGG - chr3_4:48834301-48834320 Msa0504410:intron 60.0%
CCGTCAAATCCACTCCCCAC+CGG + chr3_4:48834340-48834359 None:intergenic 60.0%
! CCGGTGGGGAGTGGATTTGA+CGG - chr3_4:48834337-48834356 Msa0504410:intron 60.0%
! CGGTGGGGAGTGGATTTGAC+GGG - chr3_4:48834338-48834357 Msa0504410:intron 60.0%
! GGTGGGGAGTGGATTTGACG+GGG - chr3_4:48834339-48834358 Msa0504410:intron 60.0%
! GGGAGTGGATTTGACGGGGA+TGG - chr3_4:48834343-48834362 Msa0504410:intron 60.0%
!! TGAGACACGAGGGCATCACG+TGG + chr3_4:48835631-48835650 None:intergenic 60.0%
GCAGGTTTGTGGGGAGGGTG+TGG - chr3_4:48826718-48826737 Msa0504410:intron 65.0%
CCACGTTGGGGTCGCATTCC+TGG + chr3_4:48828999-48829018 None:intergenic 65.0%
CCAGGAATGCGACCCCAACG+TGG - chr3_4:48828996-48829015 Msa0504410:CDS 65.0%
GGAATGCGACCCCAACGTGG+TGG - chr3_4:48828999-48829018 Msa0504410:CDS 65.0%
ATGGAGGAAGTGGCCGCGGT+GGG - chr3_4:48834305-48834324 Msa0504410:intron 65.0%
!! GACACGAGGGCATCACGTGG+AGG + chr3_4:48835628-48835647 None:intergenic 65.0%
AGCTGCGGTTGCAACCCCGG+TGG - chr3_4:48834171-48834190 Msa0504410:intron 70.0%
GATGGAGGAAGTGGCCGCGG+TGG - chr3_4:48834304-48834323 Msa0504410:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 48826203 48836353 48826203 ID=Msa0504410;Name=Msa0504410
chr3_4 mRNA 48826203 48836353 48826203 ID=Msa0504410-mRNA-1;Parent=Msa0504410;Name=Msa0504410-mRNA-1;_AED=0.10;_eAED=0.11;_QI=150|0.72|0.66|1|1|1|12|264|930
chr3_4 exon 48826203 48826710 48826203 ID=Msa0504410-mRNA-1:exon:10514;Parent=Msa0504410-mRNA-1
chr3_4 exon 48827888 48829018 48827888 ID=Msa0504410-mRNA-1:exon:10513;Parent=Msa0504410-mRNA-1
chr3_4 exon 48829340 48829373 48829340 ID=Msa0504410-mRNA-1:exon:10512;Parent=Msa0504410-mRNA-1
chr3_4 exon 48829513 48829619 48829513 ID=Msa0504410-mRNA-1:exon:10511;Parent=Msa0504410-mRNA-1
chr3_4 exon 48829777 48829844 48829777 ID=Msa0504410-mRNA-1:exon:10510;Parent=Msa0504410-mRNA-1
chr3_4 exon 48830419 48830475 48830419 ID=Msa0504410-mRNA-1:exon:10509;Parent=Msa0504410-mRNA-1
chr3_4 exon 48830586 48830662 48830586 ID=Msa0504410-mRNA-1:exon:10508;Parent=Msa0504410-mRNA-1
chr3_4 exon 48830940 48831169 48830940 ID=Msa0504410-mRNA-1:exon:10507;Parent=Msa0504410-mRNA-1
chr3_4 exon 48831583 48831668 48831583 ID=Msa0504410-mRNA-1:exon:10506;Parent=Msa0504410-mRNA-1
chr3_4 exon 48831871 48831993 48831871 ID=Msa0504410-mRNA-1:exon:10505;Parent=Msa0504410-mRNA-1
chr3_4 exon 48834403 48834428 48834403 ID=Msa0504410-mRNA-1:exon:10504;Parent=Msa0504410-mRNA-1
chr3_4 exon 48835594 48836353 48835594 ID=Msa0504410-mRNA-1:exon:10503;Parent=Msa0504410-mRNA-1
chr3_4 five_prime_UTR 48836204 48836353 48836204 ID=Msa0504410-mRNA-1:five_prime_utr;Parent=Msa0504410-mRNA-1
chr3_4 CDS 48835594 48836203 48835594 ID=Msa0504410-mRNA-1:cds;Parent=Msa0504410-mRNA-1
chr3_4 CDS 48834403 48834428 48834403 ID=Msa0504410-mRNA-1:cds;Parent=Msa0504410-mRNA-1
chr3_4 CDS 48831871 48831993 48831871 ID=Msa0504410-mRNA-1:cds;Parent=Msa0504410-mRNA-1
chr3_4 CDS 48831583 48831668 48831583 ID=Msa0504410-mRNA-1:cds;Parent=Msa0504410-mRNA-1
chr3_4 CDS 48830940 48831169 48830940 ID=Msa0504410-mRNA-1:cds;Parent=Msa0504410-mRNA-1
chr3_4 CDS 48830586 48830662 48830586 ID=Msa0504410-mRNA-1:cds;Parent=Msa0504410-mRNA-1
chr3_4 CDS 48830419 48830475 48830419 ID=Msa0504410-mRNA-1:cds;Parent=Msa0504410-mRNA-1
chr3_4 CDS 48829777 48829844 48829777 ID=Msa0504410-mRNA-1:cds;Parent=Msa0504410-mRNA-1
chr3_4 CDS 48829513 48829619 48829513 ID=Msa0504410-mRNA-1:cds;Parent=Msa0504410-mRNA-1
chr3_4 CDS 48829340 48829373 48829340 ID=Msa0504410-mRNA-1:cds;Parent=Msa0504410-mRNA-1
chr3_4 CDS 48827888 48829018 48827888 ID=Msa0504410-mRNA-1:cds;Parent=Msa0504410-mRNA-1
chr3_4 CDS 48826467 48826710 48826467 ID=Msa0504410-mRNA-1:cds;Parent=Msa0504410-mRNA-1
chr3_4 three_prime_UTR 48826203 48826466 48826203 ID=Msa0504410-mRNA-1:three_prime_utr;Parent=Msa0504410-mRNA-1
Gene Sequence

>Msa0504410

ATGAAGAATTCACGAAAAAAGAAGAAGCAAAAACCTCCCAAAAAAATGGAAGAAAACAAAGAATCTTCAAAAGGGGTTATCGAAAAACAACAACAAGAGACAAAAAACCAGGTCTTAGCATCATTGGTTGAAGCTTTTTCGTTGTCTTCAATGGAAGAAGCAGTTGCAGCATATGATGTTGCAAAGGGTGATCCAAATAAAGCTTCTGAGATCTTAAGCAGAGGTTTGGGTATGGTGGAGAACGTTGAATACCCTTTTTCTTCGTCTTCTTCGTGTAGTGGTGGTAGCACTAGCAATGGTTTTTCTTCTGGTTTGGATTTGGCTTCGACTTCGGGTTCTTCGGGTTCTTCAGATGGGTTTGTGGAGCAGGTTTGTGGGGAGGGTGTGGTTGGGTTTAAAGGGGGGAAGTTGCAGAAGCAGAAGAAGAAGATTGTTGCGGTGACAGGGACTGTTTCGTCGATTTTGGGGAATGAATATGTGAGGAGGGATGGTGGGAGGAAGAAGAAGTTTGGAAATGAGGTTGTTGATCATGAAGAAGCTGAACAGTTTCTGTATTCCATGCTTGGGGATGATTGTGATCTTAACTTGGCTGTTGTTAGAGATGTTCTTTGTCAATGCGGATATGATGTTGAAAAGGCCTCGGATGTATTGCTTGACTTGGCTGCGAATGAGCGATCCAGTAATGATAGAAATTCTGATTACAGAGTAGACAACATGGACGGTACGAGATTCCTTGTTGATTATGATCATAATGATAGTTTGATAGATAGAAGATCAGAGTGCACATCTCTTTCATCGGAAGGTGACTTTTCTGATAATATATGGGGTCTGGGATCTTTTGGCAGGAATTATGCGGAGGTCCTCACTAGTTCTAAAGCTAATTCTCATATTAGCCCAGGATGCACAAAGTTAGAACTTCCTCAGAAGGTGTTAGAGTCCTTGTTTAACATTCCCAAAAGCTCTGAACATGACAAAGGTACCATGGATTGGAGAAAAATAGCAAAGAAAATGCAGTCATTGGGACCTGGTTTTGATGGTCGTCCAAATGTTGCAGAACCTCAGCAGCGTCCTCGCACTAAAGGAGAGGAATATCACGCCTTTAGGCAAGATGCAAGACAGCAGTGGGATTCAGTTAAAGGTTACTTTCAGAAAGCTGCAACTGCATATACTAATGGAGATCGAGGATATGCCGCATATCTTTCTGATCAGGGTAAAGAACAAACTAAAATAGCTCAGAAAGCAGACACTAAGGCAAGCCATGACATATTTGTTGCTAGAAACAAGGATATAGAAAATGTGATAACTATTGATTTGCATGGGCAGCATGTGAAACCAGCAATGAGAATGCTGAAACTTCACCTTCTGTTTGGATCATATGTTCCCTATGATAAGGGTTATCACAGGATGTGGATCACATGGTCTCGATCTTTGGAGAACCCACTTTCCACCAATACAAGAAGAGGAAGAAGAACAATAAGAAGAGCTTTCAGTGCAAGCTTAGATTCGTTCTTCTCAGACGAAGAATTCGCGAAGAAAATCGAAGATTTAGCTATCAGATTCCAAATCTCGAACGAAAATAATGCAATTATGGATTTGGAAAGTTTTGAAGAGAGTTTAACTTCCTCTTCTTGTTCTTCCGGTTCTTCCGGTTCTCATGCCGTTAATTTTGAGCCACCGGAGTTTATACCAGCGATAATTGAACGAAAAGCGAATAGCGTGGAGCTTCCGTTTTCGCTGAGAATCTTGAAAAAGAAACTGAAGCTGAAGGAAGAATTCAGAGATGTTGGTGAATCAGCATGTTGTTCAGTGAAAAAAGCTTTTTCTTCTATGGTGTTCATCATTAGAGAACTTCAATGTTTCACTTTACAAATGAGAGAGGTTCTTTTGTATGAAGATTTACAAGGGATTCTTGAAAGAGTGCAAAAGGAAATGCACGCTTCTTTTGTTTGGTTGTTTCAACAATATTTTTCACATACACCAACGTTAATGGTTTATGTTATGATACTTCTTGCAAATTTTACAGTCCATTCTATGTCAAGTAACAACGCTTTAGCTGCGGTTGCAACCCCGGTGGAGACTTCTTCCATCGTCGAAGTTCACAATGACAATCATGTCTTTAAGAAATTTGATTCTTCTGTTATTAAAACATTCTCCGTTTCGAGTGGAAGTAATACTGCCTCGGTTGATGGAGGAAGTGGCCGCGGTGGGAAATATAAACCGGTGGGGAGTGGATTTGACGGGGATGGACGAACCGGTTTTTCTAATGGTGGTGTTTATAAAACCGGGGAAACTGAGGTGGATGAAGAAGAAGAAACTAAGATATGGGAATCTATGGTTGAAGAGGCTTATAGAAACGAAGAGGGTTTGGATCATGAAGAAATGAAACAATTTGTTTCACCAGTTTCTGCTAAGATTGAATCTGATGATTATGCAGAGTATTTGAGAACAGAACTTGTTTATCAAACAGGGTTGTCTCAAGAACCAAACAATGCTTTGTTACTTGCGAACTATGCTCAGTTTCTTTACATCGTTGCACATGAATTTGACAGGGCAGAAGAATACTTCAAGAGAGCTATAGAAGTGGAGCCACCAGATGCTGAAGCTTATAATAAATACGCAACCTTCTTATGGAAAGTGAAAAATGATTTGTGGGCCGCAGAAGAGACTTATTTGGAGGCTATTTCAGCTGAACCTAGCAACACCTATTATGCTGCAAATTATGCTCATTTTCTATGGAATACTGGTGGAGAGGATACATGTTTTCCTCTATCTGATTCTTCTCAAGAAGTTTGA
Protein sequence

>Msa0504410

MKNSRKKKKQKPPKKMEENKESSKGVIEKQQQETKNQVLASLVEAFSLSSMEEAVAAYDVAKGDPNKASEILSRGLGMVENVEYPFSSSSSCSGGSTSNGFSSGLDLASTSGSSGSSDGFVEQVCGEGVVGFKGGKLQKQKKKIVAVTGTVSSILGNEYVRRDGGRKKKFGNEVVDHEEAEQFLYSMLGDDCDLNLAVVRDVLCQCGYDVEKASDVLLDLAANERSSNDRNSDYRVDNMDGTRFLVDYDHNDSLIDRRSECTSLSSEGDFSDNIWGLGSFGRNYAEVLTSSKANSHISPGCTKLELPQKVLESLFNIPKSSEHDKGTMDWRKIAKKMQSLGPGFDGRPNVAEPQQRPRTKGEEYHAFRQDARQQWDSVKGYFQKAATAYTNGDRGYAAYLSDQGKEQTKIAQKADTKASHDIFVARNKDIENVITIDLHGQHVKPAMRMLKLHLLFGSYVPYDKGYHRMWITWSRSLENPLSTNTRRGRRTIRRAFSASLDSFFSDEEFAKKIEDLAIRFQISNENNAIMDLESFEESLTSSSCSSGSSGSHAVNFEPPEFIPAIIERKANSVELPFSLRILKKKLKLKEEFRDVGESACCSVKKAFSSMVFIIRELQCFTLQMREVLLYEDLQGILERVQKEMHASFVWLFQQYFSHTPTLMVYVMILLANFTVHSMSSNNALAAVATPVETSSIVEVHNDNHVFKKFDSSVIKTFSVSSGSNTASVDGGSGRGGKYKPVGSGFDGDGRTGFSNGGVYKTGETEVDEEEETKIWESMVEEAYRNEEGLDHEEMKQFVSPVSAKIESDDYAEYLRTELVYQTGLSQEPNNALLLANYAQFLYIVAHEFDRAEEYFKRAIEVEPPDAEAYNKYATFLWKVKNDLWAAEETYLEAISAEPSNTYYAANYAHFLWNTGGEDTCFPLSDSSQEV*