Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0865060 | ACJ85836.1 | 86.957 | 184 | 5 | 1 | 27 | 210 | 65 | 229 | 8.72e-107 | 318 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0865060 | sp|Q93YB2|AADH2_PEA | 84.239 | 184 | 10 | 1 | 27 | 210 | 311 | 475 | 2.26e-106 | 318 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0865060 | B7FM53 | 86.957 | 184 | 5 | 1 | 27 | 210 | 65 | 229 | 4.17e-107 | 318 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003700 | Msa0865060 | 0.806887 | 6.611551e-50 | -8.615850e-47 |
| Msa0091600 | Msa0865060 | 0.865076 | 7.676220e-65 | -8.615850e-47 |
| Msa0693380 | Msa0865060 | 0.803937 | 2.746713e-49 | -8.615850e-47 |
| Msa0731270 | Msa0865060 | 0.843991 | 9.967175e-59 | -8.615850e-47 |
| Msa0743730 | Msa0865060 | 0.806165 | 9.389863e-50 | -8.615850e-47 |
| Msa0744040 | Msa0865060 | 0.807856 | 4.119319e-50 | -8.615850e-47 |
| Msa0771280 | Msa0865060 | 0.837936 | 3.871913e-57 | -8.615850e-47 |
| Msa0811130 | Msa0865060 | 0.838831 | 2.275690e-57 | -8.615850e-47 |
| Msa0841340 | Msa0865060 | 0.807561 | 4.760950e-50 | -8.615850e-47 |
| Msa0131770 | Msa0865060 | 0.802297 | 5.997434e-49 | -8.615850e-47 |
| Msa0146260 | Msa0865060 | 0.800499 | 1.400466e-48 | -8.615850e-47 |
| Msa0211150 | Msa0865060 | 0.801030 | 1.091064e-48 | -8.615850e-47 |
| Msa0223690 | Msa0865060 | 0.814420 | 1.554589e-51 | -8.615850e-47 |
| Msa0423900 | Msa0865060 | 0.802385 | 5.752121e-49 | -8.615850e-47 |
| Msa0479170 | Msa0865060 | 0.808402 | 3.152851e-50 | -8.615850e-47 |
| Msa0333600 | Msa0865060 | 0.944696 | 1.212417e-103 | -8.615850e-47 |
| Msa0495320 | Msa0865060 | 0.807940 | 3.953911e-50 | -8.615850e-47 |
| Msa0507680 | Msa0865060 | 0.803180 | 3.942799e-49 | -8.615850e-47 |
| Msa0546540 | Msa0865060 | 0.840360 | 9.114037e-58 | -8.615850e-47 |
| Msa0848530 | Msa0865060 | 0.866189 | 3.419180e-65 | -8.615850e-47 |
| Msa0865060 | Msa0884290 | 0.801909 | 7.208462e-49 | -8.615850e-47 |
| Msa0865060 | Msa0951280 | 0.836385 | 9.652235e-57 | -8.615850e-47 |
| Msa0865060 | Msa0969520 | 0.827557 | 1.465083e-54 | -8.615850e-47 |
| Msa0865060 | Msa1082500 | 0.806171 | 9.361832e-50 | -8.615850e-47 |
| Msa0865060 | Msa1085200 | 0.801697 | 7.966795e-49 | -8.615850e-47 |
| Msa0865060 | Msa1102770 | 0.801633 | 8.213973e-49 | -8.615850e-47 |
| Msa0865060 | Msa1154710 | 0.804550 | 2.046931e-49 | -8.615850e-47 |
| Msa0865060 | Msa1199570 | 0.800928 | 1.144916e-48 | -8.615850e-47 |
| Msa0865060 | Msa1328710 | 0.805176 | 1.514429e-49 | -8.615850e-47 |
| Msa0865060 | Msa1341520 | 0.820034 | 8.488389e-53 | -8.615850e-47 |
| Msa0865060 | Msa1375560 | 0.801010 | 1.101414e-48 | -8.615850e-47 |
| Msa0865060 | Msa1435270 | 0.803649 | 3.151403e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0865060 | MtrunA17_Chr4g0059521 | 87.500 | 184 | 4 | 1 | 27 | 210 | 311 | 475 | 3.82e-110 | 325 |
| Msa0865060 | MtrunA17_Chr3g0118121 | 71.795 | 195 | 33 | 3 | 17 | 210 | 302 | 475 | 1.44e-94 | 285 |
| Msa0865060 | MtrunA17_Chr3g0118081 | 73.481 | 181 | 29 | 1 | 30 | 210 | 344 | 505 | 2.36e-91 | 278 |
| Msa0865060 | MtrunA17_Chr6g0485301 | 37.870 | 169 | 84 | 2 | 39 | 207 | 332 | 479 | 6.02e-37 | 135 |
| Msa0865060 | MtrunA17_Chr6g0485311 | 37.572 | 173 | 87 | 1 | 35 | 207 | 326 | 477 | 1.76e-36 | 133 |
| Msa0865060 | MtrunA17_Chr8g0390631 | 37.870 | 169 | 84 | 2 | 39 | 207 | 324 | 471 | 9.81e-36 | 131 |
| Msa0865060 | MtrunA17_Chr8g0390651 | 37.278 | 169 | 85 | 2 | 39 | 207 | 333 | 480 | 5.69e-35 | 129 |
| Msa0865060 | MtrunA17_Chr8g0365221 | 38.012 | 171 | 85 | 2 | 39 | 209 | 371 | 520 | 3.08e-33 | 125 |
| Msa0865060 | MtrunA17_Chr2g0310091 | 36.464 | 181 | 94 | 1 | 30 | 210 | 360 | 519 | 1.03e-32 | 124 |
| Msa0865060 | MtrunA17_Chr3g0117861 | 37.870 | 169 | 84 | 2 | 39 | 207 | 372 | 519 | 8.57e-32 | 121 |
| Msa0865060 | MtrunA17_Chr4g0059221 | 36.095 | 169 | 87 | 2 | 39 | 207 | 374 | 521 | 1.23e-29 | 115 |
| Msa0865060 | MtrunA17_Chr2g0294411 | 32.402 | 179 | 94 | 3 | 32 | 204 | 354 | 511 | 4.83e-22 | 94.0 |
| Msa0865060 | MtrunA17_Chr2g0300801 | 32.804 | 189 | 94 | 6 | 35 | 215 | 326 | 489 | 1.27e-16 | 78.2 |
| Msa0865060 | MtrunA17_Chr2g0279751 | 28.302 | 159 | 97 | 2 | 29 | 187 | 310 | 451 | 2.33e-14 | 71.6 |
| Msa0865060 | MtrunA17_Chr4g0049641 | 27.848 | 158 | 97 | 2 | 30 | 187 | 338 | 478 | 8.85e-14 | 69.7 |
| Msa0865060 | MtrunA17_Chr4g0074171 | 28.485 | 165 | 93 | 2 | 42 | 205 | 329 | 469 | 8.74e-13 | 66.6 |
| Msa0865060 | MtrunA17_Chr1g0149961 | 26.667 | 165 | 96 | 2 | 42 | 205 | 329 | 469 | 1.76e-11 | 63.2 |
| Msa0865060 | MtrunA17_Chr8g0372381 | 25.592 | 211 | 128 | 5 | 1 | 209 | 244 | 427 | 8.23e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0865060 | AT1G74920.2 | 72.821 | 195 | 31 | 3 | 17 | 210 | 297 | 470 | 6.11e-97 | 291 |
| Msa0865060 | AT1G74920.1 | 72.821 | 195 | 31 | 3 | 17 | 210 | 302 | 475 | 7.91e-97 | 291 |
| Msa0865060 | AT3G48170.1 | 71.271 | 181 | 33 | 1 | 30 | 210 | 314 | 475 | 1.73e-91 | 278 |
| Msa0865060 | AT3G24503.1 | 41.040 | 173 | 81 | 2 | 35 | 207 | 327 | 478 | 3.47e-37 | 135 |
| Msa0865060 | AT1G79440.1 | 37.288 | 177 | 90 | 1 | 34 | 210 | 355 | 510 | 2.39e-32 | 123 |
| Msa0865060 | AT1G23800.1 | 35.294 | 170 | 89 | 2 | 38 | 207 | 363 | 511 | 2.10e-30 | 117 |
| Msa0865060 | AT3G48000.1 | 36.095 | 169 | 87 | 1 | 39 | 207 | 368 | 515 | 3.17e-30 | 117 |
| Msa0865060 | AT3G66658.1 | 31.868 | 182 | 97 | 3 | 32 | 207 | 354 | 514 | 3.67e-22 | 94.7 |
| Msa0865060 | AT3G66658.2 | 31.868 | 182 | 97 | 3 | 32 | 207 | 354 | 514 | 3.76e-22 | 94.7 |
| Msa0865060 | AT2G14170.3 | 26.667 | 195 | 122 | 4 | 30 | 222 | 410 | 585 | 1.31e-15 | 75.5 |
| Msa0865060 | AT1G54100.2 | 31.373 | 204 | 112 | 6 | 17 | 215 | 308 | 488 | 1.90e-15 | 75.1 |
| Msa0865060 | AT1G54100.1 | 31.373 | 204 | 112 | 6 | 17 | 215 | 308 | 488 | 1.90e-15 | 75.1 |
| Msa0865060 | AT2G14170.2 | 29.114 | 158 | 95 | 2 | 30 | 187 | 301 | 441 | 1.47e-14 | 72.4 |
| Msa0865060 | AT2G14170.1 | 29.114 | 158 | 95 | 2 | 30 | 187 | 410 | 550 | 1.87e-14 | 72.4 |
| Msa0865060 | AT4G36250.1 | 27.083 | 192 | 113 | 6 | 21 | 209 | 262 | 429 | 2.85e-11 | 62.8 |
Find 47 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTCTGATGCAGGCATTTA+AGG | 0.134214 | 5_4:+65713137 | Msa0865060:intron |
| ATTTGGAAAGAAGAAGTATT+TGG | 0.232708 | 5_4:+65712815 | Msa0865060:CDS |
| TGACTACTTCCATGCAAATT+TGG | 0.235483 | 5_4:+65712798 | Msa0865060:CDS |
| GGCATTAAACGTAGTGGTTT+TGG | 0.252055 | 5_4:+65713216 | Msa0865060:CDS |
| CATTTAAGGCCGGAATAGTA+TGG | 0.290640 | 5_4:+65713151 | Msa0865060:CDS |
| TTCAATTCATGCACGGAATC+TGG | 0.312219 | 5_4:-65711574 | None:intergenic |
| ATCCCTTGGAAGAAGGTTGC+AGG | 0.381818 | 5_4:+65712126 | Msa0865060:CDS |
| ACAATTGACCCATACTATTC+CGG | 0.405962 | 5_4:-65713160 | None:intergenic |
| CATCAAAATTTCAGATCCCT+TGG | 0.421001 | 5_4:+65712112 | Msa0865060:CDS |
| CAAAACATAATCAATTATCA+TGG | 0.440732 | 5_4:-65712714 | None:intergenic |
| ATTTCAGATCCCTTGGAAGA+AGG | 0.459280 | 5_4:+65712119 | Msa0865060:CDS |
| ATGCTTCACTCAAGCGCCAT+GGG | 0.461661 | 5_4:+65713191 | Msa0865060:CDS |
| GTCCTCTACAGCTATGGCTT+AGG | 0.463601 | 5_4:+65712993 | Msa0865060:intron |
| TTGGAAGAAGGTTGCAGGCT+AGG | 0.466614 | 5_4:+65712131 | Msa0865060:CDS |
| ACCTGTTGTTAGTGAAGGGC+AGG | 0.473564 | 5_4:+65712154 | Msa0865060:CDS |
| GGAATCTGGAATGGCGTCAA+TGG | 0.475294 | 5_4:-65711560 | None:intergenic |
| ACCTGCCCTTCACTAACAAC+AGG | 0.480135 | 5_4:-65712155 | None:intergenic |
| GTCACATCAGTTATGATGGT+TGG | 0.495328 | 5_4:-65712779 | None:intergenic |
| TTCTTCTTTCCAAATTTGCA+TGG | 0.496084 | 5_4:-65712807 | None:intergenic |
| AAGATGTGAGCGTGTAACTA+AGG | 0.508552 | 5_4:+65713043 | Msa0865060:CDS |
| CAATGGCAACATCTAAAGAA+AGG | 0.514049 | 5_4:+65712743 | Msa0865060:CDS |
| CATGCTTCACTCAAGCGCCA+TGG | 0.516509 | 5_4:+65713190 | Msa0865060:CDS |
| GTACATCTCTGATGAACCAT+GGG | 0.525895 | 5_4:+65713801 | Msa0865060:exon |
| AGTAGTCACATCAGTTATGA+TGG | 0.526637 | 5_4:-65712783 | None:intergenic |
| CATACCATTCTCCTAGTTCA+CGG | 0.538382 | 5_4:-65713239 | None:intergenic |
| TAGCCTGCAACCTTCTTCCA+AGG | 0.540093 | 5_4:-65712129 | None:intergenic |
| CTAGGACCTGTTGTTAGTGA+AGG | 0.541728 | 5_4:+65712149 | Msa0865060:CDS |
| TTGGCCGTGAACTAGGAGAA+TGG | 0.556599 | 5_4:+65713235 | Msa0865060:CDS |
| GACTGGTGGGTCTCGACCAG+AGG | 0.561492 | 5_4:+65712640 | Msa0865060:CDS |
| TTCACTCAAGCGCCATGGGG+AGG | 0.564185 | 5_4:+65713195 | Msa0865060:CDS |
| CTGATGCAGGCATTTAAGGC+CGG | 0.567654 | 5_4:+65713141 | Msa0865060:intron |
| GTCTCGAACGCTAAGAGTGA+GGG | 0.574738 | 5_4:+65712605 | Msa0865060:CDS |
| TTCATGCACGGAATCTGGAA+TGG | 0.586797 | 5_4:-65711569 | None:intergenic |
| TAGGACCTGTTGTTAGTGAA+GGG | 0.592104 | 5_4:+65712150 | Msa0865060:CDS |
| TAGATCAATAGCTTCTTCCT+CGG | 0.596377 | 5_4:-65712867 | None:intergenic |
| AGCCTGCAACCTTCTTCCAA+GGG | 0.599460 | 5_4:-65712128 | None:intergenic |
| ATTTAAGGCCGGAATAGTAT+GGG | 0.604605 | 5_4:+65713152 | Msa0865060:CDS |
| GGAGGTTGGTACCATCCCCA+TGG | 0.607677 | 5_4:-65713817 | None:intergenic |
| TGTCTCGAACGCTAAGAGTG+AGG | 0.614021 | 5_4:+65712604 | Msa0865060:CDS |
| AGTACATCTCTGATGAACCA+TGG | 0.616407 | 5_4:+65713800 | Msa0865060:exon |
| ATATTGCTTCAATTCATGCA+CGG | 0.618950 | 5_4:-65711581 | None:intergenic |
| TGGGGAGGCATTAAACGTAG+TGG | 0.638861 | 5_4:+65713210 | Msa0865060:CDS |
| CTACGTTTAATGCCTCCCCA+TGG | 0.639138 | 5_4:-65713207 | None:intergenic |
| CATGGCGCTTGAGTGAAGCA+TGG | 0.643282 | 5_4:-65713189 | None:intergenic |
| TGCTTCACTCAAGCGCCATG+GGG | 0.659834 | 5_4:+65713192 | Msa0865060:CDS |
| TCTCTGATGAACCATGGGGA+TGG | 0.668208 | 5_4:+65713806 | Msa0865060:exon |
| TACATCTCTGATGAACCATG+GGG | 0.778050 | 5_4:+65713802 | Msa0865060:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAAATAAATAAAAAGTT+AGG | - | chr5_4:65713308-65713327 | None:intergenic | 10.0% |
| !!! | TTTTGTTTAATATTTTTAAC+AGG | + | chr5_4:65713745-65713764 | Msa0865060:intron | 10.0% |
| !!! | TTTGTTTAATATTTTTAACA+GGG | + | chr5_4:65713746-65713765 | Msa0865060:intron | 10.0% |
| !! | AGAAAAATAAATAAAAAGTT+AGG | - | chr5_4:65713308-65713327 | None:intergenic | 10.0% |
| !!! | TTTTGTTTAATATTTTTAAC+AGG | + | chr5_4:65713745-65713764 | Msa0865060:intron | 10.0% |
| !!! | TTTGTTTAATATTTTTAACA+GGG | + | chr5_4:65713746-65713765 | Msa0865060:intron | 10.0% |
| !!! | ACTTTTTATTTATTTTTCTC+TGG | + | chr5_4:65713309-65713328 | Msa0865060:intron | 15.0% |
| !!! | TTGTTTAATATTTTTAACAG+GGG | + | chr5_4:65713747-65713766 | Msa0865060:intron | 15.0% |
| !!! | ACTTTTTATTTATTTTTCTC+TGG | + | chr5_4:65713309-65713328 | Msa0865060:intron | 15.0% |
| !!! | TTGTTTAATATTTTTAACAG+GGG | + | chr5_4:65713747-65713766 | Msa0865060:intron | 15.0% |
| !! | AAATAATTCAACATAATGGT+TGG | + | chr5_4:65711657-65711676 | Msa0865060:intron | 20.0% |
| !! | AAAGTAAATATTCACTCAAA+GGG | - | chr5_4:65711688-65711707 | None:intergenic | 20.0% |
| !! | TAAGATACTCTTATTATTTC+AGG | + | chr5_4:65712040-65712059 | Msa0865060:intron | 20.0% |
| !!! | TAGCAACATAATTTTTGAAT+AGG | + | chr5_4:65712069-65712088 | Msa0865060:intron | 20.0% |
| !! | CATATTCAATGAAAATGTAT+TGG | + | chr5_4:65712288-65712307 | Msa0865060:intron | 20.0% |
| !! | TGTATGTATAATTTATGAGA+AGG | + | chr5_4:65712406-65712425 | Msa0865060:intron | 20.0% |
| !! | TATTCTGTATTCACATTATA+TGG | + | chr5_4:65712556-65712575 | Msa0865060:intron | 20.0% |
| !! | CAAAACATAATCAATTATCA+TGG | - | chr5_4:65712717-65712736 | None:intergenic | 20.0% |
| !! | CAAGAAAACAACTAAATAAT+TGG | + | chr5_4:65713086-65713105 | Msa0865060:intron | 20.0% |
| !! | AATAAAAAGTTAGGCATTTA+AGG | - | chr5_4:65713299-65713318 | None:intergenic | 20.0% |
| !! | AAAAGAAACCCATAATTATA+AGG | + | chr5_4:65713363-65713382 | Msa0865060:intron | 20.0% |
| !! | AAATTGGAATTATACATGAT+AGG | + | chr5_4:65713530-65713549 | Msa0865060:intron | 20.0% |
| !! | AATTGGAATTATACATGATA+GGG | + | chr5_4:65713531-65713550 | Msa0865060:intron | 20.0% |
| !! | AAATAATTCAACATAATGGT+TGG | + | chr5_4:65711657-65711676 | Msa0865060:intron | 20.0% |
| !! | AAAGTAAATATTCACTCAAA+GGG | - | chr5_4:65711688-65711707 | None:intergenic | 20.0% |
| !! | TAAGATACTCTTATTATTTC+AGG | + | chr5_4:65712040-65712059 | Msa0865060:intron | 20.0% |
| !!! | TAGCAACATAATTTTTGAAT+AGG | + | chr5_4:65712069-65712088 | Msa0865060:intron | 20.0% |
| !! | CATATTCAATGAAAATGTAT+TGG | + | chr5_4:65712288-65712307 | Msa0865060:intron | 20.0% |
| !! | TGTATGTATAATTTATGAGA+AGG | + | chr5_4:65712406-65712425 | Msa0865060:intron | 20.0% |
| !! | TATTCTGTATTCACATTATA+TGG | + | chr5_4:65712556-65712575 | Msa0865060:intron | 20.0% |
| !! | CAAAACATAATCAATTATCA+TGG | - | chr5_4:65712717-65712736 | None:intergenic | 20.0% |
| !! | CAAGAAAACAACTAAATAAT+TGG | + | chr5_4:65713086-65713105 | Msa0865060:intron | 20.0% |
| !! | AATAAAAAGTTAGGCATTTA+AGG | - | chr5_4:65713299-65713318 | None:intergenic | 20.0% |
| !! | AAAAGAAACCCATAATTATA+AGG | + | chr5_4:65713363-65713382 | Msa0865060:intron | 20.0% |
| !! | AAATTGGAATTATACATGAT+AGG | + | chr5_4:65713530-65713549 | Msa0865060:intron | 20.0% |
| !! | AATTGGAATTATACATGATA+GGG | + | chr5_4:65713531-65713550 | Msa0865060:intron | 20.0% |
| ! | GCTCAAATAATTCAACATAA+TGG | + | chr5_4:65711653-65711672 | Msa0865060:intron | 25.0% |
| ! | CAAAGTAAATATTCACTCAA+AGG | - | chr5_4:65711689-65711708 | None:intergenic | 25.0% |
| !!! | ATGGTTCTACATTTTGAATA+TGG | + | chr5_4:65711780-65711799 | Msa0865060:intron | 25.0% |
| ! | TACTTACATGTACAATAAGA+CGG | - | chr5_4:65711827-65711846 | None:intergenic | 25.0% |
| ! | GACAAAAGAAAAAATGCAAA+TGG | - | chr5_4:65711916-65711935 | None:intergenic | 25.0% |
| !! | TTTTGAATAGGATGATGAAA+TGG | + | chr5_4:65712081-65712100 | Msa0865060:intron | 25.0% |
| ! | TTCTGAACTTTGTAAAGTAA+AGG | + | chr5_4:65712231-65712250 | Msa0865060:intron | 25.0% |
| ! | ATAATTTATGAGAAGGAAGA+AGG | + | chr5_4:65712413-65712432 | Msa0865060:intron | 25.0% |
| ! | AGAAAGAAAACTACATTATG+TGG | - | chr5_4:65712465-65712484 | None:intergenic | 25.0% |
| !! | ACATAATGTAGTTTTCTTTC+TGG | + | chr5_4:65712464-65712483 | Msa0865060:intron | 25.0% |
| ! | TGATTCTAAACATATTTGTC+TGG | + | chr5_4:65712510-65712529 | Msa0865060:intron | 25.0% |
| !! | ATTATGTTTTGCAAATGCAA+TGG | + | chr5_4:65712726-65712745 | Msa0865060:CDS | 25.0% |
| !!! | ATTTGGAAAGAAGAAGTATT+TGG | + | chr5_4:65712815-65712834 | Msa0865060:CDS | 25.0% |
| ! | GGTATCTAAGTTATATACTT+TGG | + | chr5_4:65712971-65712990 | Msa0865060:intron | 25.0% |
| ! | AGACTTCACCTTATAATTAT+GGG | - | chr5_4:65713374-65713393 | None:intergenic | 25.0% |
| ! | TAGACTTCACCTTATAATTA+TGG | - | chr5_4:65713375-65713394 | None:intergenic | 25.0% |
| ! | ATTAAACAAAATCAGACTCA+AGG | - | chr5_4:65713736-65713755 | None:intergenic | 25.0% |
| ! | GCTCAAATAATTCAACATAA+TGG | + | chr5_4:65711653-65711672 | Msa0865060:intron | 25.0% |
| ! | CAAAGTAAATATTCACTCAA+AGG | - | chr5_4:65711689-65711708 | None:intergenic | 25.0% |
| !!! | ATGGTTCTACATTTTGAATA+TGG | + | chr5_4:65711780-65711799 | Msa0865060:intron | 25.0% |
| ! | TACTTACATGTACAATAAGA+CGG | - | chr5_4:65711827-65711846 | None:intergenic | 25.0% |
| ! | GACAAAAGAAAAAATGCAAA+TGG | - | chr5_4:65711916-65711935 | None:intergenic | 25.0% |
| !! | TTTTGAATAGGATGATGAAA+TGG | + | chr5_4:65712081-65712100 | Msa0865060:intron | 25.0% |
| ! | TTCTGAACTTTGTAAAGTAA+AGG | + | chr5_4:65712231-65712250 | Msa0865060:intron | 25.0% |
| ! | ATAATTTATGAGAAGGAAGA+AGG | + | chr5_4:65712413-65712432 | Msa0865060:intron | 25.0% |
| ! | AGAAAGAAAACTACATTATG+TGG | - | chr5_4:65712465-65712484 | None:intergenic | 25.0% |
| !! | ACATAATGTAGTTTTCTTTC+TGG | + | chr5_4:65712464-65712483 | Msa0865060:intron | 25.0% |
| ! | TGATTCTAAACATATTTGTC+TGG | + | chr5_4:65712510-65712529 | Msa0865060:intron | 25.0% |
| !! | ATTATGTTTTGCAAATGCAA+TGG | + | chr5_4:65712726-65712745 | Msa0865060:CDS | 25.0% |
| !!! | ATTTGGAAAGAAGAAGTATT+TGG | + | chr5_4:65712815-65712834 | Msa0865060:CDS | 25.0% |
| ! | GGTATCTAAGTTATATACTT+TGG | + | chr5_4:65712971-65712990 | Msa0865060:intron | 25.0% |
| ! | AGACTTCACCTTATAATTAT+GGG | - | chr5_4:65713374-65713393 | None:intergenic | 25.0% |
| ! | TAGACTTCACCTTATAATTA+TGG | - | chr5_4:65713375-65713394 | None:intergenic | 25.0% |
| ! | ATTAAACAAAATCAGACTCA+AGG | - | chr5_4:65713736-65713755 | None:intergenic | 25.0% |
| ATATTGCTTCAATTCATGCA+CGG | - | chr5_4:65711584-65711603 | None:intergenic | 30.0% | |
| ACTTACATGTACAATAAGAC+GGG | - | chr5_4:65711826-65711845 | None:intergenic | 30.0% | |
| ! | TTTTCTTTTGTCTGCGTATA+TGG | + | chr5_4:65711924-65711943 | Msa0865060:intron | 30.0% |
| ! | TTTCTTTTGTCTGCGTATAT+GGG | + | chr5_4:65711925-65711944 | Msa0865060:intron | 30.0% |
| TAGAACTTTGTCAGACAAAT+TGG | + | chr5_4:65711974-65711993 | Msa0865060:intron | 30.0% | |
| GAACTTTGTAAAGTAAAGGA+CGG | + | chr5_4:65712235-65712254 | Msa0865060:intron | 30.0% | |
| TTCTTCTTTCCAAATTTGCA+TGG | - | chr5_4:65712810-65712829 | None:intergenic | 30.0% | |
| ! | TTCATCTGTATACTCTTTTC+CGG | + | chr5_4:65712935-65712954 | Msa0865060:intron | 30.0% |
| !! | TTATTTTTCTCTGGATGAAG+AGG | + | chr5_4:65713318-65713337 | Msa0865060:intron | 30.0% |
| ACAGTCAATAAAGCTATGAA+CGG | + | chr5_4:65713476-65713495 | Msa0865060:intron | 30.0% | |
| ! | AATTCCAATTTTACCATGCA+AGG | - | chr5_4:65713521-65713540 | None:intergenic | 30.0% |
| TCTGACATTAATACAGGTTT+AGG | - | chr5_4:65713668-65713687 | None:intergenic | 30.0% | |
| !! | GATACATATCATAGTTTTGC+AGG | - | chr5_4:65713841-65713860 | None:intergenic | 30.0% |
| ATATTGCTTCAATTCATGCA+CGG | - | chr5_4:65711584-65711603 | None:intergenic | 30.0% | |
| ACTTACATGTACAATAAGAC+GGG | - | chr5_4:65711826-65711845 | None:intergenic | 30.0% | |
| ! | TTTTCTTTTGTCTGCGTATA+TGG | + | chr5_4:65711924-65711943 | Msa0865060:intron | 30.0% |
| ! | TTTCTTTTGTCTGCGTATAT+GGG | + | chr5_4:65711925-65711944 | Msa0865060:intron | 30.0% |
| TAGAACTTTGTCAGACAAAT+TGG | + | chr5_4:65711974-65711993 | Msa0865060:intron | 30.0% | |
| GAACTTTGTAAAGTAAAGGA+CGG | + | chr5_4:65712235-65712254 | Msa0865060:intron | 30.0% | |
| TTCTTCTTTCCAAATTTGCA+TGG | - | chr5_4:65712810-65712829 | None:intergenic | 30.0% | |
| ! | TTCATCTGTATACTCTTTTC+CGG | + | chr5_4:65712935-65712954 | Msa0865060:intron | 30.0% |
| !! | TTATTTTTCTCTGGATGAAG+AGG | + | chr5_4:65713318-65713337 | Msa0865060:intron | 30.0% |
| ACAGTCAATAAAGCTATGAA+CGG | + | chr5_4:65713476-65713495 | Msa0865060:intron | 30.0% | |
| ! | AATTCCAATTTTACCATGCA+AGG | - | chr5_4:65713521-65713540 | None:intergenic | 30.0% |
| TCTGACATTAATACAGGTTT+AGG | - | chr5_4:65713668-65713687 | None:intergenic | 30.0% | |
| !! | GATACATATCATAGTTTTGC+AGG | - | chr5_4:65713841-65713860 | None:intergenic | 30.0% |
| TCATGTATTCAGCAGAGTAA+GGG | + | chr5_4:65711617-65711636 | Msa0865060:intron | 35.0% | |
| TGAGCTAGCACAAAAGTTTA+CGG | - | chr5_4:65711872-65711891 | None:intergenic | 35.0% | |
| ! | TTGTCAGACAAATTGGTAGT+TGG | + | chr5_4:65711981-65712000 | Msa0865060:intron | 35.0% |
| ! | TGTCAGACAAATTGGTAGTT+GGG | + | chr5_4:65711982-65712001 | Msa0865060:intron | 35.0% |
| !! | ATTGGTAGTTGGGATTTTGT+CGG | + | chr5_4:65711992-65712011 | Msa0865060:intron | 35.0% |
| CATCAAAATTTCAGATCCCT+TGG | + | chr5_4:65712112-65712131 | Msa0865060:CDS | 35.0% | |
| ! | ATGTCAATTTGCTTGTACCA+TGG | + | chr5_4:65712334-65712353 | Msa0865060:intron | 35.0% |
| !! | ATGTAGTTTTCTTTCTGGTC+AGG | + | chr5_4:65712469-65712488 | Msa0865060:intron | 35.0% |
| ! | AGAAAGCATAATCATACCTC+TGG | - | chr5_4:65712659-65712678 | None:intergenic | 35.0% |
| CAATGGCAACATCTAAAGAA+AGG | + | chr5_4:65712743-65712762 | Msa0865060:CDS | 35.0% | |
| AGTAGTCACATCAGTTATGA+TGG | - | chr5_4:65712786-65712805 | None:intergenic | 35.0% | |
| TGACTACTTCCATGCAAATT+TGG | + | chr5_4:65712798-65712817 | Msa0865060:CDS | 35.0% | |
| ! | AACGTTTTTACACACAGAAC+AGG | - | chr5_4:65712842-65712861 | None:intergenic | 35.0% |
| TAGATCAATAGCTTCTTCCT+CGG | - | chr5_4:65712870-65712889 | None:intergenic | 35.0% | |
| ACTAAGGTGAGACTGATTAT+AGG | + | chr5_4:65713059-65713078 | Msa0865060:intron | 35.0% | |
| ! | ATTTAAGGCCGGAATAGTAT+GGG | + | chr5_4:65713152-65713171 | Msa0865060:CDS | 35.0% |
| ACAATTGACCCATACTATTC+CGG | - | chr5_4:65713163-65713182 | None:intergenic | 35.0% | |
| ATAAAGCTATGAACGGATCA+TGG | + | chr5_4:65713483-65713502 | Msa0865060:intron | 35.0% | |
| CATTCCTTGCATGGTAAAAT+TGG | + | chr5_4:65713514-65713533 | Msa0865060:intron | 35.0% | |
| ATGTTTCCTTGGTCTGAATT+TGG | + | chr5_4:65713578-65713597 | Msa0865060:intron | 35.0% | |
| TTTATGCCAAATTCAGACCA+AGG | - | chr5_4:65713587-65713606 | None:intergenic | 35.0% | |
| TTGGTCTGAATTTGGCATAA+AGG | + | chr5_4:65713586-65713605 | Msa0865060:intron | 35.0% | |
| TGGTCTGAATTTGGCATAAA+GGG | + | chr5_4:65713587-65713606 | Msa0865060:intron | 35.0% | |
| ATTTGGCATAAAGGGATAGT+TGG | + | chr5_4:65713595-65713614 | Msa0865060:intron | 35.0% | |
| CATAAAGGGATAGTTGGATT+GGG | + | chr5_4:65713601-65713620 | Msa0865060:intron | 35.0% | |
| ACCTGTATTAATGTCAGATC+TGG | + | chr5_4:65713670-65713689 | Msa0865060:intron | 35.0% | |
| !! | ACATATCATAGTTTTGCAGG+AGG | - | chr5_4:65713838-65713857 | None:intergenic | 35.0% |
| TCATGTATTCAGCAGAGTAA+GGG | + | chr5_4:65711617-65711636 | Msa0865060:intron | 35.0% | |
| TGAGCTAGCACAAAAGTTTA+CGG | - | chr5_4:65711872-65711891 | None:intergenic | 35.0% | |
| ! | TTGTCAGACAAATTGGTAGT+TGG | + | chr5_4:65711981-65712000 | Msa0865060:intron | 35.0% |
| ! | TGTCAGACAAATTGGTAGTT+GGG | + | chr5_4:65711982-65712001 | Msa0865060:intron | 35.0% |
| !! | ATTGGTAGTTGGGATTTTGT+CGG | + | chr5_4:65711992-65712011 | Msa0865060:intron | 35.0% |
| CATCAAAATTTCAGATCCCT+TGG | + | chr5_4:65712112-65712131 | Msa0865060:CDS | 35.0% | |
| ! | ATGTCAATTTGCTTGTACCA+TGG | + | chr5_4:65712334-65712353 | Msa0865060:intron | 35.0% |
| !! | ATGTAGTTTTCTTTCTGGTC+AGG | + | chr5_4:65712469-65712488 | Msa0865060:intron | 35.0% |
| ! | AGAAAGCATAATCATACCTC+TGG | - | chr5_4:65712659-65712678 | None:intergenic | 35.0% |
| CAATGGCAACATCTAAAGAA+AGG | + | chr5_4:65712743-65712762 | Msa0865060:CDS | 35.0% | |
| AGTAGTCACATCAGTTATGA+TGG | - | chr5_4:65712786-65712805 | None:intergenic | 35.0% | |
| TGACTACTTCCATGCAAATT+TGG | + | chr5_4:65712798-65712817 | Msa0865060:CDS | 35.0% | |
| ! | AACGTTTTTACACACAGAAC+AGG | - | chr5_4:65712842-65712861 | None:intergenic | 35.0% |
| TAGATCAATAGCTTCTTCCT+CGG | - | chr5_4:65712870-65712889 | None:intergenic | 35.0% | |
| ACTAAGGTGAGACTGATTAT+AGG | + | chr5_4:65713059-65713078 | Msa0865060:intron | 35.0% | |
| ! | ATTTAAGGCCGGAATAGTAT+GGG | + | chr5_4:65713152-65713171 | Msa0865060:CDS | 35.0% |
| ACAATTGACCCATACTATTC+CGG | - | chr5_4:65713163-65713182 | None:intergenic | 35.0% | |
| ATAAAGCTATGAACGGATCA+TGG | + | chr5_4:65713483-65713502 | Msa0865060:intron | 35.0% | |
| CATTCCTTGCATGGTAAAAT+TGG | + | chr5_4:65713514-65713533 | Msa0865060:intron | 35.0% | |
| ATGTTTCCTTGGTCTGAATT+TGG | + | chr5_4:65713578-65713597 | Msa0865060:intron | 35.0% | |
| TTTATGCCAAATTCAGACCA+AGG | - | chr5_4:65713587-65713606 | None:intergenic | 35.0% | |
| TTGGTCTGAATTTGGCATAA+AGG | + | chr5_4:65713586-65713605 | Msa0865060:intron | 35.0% | |
| TGGTCTGAATTTGGCATAAA+GGG | + | chr5_4:65713587-65713606 | Msa0865060:intron | 35.0% | |
| ATTTGGCATAAAGGGATAGT+TGG | + | chr5_4:65713595-65713614 | Msa0865060:intron | 35.0% | |
| CATAAAGGGATAGTTGGATT+GGG | + | chr5_4:65713601-65713620 | Msa0865060:intron | 35.0% | |
| ACCTGTATTAATGTCAGATC+TGG | + | chr5_4:65713670-65713689 | Msa0865060:intron | 35.0% | |
| !! | ACATATCATAGTTTTGCAGG+AGG | - | chr5_4:65713838-65713857 | None:intergenic | 35.0% |
| TTCAATTCATGCACGGAATC+TGG | - | chr5_4:65711577-65711596 | None:intergenic | 40.0% | |
| CTCATGTATTCAGCAGAGTA+AGG | + | chr5_4:65711616-65711635 | Msa0865060:intron | 40.0% | |
| GTCAGAGTTGCTTGAAACTA+TGG | + | chr5_4:65711761-65711780 | Msa0865060:intron | 40.0% | |
| CAAAAGTTTACGGAAGGAGT+GGG | - | chr5_4:65711862-65711881 | None:intergenic | 40.0% | |
| ACAAAAGTTTACGGAAGGAG+TGG | - | chr5_4:65711863-65711882 | None:intergenic | 40.0% | |
| CTAGCACAAAAGTTTACGGA+AGG | - | chr5_4:65711868-65711887 | None:intergenic | 40.0% | |
| ATTTCAGATCCCTTGGAAGA+AGG | + | chr5_4:65712119-65712138 | Msa0865060:CDS | 40.0% | |
| TAGGACCTGTTGTTAGTGAA+GGG | + | chr5_4:65712150-65712169 | Msa0865060:CDS | 40.0% | |
| ! | AATTTGCTTGTACCATGGAC+TGG | + | chr5_4:65712339-65712358 | Msa0865060:intron | 40.0% |
| GTCACATCAGTTATGATGGT+TGG | - | chr5_4:65712782-65712801 | None:intergenic | 40.0% | |
| TGTAAAAACGTTTAGCACCG+AGG | + | chr5_4:65712850-65712869 | Msa0865060:CDS | 40.0% | |
| ! | TACTCTTTTCCGGTCATTTG+TGG | + | chr5_4:65712945-65712964 | Msa0865060:intron | 40.0% |
| ! | TTTTCCGGTCATTTGTGGAA+TGG | + | chr5_4:65712950-65712969 | Msa0865060:intron | 40.0% |
| GATACCATTCCACAAATGAC+CGG | - | chr5_4:65712957-65712976 | None:intergenic | 40.0% | |
| AAGATGTGAGCGTGTAACTA+AGG | + | chr5_4:65713043-65713062 | Msa0865060:CDS | 40.0% | |
| AGTTTATCTTGCTCTGATGC+AGG | + | chr5_4:65713128-65713147 | Msa0865060:intron | 40.0% | |
| ! | CATTTAAGGCCGGAATAGTA+TGG | + | chr5_4:65713151-65713170 | Msa0865060:CDS | 40.0% |
| ! | GGCATTAAACGTAGTGGTTT+TGG | + | chr5_4:65713216-65713235 | Msa0865060:CDS | 40.0% |
| CATACCATTCTCCTAGTTCA+CGG | - | chr5_4:65713242-65713261 | None:intergenic | 40.0% | |
| TAAGGTGAAGTCTAAGTCTG+TGG | + | chr5_4:65713381-65713400 | Msa0865060:intron | 40.0% | |
| GACACATTTGCATGTTTCCT+TGG | + | chr5_4:65713567-65713586 | Msa0865060:intron | 40.0% | |
| GCATAAAGGGATAGTTGGAT+TGG | + | chr5_4:65713600-65713619 | Msa0865060:intron | 40.0% | |
| GCCAGATCTGACATTAATAC+AGG | - | chr5_4:65713674-65713693 | None:intergenic | 40.0% | |
| TATTAATGTCAGATCTGGCG+TGG | + | chr5_4:65713675-65713694 | Msa0865060:intron | 40.0% | |
| ATTAATGTCAGATCTGGCGT+GGG | + | chr5_4:65713676-65713695 | Msa0865060:intron | 40.0% | |
| GACTCAAGGTCAAATAAGAC+AGG | - | chr5_4:65713722-65713741 | None:intergenic | 40.0% | |
| AGTACATCTCTGATGAACCA+TGG | + | chr5_4:65713800-65713819 | Msa0865060:exon | 40.0% | |
| GTACATCTCTGATGAACCAT+GGG | + | chr5_4:65713801-65713820 | Msa0865060:exon | 40.0% | |
| TACATCTCTGATGAACCATG+GGG | + | chr5_4:65713802-65713821 | Msa0865060:exon | 40.0% | |
| !! | ATCATAGTTTTGCAGGAGGT+TGG | - | chr5_4:65713834-65713853 | None:intergenic | 40.0% |
| TTCAATTCATGCACGGAATC+TGG | - | chr5_4:65711577-65711596 | None:intergenic | 40.0% | |
| CTCATGTATTCAGCAGAGTA+AGG | + | chr5_4:65711616-65711635 | Msa0865060:intron | 40.0% | |
| GTCAGAGTTGCTTGAAACTA+TGG | + | chr5_4:65711761-65711780 | Msa0865060:intron | 40.0% | |
| CAAAAGTTTACGGAAGGAGT+GGG | - | chr5_4:65711862-65711881 | None:intergenic | 40.0% | |
| ACAAAAGTTTACGGAAGGAG+TGG | - | chr5_4:65711863-65711882 | None:intergenic | 40.0% | |
| CTAGCACAAAAGTTTACGGA+AGG | - | chr5_4:65711868-65711887 | None:intergenic | 40.0% | |
| ATTTCAGATCCCTTGGAAGA+AGG | + | chr5_4:65712119-65712138 | Msa0865060:CDS | 40.0% | |
| TAGGACCTGTTGTTAGTGAA+GGG | + | chr5_4:65712150-65712169 | Msa0865060:CDS | 40.0% | |
| ! | AATTTGCTTGTACCATGGAC+TGG | + | chr5_4:65712339-65712358 | Msa0865060:intron | 40.0% |
| GTCACATCAGTTATGATGGT+TGG | - | chr5_4:65712782-65712801 | None:intergenic | 40.0% | |
| TGTAAAAACGTTTAGCACCG+AGG | + | chr5_4:65712850-65712869 | Msa0865060:CDS | 40.0% | |
| ! | TACTCTTTTCCGGTCATTTG+TGG | + | chr5_4:65712945-65712964 | Msa0865060:intron | 40.0% |
| ! | TTTTCCGGTCATTTGTGGAA+TGG | + | chr5_4:65712950-65712969 | Msa0865060:intron | 40.0% |
| GATACCATTCCACAAATGAC+CGG | - | chr5_4:65712957-65712976 | None:intergenic | 40.0% | |
| AAGATGTGAGCGTGTAACTA+AGG | + | chr5_4:65713043-65713062 | Msa0865060:CDS | 40.0% | |
| AGTTTATCTTGCTCTGATGC+AGG | + | chr5_4:65713128-65713147 | Msa0865060:intron | 40.0% | |
| ! | CATTTAAGGCCGGAATAGTA+TGG | + | chr5_4:65713151-65713170 | Msa0865060:CDS | 40.0% |
| ! | GGCATTAAACGTAGTGGTTT+TGG | + | chr5_4:65713216-65713235 | Msa0865060:CDS | 40.0% |
| CATACCATTCTCCTAGTTCA+CGG | - | chr5_4:65713242-65713261 | None:intergenic | 40.0% | |
| TAAGGTGAAGTCTAAGTCTG+TGG | + | chr5_4:65713381-65713400 | Msa0865060:intron | 40.0% | |
| GACACATTTGCATGTTTCCT+TGG | + | chr5_4:65713567-65713586 | Msa0865060:intron | 40.0% | |
| GCATAAAGGGATAGTTGGAT+TGG | + | chr5_4:65713600-65713619 | Msa0865060:intron | 40.0% | |
| GCCAGATCTGACATTAATAC+AGG | - | chr5_4:65713674-65713693 | None:intergenic | 40.0% | |
| TATTAATGTCAGATCTGGCG+TGG | + | chr5_4:65713675-65713694 | Msa0865060:intron | 40.0% | |
| ATTAATGTCAGATCTGGCGT+GGG | + | chr5_4:65713676-65713695 | Msa0865060:intron | 40.0% | |
| GACTCAAGGTCAAATAAGAC+AGG | - | chr5_4:65713722-65713741 | None:intergenic | 40.0% | |
| AGTACATCTCTGATGAACCA+TGG | + | chr5_4:65713800-65713819 | Msa0865060:exon | 40.0% | |
| GTACATCTCTGATGAACCAT+GGG | + | chr5_4:65713801-65713820 | Msa0865060:exon | 40.0% | |
| TACATCTCTGATGAACCATG+GGG | + | chr5_4:65713802-65713821 | Msa0865060:exon | 40.0% | |
| !! | ATCATAGTTTTGCAGGAGGT+TGG | - | chr5_4:65713834-65713853 | None:intergenic | 40.0% |
| TTCATGCACGGAATCTGGAA+TGG | - | chr5_4:65711572-65711591 | None:intergenic | 45.0% | |
| CTAGGACCTGTTGTTAGTGA+AGG | + | chr5_4:65712149-65712168 | Msa0865060:CDS | 45.0% | |
| ! | GGAAGCTTTATACCAGTCCA+TGG | - | chr5_4:65712354-65712373 | None:intergenic | 45.0% |
| !! | AGCTTCCTGAGAAGCACTAT+TGG | + | chr5_4:65712367-65712386 | Msa0865060:intron | 45.0% |
| !!! | GTGCGACAATTTTGACTGGT+GGG | + | chr5_4:65712627-65712646 | Msa0865060:CDS | 45.0% |
| CTGTGCAAGTGTGTTCAGTT+AGG | + | chr5_4:65712677-65712696 | Msa0865060:intron | 45.0% | |
| ACTTTGGTCCTCTACAGCTA+TGG | + | chr5_4:65712987-65713006 | Msa0865060:intron | 45.0% | |
| TGCTCTGATGCAGGCATTTA+AGG | + | chr5_4:65713137-65713156 | Msa0865060:intron | 45.0% | |
| TGATCACTACACTGTCAGCA+GGG | - | chr5_4:65713427-65713446 | None:intergenic | 45.0% | |
| ATGATCACTACACTGTCAGC+AGG | - | chr5_4:65713428-65713447 | None:intergenic | 45.0% | |
| TTCATGCACGGAATCTGGAA+TGG | - | chr5_4:65711572-65711591 | None:intergenic | 45.0% | |
| CTAGGACCTGTTGTTAGTGA+AGG | + | chr5_4:65712149-65712168 | Msa0865060:CDS | 45.0% | |
| ! | GGAAGCTTTATACCAGTCCA+TGG | - | chr5_4:65712354-65712373 | None:intergenic | 45.0% |
| !! | AGCTTCCTGAGAAGCACTAT+TGG | + | chr5_4:65712367-65712386 | Msa0865060:intron | 45.0% |
| !!! | GTGCGACAATTTTGACTGGT+GGG | + | chr5_4:65712627-65712646 | Msa0865060:CDS | 45.0% |
| CTGTGCAAGTGTGTTCAGTT+AGG | + | chr5_4:65712677-65712696 | Msa0865060:intron | 45.0% | |
| ACTTTGGTCCTCTACAGCTA+TGG | + | chr5_4:65712987-65713006 | Msa0865060:intron | 45.0% | |
| TGCTCTGATGCAGGCATTTA+AGG | + | chr5_4:65713137-65713156 | Msa0865060:intron | 45.0% | |
| TGATCACTACACTGTCAGCA+GGG | - | chr5_4:65713427-65713446 | None:intergenic | 45.0% | |
| ATGATCACTACACTGTCAGC+AGG | - | chr5_4:65713428-65713447 | None:intergenic | 45.0% | |
| ! | GGAATCTGGAATGGCGTCAA+TGG | - | chr5_4:65711563-65711582 | None:intergenic | 50.0% |
| ATCCCTTGGAAGAAGGTTGC+AGG | + | chr5_4:65712126-65712145 | Msa0865060:CDS | 50.0% | |
| AGCCTGCAACCTTCTTCCAA+GGG | - | chr5_4:65712131-65712150 | None:intergenic | 50.0% | |
| TAGCCTGCAACCTTCTTCCA+AGG | - | chr5_4:65712132-65712151 | None:intergenic | 50.0% | |
| TTGGAAGAAGGTTGCAGGCT+AGG | + | chr5_4:65712131-65712150 | Msa0865060:CDS | 50.0% | |
| ACCTGTTGTTAGTGAAGGGC+AGG | + | chr5_4:65712154-65712173 | Msa0865060:CDS | 50.0% | |
| ACCTGCCCTTCACTAACAAC+AGG | - | chr5_4:65712158-65712177 | None:intergenic | 50.0% | |
| !! | TCCTGAGAAGCACTATTGGC+TGG | + | chr5_4:65712371-65712390 | Msa0865060:intron | 50.0% |
| ACCAGCCAATAGTGCTTCTC+AGG | - | chr5_4:65712375-65712394 | None:intergenic | 50.0% | |
| !! | GAGAAGCACTATTGGCTGGT+TGG | + | chr5_4:65712375-65712394 | Msa0865060:intron | 50.0% |
| TGTCTCGAACGCTAAGAGTG+AGG | + | chr5_4:65712604-65712623 | Msa0865060:CDS | 50.0% | |
| GTCTCGAACGCTAAGAGTGA+GGG | + | chr5_4:65712605-65712624 | Msa0865060:CDS | 50.0% | |
| !! | GAGGGTGCGACAATTTTGAC+TGG | + | chr5_4:65712623-65712642 | Msa0865060:CDS | 50.0% |
| !!! | GGTGCGACAATTTTGACTGG+TGG | + | chr5_4:65712626-65712645 | Msa0865060:CDS | 50.0% |
| GTCCTCTACAGCTATGGCTT+AGG | + | chr5_4:65712993-65713012 | Msa0865060:intron | 50.0% | |
| CACCTAAGCCATAGCTGTAG+AGG | - | chr5_4:65712998-65713017 | None:intergenic | 50.0% | |
| ! | CTGATGCAGGCATTTAAGGC+CGG | + | chr5_4:65713141-65713160 | Msa0865060:intron | 50.0% |
| ATGCTTCACTCAAGCGCCAT+GGG | + | chr5_4:65713191-65713210 | Msa0865060:CDS | 50.0% | |
| CTACGTTTAATGCCTCCCCA+TGG | - | chr5_4:65713210-65713229 | None:intergenic | 50.0% | |
| !! | TGGGGAGGCATTAAACGTAG+TGG | + | chr5_4:65713210-65713229 | Msa0865060:CDS | 50.0% |
| !!! | AGTGGTTTTGGCCGTGAACT+AGG | + | chr5_4:65713228-65713247 | Msa0865060:CDS | 50.0% |
| TTGGCCGTGAACTAGGAGAA+TGG | + | chr5_4:65713235-65713254 | Msa0865060:CDS | 50.0% | |
| CTATGAACGGATCATGGCAC+TGG | + | chr5_4:65713489-65713508 | Msa0865060:intron | 50.0% | |
| TCTCTGATGAACCATGGGGA+TGG | + | chr5_4:65713806-65713825 | Msa0865060:exon | 50.0% | |
| ! | GGAATCTGGAATGGCGTCAA+TGG | - | chr5_4:65711563-65711582 | None:intergenic | 50.0% |
| ATCCCTTGGAAGAAGGTTGC+AGG | + | chr5_4:65712126-65712145 | Msa0865060:CDS | 50.0% | |
| AGCCTGCAACCTTCTTCCAA+GGG | - | chr5_4:65712131-65712150 | None:intergenic | 50.0% | |
| TAGCCTGCAACCTTCTTCCA+AGG | - | chr5_4:65712132-65712151 | None:intergenic | 50.0% | |
| TTGGAAGAAGGTTGCAGGCT+AGG | + | chr5_4:65712131-65712150 | Msa0865060:CDS | 50.0% | |
| ACCTGTTGTTAGTGAAGGGC+AGG | + | chr5_4:65712154-65712173 | Msa0865060:CDS | 50.0% | |
| ACCTGCCCTTCACTAACAAC+AGG | - | chr5_4:65712158-65712177 | None:intergenic | 50.0% | |
| !! | TCCTGAGAAGCACTATTGGC+TGG | + | chr5_4:65712371-65712390 | Msa0865060:intron | 50.0% |
| ACCAGCCAATAGTGCTTCTC+AGG | - | chr5_4:65712375-65712394 | None:intergenic | 50.0% | |
| !! | GAGAAGCACTATTGGCTGGT+TGG | + | chr5_4:65712375-65712394 | Msa0865060:intron | 50.0% |
| TGTCTCGAACGCTAAGAGTG+AGG | + | chr5_4:65712604-65712623 | Msa0865060:CDS | 50.0% | |
| GTCTCGAACGCTAAGAGTGA+GGG | + | chr5_4:65712605-65712624 | Msa0865060:CDS | 50.0% | |
| !! | GAGGGTGCGACAATTTTGAC+TGG | + | chr5_4:65712623-65712642 | Msa0865060:CDS | 50.0% |
| !!! | GGTGCGACAATTTTGACTGG+TGG | + | chr5_4:65712626-65712645 | Msa0865060:CDS | 50.0% |
| GTCCTCTACAGCTATGGCTT+AGG | + | chr5_4:65712993-65713012 | Msa0865060:intron | 50.0% | |
| CACCTAAGCCATAGCTGTAG+AGG | - | chr5_4:65712998-65713017 | None:intergenic | 50.0% | |
| ! | CTGATGCAGGCATTTAAGGC+CGG | + | chr5_4:65713141-65713160 | Msa0865060:intron | 50.0% |
| ATGCTTCACTCAAGCGCCAT+GGG | + | chr5_4:65713191-65713210 | Msa0865060:CDS | 50.0% | |
| CTACGTTTAATGCCTCCCCA+TGG | - | chr5_4:65713210-65713229 | None:intergenic | 50.0% | |
| !! | TGGGGAGGCATTAAACGTAG+TGG | + | chr5_4:65713210-65713229 | Msa0865060:CDS | 50.0% |
| !!! | AGTGGTTTTGGCCGTGAACT+AGG | + | chr5_4:65713228-65713247 | Msa0865060:CDS | 50.0% |
| TTGGCCGTGAACTAGGAGAA+TGG | + | chr5_4:65713235-65713254 | Msa0865060:CDS | 50.0% | |
| CTATGAACGGATCATGGCAC+TGG | + | chr5_4:65713489-65713508 | Msa0865060:intron | 50.0% | |
| TCTCTGATGAACCATGGGGA+TGG | + | chr5_4:65713806-65713825 | Msa0865060:exon | 50.0% | |
| CATGGCGCTTGAGTGAAGCA+TGG | - | chr5_4:65713192-65713211 | None:intergenic | 55.0% | |
| CATGCTTCACTCAAGCGCCA+TGG | + | chr5_4:65713190-65713209 | Msa0865060:CDS | 55.0% | |
| TGCTTCACTCAAGCGCCATG+GGG | + | chr5_4:65713192-65713211 | Msa0865060:CDS | 55.0% | |
| ! | GCACTGGTGCATTCCTTGCA+TGG | + | chr5_4:65713505-65713524 | Msa0865060:intron | 55.0% |
| CATGGCGCTTGAGTGAAGCA+TGG | - | chr5_4:65713192-65713211 | None:intergenic | 55.0% | |
| CATGCTTCACTCAAGCGCCA+TGG | + | chr5_4:65713190-65713209 | Msa0865060:CDS | 55.0% | |
| TGCTTCACTCAAGCGCCATG+GGG | + | chr5_4:65713192-65713211 | Msa0865060:CDS | 55.0% | |
| ! | GCACTGGTGCATTCCTTGCA+TGG | + | chr5_4:65713505-65713524 | Msa0865060:intron | 55.0% |
| TTCACTCAAGCGCCATGGGG+AGG | + | chr5_4:65713195-65713214 | Msa0865060:CDS | 60.0% | |
| !! | GGAGGTTGGTACCATCCCCA+TGG | - | chr5_4:65713820-65713839 | None:intergenic | 60.0% |
| TTCACTCAAGCGCCATGGGG+AGG | + | chr5_4:65713195-65713214 | Msa0865060:CDS | 60.0% | |
| !! | GGAGGTTGGTACCATCCCCA+TGG | - | chr5_4:65713820-65713839 | None:intergenic | 60.0% |
| ! | GACTGGTGGGTCTCGACCAG+AGG | + | chr5_4:65712640-65712659 | Msa0865060:CDS | 65.0% |
| ! | GACTGGTGGGTCTCGACCAG+AGG | + | chr5_4:65712640-65712659 | Msa0865060:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 65711535 | 65713861 | 65711535 | ID=Msa0865060;Name=Msa0865060 |
| chr5_4 | mRNA | 65711535 | 65713861 | 65711535 | ID=Msa0865060-mRNA-1;Parent=Msa0865060;Name=Msa0865060-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0.5|0.42|0.71|0.66|0.71|7|49|223 |
| chr5_4 | exon | 65711535 | 65711620 | 65711535 | ID=Msa0865060-mRNA-1:exon:20754;Parent=Msa0865060-mRNA-1 |
| chr5_4 | exon | 65712091 | 65712175 | 65712091 | ID=Msa0865060-mRNA-1:exon:20755;Parent=Msa0865060-mRNA-1 |
| chr5_4 | exon | 65712584 | 65712661 | 65712584 | ID=Msa0865060-mRNA-1:exon:20756;Parent=Msa0865060-mRNA-1 |
| chr5_4 | exon | 65712695 | 65712903 | 65712695 | ID=Msa0865060-mRNA-1:exon:20757;Parent=Msa0865060-mRNA-1 |
| chr5_4 | exon | 65713004 | 65713064 | 65713004 | ID=Msa0865060-mRNA-1:exon:20758;Parent=Msa0865060-mRNA-1 |
| chr5_4 | exon | 65713150 | 65713256 | 65713150 | ID=Msa0865060-mRNA-1:exon:20759;Parent=Msa0865060-mRNA-1 |
| chr5_4 | exon | 65713767 | 65713861 | 65713767 | ID=Msa0865060-mRNA-1:exon:20760;Parent=Msa0865060-mRNA-1 |
| chr5_4 | CDS | 65711535 | 65711620 | 65711535 | ID=Msa0865060-mRNA-1:cds;Parent=Msa0865060-mRNA-1 |
| chr5_4 | CDS | 65712091 | 65712175 | 65712091 | ID=Msa0865060-mRNA-1:cds;Parent=Msa0865060-mRNA-1 |
| chr5_4 | CDS | 65712584 | 65712661 | 65712584 | ID=Msa0865060-mRNA-1:cds;Parent=Msa0865060-mRNA-1 |
| chr5_4 | CDS | 65712695 | 65712903 | 65712695 | ID=Msa0865060-mRNA-1:cds;Parent=Msa0865060-mRNA-1 |
| chr5_4 | CDS | 65713004 | 65713064 | 65713004 | ID=Msa0865060-mRNA-1:cds;Parent=Msa0865060-mRNA-1 |
| chr5_4 | CDS | 65713150 | 65713256 | 65713150 | ID=Msa0865060-mRNA-1:cds;Parent=Msa0865060-mRNA-1 |
| chr5_4 | CDS | 65713767 | 65713812 | 65713767 | ID=Msa0865060-mRNA-1:cds;Parent=Msa0865060-mRNA-1 |
| chr5_4 | three_prime_UTR | 65713813 | 65713861 | 65713813 | ID=Msa0865060-mRNA-1:three_prime_utr;Parent=Msa0865060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
