Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0841340 | XP_003612804.1 | 95.181 | 83 | 3 | 1 | 1 | 83 | 1 | 82 | 1.34e-45 | 152 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0841340 | sp|Q9ZRA3|DAD1_PEA | 86.486 | 74 | 10 | 0 | 10 | 83 | 2 | 75 | 1.01e-39 | 130 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0841340 | G7KCB7 | 95.181 | 83 | 3 | 1 | 1 | 83 | 1 | 82 | 6.41e-46 | 152 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0001450 | Msa0841340 | 0.808521 | 2.973241e-50 | -8.615850e-47 |
Msa0003700 | Msa0841340 | 0.836010 | 1.201980e-56 | -8.615850e-47 |
Msa0017510 | Msa0841340 | 0.813727 | 2.210472e-51 | -8.615850e-47 |
Msa0028420 | Msa0841340 | 0.806399 | 8.383730e-50 | -8.615850e-47 |
Msa0031340 | Msa0841340 | 0.810408 | 1.170136e-50 | -8.615850e-47 |
Msa0044000 | Msa0841340 | 0.803255 | 3.803062e-49 | -8.615850e-47 |
Msa0046100 | Msa0841340 | 0.803496 | 3.391178e-49 | -8.615850e-47 |
Msa0047070 | Msa0841340 | 0.817355 | 3.443358e-52 | -8.615850e-47 |
Msa0051020 | Msa0841340 | 0.812228 | 4.712379e-51 | -8.615850e-47 |
Msa0063890 | Msa0841340 | 0.816791 | 4.609925e-52 | -8.615850e-47 |
Msa0081520 | Msa0841340 | 0.818434 | 1.964397e-52 | -8.615850e-47 |
Msa0089630 | Msa0841340 | 0.809876 | 1.523324e-50 | -8.615850e-47 |
Msa0090570 | Msa0841340 | 0.817078 | 3.973932e-52 | -8.615850e-47 |
Msa0091600 | Msa0841340 | 0.816493 | 5.375938e-52 | -8.615850e-47 |
Msa0092790 | Msa0841340 | 0.802683 | 4.993049e-49 | -8.615850e-47 |
Msa0101270 | Msa0841340 | 0.803637 | 3.170249e-49 | -8.615850e-47 |
Msa0101440 | Msa0841340 | 0.818742 | 1.672732e-52 | -8.615850e-47 |
Msa0110970 | Msa0841340 | 0.805481 | 1.307348e-49 | -8.615850e-47 |
Msa0114060 | Msa0841340 | 0.803667 | 3.124811e-49 | -8.615850e-47 |
Msa0602870 | Msa0841340 | 0.809173 | 2.156235e-50 | -8.615850e-47 |
Msa0608320 | Msa0841340 | 0.806507 | 7.954164e-50 | -8.615850e-47 |
Msa0626450 | Msa0841340 | 0.843709 | 1.185773e-58 | -8.615850e-47 |
Msa0626490 | Msa0841340 | 0.843011 | 1.820634e-58 | -8.615850e-47 |
Msa0638480 | Msa0841340 | 0.815317 | 9.833870e-52 | -8.615850e-47 |
Msa0639430 | Msa0841340 | 0.802600 | 5.195798e-49 | -8.615850e-47 |
Msa0661650 | Msa0841340 | 0.803148 | 4.003576e-49 | -8.615850e-47 |
Msa0663390 | Msa0841340 | 0.802050 | 6.742932e-49 | -8.615850e-47 |
Msa0664600 | Msa0841340 | 0.846291 | 2.381733e-59 | -8.615850e-47 |
Msa0707250 | Msa0841340 | 0.821607 | 3.690197e-53 | -8.615850e-47 |
Msa0725050 | Msa0841340 | 0.803903 | 2.792010e-49 | -8.615850e-47 |
Msa0728630 | Msa0841340 | 0.804158 | 2.470303e-49 | -8.615850e-47 |
Msa0729720 | Msa0841340 | 0.808311 | 3.296914e-50 | -8.615850e-47 |
Msa0730430 | Msa0841340 | 0.801076 | 1.068078e-48 | -8.615850e-47 |
Msa0738040 | Msa0841340 | 0.804033 | 2.622458e-49 | -8.615850e-47 |
Msa0740640 | Msa0841340 | 0.809400 | 1.927839e-50 | -8.615850e-47 |
Msa0785210 | Msa0841340 | 0.816520 | 5.299871e-52 | -8.615850e-47 |
Msa0806790 | Msa0841340 | 0.802113 | 6.544847e-49 | -8.615850e-47 |
Msa0806800 | Msa0841340 | 0.824303 | 8.681848e-54 | -8.615850e-47 |
Msa0807530 | Msa0841340 | 0.803632 | 3.177521e-49 | -8.615850e-47 |
Msa0820770 | Msa0841340 | 0.803605 | 3.218292e-49 | -8.615850e-47 |
Msa0832340 | Msa0841340 | 0.833987 | 3.889001e-56 | -8.615850e-47 |
Msa0841340 | Msa0861090 | 0.803608 | 3.214423e-49 | -8.615850e-47 |
Msa0841340 | Msa0861870 | 0.802905 | 4.494289e-49 | -8.615850e-47 |
Msa0841340 | Msa0865060 | 0.807561 | 4.760950e-50 | -8.615850e-47 |
Msa0841340 | Msa0875290 | 0.803433 | 3.493575e-49 | -8.615850e-47 |
Msa0841340 | Msa0880140 | 0.807824 | 4.185901e-50 | -8.615850e-47 |
Msa0841340 | Msa0897330 | 0.801481 | 8.822858e-49 | -8.615850e-47 |
Msa0841340 | Msa0938480 | 0.813521 | 2.454111e-51 | -8.615850e-47 |
Msa0841340 | Msa0945110 | 0.820151 | 7.981143e-53 | -8.615850e-47 |
Msa0841340 | Msa0951280 | 0.803166 | 3.968508e-49 | -8.615850e-47 |
Msa0841340 | Msa0963270 | 0.800051 | 1.727622e-48 | -8.615850e-47 |
Msa0841340 | Msa0967380 | 0.803857 | 2.853731e-49 | -8.615850e-47 |
Msa0841340 | Msa0967870 | 0.800132 | 1.663570e-48 | -8.615850e-47 |
Msa0841340 | Msa0969520 | 0.812813 | 3.509335e-51 | -8.615850e-47 |
Msa0841340 | Msa1020510 | 0.809582 | 1.762300e-50 | -8.615850e-47 |
Msa0841340 | Msa1020670 | 0.807805 | 4.224825e-50 | -8.615850e-47 |
Msa0841340 | Msa1023500 | 0.818485 | 1.912685e-52 | -8.615850e-47 |
Msa0841340 | Msa1029250 | 0.817026 | 4.082438e-52 | -8.615850e-47 |
Msa0841340 | Msa1078170 | 0.815663 | 8.237954e-52 | -8.615850e-47 |
Msa0841340 | Msa1085200 | 0.805676 | 1.189955e-49 | -8.615850e-47 |
Msa0841340 | Msa1092010 | 0.805046 | 1.612525e-49 | -8.615850e-47 |
Msa0841340 | Msa1101090 | 0.829739 | 4.348559e-55 | -8.615850e-47 |
Msa0841340 | Msa1111130 | 0.824030 | 1.006662e-53 | -8.615850e-47 |
Msa0841340 | Msa1124110 | 0.827824 | 1.264061e-54 | -8.615850e-47 |
Msa0841340 | Msa1135470 | 0.807342 | 5.296715e-50 | -8.615850e-47 |
Msa0841340 | Msa1137570 | 0.835307 | 1.810745e-56 | -8.615850e-47 |
Msa0841340 | Msa1140210 | 0.803025 | 4.244584e-49 | -8.615850e-47 |
Msa0841340 | Msa1151910 | 0.823548 | 1.305638e-53 | -8.615850e-47 |
Msa0841340 | Msa1154710 | 0.801823 | 7.506581e-49 | -8.615850e-47 |
Msa0841340 | Msa1168950 | 0.817136 | 3.856741e-52 | -8.615850e-47 |
Msa0841340 | Msa1169040 | 0.808563 | 2.912263e-50 | -8.615850e-47 |
Msa0841340 | Msa1183120 | 0.824684 | 7.063177e-54 | -8.615850e-47 |
Msa0841340 | Msa1189070 | 0.803741 | 3.015815e-49 | -8.615850e-47 |
Msa0841340 | Msa1196440 | 0.802676 | 5.010282e-49 | -8.615850e-47 |
Msa0841340 | Msa1199570 | 0.816549 | 5.222753e-52 | -8.615850e-47 |
Msa0841340 | Msa1199830 | -0.804710 | 1.895694e-49 | -8.615850e-47 |
Msa0841340 | Msa1199990 | 0.801419 | 9.086859e-49 | -8.615850e-47 |
Msa0841340 | Msa1205280 | 0.804100 | 2.540127e-49 | -8.615850e-47 |
Msa0841340 | Msa1209460 | 0.818922 | 1.521916e-52 | -8.615850e-47 |
Msa0841340 | Msa1213140 | 0.801490 | 8.787402e-49 | -8.615850e-47 |
Msa0841340 | Msa1225130 | 0.818206 | 2.211815e-52 | -8.615850e-47 |
Msa0841340 | Msa1225700 | 0.819366 | 1.205946e-52 | -8.615850e-47 |
Msa0841340 | Msa1229500 | 0.827033 | 1.956064e-54 | -8.615850e-47 |
Msa0841340 | Msa1232740 | 0.804324 | 2.281467e-49 | -8.615850e-47 |
Msa0841340 | Msa1236100 | 0.806636 | 7.472797e-50 | -8.615850e-47 |
Msa0841340 | Msa1250530 | 0.809150 | 2.181844e-50 | -8.615850e-47 |
Msa0841340 | Msa1271990 | 0.838681 | 2.488970e-57 | -8.615850e-47 |
Msa0841340 | Msa1279400 | 0.817820 | 2.704086e-52 | -8.615850e-47 |
Msa0841340 | Msa1284550 | 0.800897 | 1.161589e-48 | -8.615850e-47 |
Msa0841340 | Msa1285550 | 0.802877 | 4.553568e-49 | -8.615850e-47 |
Msa0841340 | Msa1286800 | 0.815663 | 8.238863e-52 | -8.615850e-47 |
Msa0841340 | Msa1287220 | 0.807781 | 4.275099e-50 | -8.615850e-47 |
Msa0841340 | Msa1297230 | 0.814384 | 1.583242e-51 | -8.615850e-47 |
Msa0841340 | Msa1297290 | 0.805405 | 1.356235e-49 | -8.615850e-47 |
Msa0841340 | Msa1313150 | 0.800415 | 1.456584e-48 | -8.615850e-47 |
Msa0841340 | Msa1313320 | 0.803592 | 3.239410e-49 | -8.615850e-47 |
Msa0841340 | Msa1314650 | 0.803000 | 4.294974e-49 | -8.615850e-47 |
Msa0841340 | Msa1324080 | 0.811030 | 8.582082e-51 | -8.615850e-47 |
Msa0841340 | Msa1328710 | 0.817213 | 3.706160e-52 | -8.615850e-47 |
Msa0841340 | Msa1333480 | 0.807961 | 3.914133e-50 | -8.615850e-47 |
Msa0841340 | Msa1343430 | 0.802019 | 6.842024e-49 | -8.615850e-47 |
Msa0841340 | Msa1353470 | 0.821271 | 4.413155e-53 | -8.615850e-47 |
Msa0841340 | Msa1360440 | 0.804418 | 2.181282e-49 | -8.615850e-47 |
Msa0841340 | Msa1373330 | 0.804047 | 2.604999e-49 | -8.615850e-47 |
Msa0841340 | Msa1374040 | 0.810409 | 1.169404e-50 | -8.615850e-47 |
Msa0841340 | Msa1375560 | 0.815642 | 8.325352e-52 | -8.615850e-47 |
Msa0841340 | Msa1382540 | 0.816181 | 6.312247e-52 | -8.615850e-47 |
Msa0841340 | Msa1385000 | 0.805372 | 1.377838e-49 | -8.615850e-47 |
Msa0841340 | Msa1387870 | 0.805253 | 1.459703e-49 | -8.615850e-47 |
Msa0841340 | Msa1394380 | 0.811238 | 7.736409e-51 | -8.615850e-47 |
Msa0841340 | Msa1419370 | 0.816226 | 6.166650e-52 | -8.615850e-47 |
Msa0841340 | Msa1422580 | 0.815895 | 7.311800e-52 | -8.615850e-47 |
Msa0841340 | Msa1433390 | 0.801338 | 9.437390e-49 | -8.615850e-47 |
Msa0841340 | Msa1435270 | 0.819944 | 8.898962e-53 | -8.615850e-47 |
Msa0841340 | Msa1437940 | 0.804667 | 1.935511e-49 | -8.615850e-47 |
Msa0841340 | Msa1440960 | 0.829014 | 6.524115e-55 | -8.615850e-47 |
Msa0841340 | Msa1446810 | 0.804703 | 1.902003e-49 | -8.615850e-47 |
Msa0841340 | Msa1451160 | 0.818287 | 2.120602e-52 | -8.615850e-47 |
Msa0841340 | Msa1454570 | 0.800154 | 1.646078e-48 | -8.615850e-47 |
Msa0841340 | Msa1464810 | 0.814437 | 1.541606e-51 | -8.615850e-47 |
Msa0124060 | Msa0841340 | 0.817815 | 2.711548e-52 | -8.615850e-47 |
Msa0127800 | Msa0841340 | 0.835759 | 1.391663e-56 | -8.615850e-47 |
Msa0145580 | Msa0841340 | 0.816997 | 4.143026e-52 | -8.615850e-47 |
Msa0146260 | Msa0841340 | 0.811084 | 8.355042e-51 | -8.615850e-47 |
Msa0157290 | Msa0841340 | 0.813708 | 2.232813e-51 | -8.615850e-47 |
Msa0159930 | Msa0841340 | 0.810500 | 1.117711e-50 | -8.615850e-47 |
Msa0168500 | Msa0841340 | 0.824744 | 6.835739e-54 | -8.615850e-47 |
Msa0170230 | Msa0841340 | 0.809957 | 1.463644e-50 | -8.615850e-47 |
Msa0171290 | Msa0841340 | 0.815156 | 1.068059e-51 | -8.615850e-47 |
Msa0195630 | Msa0841340 | 0.814288 | 1.663052e-51 | -8.615850e-47 |
Msa0204960 | Msa0841340 | 0.803477 | 3.421896e-49 | -8.615850e-47 |
Msa0211150 | Msa0841340 | 0.847865 | 8.825950e-60 | -8.615850e-47 |
Msa0212990 | Msa0841340 | 0.800731 | 1.255853e-48 | -8.615850e-47 |
Msa0225100 | Msa0841340 | 0.810804 | 9.608891e-51 | -8.615850e-47 |
Msa0225320 | Msa0841340 | 0.811367 | 7.252363e-51 | -8.615850e-47 |
Msa0237410 | Msa0841340 | 0.802245 | 6.147390e-49 | -8.615850e-47 |
Msa0367870 | Msa0841340 | 0.825481 | 4.579734e-54 | -8.615850e-47 |
Msa0369950 | Msa0841340 | 0.807808 | 4.217663e-50 | -8.615850e-47 |
Msa0376350 | Msa0841340 | 0.812849 | 3.447483e-51 | -8.615850e-47 |
Msa0378720 | Msa0841340 | 0.822837 | 1.912874e-53 | -8.615850e-47 |
Msa0388960 | Msa0841340 | 0.801806 | 7.569162e-49 | -8.615850e-47 |
Msa0391430 | Msa0841340 | 0.800851 | 1.187318e-48 | -8.615850e-47 |
Msa0393080 | Msa0841340 | 0.811423 | 7.054057e-51 | -8.615850e-47 |
Msa0410500 | Msa0841340 | 0.800987 | 1.113603e-48 | -8.615850e-47 |
Msa0410650 | Msa0841340 | 0.802522 | 5.390328e-49 | -8.615850e-47 |
Msa0417270 | Msa0841340 | 0.802804 | 4.714206e-49 | -8.615850e-47 |
Msa0417360 | Msa0841340 | 0.812155 | 4.888057e-51 | -8.615850e-47 |
Msa0417880 | Msa0841340 | 0.811367 | 7.252363e-51 | -8.615850e-47 |
Msa0418190 | Msa0841340 | 0.806124 | 9.578616e-50 | -8.615850e-47 |
Msa0424790 | Msa0841340 | 0.807911 | 4.009793e-50 | -8.615850e-47 |
Msa0428150 | Msa0841340 | 0.807204 | 5.667147e-50 | -8.615850e-47 |
Msa0440750 | Msa0841340 | 0.817495 | 3.201799e-52 | -8.615850e-47 |
Msa0464260 | Msa0841340 | 0.812958 | 3.262085e-51 | -8.615850e-47 |
Msa0464680 | Msa0841340 | 0.827047 | 1.941473e-54 | -8.615850e-47 |
Msa0467430 | Msa0841340 | 0.816501 | 5.353540e-52 | -8.615850e-47 |
Msa0467490 | Msa0841340 | 0.804681 | 1.921810e-49 | -8.615850e-47 |
Msa0479170 | Msa0841340 | 0.831060 | 2.067032e-55 | -8.615850e-47 |
Msa0248970 | Msa0841340 | 0.810616 | 1.055007e-50 | -8.615850e-47 |
Msa0249860 | Msa0841340 | 0.823172 | 1.597804e-53 | -8.615850e-47 |
Msa0266180 | Msa0841340 | 0.805055 | 1.605843e-49 | -8.615850e-47 |
Msa0270320 | Msa0841340 | 0.804772 | 1.840056e-49 | -8.615850e-47 |
Msa0287740 | Msa0841340 | 0.805327 | 1.408061e-49 | -8.615850e-47 |
Msa0292400 | Msa0841340 | 0.807934 | 3.965257e-50 | -8.615850e-47 |
Msa0297740 | Msa0841340 | 0.802812 | 4.697298e-49 | -8.615850e-47 |
Msa0304510 | Msa0841340 | 0.808235 | 3.422450e-50 | -8.615850e-47 |
Msa0330340 | Msa0841340 | 0.808710 | 2.709441e-50 | -8.615850e-47 |
Msa0333600 | Msa0841340 | 0.814531 | 1.468983e-51 | -8.615850e-47 |
Msa0336320 | Msa0841340 | 0.807621 | 4.623045e-50 | -8.615850e-47 |
Msa0339500 | Msa0841340 | 0.803180 | 3.942960e-49 | -8.615850e-47 |
Msa0341540 | Msa0841340 | 0.800218 | 1.597561e-48 | -8.615850e-47 |
Msa0487420 | Msa0841340 | 0.801019 | 1.096898e-48 | -8.615850e-47 |
Msa0495320 | Msa0841340 | 0.813047 | 3.118471e-51 | -8.615850e-47 |
Msa0495330 | Msa0841340 | 0.803153 | 3.993925e-49 | -8.615850e-47 |
Msa0507680 | Msa0841340 | 0.813365 | 2.655972e-51 | -8.615850e-47 |
Msa0516170 | Msa0841340 | 0.802900 | 4.504415e-49 | -8.615850e-47 |
Msa0572840 | Msa0841340 | 0.830878 | 2.291991e-55 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0841340 | MtrunA17_Chr5g0410671 | 95.181 | 83 | 3 | 1 | 1 | 83 | 1 | 82 | 1.23e-49 | 152 |
Msa0841340 | MtrunA17_Chr3g0085841 | 88.732 | 71 | 8 | 0 | 13 | 83 | 3 | 73 | 3.45e-41 | 130 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0841340 | AT1G32210.1 | 85.915 | 71 | 10 | 0 | 13 | 83 | 3 | 73 | 1.81e-39 | 126 |
Msa0841340 | AT1G32210.2 | 85.915 | 71 | 10 | 0 | 13 | 83 | 3 | 73 | 1.83e-39 | 126 |
Msa0841340 | AT2G35520.3 | 81.690 | 71 | 13 | 0 | 13 | 83 | 3 | 73 | 8.48e-38 | 122 |
Msa0841340 | AT2G35520.1 | 81.690 | 71 | 13 | 0 | 13 | 83 | 3 | 73 | 8.48e-38 | 122 |
Msa0841340 | AT2G35520.2 | 80.556 | 72 | 13 | 1 | 13 | 83 | 3 | 74 | 5.99e-36 | 117 |
Find 23 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCATTTAACTCCTTCCTTTC+TGG | 0.079648 | 5_4:-17573772 | Msa0841340:CDS |
TTGTGTAGGGACTGCAGTTT+TGG | 0.309103 | 5_4:-17573740 | Msa0841340:CDS |
CCAGAAAGGAAGGAGTTAAA+TGG | 0.336746 | 5_4:+17573772 | None:intergenic |
AAGACCTGTTACGCGCTCTT+TGG | 0.386859 | 5_4:-17576200 | Msa0841340:CDS |
CAGACCAAAGAGCGCGTAAC+AGG | 0.402996 | 5_4:+17576196 | None:intergenic |
AATTCAACCTTGAGATTTGA+AGG | 0.427498 | 5_4:+17576159 | None:intergenic |
TAATGAGCAGGTAGTTTACA+TGG | 0.468668 | 5_4:-17573812 | Msa0841340:intron |
TCTGGAGTACTCTCTTGTGT+AGG | 0.476123 | 5_4:-17573754 | Msa0841340:CDS |
CTGGAGTACTCTCTTGTGTA+GGG | 0.477751 | 5_4:-17573753 | Msa0841340:CDS |
CAGGTCTTGTGCATCCTTTG+TGG | 0.478801 | 5_4:+17576215 | None:intergenic |
GCAGGTAGTTTACATGGCTC+TGG | 0.513030 | 5_4:-17573806 | Msa0841340:intron |
CGCCACACCTTCAAATCTCA+AGG | 0.514404 | 5_4:-17576166 | Msa0841340:intron |
GGTAGTTTACATGGCTCTGG+TGG | 0.533436 | 5_4:-17573803 | Msa0841340:CDS |
AACCTTGAGATTTGAAGGTG+TGG | 0.550984 | 5_4:+17576164 | None:intergenic |
CACAAGAGAGTACTCCAGAA+AGG | 0.561497 | 5_4:+17573758 | None:intergenic |
AGAGAGTACTCCAGAAAGGA+AGG | 0.562124 | 5_4:+17573762 | None:intergenic |
GTCTTGTGCATCCTTTGTGG+TGG | 0.567641 | 5_4:+17576218 | None:intergenic |
ATCTTCTTCTTCCACCACAA+AGG | 0.572889 | 5_4:-17576229 | Msa0841340:CDS |
CTTGAGATTTGAAGGTGTGG+CGG | 0.618708 | 5_4:+17576167 | None:intergenic |
GTAGTTTACATGGCTCTGGT+GGG | 0.631716 | 5_4:-17573802 | Msa0841340:CDS |
GAGAGCGGTGAAAACAGCGA+AGG | 0.649072 | 5_4:+17576042 | None:intergenic |
GGGAAGAACCTGAAGGAGAG+CGG | 0.672467 | 5_4:+17576027 | None:intergenic |
GATGAAGATGAAGAAGACGA+CGG | 0.700736 | 5_4:+17576249 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAACAGAAAGATTAATATA+TGG | + | chr5_4:17574015-17574034 | None:intergenic | 15.0% |
!!! | TTTGCTCTTATTTATAATTA+TGG | - | chr5_4:17574120-17574139 | Msa0841340:intron | 15.0% |
!!! | CATTTTGTTTAATTGTATTA+TGG | + | chr5_4:17575005-17575024 | None:intergenic | 15.0% |
!! | AAAGTATATAAAAATTGATC+AGG | - | chr5_4:17575231-17575250 | Msa0841340:intron | 15.0% |
!!! | TTTTAACGGTTTTAAAAAAA+TGG | - | chr5_4:17576068-17576087 | Msa0841340:intron | 15.0% |
!!! | GCAAATAAGAAATTATTTTT+TGG | - | chr5_4:17576090-17576109 | Msa0841340:intron | 15.0% |
!! | ATGAAGAAATGAAATGAAAA+GGG | + | chr5_4:17573877-17573896 | None:intergenic | 20.0% |
!! | TATGAAGAAATGAAATGAAA+AGG | + | chr5_4:17573878-17573897 | None:intergenic | 20.0% |
!! | AAGATAATTGCACTTAAATA+AGG | + | chr5_4:17574569-17574588 | None:intergenic | 20.0% |
!!! | TAACAACATATTGTTTTGAA+TGG | + | chr5_4:17574658-17574677 | None:intergenic | 20.0% |
!! | ATTCAAAACAATATGTTGTT+AGG | - | chr5_4:17574657-17574676 | Msa0841340:intron | 20.0% |
!! | TTTGTTTAATTGTATTATGG+AGG | + | chr5_4:17575002-17575021 | None:intergenic | 20.0% |
!!! | TAATGGCTCTAAATAATATT+GGG | + | chr5_4:17575109-17575128 | None:intergenic | 20.0% |
!!! | TTAATGGCTCTAAATAATAT+TGG | + | chr5_4:17575110-17575129 | None:intergenic | 20.0% |
!! | TCTGTATGTTTATACATTAA+TGG | + | chr5_4:17575126-17575145 | None:intergenic | 20.0% |
!! | TAAAAGTAGAAGAATATCAT+TGG | + | chr5_4:17575183-17575202 | None:intergenic | 20.0% |
!!! | ATGATATTCTTCTACTTTTA+TGG | - | chr5_4:17575183-17575202 | Msa0841340:intron | 20.0% |
!!! | TGATATTCTTCTACTTTTAT+GGG | - | chr5_4:17575184-17575203 | Msa0841340:intron | 20.0% |
!!! | TTTGATTAATTTTTTTCAGC+AGG | + | chr5_4:17575211-17575230 | None:intergenic | 20.0% |
!!! | ACTTGTTTTATGAAAAATCA+TGG | - | chr5_4:17575378-17575397 | Msa0841340:intron | 20.0% |
!!! | AATTATTTTGTTGTAGTTCA+TGG | + | chr5_4:17575853-17575872 | None:intergenic | 20.0% |
!!! | TAATGAGTTCTTACTTTTAA+CGG | - | chr5_4:17576054-17576073 | Msa0841340:CDS | 20.0% |
!!! | AAGAAATTATTTTTTGGTGA+AGG | - | chr5_4:17576096-17576115 | Msa0841340:intron | 20.0% |
!! | TTTTCCTGATTATGACATTT+TGG | - | chr5_4:17574153-17574172 | Msa0841340:intron | 25.0% |
! | TTAACCAAAATGTCATAATC+AGG | + | chr5_4:17574160-17574179 | None:intergenic | 25.0% |
! | AGTTCATATTGAACAAAGAT+AGG | - | chr5_4:17574481-17574500 | Msa0841340:intron | 25.0% |
! | GTTCATATTGAACAAAGATA+GGG | - | chr5_4:17574482-17574501 | Msa0841340:intron | 25.0% |
!! | TGATTTTAAATGTAACAAGC+TGG | - | chr5_4:17574601-17574620 | Msa0841340:intron | 25.0% |
! | AACCAGATATTTACTAGAAT+AGG | - | chr5_4:17574861-17574880 | Msa0841340:intron | 25.0% |
! | CATCTGATATGCAATAAAAA+AGG | - | chr5_4:17575073-17575092 | Msa0841340:intron | 25.0% |
!! | CTATAAATCTCTTTTCACTT+TGG | + | chr5_4:17575283-17575302 | None:intergenic | 25.0% |
! | TATGAAAAATCATGGTAAGT+AGG | - | chr5_4:17575386-17575405 | Msa0841340:intron | 25.0% |
! | ATGAAAAATCATGGTAAGTA+GGG | - | chr5_4:17575387-17575406 | Msa0841340:intron | 25.0% |
! | CTTCAAATCAAGAATAATCT+AGG | + | chr5_4:17575421-17575440 | None:intergenic | 25.0% |
! | TACAAGAAAATGATGATTGT+GGG | + | chr5_4:17575514-17575533 | None:intergenic | 25.0% |
! | TTACAAGAAAATGATGATTG+TGG | + | chr5_4:17575515-17575534 | None:intergenic | 25.0% |
!! | TATATTATAGTCAGAGTGTT+AGG | - | chr5_4:17575560-17575579 | Msa0841340:intron | 25.0% |
! | TTACACATATATGCTTTCTT+AGG | + | chr5_4:17575671-17575690 | None:intergenic | 25.0% |
! | AAGCATATATGTGTAAGATA+TGG | - | chr5_4:17575675-17575694 | Msa0841340:intron | 25.0% |
AATTCAACCTTGAGATTTGA+AGG | + | chr5_4:17573840-17573859 | None:intergenic | 30.0% | |
AGAAATGAAATGAAAAGGGA+AGG | + | chr5_4:17573873-17573892 | None:intergenic | 30.0% | |
AATGATCTGAAAGAGGAAAT+GGG | + | chr5_4:17573921-17573940 | None:intergenic | 30.0% | |
ACAGATCTAGAAGAAATTGA+GGG | + | chr5_4:17573992-17574011 | None:intergenic | 30.0% | |
!!! | CTTTTTTCTTTCTAACCTTC+TGG | + | chr5_4:17574406-17574425 | None:intergenic | 30.0% |
CAATATGTTGTTAGGAAACT+TGG | - | chr5_4:17574665-17574684 | Msa0841340:intron | 30.0% | |
CACCTATTCTAGTAAATATC+TGG | + | chr5_4:17574866-17574885 | None:intergenic | 30.0% | |
CATTGAGTTAGTAATCAAAG+AGG | + | chr5_4:17574971-17574990 | None:intergenic | 30.0% | |
GAATATCATTGGAATTCGTA+AGG | + | chr5_4:17575172-17575191 | None:intergenic | 30.0% | |
AGTAAAAGAACAATAGTCGT+AGG | - | chr5_4:17575340-17575359 | Msa0841340:intron | 30.0% | |
AATTGCCATATATTACTCGT+GGG | + | chr5_4:17575469-17575488 | None:intergenic | 30.0% | |
AAATTGCCATATATTACTCG+TGG | + | chr5_4:17575470-17575489 | None:intergenic | 30.0% | |
AATGATGATTGTGGGTAAAA+GGG | + | chr5_4:17575506-17575525 | None:intergenic | 30.0% | |
AAATGATGATTGTGGGTAAA+AGG | + | chr5_4:17575507-17575526 | None:intergenic | 30.0% | |
TAAGTTTATGCATACTGGAT+GGG | + | chr5_4:17575598-17575617 | None:intergenic | 30.0% | |
!!! | TTGTTGTTTTCAGCCAATAT+GGG | + | chr5_4:17575786-17575805 | None:intergenic | 30.0% |
!!! | ATTGTTGTTTTCAGCCAATA+TGG | + | chr5_4:17575787-17575806 | None:intergenic | 30.0% |
!! | CCATATTTTGTTGTAGTTCA+TGG | + | chr5_4:17575887-17575906 | None:intergenic | 30.0% |
CCATGAACTACAACAAAATA+TGG | - | chr5_4:17575850-17575869 | Msa0841340:intron | 30.0% | |
! | ATATGGATTTTGCAGAAGAT+AGG | - | chr5_4:17575901-17575920 | Msa0841340:intron | 30.0% |
GGTTTACTTATTTAGAAGCT+TGG | + | chr5_4:17575986-17576005 | None:intergenic | 30.0% | |
AAGCAAGATTGCATATTTCT+TGG | + | chr5_4:17576007-17576026 | None:intergenic | 30.0% | |
GAACTCATTAAATGAGAAAC+TGG | + | chr5_4:17576044-17576063 | None:intergenic | 30.0% | |
!!! | TATTTTTTGGTGAAGGTTTG+AGG | - | chr5_4:17576103-17576122 | Msa0841340:intron | 30.0% |
! | ACATTCTTTTCTTAATGAGC+AGG | - | chr5_4:17576172-17576191 | Msa0841340:CDS | 30.0% |
ATGATCTGAAAGAGGAAATG+GGG | + | chr5_4:17573920-17573939 | None:intergenic | 35.0% | |
CAATGATCTGAAAGAGGAAA+TGG | + | chr5_4:17573922-17573941 | None:intergenic | 35.0% | |
AGAGATCAATGATCTGAAAG+AGG | + | chr5_4:17573928-17573947 | None:intergenic | 35.0% | |
GACAGATCTAGAAGAAATTG+AGG | + | chr5_4:17573993-17574012 | None:intergenic | 35.0% | |
TGCACTACATCAAACAACTA+AGG | + | chr5_4:17574218-17574237 | None:intergenic | 35.0% | |
ACCAAGTGATTGAACTTAAG+TGG | - | chr5_4:17574249-17574268 | Msa0841340:intron | 35.0% | |
CCAAGTGATTGAACTTAAGT+GGG | - | chr5_4:17574250-17574269 | Msa0841340:intron | 35.0% | |
TATTGAACAAAGATAGGGCT+AGG | - | chr5_4:17574487-17574506 | Msa0841340:intron | 35.0% | |
TTGTATGTAGCTACTTCACT+AGG | - | chr5_4:17574716-17574735 | Msa0841340:intron | 35.0% | |
CAAGCATTAAGATAGCCAAA+AGG | - | chr5_4:17574801-17574820 | Msa0841340:intron | 35.0% | |
! | TGATGCTATTGCTATCCTTT+TGG | + | chr5_4:17574819-17574838 | None:intergenic | 35.0% |
CTAGAATAGGTGTAGAAGAT+AGG | - | chr5_4:17574874-17574893 | Msa0841340:intron | 35.0% | |
TCATGATCAGGATTGAATGA+GGG | + | chr5_4:17574938-17574957 | None:intergenic | 35.0% | |
! | TCTTTTCACTTTGGTTGTTG+AGG | + | chr5_4:17575274-17575293 | None:intergenic | 35.0% |
ATCTCCTCCACTATTGTTTA+TGG | - | chr5_4:17575314-17575333 | Msa0841340:intron | 35.0% | |
TCTCCTCCACTATTGTTTAT+GGG | - | chr5_4:17575315-17575334 | Msa0841340:intron | 35.0% | |
TACTTCCCCATAAACAATAG+TGG | + | chr5_4:17575324-17575343 | None:intergenic | 35.0% | |
AAAATCATGGTAAGTAGGGT+TGG | - | chr5_4:17575391-17575410 | Msa0841340:intron | 35.0% | |
CTAAGTTTATGCATACTGGA+TGG | + | chr5_4:17575599-17575618 | None:intergenic | 35.0% | |
CATCCAGTATGCATAAACTT+AGG | - | chr5_4:17575597-17575616 | Msa0841340:intron | 35.0% | |
ACACCTAAGTTTATGCATAC+TGG | + | chr5_4:17575603-17575622 | None:intergenic | 35.0% | |
TTTGTTTCCAAGAGATTTGC+AGG | - | chr5_4:17575636-17575655 | Msa0841340:intron | 35.0% | |
TTCAGCCAATATGGGAAATA+AGG | + | chr5_4:17575778-17575797 | None:intergenic | 35.0% | |
TAATGAGCAGGTAGTTTACA+TGG | - | chr5_4:17576184-17576203 | Msa0841340:CDS | 35.0% | |
GATGAAGATGAAGAAGACGA+CGG | + | chr5_4:17573750-17573769 | None:intergenic | 40.0% | |
ATCTTCTTCTTCCACCACAA+AGG | - | chr5_4:17573767-17573786 | Msa0841340:CDS | 40.0% | |
AACCTTGAGATTTGAAGGTG+TGG | + | chr5_4:17573835-17573854 | None:intergenic | 40.0% | |
TGAAAGAGGAAATGGGGTTA+GGG | + | chr5_4:17573914-17573933 | None:intergenic | 40.0% | |
AAATTGAGGGAAGAACCTGA+AGG | + | chr5_4:17573979-17573998 | None:intergenic | 40.0% | |
CCCACTTAAGTTCAATCACT+TGG | + | chr5_4:17574253-17574272 | None:intergenic | 40.0% | |
TAATGAGCTTCCGTTGAAGA+CGG | - | chr5_4:17574273-17574292 | Msa0841340:intron | 40.0% | |
CCTAAACAATCCGTCTTCAA+CGG | + | chr5_4:17574286-17574305 | None:intergenic | 40.0% | |
! | AGCTAAGTATTGTTTCCGCT+GGG | + | chr5_4:17574326-17574345 | None:intergenic | 40.0% |
! | TAGCTAAGTATTGTTTCCGC+TGG | + | chr5_4:17574327-17574346 | None:intergenic | 40.0% |
! | GCTAGATTTTACTTACCTCC+TGG | - | chr5_4:17574343-17574362 | Msa0841340:intron | 40.0% |
! | TAGTAATTTGGAGTTCAGCC+AGG | + | chr5_4:17574364-17574383 | None:intergenic | 40.0% |
TGGCTGAACTCCAAATTACT+AGG | - | chr5_4:17574363-17574382 | Msa0841340:intron | 40.0% | |
!! | TTCTAACCTTCTGGTTCACA+AGG | + | chr5_4:17574397-17574416 | None:intergenic | 40.0% |
CATGTATGCCTTGTATGAGT+AGG | - | chr5_4:17574431-17574450 | Msa0841340:intron | 40.0% | |
TCTCGAAACCTACTCATACA+AGG | + | chr5_4:17574442-17574461 | None:intergenic | 40.0% | |
ACAAAGATAGGGCTAGGTTT+AGG | - | chr5_4:17574493-17574512 | Msa0841340:intron | 40.0% | |
GAATGGCATAATTGAGCTGT+CGG | + | chr5_4:17574641-17574660 | None:intergenic | 40.0% | |
!! | CGGAGATTGTTGATGATTCT+AGG | + | chr5_4:17574768-17574787 | None:intergenic | 40.0% |
CTCATGATCAGGATTGAATG+AGG | + | chr5_4:17574939-17574958 | None:intergenic | 40.0% | |
!! | ACTGTCTTTCTAGCTACAGA+GGG | + | chr5_4:17575030-17575049 | None:intergenic | 40.0% |
! | ATAGTGGAGGAGATCTTTCT+GGG | + | chr5_4:17575308-17575327 | None:intergenic | 40.0% |
! | AATAGTGGAGGAGATCTTTC+TGG | + | chr5_4:17575309-17575328 | None:intergenic | 40.0% |
CTCCTCCACTATTGTTTATG+GGG | - | chr5_4:17575316-17575335 | Msa0841340:intron | 40.0% | |
TTCCCCATAAACAATAGTGG+AGG | + | chr5_4:17575321-17575340 | None:intergenic | 40.0% | |
TGTGACCCACGAGTAATATA+TGG | - | chr5_4:17575461-17575480 | Msa0841340:intron | 40.0% | |
TGATTGTGGGTAAAAGGGAA+AGG | + | chr5_4:17575501-17575520 | None:intergenic | 40.0% | |
TTACACTCCTGCAAATCTCT+TGG | + | chr5_4:17575646-17575665 | None:intergenic | 40.0% | |
CTCCATGGACATTGATATGT+AGG | - | chr5_4:17575742-17575761 | Msa0841340:intron | 40.0% | |
CTCCTACATATCAATGTCCA+TGG | + | chr5_4:17575747-17575766 | None:intergenic | 40.0% | |
ATATGGGAAATAAGGAACCC+CGG | + | chr5_4:17575770-17575789 | None:intergenic | 40.0% | |
! | GGGTTCCTTATTTCCCATAT+TGG | - | chr5_4:17575770-17575789 | Msa0841340:intron | 40.0% |
! | AAGGTTTGAGGTCGATAACT+AGG | - | chr5_4:17576115-17576134 | Msa0841340:intron | 40.0% |
CCAGAAAGGAAGGAGTTAAA+TGG | + | chr5_4:17576227-17576246 | None:intergenic | 40.0% | |
CCATTTAACTCCTTCCTTTC+TGG | - | chr5_4:17576224-17576243 | Msa0841340:CDS | 40.0% | |
! | CTTGAGATTTGAAGGTGTGG+CGG | + | chr5_4:17573832-17573851 | None:intergenic | 45.0% |
TGAAAAGGGAAGGAGAGAGA+TGG | + | chr5_4:17573863-17573882 | None:intergenic | 45.0% | |
CTGAAAGAGGAAATGGGGTT+AGG | + | chr5_4:17573915-17573934 | None:intergenic | 45.0% | |
!! | CCGTTGAAGACGGATTGTTT+AGG | - | chr5_4:17574283-17574302 | Msa0841340:intron | 45.0% |
AAACCGAGTTCAAATCCCAG+CGG | - | chr5_4:17574308-17574327 | Msa0841340:intron | 45.0% | |
TTTCCGCTGGGATTTGAACT+CGG | + | chr5_4:17574314-17574333 | None:intergenic | 45.0% | |
! | TAATTTGGAGTTCAGCCAGG+AGG | + | chr5_4:17574361-17574380 | None:intergenic | 45.0% |
GGAAAGGGGTCCTAGTAATT+TGG | + | chr5_4:17574376-17574395 | None:intergenic | 45.0% | |
!! | CTTCTGGTTCACAAGGAAAG+GGG | + | chr5_4:17574390-17574409 | None:intergenic | 45.0% |
!! | CCTTCTGGTTCACAAGGAAA+GGG | + | chr5_4:17574391-17574410 | None:intergenic | 45.0% |
!! | ACCTTCTGGTTCACAAGGAA+AGG | + | chr5_4:17574392-17574411 | None:intergenic | 45.0% |
TCACTAGGCGTCAGTTTATC+TGG | - | chr5_4:17574731-17574750 | Msa0841340:intron | 45.0% | |
ATGCTTGATCGCGAACAAGT+CGG | + | chr5_4:17574788-17574807 | None:intergenic | 45.0% | |
!! | CACTGTCTTTCTAGCTACAG+AGG | + | chr5_4:17575031-17575050 | None:intergenic | 45.0% |
TGTGTAAGATATGGCTAGCG+AGG | - | chr5_4:17575684-17575703 | Msa0841340:intron | 45.0% | |
AGAGTCCTGTAAGTGTAGCT+CGG | - | chr5_4:17575712-17575731 | Msa0841340:intron | 45.0% | |
GGACATTGATATGTAGGAGC+CGG | - | chr5_4:17575748-17575767 | Msa0841340:intron | 45.0% | |
GACATTGATATGTAGGAGCC+GGG | - | chr5_4:17575749-17575768 | Msa0841340:intron | 45.0% | |
ACATTGATATGTAGGAGCCG+GGG | - | chr5_4:17575750-17575769 | Msa0841340:intron | 45.0% | |
!! | GTAGTTTACATGGCTCTGGT+GGG | - | chr5_4:17576194-17576213 | Msa0841340:CDS | 45.0% |
!! | AGAGAGTACTCCAGAAAGGA+AGG | + | chr5_4:17576237-17576256 | None:intergenic | 45.0% |
!! | CACAAGAGAGTACTCCAGAA+AGG | + | chr5_4:17576241-17576260 | None:intergenic | 45.0% |
! | TCTGGAGTACTCTCTTGTGT+AGG | - | chr5_4:17576242-17576261 | Msa0841340:CDS | 45.0% |
! | CTGGAGTACTCTCTTGTGTA+GGG | - | chr5_4:17576243-17576262 | Msa0841340:CDS | 45.0% |
! | TTGTGTAGGGACTGCAGTTT+TGG | - | chr5_4:17576256-17576275 | Msa0841340:CDS | 45.0% |
GTCTTGTGCATCCTTTGTGG+TGG | + | chr5_4:17573781-17573800 | None:intergenic | 50.0% | |
! | CAGGTCTTGTGCATCCTTTG+TGG | + | chr5_4:17573784-17573803 | None:intergenic | 50.0% |
AAGACCTGTTACGCGCTCTT+TGG | - | chr5_4:17573796-17573815 | Msa0841340:CDS | 50.0% | |
CGCCACACCTTCAAATCTCA+AGG | - | chr5_4:17573830-17573849 | Msa0841340:intron | 50.0% | |
! | TGTTTTCACCGCTCTCCTTC+AGG | - | chr5_4:17573961-17573980 | Msa0841340:intron | 50.0% |
CCCTTTCCTTGTGAACCAGA+AGG | - | chr5_4:17574388-17574407 | Msa0841340:intron | 50.0% | |
GGTGACAGTGTCTCATGATC+AGG | + | chr5_4:17574950-17574969 | None:intergenic | 50.0% | |
TCCTGTAAGTGTAGCTCGGT+TGG | - | chr5_4:17575716-17575735 | Msa0841340:intron | 50.0% | |
ACCAACCGAGCTACACTTAC+AGG | + | chr5_4:17575720-17575739 | None:intergenic | 50.0% | |
GCAGGTAGTTTACATGGCTC+TGG | - | chr5_4:17576190-17576209 | Msa0841340:CDS | 50.0% | |
!! | GGTAGTTTACATGGCTCTGG+TGG | - | chr5_4:17576193-17576212 | Msa0841340:CDS | 50.0% |
! | CAGACCAAAGAGCGCGTAAC+AGG | + | chr5_4:17573803-17573822 | None:intergenic | 55.0% |
GAGAGCGGTGAAAACAGCGA+AGG | + | chr5_4:17573957-17573976 | None:intergenic | 55.0% | |
GGGAAGAACCTGAAGGAGAG+CGG | + | chr5_4:17573972-17573991 | None:intergenic | 55.0% | |
!! | TAGCTCGGTTGGTAGCTCCA+TGG | - | chr5_4:17575727-17575746 | Msa0841340:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_4 | gene | 17573738 | 17576280 | 17573738 | ID=Msa0841340;Name=Msa0841340 |
chr5_4 | mRNA | 17573738 | 17576280 | 17573738 | ID=Msa0841340-mRNA-1;Parent=Msa0841340;Name=Msa0841340-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|1|1|0.66|3|0|83 |
chr5_4 | exon | 17576167 | 17576280 | 17576167 | ID=Msa0841340-mRNA-1:exon:7473;Parent=Msa0841340-mRNA-1 |
chr5_4 | exon | 17576036 | 17576083 | 17576036 | ID=Msa0841340-mRNA-1:exon:7472;Parent=Msa0841340-mRNA-1 |
chr5_4 | exon | 17573738 | 17573824 | 17573738 | ID=Msa0841340-mRNA-1:exon:7471;Parent=Msa0841340-mRNA-1 |
chr5_4 | CDS | 17576167 | 17576280 | 17576167 | ID=Msa0841340-mRNA-1:cds;Parent=Msa0841340-mRNA-1 |
chr5_4 | CDS | 17576036 | 17576083 | 17576036 | ID=Msa0841340-mRNA-1:cds;Parent=Msa0841340-mRNA-1 |
chr5_4 | CDS | 17573738 | 17573824 | 17573738 | ID=Msa0841340-mRNA-1:cds;Parent=Msa0841340-mRNA-1 |
Gene Sequence |
Protein sequence |