AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1435270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1435270 MtrunA17_Chr4g0054731 84.634 410 34 4 1 381 316 725 0.0 628
Msa1435270 MtrunA17_Chr4g0064071 70.115 174 7 2 1 166 53 189 2.79e-70 221
Msa1435270 MtrunA17_Chr2g0286891 34.857 350 182 9 74 379 519 866 1.03e-47 174
Msa1435270 MtrunA17_Chr1g0196471 27.714 350 183 12 75 380 395 718 1.32e-19 90.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1435270 AT2G35330.2 49.392 411 168 10 2 379 294 697 9.33e-100 311
Msa1435270 AT2G35330.1 49.392 411 168 10 2 379 321 724 1.46e-99 312
Msa1435270 AT1G32530.1 47.229 415 169 13 2 379 296 697 3.33e-89 284
Msa1435270 AT4G03000.1 33.807 352 181 11 75 381 458 802 8.11e-38 145
Msa1435270 AT4G03000.2 33.807 352 181 11 75 381 458 802 8.11e-38 145
Msa1435270 AT1G03365.1 34.018 341 169 10 75 379 488 808 5.96e-36 140
Msa1435270 AT1G03365.2 34.018 341 169 10 75 379 488 808 5.96e-36 140
Msa1435270 AT4G03000.4 33.333 180 100 4 75 234 458 637 2.45e-14 75.1
Msa1435270 AT4G03000.6 33.333 180 100 4 75 234 458 637 2.45e-14 75.1
Msa1435270 AT4G03000.5 33.149 181 101 4 75 235 458 638 2.53e-14 75.1
Msa1435270 AT4G03000.3 33.149 181 101 4 75 235 458 638 2.82e-14 75.1

Find 100 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTCCCTTTCTTCAATTTC+TGG 0.004804 tig0027682:-54471 None:intergenic
TTGGATTCTCCGGTTGTATC+TGG 0.155255 tig0027682:+54157 Msa1435270:CDS
CGACTCTGATGCACTTAATT+TGG 0.180809 tig0027682:-54638 None:intergenic
CTTGAATCTTGATGAAAATT+TGG 0.183926 tig0027682:+54267 Msa1435270:CDS
CAGATCGAACAGATGCTTTA+AGG 0.184682 tig0027682:-56862 None:intergenic
CAACAGAGAATCCGTGTATT+TGG 0.202063 tig0027682:+57152 Msa1435270:CDS
TGCTAAGCTGCTTCTGGATT+TGG 0.237221 tig0027682:+56955 Msa1435270:CDS
ATCCTTAATTACAGGCTAAA+TGG 0.256016 tig0027682:+56664 Msa1435270:intron
ATTTCATCAGATAAAGGATT+TGG 0.274722 tig0027682:+54333 Msa1435270:intron
CACGGATTCTCTGTTGGATT+TGG 0.278039 tig0027682:-57145 None:intergenic
GACAATTGCTAAGCTGCTTC+TGG 0.282396 tig0027682:+56949 Msa1435270:CDS
CTTTGATGGGTGAAGTATTT+TGG 0.282543 tig0027682:-56898 None:intergenic
TTTCCCTTTCTTCAATTTCT+GGG 0.295767 tig0027682:-54470 None:intergenic
TCGTAGTGCTGTGTCGAATT+TGG 0.296261 tig0027682:+54138 Msa1435270:CDS
AACAGAGAATCCGTGTATTT+GGG 0.305584 tig0027682:+57153 Msa1435270:CDS
TTAGCAATTGTCTCTCTTTG+AGG 0.339808 tig0027682:-56938 None:intergenic
TGTACCCTCAAAGTCTTTGA+TGG 0.348726 tig0027682:-56912 None:intergenic
CCCCTTCGCCTGCAATTGCT+TGG 0.358244 tig0027682:-54098 None:intergenic
GGCTTATCAGAAAGCATTGC+AGG 0.365464 tig0027682:+54384 Msa1435270:CDS
ATCTGATTCAGCTGCTTCCT+TGG 0.367941 tig0027682:-56745 None:intergenic
TTTGAAAGAGAAGATATTAG+AGG 0.370810 tig0027682:+54761 Msa1435270:CDS
CATCTCCGAGAGTCTCTTCA+TGG 0.375871 tig0027682:-54512 None:intergenic
AAGGGGAAGGCCAATGTTCC+TGG 0.377379 tig0027682:+54115 Msa1435270:CDS
AGCCCATTCTTTCCGCTCCT+TGG 0.380485 tig0027682:-54365 None:intergenic
TGGATTCTCCGGTTGTATCT+GGG 0.386567 tig0027682:+54158 Msa1435270:CDS
GAAATTGAAGAAAGGGAAAC+AGG 0.404324 tig0027682:+54474 Msa1435270:CDS
TGATGAAAATTTGGAGTTTG+TGG 0.423422 tig0027682:+54276 Msa1435270:CDS
CTGTTGGATTTGGACGGACT+CGG 0.425733 tig0027682:-57135 None:intergenic
CAGCTGAATCAGATAATAAG+AGG 0.427063 tig0027682:+56754 Msa1435270:CDS
CTTGAAGAAACTTCTAGCTT+GGG 0.427350 tig0027682:+54702 Msa1435270:CDS
AGCAAACACCAAGCAATTGC+AGG 0.433045 tig0027682:+54090 Msa1435270:CDS
ACTTGAAGAAACTTCTAGCT+TGG 0.439554 tig0027682:+54701 Msa1435270:CDS
CAAATACACGGATTCTCTGT+TGG 0.455039 tig0027682:-57151 None:intergenic
TTCACCCATCAAAGACTTTG+AGG 0.458864 tig0027682:+56907 Msa1435270:CDS
TGACTGAGCTCAAAACATTA+CGG 0.460683 tig0027682:+54431 Msa1435270:CDS
TGCATTTAGCACACATGACT+TGG 0.467599 tig0027682:-57069 None:intergenic
GGTCAAGTGGACCGTGCAAA+TGG 0.472634 tig0027682:+54559 Msa1435270:CDS
GATTCTCTGTTGGATTTGGA+CGG 0.475779 tig0027682:-57141 None:intergenic
AGGCCAAGGAGCGGAAAGAA+TGG 0.476091 tig0027682:+54362 Msa1435270:CDS
CTCTGATGCACTTAATTTGG+AGG 0.476899 tig0027682:-54635 None:intergenic
AGACCCAGAAATTGAAGAAA+GGG 0.477258 tig0027682:+54467 Msa1435270:CDS
TCACCCATCAAAGACTTTGA+GGG 0.477605 tig0027682:+56908 Msa1435270:CDS
TAAATGGAAGGAGGAGTTGA+AGG 0.491096 tig0027682:+56680 Msa1435270:CDS
TTGATACGTGTGGACACTCT+CGG 0.491280 tig0027682:+54194 Msa1435270:CDS
AATGTTGCCATGTTTGCTGC+TGG 0.494753 tig0027682:+54061 None:intergenic
ACAGAAAGCTAAGCTGCAAA+AGG 0.502215 tig0027682:+54728 Msa1435270:CDS
GAGACCCAGAAATTGAAGAA+AGG 0.503278 tig0027682:+54466 Msa1435270:CDS
CAGATAATAAGAGGGGTTTG+AGG 0.505425 tig0027682:+56763 Msa1435270:CDS
GCACCGAGTTCACAGCCTCT+TGG 0.507080 tig0027682:-54228 None:intergenic
GGCCAAGGAGCGGAAAGAAT+GGG 0.512400 tig0027682:+54363 Msa1435270:CDS
TGCTGAAATCAGAGCAGAGA+TGG 0.515753 tig0027682:+54609 Msa1435270:intron
GTACCCTCAAAGTCTTTGAT+GGG 0.516395 tig0027682:-56911 None:intergenic
ACCAAGCAATTGCAGGCGAA+GGG 0.521306 tig0027682:+54097 Msa1435270:CDS
GTTTCAGCCCCAGATACAAC+CGG 0.528436 tig0027682:-54166 None:intergenic
AAATTTGGAGTTTGTGGCTG+AGG 0.529000 tig0027682:+54282 Msa1435270:CDS
TGTGTCGAATTTGGATTCTC+CGG 0.531438 tig0027682:+54147 Msa1435270:CDS
CATGAAGAGACTCTCGGAGA+TGG 0.532852 tig0027682:+54513 Msa1435270:CDS
TGATACGTGTGGACACTCTC+GGG 0.533853 tig0027682:+54195 Msa1435270:CDS
TTCTCACAGCTCCATTTGCA+CGG 0.534333 tig0027682:-54570 None:intergenic
CACCAAGCAATTGCAGGCGA+AGG 0.537169 tig0027682:+54096 Msa1435270:CDS
GCAATTGCAGGCGAAGGGGA+AGG 0.538678 tig0027682:+54102 Msa1435270:CDS
AGTGATGAGTACGGGAAGAA+TGG 0.541897 tig0027682:+57091 Msa1435270:CDS
GAAGGCTCAAGAAGATGCCT+TGG 0.547605 tig0027682:+56698 Msa1435270:CDS
GATGGAGAATGCTTTGAGAA+AGG 0.547829 tig0027682:+54531 Msa1435270:CDS
GGATTCTCCGGTTGTATCTG+GGG 0.550596 tig0027682:+54159 Msa1435270:CDS
AGAATGCATTATATGTATGA+AGG 0.554862 tig0027682:+57012 Msa1435270:CDS
TGTATCTGGGGCTGAAACCA+CGG 0.555470 tig0027682:+54171 Msa1435270:CDS
TCTAAAACCAGCAGCAAACA+TGG 0.556498 tig0027682:-54068 None:intergenic
TGAAGAGGAGCGCCGTTCCA+AGG 0.558816 tig0027682:+56728 Msa1435270:CDS
CACATGACTTGGTGAGCACA+CGG 0.563461 tig0027682:-57058 None:intergenic
TGCCTTGGCACTCGTTGAAG+AGG 0.564467 tig0027682:+56713 Msa1435270:CDS
CTCCTCTTCAACGAGTGCCA+AGG 0.565852 tig0027682:-56715 None:intergenic
TAACCAAGAGGCTGTGAACT+CGG 0.574321 tig0027682:+54225 Msa1435270:CDS
ATTCAGCTGCTTCCTTGGAA+CGG 0.574952 tig0027682:-56740 None:intergenic
TTAATTACAGGCTAAATGGA+AGG 0.576922 tig0027682:+56668 Msa1435270:intron
AGCTGAATCAGATAATAAGA+GGG 0.581693 tig0027682:+56755 Msa1435270:CDS
GCTAAATGCAGTGATGAGTA+CGG 0.582217 tig0027682:+57082 Msa1435270:CDS
GAGAAAGGCTAGTGGTCAAG+TGG 0.583903 tig0027682:+54546 Msa1435270:CDS
AGCACTACGACCAGGAACAT+TGG 0.589300 tig0027682:-54125 None:intergenic
TGAGCTCAAAACATTACGGA+TGG 0.602903 tig0027682:+54435 Msa1435270:CDS
TTCGACACAGCACTACGACC+AGG 0.603889 tig0027682:-54133 None:intergenic
GAAAGGGAAACAGGCACTTG+AGG 0.609973 tig0027682:+54483 Msa1435270:CDS
CTAAATGCAGTGATGAGTAC+GGG 0.613638 tig0027682:+57083 Msa1435270:CDS
CAAATTAAGTGCATCAGAGT+CGG 0.614461 tig0027682:+54639 Msa1435270:CDS
CCAAGCAATTGCAGGCGAAG+GGG 0.618090 tig0027682:+54098 Msa1435270:CDS
TGAGTACGGGAAGAATGGTA+AGG 0.622531 tig0027682:+57096 Msa1435270:CDS
ACGAGCATGCCCCAAATACA+CGG 0.623089 tig0027682:-57163 None:intergenic
CACAACCATGAAGAGACTCT+CGG 0.624070 tig0027682:+54507 Msa1435270:CDS
ACAGAGAATCCGTGTATTTG+GGG 0.627894 tig0027682:+57154 Msa1435270:CDS
TTTGGACGGACTCGGCAGCA+AGG 0.632244 tig0027682:-57127 None:intergenic
TGAAATCAGAGCAGAGATGG+AGG 0.635617 tig0027682:+54612 Msa1435270:intron
GTCTGCTTAGATCATCCTTG+TGG 0.636940 tig0027682:-56820 None:intergenic
ATTAGATTTCCAGCGCCACA+AGG 0.640698 tig0027682:+56805 Msa1435270:intron
GTTTGTGGCTGAGGATCAGA+AGG 0.647016 tig0027682:+54291 Msa1435270:CDS
ATTACAGGCTAAATGGAAGG+AGG 0.652771 tig0027682:+56671 Msa1435270:intron
GAAACCACGGTTGATACGTG+TGG 0.654330 tig0027682:+54184 Msa1435270:CDS
AGCACACGGCAAGAAAACAA+CGG 0.693474 tig0027682:-57044 None:intergenic
GCTGAATCAGATAATAAGAG+GGG 0.699454 tig0027682:+56756 Msa1435270:CDS
TCGGGTTGTTGATAACCAAG+AGG 0.705979 tig0027682:+54213 Msa1435270:CDS
AATGCTTTGAGAAAGGCTAG+TGG 0.716247 tig0027682:+54538 Msa1435270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATAAATAAAATAATAA+GGG - tig0027682:54847-54866 None:intergenic 0.0%
!! TATATATAAATAAAATAATA+AGG - tig0027682:54848-54867 None:intergenic 0.0%
!! ATTTGTAATATACACATAAT+TGG + tig0027682:55686-55705 Msa1435270:intron 15.0%
!! GAATATCAAAATATTTAGAA+GGG - tig0027682:56194-56213 None:intergenic 15.0%
!! AGAATATCAAAATATTTAGA+AGG - tig0027682:56195-56214 None:intergenic 15.0%
!!! AGGTATTTTCTTATTAATAA+AGG + tig0027682:56335-56354 Msa1435270:intron 15.0%
!!! CAAATTATTGTTTTTCTTTT+TGG - tig0027682:56617-56636 None:intergenic 15.0%
!!! TGAAACAAGTAATTTTCTTT+GGG - tig0027682:55135-55154 None:intergenic 20.0%
!!! TTGAAACAAGTAATTTTCTT+TGG - tig0027682:55136-55155 None:intergenic 20.0%
!! TAATTGGTATTTGATACTAA+AGG + tig0027682:55702-55721 Msa1435270:intron 20.0%
!! TGTTAGATACAAAAACAAAT+AGG - tig0027682:55854-55873 None:intergenic 20.0%
!!! TATTTGTTTTTGTATCTAAC+AGG + tig0027682:55853-55872 Msa1435270:intron 20.0%
!!! CACATGACTTATTTTTAAAA+TGG + tig0027682:56088-56107 Msa1435270:intron 20.0%
!!! ATATCACTTTTTAGTGTATT+TGG + tig0027682:56220-56239 Msa1435270:intron 20.0%
!! ATACCTATAGAATATAAGTT+AGG - tig0027682:56321-56340 None:intergenic 20.0%
!! TTTATTAATCAGTACCATTA+GGG - tig0027682:56393-56412 None:intergenic 20.0%
!! ATTTATTAATCAGTACCATT+AGG - tig0027682:56394-56413 None:intergenic 20.0%
!! ATTTGAAAGATACGTATTAT+TGG - tig0027682:56565-56584 None:intergenic 20.0%
!! TAAGGATTATGCAAAATAAA+TGG - tig0027682:56651-56670 None:intergenic 20.0%
! CTTGAATCTTGATGAAAATT+TGG + tig0027682:54267-54286 Msa1435270:CDS 25.0%
! GAGTATATTTCATCAGATAA+AGG + tig0027682:54327-54346 Msa1435270:intron 25.0%
! ATTTCATCAGATAAAGGATT+TGG + tig0027682:54333-54352 Msa1435270:intron 25.0%
! TTTGAAAGAGAAGATATTAG+AGG + tig0027682:54761-54780 Msa1435270:CDS 25.0%
!! TGATATTTTCTGTTCCTTTT+TGG - tig0027682:54898-54917 None:intergenic 25.0%
! CATAGAATGAGTTTATTGAT+CGG + tig0027682:54932-54951 Msa1435270:intron 25.0%
! TGAACTTTACATGTAGTTTA+CGG + tig0027682:55040-55059 Msa1435270:intron 25.0%
!! AATTGATCGTTTTGTCATAA+AGG + tig0027682:55213-55232 Msa1435270:intron 25.0%
!! ATTGATCGTTTTGTCATAAA+GGG + tig0027682:55214-55233 Msa1435270:intron 25.0%
! TCATTGAATGCATATCTAAT+TGG + tig0027682:55245-55264 Msa1435270:intron 25.0%
! CATTGAATGCATATCTAATT+GGG + tig0027682:55246-55265 Msa1435270:intron 25.0%
!!! AAGTATTGACAACAAAGATA+CGG - tig0027682:55523-55542 None:intergenic 25.0%
!! AACTCAAGTATTTAAAGTTC+AGG - tig0027682:56160-56179 None:intergenic 25.0%
! TATCAAAATATTTAGAAGGG+AGG - tig0027682:56191-56210 None:intergenic 25.0%
!! ATATTCATGGGTGTTTATTT+TGG + tig0027682:56250-56269 Msa1435270:intron 25.0%
!!! AGCAAACAAGTTTTTTCATA+TGG - tig0027682:56279-56298 None:intergenic 25.0%
! GATCCTAACTTATATTCTAT+AGG + tig0027682:56315-56334 Msa1435270:intron 25.0%
! AGTCAACAAAAAGAAAATTC+AGG - tig0027682:56500-56519 None:intergenic 25.0%
! TTTGCATAATCCTTAATTAC+AGG + tig0027682:56656-56675 Msa1435270:intron 25.0%
! AGAATGCATTATATGTATGA+AGG + tig0027682:57012-57031 Msa1435270:CDS 25.0%
! TGATGAAAATTTGGAGTTTG+TGG + tig0027682:54276-54295 Msa1435270:CDS 30.0%
GATAAAGGATTTGGAAAAAC+AGG + tig0027682:54342-54361 Msa1435270:intron 30.0%
TTTCCCTTTCTTCAATTTCT+GGG - tig0027682:54473-54492 None:intergenic 30.0%
! TATTTTCTGTTCCTTTTTGG+TGG - tig0027682:54895-54914 None:intergenic 30.0%
AAAATGAGTCACACAGATTA+TGG - tig0027682:54999-55018 None:intergenic 30.0%
TTTGCACATTGAATTCCATT+TGG + tig0027682:55016-55035 Msa1435270:intron 30.0%
ACATGTAAAGTTCAACCAAA+TGG - tig0027682:55034-55053 None:intergenic 30.0%
TTCAAAATCAGACATCAACA+TGG + tig0027682:55151-55170 Msa1435270:intron 30.0%
AAATTACCAGTATGCATCAA+AGG - tig0027682:55360-55379 None:intergenic 30.0%
GCACACTAATTCAAATTCTA+TGG + tig0027682:55476-55495 Msa1435270:intron 30.0%
! TTAGCAGCTGTATCATATTT+TGG - tig0027682:55610-55629 None:intergenic 30.0%
ATTCACATTGCATCTATCTT+TGG - tig0027682:55657-55676 None:intergenic 30.0%
TCCATGCAATTGTAATCTTA+TGG + tig0027682:55828-55847 Msa1435270:intron 30.0%
! TTTTTGTATCTAACAGGTAG+AGG + tig0027682:55859-55878 Msa1435270:intron 30.0%
ACTGTACAATAGCTATTTGA+AGG + tig0027682:56038-56057 Msa1435270:intron 30.0%
! TATTTAAAGTTCAGGTCCTA+CGG - tig0027682:56152-56171 None:intergenic 30.0%
ATCATTGCTAACAAAATCAC+AGG - tig0027682:56530-56549 None:intergenic 30.0%
ATCCTTAATTACAGGCTAAA+TGG + tig0027682:56664-56683 Msa1435270:intron 30.0%
TTCCATTTAGCCTGTAATTA+AGG - tig0027682:56669-56688 None:intergenic 30.0%
TTAATTACAGGCTAAATGGA+AGG + tig0027682:56668-56687 Msa1435270:intron 30.0%
AGCTGAATCAGATAATAAGA+GGG + tig0027682:56755-56774 Msa1435270:CDS 30.0%
TGACTGAGCTCAAAACATTA+CGG + tig0027682:54431-54450 Msa1435270:CDS 35.0%
AGACCCAGAAATTGAAGAAA+GGG + tig0027682:54467-54486 Msa1435270:CDS 35.0%
GTTTCCCTTTCTTCAATTTC+TGG - tig0027682:54474-54493 None:intergenic 35.0%
GAAATTGAAGAAAGGGAAAC+AGG + tig0027682:54474-54493 Msa1435270:CDS 35.0%
CAAATTAAGTGCATCAGAGT+CGG + tig0027682:54639-54658 Msa1435270:CDS 35.0%
! ACTTGAAGAAACTTCTAGCT+TGG + tig0027682:54701-54720 Msa1435270:CDS 35.0%
!! CTTGAAGAAACTTCTAGCTT+GGG + tig0027682:54702-54721 Msa1435270:CDS 35.0%
AAACTGTGTCACACTAGTAT+AGG - tig0027682:55177-55196 None:intergenic 35.0%
AAGGCACGAAAAAGAAGAAA+AGG - tig0027682:55341-55360 None:intergenic 35.0%
AACTGAGCCATTGTTTCATA+CGG + tig0027682:55414-55433 Msa1435270:intron 35.0%
TTATGTGCCGTATGAAACAA+TGG - tig0027682:55424-55443 None:intergenic 35.0%
TTGAAGTTTGTGTCAAGACA+TGG + tig0027682:55444-55463 Msa1435270:intron 35.0%
TGAAGTTTGTGTCAAGACAT+GGG + tig0027682:55445-55464 Msa1435270:intron 35.0%
! TGCATCTATCTTTGGTGTAA+TGG - tig0027682:55649-55668 None:intergenic 35.0%
CTCAAGTACTTCTTGATTCT+CGG + tig0027682:55773-55792 Msa1435270:intron 35.0%
AGATTACAATTGCATGGAAG+AGG - tig0027682:55826-55845 None:intergenic 35.0%
GCCATAAGATTACAATTGCA+TGG - tig0027682:55832-55851 None:intergenic 35.0%
ATTTCCCTTATAGGGAAACT+AGG - tig0027682:55994-56013 None:intergenic 35.0%
TTTCCCTATAAGGGAAATAG+CGG + tig0027682:55996-56015 Msa1435270:intron 35.0%
ATTTGGTTGCTGCATATTCA+TGG + tig0027682:56237-56256 Msa1435270:intron 35.0%
TTTGGTTGCTGCATATTCAT+GGG + tig0027682:56238-56257 Msa1435270:intron 35.0%
CAGCTGAATCAGATAATAAG+AGG + tig0027682:56754-56773 Msa1435270:CDS 35.0%
GCTGAATCAGATAATAAGAG+GGG + tig0027682:56756-56775 Msa1435270:CDS 35.0%
!! CTTTGATGGGTGAAGTATTT+TGG - tig0027682:56901-56920 None:intergenic 35.0%
TTAGCAATTGTCTCTCTTTG+AGG - tig0027682:56941-56960 None:intergenic 35.0%
AACAGAGAATCCGTGTATTT+GGG + tig0027682:57153-57172 Msa1435270:CDS 35.0%
TGTGTCGAATTTGGATTCTC+CGG + tig0027682:54147-54166 Msa1435270:CDS 40.0%
! AAATTTGGAGTTTGTGGCTG+AGG + tig0027682:54282-54301 Msa1435270:CDS 40.0%
TGAGCTCAAAACATTACGGA+TGG + tig0027682:54435-54454 Msa1435270:CDS 40.0%
GAGACCCAGAAATTGAAGAA+AGG + tig0027682:54466-54485 Msa1435270:CDS 40.0%
!! GATGGAGAATGCTTTGAGAA+AGG + tig0027682:54531-54550 Msa1435270:CDS 40.0%
!! AATGCTTTGAGAAAGGCTAG+TGG + tig0027682:54538-54557 Msa1435270:CDS 40.0%
! CTCTGATGCACTTAATTTGG+AGG - tig0027682:54638-54657 None:intergenic 40.0%
CGACTCTGATGCACTTAATT+TGG - tig0027682:54641-54660 None:intergenic 40.0%
ACAGAAAGCTAAGCTGCAAA+AGG + tig0027682:54728-54747 Msa1435270:CDS 40.0%
GTTTACGGCTTGAAACAAGT+AGG + tig0027682:55055-55074 Msa1435270:intron 40.0%
ACAAGTAGGAGTTTAAGTCC+TGG + tig0027682:55069-55088 Msa1435270:intron 40.0%
CAAGTAGGAGTTTAAGTCCT+GGG + tig0027682:55070-55089 Msa1435270:intron 40.0%
ACTAATCCCTGTTTGGGAAT+TGG - tig0027682:55101-55120 None:intergenic 40.0%
! ATTTTCTTTGGGTGAGACTG+TGG - tig0027682:55124-55143 None:intergenic 40.0%
TGAACCATGTATGCATAGCT+TGG + tig0027682:55385-55404 Msa1435270:intron 40.0%
GAAGTTTGTGTCAAGACATG+GGG + tig0027682:55446-55465 Msa1435270:intron 40.0%
AAGTTTGTGTCAAGACATGG+GGG + tig0027682:55447-55466 Msa1435270:intron 40.0%
CATTCTGCCATGAACTATTC+TGG - tig0027682:55569-55588 None:intergenic 40.0%
GAATAGTTCATGGCAGAATG+TGG + tig0027682:55569-55588 Msa1435270:intron 40.0%
ACTGTCCTAGTTTCCCTATA+AGG + tig0027682:55986-56005 Msa1435270:intron 40.0%
CTGTCCTAGTTTCCCTATAA+GGG + tig0027682:55987-56006 Msa1435270:intron 40.0%
ATTGCTACTATGTTCACCGT+AGG + tig0027682:56133-56152 Msa1435270:intron 40.0%
AGTGCTAATCAATGCCCTAA+TGG + tig0027682:56376-56395 Msa1435270:intron 40.0%
ATTACAGGCTAAATGGAAGG+AGG + tig0027682:56671-56690 Msa1435270:intron 40.0%
TAAATGGAAGGAGGAGTTGA+AGG + tig0027682:56680-56699 Msa1435270:CDS 40.0%
CAGATAATAAGAGGGGTTTG+AGG + tig0027682:56763-56782 Msa1435270:CDS 40.0%
CAGATCGAACAGATGCTTTA+AGG - tig0027682:56865-56884 None:intergenic 40.0%
TTCACCCATCAAAGACTTTG+AGG + tig0027682:56907-56926 Msa1435270:CDS 40.0%
TCACCCATCAAAGACTTTGA+GGG + tig0027682:56908-56927 Msa1435270:CDS 40.0%
GTACCCTCAAAGTCTTTGAT+GGG - tig0027682:56914-56933 None:intergenic 40.0%
TGTACCCTCAAAGTCTTTGA+TGG - tig0027682:56915-56934 None:intergenic 40.0%
TGCATTTAGCACACATGACT+TGG - tig0027682:57072-57091 None:intergenic 40.0%
GCTAAATGCAGTGATGAGTA+CGG + tig0027682:57082-57101 Msa1435270:CDS 40.0%
CTAAATGCAGTGATGAGTAC+GGG + tig0027682:57083-57102 Msa1435270:CDS 40.0%
GATTCTCTGTTGGATTTGGA+CGG - tig0027682:57144-57163 None:intergenic 40.0%
CAAATACACGGATTCTCTGT+TGG - tig0027682:57154-57173 None:intergenic 40.0%
CAACAGAGAATCCGTGTATT+TGG + tig0027682:57152-57171 Msa1435270:CDS 40.0%
ACAGAGAATCCGTGTATTTG+GGG + tig0027682:57154-57173 Msa1435270:CDS 40.0%
AGCAAACACCAAGCAATTGC+AGG + tig0027682:54090-54109 Msa1435270:CDS 45.0%
TCGTAGTGCTGTGTCGAATT+TGG + tig0027682:54138-54157 Msa1435270:CDS 45.0%
TTGGATTCTCCGGTTGTATC+TGG + tig0027682:54157-54176 Msa1435270:CDS 45.0%
TGGATTCTCCGGTTGTATCT+GGG + tig0027682:54158-54177 Msa1435270:CDS 45.0%
TTGATACGTGTGGACACTCT+CGG + tig0027682:54194-54213 Msa1435270:CDS 45.0%
!! TCGGGTTGTTGATAACCAAG+AGG + tig0027682:54213-54232 Msa1435270:CDS 45.0%
TAACCAAGAGGCTGTGAACT+CGG + tig0027682:54225-54244 Msa1435270:CDS 45.0%
GGATTTGGAAAAACAGGCCA+AGG + tig0027682:54348-54367 Msa1435270:CDS 45.0%
!! GGCTTATCAGAAAGCATTGC+AGG + tig0027682:54384-54403 Msa1435270:CDS 45.0%
CACAACCATGAAGAGACTCT+CGG + tig0027682:54507-54526 Msa1435270:CDS 45.0%
TTCTCACAGCTCCATTTGCA+CGG - tig0027682:54573-54592 None:intergenic 45.0%
TGCTGAAATCAGAGCAGAGA+TGG + tig0027682:54609-54628 Msa1435270:intron 45.0%
TGAAATCAGAGCAGAGATGG+AGG + tig0027682:54612-54631 Msa1435270:intron 45.0%
! AGAGAACCTCGGCTTCTTTT+TGG - tig0027682:54818-54837 None:intergenic 45.0%
!! CCTTTTTGGTGGTTTGTGTG+TGG - tig0027682:54884-54903 None:intergenic 45.0%
CCACACACAAACCACCAAAA+AGG + tig0027682:54881-54900 Msa1435270:intron 45.0%
! CTGTGGACTAATCCCTGTTT+GGG - tig0027682:55107-55126 None:intergenic 45.0%
! ACTGTGGACTAATCCCTGTT+TGG - tig0027682:55108-55127 None:intergenic 45.0%
TTCGTGCCTTTGATGCATAC+TGG + tig0027682:55351-55370 Msa1435270:intron 45.0%
GTCTCCAAGCTATGCATACA+TGG - tig0027682:55392-55411 None:intergenic 45.0%
! TGTCAAGACATGGGGGTATA+CGG + tig0027682:55454-55473 Msa1435270:intron 45.0%
GCACACACCAGAATAGTTCA+TGG + tig0027682:55559-55578 Msa1435270:intron 45.0%
GTGTCTTGACTCTTGAGTAC+TGG - tig0027682:55731-55750 None:intergenic 45.0%
CTTGATTCTCGGCTTCTTCT+TGG + tig0027682:55784-55803 Msa1435270:intron 45.0%
AATTCTTTAGCCAATGCCCC+TGG + tig0027682:56441-56460 Msa1435270:intron 45.0%
ATTCTTTAGCCAATGCCCCT+GGG + tig0027682:56442-56461 Msa1435270:intron 45.0%
ATTCAGCTGCTTCCTTGGAA+CGG - tig0027682:56743-56762 None:intergenic 45.0%
ATCTGATTCAGCTGCTTCCT+TGG - tig0027682:56748-56767 None:intergenic 45.0%
ATTAGATTTCCAGCGCCACA+AGG + tig0027682:56805-56824 Msa1435270:intron 45.0%
GTCTGCTTAGATCATCCTTG+TGG - tig0027682:56823-56842 None:intergenic 45.0%
GACAATTGCTAAGCTGCTTC+TGG + tig0027682:56949-56968 Msa1435270:CDS 45.0%
TGCTAAGCTGCTTCTGGATT+TGG + tig0027682:56955-56974 Msa1435270:CDS 45.0%
AGCACACGGCAAGAAAACAA+CGG - tig0027682:57047-57066 None:intergenic 45.0%
AGTGATGAGTACGGGAAGAA+TGG + tig0027682:57091-57110 Msa1435270:CDS 45.0%
TGAGTACGGGAAGAATGGTA+AGG + tig0027682:57096-57115 Msa1435270:CDS 45.0%
CACGGATTCTCTGTTGGATT+TGG - tig0027682:57148-57167 None:intergenic 45.0%
!! TATATAAATAAAATAATAAG+GGG - tig0027682:54846-54865 None:intergenic 5.0%
ACCAAGCAATTGCAGGCGAA+GGG + tig0027682:54097-54116 Msa1435270:CDS 50.0%
AGCACTACGACCAGGAACAT+TGG - tig0027682:54128-54147 None:intergenic 50.0%
GGATTCTCCGGTTGTATCTG+GGG + tig0027682:54159-54178 Msa1435270:CDS 50.0%
GTTTCAGCCCCAGATACAAC+CGG - tig0027682:54169-54188 None:intergenic 50.0%
! TGTATCTGGGGCTGAAACCA+CGG + tig0027682:54171-54190 Msa1435270:CDS 50.0%
! GAAACCACGGTTGATACGTG+TGG + tig0027682:54184-54203 Msa1435270:CDS 50.0%
TGATACGTGTGGACACTCTC+GGG + tig0027682:54195-54214 Msa1435270:CDS 50.0%
GTTTGTGGCTGAGGATCAGA+AGG + tig0027682:54291-54310 Msa1435270:CDS 50.0%
TGGAAAAACAGGCCAAGGAG+CGG + tig0027682:54353-54372 Msa1435270:CDS 50.0%
GAAAGGGAAACAGGCACTTG+AGG + tig0027682:54483-54502 Msa1435270:CDS 50.0%
CATCTCCGAGAGTCTCTTCA+TGG - tig0027682:54515-54534 None:intergenic 50.0%
CATGAAGAGACTCTCGGAGA+TGG + tig0027682:54513-54532 Msa1435270:CDS 50.0%
GAGAAAGGCTAGTGGTCAAG+TGG + tig0027682:54546-54565 Msa1435270:CDS 50.0%
GCCAAGCCAATTCCCAAACA+GGG + tig0027682:55092-55111 Msa1435270:intron 50.0%
TCCCTGTTTGGGAATTGGCT+TGG - tig0027682:55096-55115 None:intergenic 50.0%
! CGGCCGCTATTTCCCTTATA+GGG - tig0027682:56002-56021 None:intergenic 50.0%
CAGTAGCCTGAGCAGAATAG+CGG - tig0027682:56022-56041 None:intergenic 50.0%
TCATGCTAACCAATGCCCAG+GGG - tig0027682:56460-56479 None:intergenic 50.0%
GTCATGCTAACCAATGCCCA+GGG - tig0027682:56461-56480 None:intergenic 50.0%
AGTCATGCTAACCAATGCCC+AGG - tig0027682:56462-56481 None:intergenic 50.0%
GAAGGCTCAAGAAGATGCCT+TGG + tig0027682:56698-56717 Msa1435270:CDS 50.0%
TTAGATCATCCTTGTGGCGC+TGG - tig0027682:56817-56836 None:intergenic 50.0%
!! CACATGACTTGGTGAGCACA+CGG - tig0027682:57061-57080 None:intergenic 50.0%
! CTGTTGGATTTGGACGGACT+CGG - tig0027682:57138-57157 None:intergenic 50.0%
ACGAGCATGCCCCAAATACA+CGG - tig0027682:57166-57185 None:intergenic 50.0%
CACCAAGCAATTGCAGGCGA+AGG + tig0027682:54096-54115 Msa1435270:CDS 55.0%
CCAAGCAATTGCAGGCGAAG+GGG + tig0027682:54098-54117 Msa1435270:CDS 55.0%
AAGGGGAAGGCCAATGTTCC+TGG + tig0027682:54115-54134 Msa1435270:CDS 55.0%
TTCGACACAGCACTACGACC+AGG - tig0027682:54136-54155 None:intergenic 55.0%
GTGTCCACACGTATCAACCG+TGG - tig0027682:54191-54210 None:intergenic 55.0%
AGGCCAAGGAGCGGAAAGAA+TGG + tig0027682:54362-54381 Msa1435270:CDS 55.0%
GGCCAAGGAGCGGAAAGAAT+GGG + tig0027682:54363-54382 Msa1435270:CDS 55.0%
AGCCCATTCTTTCCGCTCCT+TGG - tig0027682:54368-54387 None:intergenic 55.0%
GGTCAAGTGGACCGTGCAAA+TGG + tig0027682:54559-54578 Msa1435270:CDS 55.0%
AAGGGGCGAAGAGAGAACCT+CGG - tig0027682:54829-54848 None:intergenic 55.0%
!! TTTGGGAATTGGCTTGGCCC+AGG - tig0027682:55090-55109 None:intergenic 55.0%
GGCCAAGCCAATTCCCAAAC+AGG + tig0027682:55091-55110 Msa1435270:intron 55.0%
! GCGGCCGCTATTTCCCTTAT+AGG - tig0027682:56003-56022 None:intergenic 55.0%
! TAACCAATGCCCAGGGGCAT+TGG - tig0027682:56454-56473 None:intergenic 55.0%
TGCCTTGGCACTCGTTGAAG+AGG + tig0027682:56713-56732 Msa1435270:CDS 55.0%
CTCCTCTTCAACGAGTGCCA+AGG - tig0027682:56718-56737 None:intergenic 55.0%
CCCCTTCGCCTGCAATTGCT+TGG - tig0027682:54101-54120 None:intergenic 60.0%
GCAATTGCAGGCGAAGGGGA+AGG + tig0027682:54102-54121 Msa1435270:CDS 60.0%
GCACCGAGTTCACAGCCTCT+TGG - tig0027682:54231-54250 None:intergenic 60.0%
GCAGCGCCAAAAAGAAGCCG+AGG + tig0027682:54809-54828 Msa1435270:CDS 60.0%
TAGCGGCCGCTATTCTGCTC+AGG + tig0027682:56013-56032 Msa1435270:intron 60.0%
TAGCCAATGCCCCTGGGCAT+TGG + tig0027682:56448-56467 Msa1435270:intron 60.0%
!! TGAAGAGGAGCGCCGTTCCA+AGG + tig0027682:56728-56747 Msa1435270:CDS 60.0%
! TTTGGACGGACTCGGCAGCA+AGG - tig0027682:57130-57149 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0027682 gene 54070 57192 54070 ID=Msa1435270;Name=Msa1435270
tig0027682 mRNA 54070 57192 54070 ID=Msa1435270-mRNA-1;Parent=Msa1435270;Name=Msa1435270-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0.25|0|1|0.5|0.4|5|0|396
tig0027682 exon 54070 54318 54070 ID=Msa1435270-mRNA-1:exon:9559;Parent=Msa1435270-mRNA-1
tig0027682 exon 54343 54585 54343 ID=Msa1435270-mRNA-1:exon:9560;Parent=Msa1435270-mRNA-1
tig0027682 exon 54621 54830 54621 ID=Msa1435270-mRNA-1:exon:9561;Parent=Msa1435270-mRNA-1
tig0027682 exon 56678 56791 56678 ID=Msa1435270-mRNA-1:exon:9562;Parent=Msa1435270-mRNA-1
tig0027682 exon 56818 57192 56818 ID=Msa1435270-mRNA-1:exon:9563;Parent=Msa1435270-mRNA-1
tig0027682 CDS 54070 54318 54070 ID=Msa1435270-mRNA-1:cds;Parent=Msa1435270-mRNA-1
tig0027682 CDS 54343 54585 54343 ID=Msa1435270-mRNA-1:cds;Parent=Msa1435270-mRNA-1
tig0027682 CDS 54621 54830 54621 ID=Msa1435270-mRNA-1:cds;Parent=Msa1435270-mRNA-1
tig0027682 CDS 56678 56791 56678 ID=Msa1435270-mRNA-1:cds;Parent=Msa1435270-mRNA-1
tig0027682 CDS 56818 57192 56818 ID=Msa1435270-mRNA-1:cds;Parent=Msa1435270-mRNA-1
Gene Sequence

>Msa1435270

ATGTTTGCTGCTGGTTTTAGAGCAAACACCAAGCAATTGCAGGCGAAGGGGAAGGCCAATGTTCCTGGTCGTAGTGCTGTGTCGAATTTGGATTCTCCGGTTGTATCTGGGGCTGAAACCACGGTTGATACGTGTGGACACTCTCGGGTTGTTGATAACCAAGAGGCTGTGAACTCGGTGCTGAGTAAATTTCGTGACTTGAATCTTGATGAAAATTTGGAGTTTGTGGCTGAGGATCAGAAGGATGAAATAAAGGATTTGGAAAAACAGGCCAAGGAGCGGAAAGAATGGGCTTATCAGAAAGCATTGCAGGCTGCGAAGAAGCTAAGCAGTGATTTGACTGAGCTCAAAACATTACGGATGGATAGAGAAGAGACCCAGAAATTGAAGAAAGGGAAACAGGCACTTGAGGACACAACCATGAAGAGACTCTCGGAGATGGAGAATGCTTTGAGAAAGGCTAGTGGTCAAGTGGACCGTGCAAATGGAGCTAGCAGAGATGGAGGCCTCCAAATTAAGTGCATCAGAGTCGGTGACAGCTTGCTTAGAAGTTGCAAAAAAAGAGAAAAAGTACTTGAAGAAACTTCTAGCTTGGGAAAACAGAAAGCTAAGCTGCAAAAGGAGATTTCTGATTTGAAAGAGAAGATATTAGAGGATCGAGAAGTGTCAGCTCAGAATAAGCAGCGCCAAAAAGAAGCCGAGGCTAAATGGAAGGAGGAGTTGAAGGCTCAAGAAGATGCCTTGGCACTCGTTGAAGAGGAGCGCCGTTCCAAGGAAGCAGCTGAATCAGATAATAAGAGGGGTTTGAGGCTTTGCCGCCACAAGGATGATCTAAGCAGACTTGAGAATGATCTTTCGCGCCTTAAAGCATCTGTTCGATCTGCTGCATTGCATCACCAAAATACTTCACCCATCAAAGACTTTGAGGGTACAAAGCCTCAAAGAGAGACAATTGCTAAGCTGCTTCTGGATTTGGATGATTTATCAGAAAGTGAAGCTAATAACAACAGAGAATGCATTATATGTATGAAGGATGAAGTCTCCGTTGTTTTCTTGCCGTGTGCTCACCAAGTCATGTGTGCTAAATGCAGTGATGAGTACGGGAAGAATGGTAAGGCTGCTTGTCCTTGCTGCCGAGTCCGTCCAAATCCAACAGAGAATCCGTGTATTTGGGGCATGCTCGTAGCTTAA

Protein sequence

>Msa1435270

MFAAGFRANTKQLQAKGKANVPGRSAVSNLDSPVVSGAETTVDTCGHSRVVDNQEAVNSVLSKFRDLNLDENLEFVAEDQKDEIKDLEKQAKERKEWAYQKALQAAKKLSSDLTELKTLRMDREETQKLKKGKQALEDTTMKRLSEMENALRKASGQVDRANGASRDGGLQIKCIRVGDSLLRSCKKREKVLEETSSLGKQKAKLQKEISDLKEKILEDREVSAQNKQRQKEAEAKWKEELKAQEDALALVEEERRSKEAAESDNKRGLRLCRHKDDLSRLENDLSRLKASVRSAALHHQNTSPIKDFEGTKPQRETIAKLLLDLDDLSESEANNNRECIICMKDEVSVVFLPCAHQVMCAKCSDEYGKNGKAACPCCRVRPNPTENPCIWGMLVA*