AlfalfaGEDB | Msa0734960

M. sativa cultivar zhongmu-4 / Msa0734960

KEGG: K11091|K11094
GO: GO:0000245 GO:0000354 GO:0000375 GO:0000377 GO:0000398 GO:0001650 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005685 GO:0005686 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0017069 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0030619 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0035613 GO:0035614 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0045292 GO:0046483 GO:0065003 GO:0070013 GO:0071005 GO:0071007 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904
PFAM: PF00076.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0734960	ACJ83293.1	99.130	115	1	0	1	115	1	115	1.60e-77	238

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0734960	sp\|O22922\|RU2B1_ARATH	80.870	115	22	0	1	115	1	115	5.27e-68	207

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0734960	B7FFA3	99.130	115	1	0	1	115	1	115	7.66e-78	238

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001450	Msa0734960	0.817726	2.839808e-52	-8.615850e-47
Msa0003220	Msa0734960	0.858920	5.915770e-63	-8.615850e-47
Msa0003270	Msa0734960	0.843171	1.650661e-58	-8.615850e-47
Msa0003700	Msa0734960	0.819442	1.158847e-52	-8.615850e-47
Msa0003720	Msa0734960	0.818676	1.731324e-52	-8.615850e-47
Msa0004540	Msa0734960	0.822014	2.970669e-53	-8.615850e-47
Msa0007850	Msa0734960	0.800828	1.200274e-48	-8.615850e-47
Msa0008090	Msa0734960	0.843689	1.200501e-58	-8.615850e-47
Msa0008410	Msa0734960	0.839640	1.404304e-57	-8.615850e-47
Msa0009760	Msa0734960	0.820718	5.915338e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0734960	MtrunA17_Chr5g0432171	99.130	115	1	1	115	1	115	2.84e-81	238
Msa0734960	MtrunA17_Chr4g0044291	68.182	110	35	7	116	11	120	4.25e-53	167
Msa0734960	MtrunA17_Chr7g0269411	65.432	81	28	7	87	11	91	5.14e-36	119
Msa0734960	MtrunA17_Chr4g0044321	62.195	82	31	9	90	13	94	7.68e-29	108
Msa0734960	MtrunA17_Chr1g0176901	91.667	48	4	57	104	2	49	1.46e-26	97.8

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0734960	AT2G30260.2	80.870	115	22	1	115	1	115	2.07e-69	206
Msa0734960	AT2G30260.1	80.870	115	22	1	115	1	115	5.36e-69	207
Msa0734960	AT1G06960.5	73.846	130	34	1	130	1	130	4.77e-65	194
Msa0734960	AT1G06960.2	82.524	103	18	1	103	1	103	1.00e-63	192
Msa0734960	AT1G06960.1	82.524	103	18	1	103	1	103	1.25e-62	191
Msa0734960	AT2G47580.1	63.889	108	39	5	112	13	120	2.90e-47	153
Msa0734960	AT1G06960.6	80.882	68	13	36	103	7	74	1.22e-38	127
Msa0734960	AT1G06960.3	80.882	68	13	36	103	7	74	9.98e-38	127

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Find 28 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAGAGAGGATGCTTTC+AGG	0.319590	5_1:-49899429	Msa0734960:exon
AACCAGAGAGGATGCTTTCA+GGG	0.433914	5_1:-49899428	Msa0734960:exon
AAGAGGAGAAAGGTGAAGAA+TGG	0.534630	5_1:-49896635	Msa0734960:CDS
AAGAGGGAAGCTTTGTTCCA+AGG	0.510421	5_1:-49896674	Msa0734960:CDS
AATGAAAAGATCAAGAAAGA+CGG	0.624809	5_1:-49899366	Msa0734960:intron
ACCAGAGAGGATGCTTTCAG+GGG	0.636302	5_1:-49899427	Msa0734960:exon
AGAGGGAAGCTTTGTTCCAA+GGG	0.460175	5_1:-49896673	Msa0734960:CDS
AGATTGTATTGCTAAAGAAG+AGG	0.631624	5_1:-49896691	Msa0734960:CDS
ATGTAAATGGTTTGATTTGG+AGG	0.406769	5_1:+49899399	None:intergenic
ATTGAGATTCTTAATGTAAA+TGG	0.200962	5_1:+49899386	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAAAACATGGGAATGTAAA+TGG	+	chr5_1:49896720-49896739	None:intergenic	30.0%
CGAAAATAAGTCAATCCAAA+CGG	+	chr5_1:49897023-49897042	None:intergenic	30.0%
CAAAAATAAGCCAATCCAAA+TGG	-	chr5_1:49897201-49897220	Msa0734960:intron	30.0%
GCGTATTATGTATGAGAAAA+GGG	-	chr5_1:49897224-49897243	Msa0734960:intron	30.0%
TTGAATTGCCAATCTATTGT+TGG	-	chr5_1:49897311-49897330	Msa0734960:CDS	30.0%
GAGTATATCAGTGTAATACA+TGG	-	chr5_1:49897786-49897805	Msa0734960:intron	30.0%
GAAATGACAACATTAGAGAA+AGG	-	chr5_1:49898068-49898087	Msa0734960:intron	30.0%
TTAATCTTGACGTATGATAG+AGG	-	chr5_1:49898440-49898459	Msa0734960:intron	30.0%
AAAACGTGATAAAACACAAC+AGG	+	chr5_1:49898883-49898902	None:intergenic	30.0%
TAACCAAGAATTCTTACAAG+CGG	+	chr5_1:49899012-49899031	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	49896572	49899495	49896572	ID=Msa0734960;Name=Msa0734960
chr5_1	mRNA	49896572	49899495	49896572	ID=Msa0734960-mRNA-1;Parent=Msa0734960;Name=Msa0734960-mRNA-1;_AED=0.02;_eAED=0.02;_QI=56\|1\|1\|1\|1\|1\|3\|18\|131
chr5_1	exon	49896572	49896739	49896572	ID=Msa0734960-mRNA-1:exon:14096;Parent=Msa0734960-mRNA-1
chr5_1	exon	49897240	49897412	49897240	ID=Msa0734960-mRNA-1:exon:14095;Parent=Msa0734960-mRNA-1
chr5_1	exon	49899367	49899495	49899367	ID=Msa0734960-mRNA-1:exon:14094;Parent=Msa0734960-mRNA-1
chr5_1	five_prime_UTR	49899440	49899495	49899440	ID=Msa0734960-mRNA-1:five_prime_utr;Parent=Msa0734960-mRNA-1
chr5_1	CDS	49899367	49899439	49899367	ID=Msa0734960-mRNA-1:cds;Parent=Msa0734960-mRNA-1
chr5_1	CDS	49897240	49897412	49897240	ID=Msa0734960-mRNA-1:cds;Parent=Msa0734960-mRNA-1
chr5_1	CDS	49896590	49896739	49896590	ID=Msa0734960-mRNA-1:cds;Parent=Msa0734960-mRNA-1
chr5_1	three_prime_UTR	49896572	49896589	49896572	ID=Msa0734960-mRNA-1:three_prime_utr;Parent=Msa0734960-mRNA-1

Gene Sequence

>Msa0734960

ATGCTTTCAGGGGATATACCTCCAAATCAAACCATTTACATTAAGAATCTCAATGAAAAGATCAAGAAAGACGAGTTAAAGAGATCTCTGTATTGCTTATTCTCTCAATATGGAAGGATTTTGGACATTATTGCTCTAAAGACGCCTAAGCTTCGAGGACAGGCATGGGTTTGTTTTAGCGAAGTAACTGCTGCCAGTAATGCAGTGCGACAGATGCAAAACTTCCCATTTTATGAAAAACCTATGAGAATTCAATATGCAAAAACAAAGTCAGATTGTATTGCTAAAGAAGAGGGAAGCTTTGTTCCAAGGGAGAAGAAAAAGAAACAAGAGGAGAAAGGTGAAGAATGGTCATTTATTTTTTCCTTTCAAACCATAATCATCCTCACTTTTTGA

Protein sequence

>Msa0734960

MLSGDIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKGEEWSFIFSFQTIIILTF*