AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0734960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0734960 MtrunA17_Chr5g0432171 99.130 115 1 0 1 115 1 115 2.84e-81 238
Msa0734960 MtrunA17_Chr4g0044291 68.182 110 35 0 7 116 11 120 4.25e-53 167
Msa0734960 MtrunA17_Chr7g0269411 65.432 81 28 0 7 87 11 91 5.14e-36 119
Msa0734960 MtrunA17_Chr4g0044321 62.195 82 31 0 9 90 13 94 7.68e-29 108
Msa0734960 MtrunA17_Chr1g0176901 91.667 48 4 0 57 104 2 49 1.46e-26 97.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0734960 AT2G30260.2 80.870 115 22 0 1 115 1 115 2.07e-69 206
Msa0734960 AT2G30260.1 80.870 115 22 0 1 115 1 115 5.36e-69 207
Msa0734960 AT1G06960.5 73.846 130 34 0 1 130 1 130 4.77e-65 194
Msa0734960 AT1G06960.2 82.524 103 18 0 1 103 1 103 1.00e-63 192
Msa0734960 AT1G06960.1 82.524 103 18 0 1 103 1 103 1.25e-62 191
Msa0734960 AT2G47580.1 63.889 108 39 0 5 112 13 120 2.90e-47 153
Msa0734960 AT1G06960.6 80.882 68 13 0 36 103 7 74 1.22e-38 127
Msa0734960 AT1G06960.3 80.882 68 13 0 36 103 7 74 9.98e-38 127

Find 28 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCAATATGGAAGGATTT+TGG 0.143011 5_1:-49897362 Msa0734960:CDS
ATTGAGATTCTTAATGTAAA+TGG 0.200962 5_1:+49899386 None:intergenic
CATCTGTCGCACTGCATTAC+TGG 0.268948 5_1:+49897270 None:intergenic
TATTGCTTATTCTCTCAATA+TGG 0.294966 5_1:-49897373 Msa0734960:CDS
AAACCAGAGAGGATGCTTTC+AGG 0.319590 5_1:-49899429 Msa0734960:exon
TTAATGTAAATGGTTTGATT+TGG 0.322185 5_1:+49899396 None:intergenic
TGAAAGCATCCTCTCTGGTT+TGG 0.356331 5_1:+49899431 None:intergenic
CCTCTCTGGTTTGGTTCTGA+TGG 0.397079 5_1:+49899440 None:intergenic
ATGTAAATGGTTTGATTTGG+AGG 0.406769 5_1:+49899399 None:intergenic
AACCAGAGAGGATGCTTTCA+GGG 0.433914 5_1:-49899428 Msa0734960:exon
GACGCCTAAGCTTCGAGGAC+AGG 0.460104 5_1:-49897323 Msa0734960:CDS
AGAGGGAAGCTTTGTTCCAA+GGG 0.460175 5_1:-49896673 Msa0734960:CDS
CATGCCTGTCCTCGAAGCTT+AGG 0.475388 5_1:+49897319 None:intergenic
TCCCCTGAAAGCATCCTCTC+TGG 0.487029 5_1:+49899426 None:intergenic
GAGGATGATTATGGTTTGAA+AGG 0.487880 5_1:+49896599 None:intergenic
TCTCGAGTCTCTATCGAGCT+AGG 0.497921 5_1:-49899485 None:intergenic
CTAAAGACGCCTAAGCTTCG+AGG 0.510089 5_1:-49897328 Msa0734960:CDS
AAGAGGGAAGCTTTGTTCCA+AGG 0.510421 5_1:-49896674 Msa0734960:CDS
GCTTATTCTCTCAATATGGA+AGG 0.527328 5_1:-49897369 Msa0734960:CDS
AAGAGGAGAAAGGTGAAGAA+TGG 0.534630 5_1:-49896635 Msa0734960:CDS
CTCGAGTCTCTATCGAGCTA+GGG 0.542893 5_1:-49899484 None:intergenic
TAAGCTTCGAGGACAGGCAT+GGG 0.574433 5_1:-49897317 Msa0734960:CDS
CTAAGCTTCGAGGACAGGCA+TGG 0.581122 5_1:-49897318 Msa0734960:CDS
GATTGTATTGCTAAAGAAGA+GGG 0.592319 5_1:-49896690 Msa0734960:CDS
AATGAAAAGATCAAGAAAGA+CGG 0.624809 5_1:-49899366 Msa0734960:intron
AGATTGTATTGCTAAAGAAG+AGG 0.631624 5_1:-49896691 Msa0734960:CDS
ACCAGAGAGGATGCTTTCAG+GGG 0.636302 5_1:-49899427 Msa0734960:exon
CCATCAGAACCAAACCAGAG+AGG 0.711349 5_1:-49899440 Msa0734960:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTGTTGAATTATTA+GGG - chr5_1:49896871-49896890 Msa0734960:intron 10.0%
!! TTAGTAAATATTTATACATA+AGG + chr5_1:49897897-49897916 None:intergenic 10.0%
!!! TTACTTTTTACTACTTTTTT+AGG - chr5_1:49896759-49896778 Msa0734960:intron 15.0%
!!! GAATTTTTTGTTGAATTATT+AGG - chr5_1:49896870-49896889 Msa0734960:intron 15.0%
!!! AAAATTTAGTTTAATTGAAC+TGG - chr5_1:49896973-49896992 Msa0734960:intron 15.0%
!!! AAATTTAGTTTAATTGAACT+GGG - chr5_1:49896974-49896993 Msa0734960:intron 15.0%
!! TAAAAAGTTAATGAAAATTG+TGG - chr5_1:49897496-49897515 Msa0734960:intron 15.0%
!! AAATAATAATTCAAAAAGTG+AGG + chr5_1:49899468-49899487 None:intergenic 15.0%
!!! TCACTTTTTGAATTATTATT+TGG - chr5_1:49899467-49899486 Msa0734960:five_prime_UTR 15.0%
!!! CACTTTTTGAATTATTATTT+GGG - chr5_1:49899468-49899487 Msa0734960:five_prime_UTR 15.0%
!! TTAATGTAAATGGTTTGATT+TGG + chr5_1:49896652-49896671 None:intergenic 20.0%
!! ATTGAGATTCTTAATGTAAA+TGG + chr5_1:49896662-49896681 None:intergenic 20.0%
!! TAGAAAAGTAAGAAAAACAT+GGG + chr5_1:49896731-49896750 None:intergenic 20.0%
!!! TTATGGTTAGAAATTTTAAC+TGG - chr5_1:49896843-49896862 Msa0734960:intron 20.0%
!!! TATGGTTAGAAATTTTAACT+GGG - chr5_1:49896844-49896863 Msa0734960:intron 20.0%
!! TAATATAACCAACAATAGAT+TGG + chr5_1:49897322-49897341 None:intergenic 20.0%
!!! AATAAGAACCTTTAATTTGA+TGG - chr5_1:49897532-49897551 Msa0734960:intron 20.0%
!! ATATAACAGATCCTATATAT+AGG - chr5_1:49897707-49897726 Msa0734960:intron 20.0%
!! TATAACAGATCCTATATATA+GGG - chr5_1:49897708-49897727 Msa0734960:intron 20.0%
!!! ATCATTGTATAACTTTTTAC+CGG + chr5_1:49897745-49897764 None:intergenic 20.0%
!! TGTATTACAAAATTCAATGT+TGG - chr5_1:49897848-49897867 Msa0734960:intron 20.0%
!! ATATATCATTGTCATATGTA+CGG - chr5_1:49897933-49897952 Msa0734960:intron 20.0%
!! TACAAGTCCAATATATATAT+GGG + chr5_1:49898474-49898493 None:intergenic 20.0%
!! ATACAAGTCCAATATATATA+TGG + chr5_1:49898475-49898494 None:intergenic 20.0%
!! ATATATATATTGGACTTGTA+TGG - chr5_1:49898474-49898493 Msa0734960:intron 20.0%
!!! ATATTATGTTTAGCTTTCTT+TGG - chr5_1:49899119-49899138 Msa0734960:intron 20.0%
! AATGAAAAGATCAAGAAAGA+CGG - chr5_1:49896679-49896698 Msa0734960:CDS 25.0%
! GTAGAAAAGTAAGAAAAACA+TGG + chr5_1:49896732-49896751 None:intergenic 25.0%
!!! ACTACTTTTTTAGGTTACAA+CGG - chr5_1:49896768-49896787 Msa0734960:intron 25.0%
!! TTGAATTATTAGGGTAGTTT+TGG - chr5_1:49896880-49896899 Msa0734960:intron 25.0%
!! TTCTTATGCTGAATGTTTTT+AGG - chr5_1:49896938-49896957 Msa0734960:intron 25.0%
! TATTATTCATAAGCTTGTCA+AGG - chr5_1:49897071-49897090 Msa0734960:intron 25.0%
! AAAAATAAGCCAATCCAAAT+GGG - chr5_1:49897202-49897221 Msa0734960:intron 25.0%
! CAATTCAACCATCAAATTAA+AGG + chr5_1:49897543-49897562 None:intergenic 25.0%
! TGGTTGAATTGATGAAATTA+AGG - chr5_1:49897552-49897571 Msa0734960:intron 25.0%
! GGTTGAATTGATGAAATTAA+GGG - chr5_1:49897553-49897572 Msa0734960:intron 25.0%
!! ATCATTGCATAACTTTTTAC+CGG + chr5_1:49897689-49897708 None:intergenic 25.0%
! TATAGATACTCCCTATATAT+AGG + chr5_1:49897721-49897740 None:intergenic 25.0%
! ATATAACAGATCCTATATGT+AGG - chr5_1:49897763-49897782 Msa0734960:intron 25.0%
! TATAACAGATCCTATATGTA+GGG - chr5_1:49897764-49897783 Msa0734960:intron 25.0%
! AGTATATCAGTGTAATACAT+GGG - chr5_1:49897787-49897806 Msa0734960:intron 25.0%
!!! TCGTTGAATAACTTTTTTAC+TGG - chr5_1:49897820-49897839 Msa0734960:intron 25.0%
! TTACAAAATTCAATGTTGGA+TGG - chr5_1:49897852-49897871 Msa0734960:intron 25.0%
! TACAAAATTCAATGTTGGAT+GGG - chr5_1:49897853-49897872 Msa0734960:intron 25.0%
! TATATCATTGTCATATGTAC+GGG - chr5_1:49897934-49897953 Msa0734960:intron 25.0%
!! TTTCTACCATCTTTTCTAAT+AGG + chr5_1:49898104-49898123 None:intergenic 25.0%
!! GTTTCTCTAATAGTTTTTGT+AGG + chr5_1:49898227-49898246 None:intergenic 25.0%
! TATTAGAGAAACTATCAAGA+AGG - chr5_1:49898235-49898254 Msa0734960:intron 25.0%
! ACAAGTCCAATATATATATG+GGG + chr5_1:49898473-49898492 None:intergenic 25.0%
! TATTGCTTATTCTCTCAATA+TGG - chr5_1:49898672-49898691 Msa0734960:intron 25.0%
!! CCATAGGTTTTTCATAAAAT+GGG + chr5_1:49898809-49898828 None:intergenic 25.0%
!! ACCATAGGTTTTTCATAAAA+TGG + chr5_1:49898810-49898829 None:intergenic 25.0%
! CAGTATAACTTTAATACCAT+AGG + chr5_1:49898825-49898844 None:intergenic 25.0%
! GTACACAAATTAACAGATAT+AGG + chr5_1:49898848-49898867 None:intergenic 25.0%
! TAATTTCTCTTAATGTCCAT+TGG - chr5_1:49898950-49898969 Msa0734960:intron 25.0%
! GAATTCTTGGTTAAACATTA+TGG - chr5_1:49899019-49899038 Msa0734960:intron 25.0%
!!! TTTGAAATCTTTTGTCATGT+TGG - chr5_1:49899142-49899161 Msa0734960:intron 25.0%
!!! CTTGTTTTTGTATGAAGTTA+CGG - chr5_1:49899233-49899252 Msa0734960:intron 25.0%
!!! TTGTTTTTGTATGAAGTTAC+GGG - chr5_1:49899234-49899253 Msa0734960:intron 25.0%
!!! TTTTAGAAGCATATCATTGA+TGG + chr5_1:49899282-49899301 None:intergenic 25.0%
!! ATGTAAATGGTTTGATTTGG+AGG + chr5_1:49896649-49896668 None:intergenic 30.0%
GAAAAACATGGGAATGTAAA+TGG + chr5_1:49896720-49896739 None:intergenic 30.0%
CGAAAATAAGTCAATCCAAA+CGG + chr5_1:49897023-49897042 None:intergenic 30.0%
CAAAAATAAGCCAATCCAAA+TGG - chr5_1:49897201-49897220 Msa0734960:intron 30.0%
GCGTATTATGTATGAGAAAA+GGG - chr5_1:49897224-49897243 Msa0734960:intron 30.0%
TTGAATTGCCAATCTATTGT+TGG - chr5_1:49897311-49897330 Msa0734960:CDS 30.0%
!! TTATTTTATGAAGTCTCGCA+TGG - chr5_1:49897470-49897489 Msa0734960:intron 30.0%
! CATAACTTTTTACCGGATAT+AGG + chr5_1:49897682-49897701 None:intergenic 30.0%
!! ATATAGGGAGTATCTATATC+CGG - chr5_1:49897723-49897742 Msa0734960:intron 30.0%
GAGTATATCAGTGTAATACA+TGG - chr5_1:49897786-49897805 Msa0734960:intron 30.0%
GAAATGACAACATTAGAGAA+AGG - chr5_1:49898068-49898087 Msa0734960:intron 30.0%
TTAATCTTGACGTATGATAG+AGG - chr5_1:49898440-49898459 Msa0734960:intron 30.0%
! TTGCTCTTGATTTTCCATTT+CGG - chr5_1:49898500-49898519 Msa0734960:intron 30.0%
!!! GTAATTGGATTTTGTTTTGC+TGG - chr5_1:49898532-49898551 Msa0734960:intron 30.0%
! CCCATTTTATGAAAAACCTA+TGG - chr5_1:49898806-49898825 Msa0734960:intron 30.0%
AAAACGTGATAAAACACAAC+AGG + chr5_1:49898883-49898902 None:intergenic 30.0%
TAACCAAGAATTCTTACAAG+CGG + chr5_1:49899012-49899031 None:intergenic 30.0%
AAGAATGAGAATGAAAGATG+TGG - chr5_1:49899181-49899200 Msa0734960:intron 30.0%
!! TGTTTTTGTATGAAGTTACG+GGG - chr5_1:49899235-49899254 Msa0734960:intron 30.0%
AGATTGTATTGCTAAAGAAG+AGG - chr5_1:49899354-49899373 Msa0734960:intron 30.0%
GATTGTATTGCTAAAGAAGA+GGG - chr5_1:49899355-49899374 Msa0734960:intron 30.0%
AAAAAGAAACAAGAGGAGAA+AGG - chr5_1:49899400-49899419 Msa0734960:CDS 30.0%
TCAAAAAGTGAGGATGATTA+TGG + chr5_1:49899458-49899477 None:intergenic 30.0%
!!! TTTTAGGTTACAACGGTTCT+TGG - chr5_1:49896775-49896794 Msa0734960:intron 35.0%
ATTACGTTGCTTGAGAGTTA+TGG - chr5_1:49896826-49896845 Msa0734960:intron 35.0%
!!! GGTAGTTTTGGATTTGTGTT+AGG - chr5_1:49896892-49896911 Msa0734960:intron 35.0%
TCATACATAATACGCCCATT+TGG + chr5_1:49897219-49897238 None:intergenic 35.0%
GGCGTATTATGTATGAGAAA+AGG - chr5_1:49897223-49897242 Msa0734960:intron 35.0%
!! AACTGTGAGTTTTGTGATAC+AGG - chr5_1:49897653-49897672 Msa0734960:intron 35.0%
TGATACAGGTATCCTATATC+CGG - chr5_1:49897667-49897686 Msa0734960:intron 35.0%
CTGATATACTCCCTACATAT+AGG + chr5_1:49897777-49897796 None:intergenic 35.0%
GTAGCACCTATTAGAAAAGA+TGG - chr5_1:49898095-49898114 Msa0734960:intron 35.0%
AGATGGTAGAAACTAGACTT+AGG - chr5_1:49898112-49898131 Msa0734960:intron 35.0%
AAACTAGACTTAGGTGGTTT+GGG - chr5_1:49898121-49898140 Msa0734960:intron 35.0%
TAGTTAGGAGAGTAGATTAG+TGG - chr5_1:49898172-49898191 Msa0734960:intron 35.0%
AGTTAGGAGAGTAGATTAGT+GGG - chr5_1:49898173-49898192 Msa0734960:intron 35.0%
AGTCAAATCACTAGAGGTAA+GGG - chr5_1:49898197-49898216 Msa0734960:intron 35.0%
GGATCTAGATATCAATGAGT+TGG - chr5_1:49898256-49898275 Msa0734960:intron 35.0%
! TTGGAGAAAGACATGGTTTT+CGG - chr5_1:49898275-49898294 Msa0734960:intron 35.0%
! TGCTCTTGATTTTCCATTTC+GGG - chr5_1:49898501-49898520 Msa0734960:intron 35.0%
!!! GATTTTGTTTTGCTGGTCTT+GGG - chr5_1:49898539-49898558 Msa0734960:intron 35.0%
!!! ATTTTGTTTTGCTGGTCTTG+GGG - chr5_1:49898540-49898559 Msa0734960:intron 35.0%
!! TGTTCTATTTGTTGTCGTTG+TGG - chr5_1:49898629-49898648 Msa0734960:intron 35.0%
GCTTATTCTCTCAATATGGA+AGG - chr5_1:49898676-49898695 Msa0734960:intron 35.0%
! CTCTCAATATGGAAGGATTT+TGG - chr5_1:49898683-49898702 Msa0734960:intron 35.0%
ACAGAATTCATGATGTCCAA+TGG + chr5_1:49898969-49898988 None:intergenic 35.0%
TCTTACAAGCGGCTATATTT+GGG + chr5_1:49899001-49899020 None:intergenic 35.0%
TTCTTACAAGCGGCTATATT+TGG + chr5_1:49899002-49899021 None:intergenic 35.0%
! TGTTTCTTTTTCTTCTCCCT+TGG + chr5_1:49899391-49899410 None:intergenic 35.0%
GGAGAAGAAAAAGAAACAAG+AGG - chr5_1:49899393-49899412 Msa0734960:CDS 35.0%
GAGGATGATTATGGTTTGAA+AGG + chr5_1:49899449-49899468 None:intergenic 35.0%
TGAACTGGGCATTTCTTAGT+TGG - chr5_1:49896988-49897007 Msa0734960:intron 40.0%
CATAATACGCCCATTTGGAT+TGG + chr5_1:49897214-49897233 None:intergenic 40.0%
TCGAAGAGTAACTTTGAGCA+GGG + chr5_1:49897606-49897625 None:intergenic 40.0%
TTGTCATATGTACGGGACAA+AGG - chr5_1:49897941-49897960 Msa0734960:intron 40.0%
TGTCATATGTACGGGACAAA+GGG - chr5_1:49897942-49897961 Msa0734960:intron 40.0%
AATTAAGCGTAGCAGAGATG+AGG - chr5_1:49897994-49898013 Msa0734960:intron 40.0%
AGGATGTTGCATACTTGCAT+TGG - chr5_1:49898014-49898033 Msa0734960:intron 40.0%
TGGTAGAAACTAGACTTAGG+TGG - chr5_1:49898115-49898134 Msa0734960:intron 40.0%
GAAACTAGACTTAGGTGGTT+TGG - chr5_1:49898120-49898139 Msa0734960:intron 40.0%
GTTAGGAGAGTAGATTAGTG+GGG - chr5_1:49898174-49898193 Msa0734960:intron 40.0%
GAGTCAAATCACTAGAGGTA+AGG - chr5_1:49898196-49898215 Msa0734960:intron 40.0%
! CAATGAGTTGGAGAAAGACA+TGG - chr5_1:49898268-49898287 Msa0734960:intron 40.0%
! TGGTTTTCGGTAGAACACTA+TGG - chr5_1:49898288-49898307 Msa0734960:intron 40.0%
TTGACGTATGATAGAGGACT+CGG - chr5_1:49898446-49898465 Msa0734960:intron 40.0%
CTCGGTCCCCATATATATAT+TGG - chr5_1:49898464-49898483 Msa0734960:intron 40.0%
! GCTCTTGATTTTCCATTTCG+GGG - chr5_1:49898502-49898521 Msa0734960:intron 40.0%
! CTCTTGATTTTCCATTTCGG+GGG - chr5_1:49898503-49898522 Msa0734960:intron 40.0%
! TCTTGATTTTCCATTTCGGG+GGG - chr5_1:49898504-49898523 Msa0734960:intron 40.0%
ATTACAATATCCCCCCGAAA+TGG + chr5_1:49898517-49898536 None:intergenic 40.0%
TTTCGGGGGGATATTGTAAT+TGG - chr5_1:49898517-49898536 Msa0734960:intron 40.0%
!!! GGATTTTGTTTTGCTGGTCT+TGG - chr5_1:49898538-49898557 Msa0734960:intron 40.0%
!!! TTTTGTTTTGCTGGTCTTGG+GGG - chr5_1:49898541-49898560 Msa0734960:intron 40.0%
CACTGTAAGATAACTTGAGC+AGG + chr5_1:49898913-49898932 None:intergenic 40.0%
TAGCCGCTTGTAAGAATTCT+TGG - chr5_1:49899006-49899025 Msa0734960:intron 40.0%
AAGAGGAGAAAGGTGAAGAA+TGG - chr5_1:49899410-49899429 Msa0734960:CDS 40.0%
!! TGAAAGCATCCTCTCTGGTT+TGG + chr5_1:49896617-49896636 None:intergenic 45.0%
AAACCAGAGAGGATGCTTTC+AGG - chr5_1:49896616-49896635 Msa0734960:CDS 45.0%
AACCAGAGAGGATGCTTTCA+GGG - chr5_1:49896617-49896636 Msa0734960:CDS 45.0%
AGTTGGACAATGTGTCCGTT+TGG - chr5_1:49897005-49897024 Msa0734960:intron 45.0%
CTCGAAGAGTAACTTTGAGC+AGG + chr5_1:49897607-49897626 None:intergenic 45.0%
ATATGTACGGGACAAAGGGT+TGG - chr5_1:49897946-49897965 Msa0734960:intron 45.0%
GCATACTTGCATTGGATGTG+TGG - chr5_1:49898022-49898041 Msa0734960:intron 45.0%
GATGTGTGGTAAGACTAGAC+TGG - chr5_1:49898036-49898055 Msa0734960:intron 45.0%
GACAACATTAGAGAAAGGCG+AGG - chr5_1:49898073-49898092 Msa0734960:intron 45.0%
!! AAGAGGGAAGCTTTGTTCCA+AGG - chr5_1:49899371-49899390 Msa0734960:CDS 45.0%
!! AGAGGGAAGCTTTGTTCCAA+GGG - chr5_1:49899372-49899391 Msa0734960:CDS 45.0%
!! CCTCTCTGGTTTGGTTCTGA+TGG + chr5_1:49896608-49896627 None:intergenic 50.0%
CCATCAGAACCAAACCAGAG+AGG - chr5_1:49896605-49896624 Msa0734960:CDS 50.0%
ACCAGAGAGGATGCTTTCAG+GGG - chr5_1:49896618-49896637 Msa0734960:CDS 50.0%
GGCATGTAGAGAGAAGACCT+GGG - chr5_1:49898142-49898161 Msa0734960:intron 50.0%
GCATGTAGAGAGAAGACCTG+GGG - chr5_1:49898143-49898162 Msa0734960:intron 50.0%
GTGGGGAGTCAAATCACTAG+AGG - chr5_1:49898191-49898210 Msa0734960:intron 50.0%
! AAGCCTTATCCCACCAAGTG+GGG + chr5_1:49898337-49898356 None:intergenic 50.0%
! CAAGCCTTATCCCACCAAGT+GGG + chr5_1:49898338-49898357 None:intergenic 50.0%
CTAAAGACGCCTAAGCTTCG+AGG - chr5_1:49898717-49898736 Msa0734960:intron 50.0%
TAAGCTTCGAGGACAGGCAT+GGG - chr5_1:49898728-49898747 Msa0734960:intron 50.0%
CATCTGTCGCACTGCATTAC+TGG + chr5_1:49898778-49898797 None:intergenic 50.0%
!! TCCCCTGAAAGCATCCTCTC+TGG + chr5_1:49896622-49896641 None:intergenic 55.0%
GTACGGGACAAAGGGTTGGA+CGG - chr5_1:49897950-49897969 Msa0734960:intron 55.0%
GGGCATGTAGAGAGAAGACC+TGG - chr5_1:49898141-49898160 Msa0734960:intron 55.0%
GACCTGGGGATGCTGTAGTT+AGG - chr5_1:49898157-49898176 Msa0734960:intron 55.0%
CTCCTAACTACAGCATCCCC+AGG + chr5_1:49898162-49898181 None:intergenic 55.0%
TGTATGTAGCCGACCCCACT+TGG - chr5_1:49898321-49898340 Msa0734960:intron 55.0%
CTTATCCCACCAAGTGGGGT+CGG + chr5_1:49898333-49898352 None:intergenic 55.0%
! CCAAGCCTTATCCCACCAAG+TGG + chr5_1:49898339-49898358 None:intergenic 55.0%
! CCACTTGGTGGGATAAGGCT+TGG - chr5_1:49898336-49898355 Msa0734960:intron 55.0%
CATGCCTGTCCTCGAAGCTT+AGG + chr5_1:49898729-49898748 None:intergenic 55.0%
CTAAGCTTCGAGGACAGGCA+TGG - chr5_1:49898727-49898746 Msa0734960:intron 55.0%
ATGTAGCCGACCCCACTTGG+TGG - chr5_1:49898324-49898343 Msa0734960:intron 60.0%
TGTAGCCGACCCCACTTGGT+GGG - chr5_1:49898325-49898344 Msa0734960:intron 60.0%
! CGACCCCACTTGGTGGGATA+AGG - chr5_1:49898331-49898350 Msa0734960:intron 60.0%
GACGCCTAAGCTTCGAGGAC+AGG - chr5_1:49898722-49898741 Msa0734960:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 49896572 49899495 49896572 ID=Msa0734960;Name=Msa0734960
chr5_1 mRNA 49896572 49899495 49896572 ID=Msa0734960-mRNA-1;Parent=Msa0734960;Name=Msa0734960-mRNA-1;_AED=0.02;_eAED=0.02;_QI=56|1|1|1|1|1|3|18|131
chr5_1 exon 49896572 49896739 49896572 ID=Msa0734960-mRNA-1:exon:14096;Parent=Msa0734960-mRNA-1
chr5_1 exon 49897240 49897412 49897240 ID=Msa0734960-mRNA-1:exon:14095;Parent=Msa0734960-mRNA-1
chr5_1 exon 49899367 49899495 49899367 ID=Msa0734960-mRNA-1:exon:14094;Parent=Msa0734960-mRNA-1
chr5_1 five_prime_UTR 49899440 49899495 49899440 ID=Msa0734960-mRNA-1:five_prime_utr;Parent=Msa0734960-mRNA-1
chr5_1 CDS 49899367 49899439 49899367 ID=Msa0734960-mRNA-1:cds;Parent=Msa0734960-mRNA-1
chr5_1 CDS 49897240 49897412 49897240 ID=Msa0734960-mRNA-1:cds;Parent=Msa0734960-mRNA-1
chr5_1 CDS 49896590 49896739 49896590 ID=Msa0734960-mRNA-1:cds;Parent=Msa0734960-mRNA-1
chr5_1 three_prime_UTR 49896572 49896589 49896572 ID=Msa0734960-mRNA-1:three_prime_utr;Parent=Msa0734960-mRNA-1
Gene Sequence

>Msa0734960

ATGCTTTCAGGGGATATACCTCCAAATCAAACCATTTACATTAAGAATCTCAATGAAAAGATCAAGAAAGACGAGTTAAAGAGATCTCTGTATTGCTTATTCTCTCAATATGGAAGGATTTTGGACATTATTGCTCTAAAGACGCCTAAGCTTCGAGGACAGGCATGGGTTTGTTTTAGCGAAGTAACTGCTGCCAGTAATGCAGTGCGACAGATGCAAAACTTCCCATTTTATGAAAAACCTATGAGAATTCAATATGCAAAAACAAAGTCAGATTGTATTGCTAAAGAAGAGGGAAGCTTTGTTCCAAGGGAGAAGAAAAAGAAACAAGAGGAGAAAGGTGAAGAATGGTCATTTATTTTTTCCTTTCAAACCATAATCATCCTCACTTTTTGA

Protein sequence

>Msa0734960

MLSGDIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKGEEWSFIFSFQTIIILTF*