AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0898060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0898060 MtrunA17_Chr6g0483611 95.618 639 24 2 1 635 1 639 0.0 1219
Msa0898060 MtrunA17_Chr8g0392371 48.189 635 242 28 22 635 20 588 2.02e-134 406
Msa0898060 MtrunA17_Chr1g0209151 42.857 399 160 18 3 357 14 388 3.79e-71 244
Msa0898060 MtrunA17_Chr4g0048541 43.411 258 110 12 58 298 28 266 1.76e-41 155
Msa0898060 MtrunA17_Chr2g0279951 50.926 108 48 3 58 165 43 145 5.41e-29 120
Msa0898060 MtrunA17_Chr2g0305141 43.931 173 74 7 38 200 146 305 1.02e-28 122
Msa0898060 MtrunA17_Chr4g0049441 48.214 112 51 4 58 167 38 144 2.07e-26 112
Msa0898060 MtrunA17_Chr4g0065211 38.323 167 84 7 42 201 139 293 3.19e-25 111
Msa0898060 MtrunA17_Chr2g0310761 41.379 145 75 5 58 200 168 304 4.40e-24 108
Msa0898060 MtrunA17_Chr6g0461841 42.647 136 68 4 31 164 162 289 2.04e-23 105
Msa0898060 MtrunA17_Chr2g0310781 34.722 216 117 7 59 272 151 344 2.08e-23 105
Msa0898060 MtrunA17_Chr2g0277031 40.476 126 63 3 44 169 2 115 1.07e-22 99.8
Msa0898060 MtrunA17_Chr1g0196631 46.729 107 50 3 58 164 193 292 1.52e-22 103
Msa0898060 MtrunA17_Chr5g0428011 46.789 109 52 3 58 165 26 129 2.86e-22 99.4
Msa0898060 MtrunA17_Chr8g0357611 37.255 153 87 4 59 210 179 323 3.94e-20 95.5
Msa0898060 MtrunA17_Chr4g0072741 42.254 142 71 5 53 193 46 177 5.96e-20 94.7
Msa0898060 MtrunA17_Chr5g0412711 46.000 100 53 1 55 154 12 110 1.79e-19 87.8
Msa0898060 MtrunA17_Chr5g0428071 36.054 147 79 4 56 193 40 180 2.87e-19 90.5
Msa0898060 MtrunA17_Chr3g0117061 48.352 91 45 1 55 145 5 93 4.20e-19 86.3
Msa0898060 MtrunA17_Chr5g0440771 44.643 112 52 5 58 165 3 108 3.39e-18 83.2
Msa0898060 MtrunA17_Chr4g0058551 46.316 95 49 1 55 149 5 97 2.74e-16 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0898060 AT2G01190.1 38.579 718 311 27 18 635 33 720 6.72e-102 326
Msa0898060 AT3G18230.1 41.463 656 262 24 54 635 59 666 2.83e-97 312
Msa0898060 AT4G05150.1 44.667 150 59 5 58 193 58 197 1.33e-33 134
Msa0898060 AT1G25300.1 53.704 108 41 2 58 165 10 108 2.64e-29 117
Msa0898060 AT5G09620.2 52.174 115 48 3 58 169 39 149 7.97e-29 120
Msa0898060 AT5G09620.1 52.174 115 48 3 58 169 39 149 8.17e-29 121
Msa0898060 AT5G64430.1 45.890 146 67 4 58 199 44 181 1.82e-27 117
Msa0898060 AT5G57610.1 44.203 138 69 4 58 194 23 153 1.25e-26 116
Msa0898060 AT5G16220.1 36.723 177 74 3 57 198 29 202 3.18e-24 107
Msa0898060 AT1G16270.1 35.976 164 92 3 57 214 163 319 6.70e-24 107
Msa0898060 AT1G16270.2 35.976 164 92 3 57 214 163 319 6.70e-24 107
Msa0898060 AT1G16270.3 35.976 164 92 3 57 214 163 319 6.70e-24 107
Msa0898060 AT5G49920.1 39.597 149 77 3 58 206 9 144 1.88e-23 101
Msa0898060 AT3G46920.1 37.419 155 87 4 58 209 8 155 2.43e-22 102
Msa0898060 AT3G46920.2 37.419 155 87 4 58 209 74 221 2.45e-22 102
Msa0898060 AT3G26510.1 46.789 109 49 3 59 164 10 112 5.12e-22 94.7
Msa0898060 AT3G26510.4 46.789 109 49 3 59 164 10 112 5.12e-22 94.7
Msa0898060 AT3G26510.3 46.789 109 49 3 59 164 10 112 5.12e-22 94.7
Msa0898060 AT3G26510.2 46.789 109 49 3 59 164 10 112 5.12e-22 94.7
Msa0898060 AT3G26510.6 46.789 109 49 3 59 164 10 112 5.12e-22 94.7
Msa0898060 AT3G26510.5 46.789 109 49 3 59 164 10 112 5.12e-22 94.7
Msa0898060 AT1G04700.3 43.307 127 61 3 38 164 105 220 2.87e-21 99.4
Msa0898060 AT1G04700.1 43.307 127 61 3 38 164 105 220 3.17e-21 99.4
Msa0898060 AT1G04700.2 43.307 127 61 3 38 164 105 220 3.17e-21 99.4
Msa0898060 AT2G35050.1 43.519 108 53 3 58 165 176 275 4.23e-21 99.0
Msa0898060 AT2G35050.2 43.519 108 53 3 58 165 176 275 4.23e-21 99.0
Msa0898060 AT3G48240.1 51.136 88 41 1 59 146 14 99 3.14e-20 89.0
Msa0898060 AT3G24715.1 41.667 108 56 2 58 165 175 275 1.97e-19 93.6
Msa0898060 AT3G24715.3 41.667 108 56 2 58 165 175 275 1.97e-19 93.6
Msa0898060 AT3G24715.2 41.667 108 56 2 58 165 175 275 1.97e-19 93.6
Msa0898060 AT1G70640.1 47.826 92 45 2 59 149 8 97 3.12e-18 83.2
Msa0898060 AT5G63130.1 48.936 94 46 1 56 149 12 103 2.70e-15 75.1
Msa0898060 AT5G63130.2 48.936 94 46 1 56 149 12 103 2.70e-15 75.1

Find 179 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGGGTTAGGTGCTTTATT+AGG 0.142649 6_1:+90717583 None:intergenic
ACTTGAACAAATGTTGAATT+AGG 0.181694 6_1:+90717559 None:intergenic
AGATTCTTTATTTGCATATA+AGG 0.236383 6_1:-90720187 Msa0898060:five_prime_UTR
CCATTAGAATTGGTGAGTTT+TGG 0.242966 6_1:+90719920 None:intergenic
ACTATATTCATAACCATAAT+TGG 0.249686 6_1:+90717444 None:intergenic
CCTCCTAGTGGTACCAATTA+TGG 0.272812 6_1:-90717457 Msa0898060:CDS
ACACTTGAATCTCAACTTAT+AGG 0.282398 6_1:-90720096 Msa0898060:five_prime_UTR
GAGAAACAGAGTTAGTTAAA+AGG 0.288036 6_1:+90720023 None:intergenic
TGTTGTAATGTCATGTTATA+TGG 0.292618 6_1:+90717679 None:intergenic
ACTTGGTAATATGATGAAAT+TGG 0.294397 6_1:+90717787 None:intergenic
CTATTAGAAGCTACCACATT+AGG 0.295088 6_1:+90717643 None:intergenic
TAGGGTTAGGTGCTTTATTA+GGG 0.295696 6_1:+90717584 None:intergenic
TCAGATTATGGAGGACAAAT+TGG 0.296055 6_1:-90718863 Msa0898060:CDS
CTAGGAGGAGCTACATTAAT+AGG 0.313944 6_1:+90717472 None:intergenic
GGTGCTTTATTAGGGTAAAT+TGG 0.314952 6_1:+90717592 None:intergenic
ACAAATGTTGAATTAGGGTT+AGG 0.325195 6_1:+90717565 None:intergenic
AGCTTGCCACCGGGGACATT+AGG 0.326160 6_1:+90719748 None:intergenic
GGTTGCGGCGGTGGAGATAA+GGG 0.328130 6_1:+90719891 None:intergenic
CTTGAACAAATGTTGAATTA+GGG 0.329171 6_1:+90717560 None:intergenic
GCGATCCACGACCACGATTC+TGG 0.330991 6_1:+90719648 None:intergenic
CCAAAACTCACCAATTCTAA+TGG 0.345127 6_1:-90719920 Msa0898060:exon
GATGATGAGAGATCAGATTA+TGG 0.354406 6_1:-90718875 Msa0898060:CDS
TCTAATCACTCTACTTAGTT+TGG 0.357265 6_1:+90719982 None:intergenic
CCAGTGTATGTAATGCCTAT+TGG 0.357269 6_1:-90717715 Msa0898060:CDS
TTCTTGATGATAAATAATCT+TGG 0.357557 6_1:+90717975 None:intergenic
CCATACCTTGTAACTGAATC+TGG 0.358887 6_1:+90718770 None:intergenic
AGGAATGGTGGTTGCGGCGG+TGG 0.359388 6_1:+90719882 None:intergenic
CCCATTGAAAGTGTGGTATC+TGG 0.360704 6_1:+90719397 None:intergenic
GATGCTTCCCAACAATTTCC+TGG 0.362851 6_1:-90717316 Msa0898060:CDS
ACAACAAAATAATGCTCCTT+TGG 0.364011 6_1:-90717389 Msa0898060:CDS
AGGCCAATAATACCACAAAA+TGG 0.366926 6_1:-90717622 Msa0898060:CDS
GTTGTTGTGGTGGTGGTTGT+TGG 0.367405 6_1:+90717869 None:intergenic
GCTTGAAAACAACAACAATA+AGG 0.375409 6_1:-90719200 Msa0898060:CDS
AATATGTTTATTCACTAAGT+TGG 0.376692 6_1:-90717086 Msa0898060:three_prime_UTR
CTAATGTGGTAGCTTCTAAT+AGG 0.379802 6_1:-90717642 Msa0898060:CDS
TTCATCTTTGACTCCTTCAA+TGG 0.381472 6_1:-90719101 Msa0898060:CDS
ACCAGATACCACACTTTCAA+TGG 0.385542 6_1:-90719398 Msa0898060:CDS
TGGTTGCGGCGGTGGAGATA+AGG 0.395600 6_1:+90719890 None:intergenic
GGTTGTTGGAGTTGTTGATT+TGG 0.402867 6_1:+90717883 None:intergenic
AGGAATAGCAGAGTGAAAAC+AGG 0.407587 6_1:+90720043 None:intergenic
GTTTGGTGCAGAGTGAAAAC+AGG 0.409676 6_1:+90719999 None:intergenic
CGTGGTGGTGGCTGTGGTGG+TGG 0.411827 6_1:+90719808 None:intergenic
TTCTTCTGCTAATGTGGCTA+TGG 0.422627 6_1:-90718978 Msa0898060:CDS
CAAATGTTGAATTAGGGTTA+GGG 0.423748 6_1:+90717566 None:intergenic
CATTATCTCCAGGAAATTGT+TGG 0.425526 6_1:+90717308 None:intergenic
TCACATAGAAAGAGAAATAG+AGG 0.427157 6_1:-90720127 Msa0898060:five_prime_UTR
TATTAGAAGCTACCACATTA+GGG 0.432131 6_1:+90717644 None:intergenic
CTTTCGAGAACAATTCTTAA+CGG 0.437708 6_1:-90719595 Msa0898060:CDS
GTGGTGATGTTAATGTGAAT+AGG 0.439737 6_1:-90718907 Msa0898060:CDS
TGTTCTCTATATTTGTACCT+TGG 0.440592 6_1:+90717947 None:intergenic
AATGCTGCAGCAGCAGCTGC+AGG 0.444841 6_1:+90717343 None:intergenic
ACTTCACAACCGGTATAAAT+CGG 0.447440 6_1:-90717268 Msa0898060:exon
TGTTGATTTGGATCTGATTG+TGG 0.447760 6_1:+90717895 None:intergenic
ACTCTTAATCTTGATGATGA+AGG 0.448004 6_1:+90719439 None:intergenic
AGGGGTGGATCCATTAGAAT+TGG 0.451765 6_1:+90719910 None:intergenic
GTCAAATAGAACTTCACAAC+CGG 0.455061 6_1:-90717278 Msa0898060:CDS
GTTGAATTAGGGTTAGGGTT+AGG 0.457137 6_1:+90717571 None:intergenic
AATTGTTGTTGTTGTGGTGG+TGG 0.458277 6_1:+90717862 None:intergenic
TACTTGGAAATTCCGACTGC+AGG 0.460237 6_1:+90717235 None:intergenic
GTTGCGGCGGTGGAGATAAG+GGG 0.466311 6_1:+90719892 None:intergenic
CTTCACCAGATTCAGTTACA+AGG 0.472765 6_1:-90718775 Msa0898060:intron
TGAATTTGTGATTGTTGTGA+TGG 0.476153 6_1:+90717754 None:intergenic
TGAAATTGGAACTTGATTTG+TGG 0.478641 6_1:+90717801 None:intergenic
TGGTGATGTTAATGTGAATA+GGG 0.479523 6_1:-90718906 Msa0898060:CDS
GACTGCTGAACATTATCTCC+AGG 0.481175 6_1:+90717298 None:intergenic
TGGAATACTAAGACAAAAGC+TGG 0.482124 6_1:-90720254 None:intergenic
ATTATCTCCAGGAAATTGTT+GGG 0.482358 6_1:+90717309 None:intergenic
TTGGATGATGTTAGGAGGAA+TGG 0.492279 6_1:+90719867 None:intergenic
CTGTGGTGGTGGCGATGATA+AGG 0.492297 6_1:+90719819 None:intergenic
TCATCAACACAAACACGAAT+CGG 0.493359 6_1:+90719067 None:intergenic
ATTTGTGATTGTTGTGATGG+TGG 0.494094 6_1:+90717757 None:intergenic
GGTTGTTGTGTAGATCCAAT+AGG 0.494757 6_1:+90717700 None:intergenic
CAGGGGAGAAACAGAGTAAG+TGG 0.496252 6_1:+90720062 None:intergenic
GATAAGGACTCGATCGACTC+AGG 0.496681 6_1:+90719835 None:intergenic
CATCTGATGTTACTGTAATG+AGG 0.497110 6_1:+90719524 None:intergenic
GTGATGGTGGAGGGTAAACT+TGG 0.498230 6_1:+90717770 None:intergenic
TGTTGTTGAAATTGATTCGA+AGG 0.500648 6_1:+90717535 None:intergenic
TGAACAAATTGTTGTTGTTG+TGG 0.501182 6_1:+90717856 None:intergenic
GGAACTTGATTTGTGGATGT+AGG 0.503316 6_1:+90717808 None:intergenic
GAAGCCATTGTCATTGCTGC+AGG 0.505850 6_1:+90718947 None:intergenic
CATGAGACGAAGCTTGCCAC+CGG 0.506663 6_1:+90719738 None:intergenic
AATTATGGTTATGAATATAG+TGG 0.506746 6_1:-90717442 Msa0898060:CDS
GAACTTGATTTGTGGATGTA+GGG 0.509377 6_1:+90717809 None:intergenic
CCAGATACCACACTTTCAAT+GGG 0.510170 6_1:-90719397 Msa0898060:CDS
TGTTGTTTCTTCTGCTAATG+TGG 0.511399 6_1:-90718984 Msa0898060:CDS
CTTCGTCTCATGTGCAGCTA+CGG 0.512697 6_1:-90719727 Msa0898060:CDS
GATAAGTCTCTATGTTATGT+AGG 0.513509 6_1:-90719679 Msa0898060:CDS
TGACACCAGAATCGTGGTCG+TGG 0.514574 6_1:-90719653 Msa0898060:CDS
TTCTCGAAAGGCGCGAACAT+AGG 0.519863 6_1:+90719608 None:intergenic
AGGAAATTGTTGGGAAGCAT+CGG 0.522009 6_1:+90717318 None:intergenic
GCAATGACAATGGCTTCAGC+TGG 0.523790 6_1:-90718941 Msa0898060:CDS
CTCACACCACCACTAGTCCT+TGG 0.525251 6_1:+90718803 None:intergenic
CGTCTCATGTGCAGCTACGG+AGG 0.527353 6_1:-90719724 Msa0898060:CDS
GGTGGCAAATTCTCCATTGA+AGG 0.528503 6_1:+90719088 None:intergenic
GTGGTGTATATAGTGAGTGT+TGG 0.528585 6_1:+90717831 None:intergenic
AGAGGTGTGTCAGATTCAGC+AGG 0.528641 6_1:-90719304 Msa0898060:CDS
TGGTGTATATAGTGAGTGTT+GGG 0.532795 6_1:+90717832 None:intergenic
CGTTAAGAATTGTTCTCGAA+AGG 0.533418 6_1:+90719596 None:intergenic
CAGCTGCAGGAGTCATGGAT+TGG 0.535143 6_1:+90717356 None:intergenic
TGTGATCGTGGTGGTGGCTG+TGG 0.535147 6_1:+90719802 None:intergenic
TGAACAAGCTGCAATGGTAA+AGG 0.535312 6_1:+90718827 None:intergenic
AGAATACTGACTATCATACT+TGG 0.537358 6_1:+90717219 None:intergenic
CAATTTCAACAACAATATGT+TGG 0.538930 6_1:-90717526 Msa0898060:CDS
AATCTGAATCCGATTTATAC+CGG 0.540405 6_1:+90717259 None:intergenic
ATGAGACGAAGCTTGCCACC+GGG 0.542054 6_1:+90719739 None:intergenic
GATCGTGGTGGTGGCTGTGG+TGG 0.546440 6_1:+90719805 None:intergenic
TTATTGCTTGAATCACTAGC+AGG 0.547203 6_1:+90719253 None:intergenic
CAAGATCTTCACGAGGAAGC+TGG 0.547959 6_1:+90719551 None:intergenic
ACTAAGTGACTAGTGACTGC+AGG 0.548513 6_1:-90717110 Msa0898060:three_prime_UTR
TAGTGATTCAAGCAATAACT+TGG 0.550481 6_1:-90719248 Msa0898060:CDS
TTTGACCGATCGATCTTGAT+CGG 0.550838 6_1:-90717144 Msa0898060:three_prime_UTR
GTTGATGCACTCAACAACTC+AGG 0.551095 6_1:-90719337 Msa0898060:CDS
AGGAGGAATGGTGGTTGCGG+CGG 0.553526 6_1:+90719879 None:intergenic
GTTAGGAGGAATGGTGGTTG+CGG 0.554956 6_1:+90719876 None:intergenic
TGTGATTGTTGTGATGGTGG+AGG 0.556066 6_1:+90717760 None:intergenic
TCAGCTGGAGTTGTTACTAG+TGG 0.557237 6_1:-90718926 Msa0898060:CDS
GTGATTGTTGTGATGGTGGA+GGG 0.558817 6_1:+90717761 None:intergenic
TTAACATGTGATCGTGGTGG+TGG 0.560719 6_1:+90719796 None:intergenic
AGCAGCAGCTGCAGGAGTCA+TGG 0.562009 6_1:+90717351 None:intergenic
TTGATGCACTCAACAACTCA+GGG 0.562066 6_1:-90719336 Msa0898060:CDS
GTCTCATGTGCAGCTACGGA+GGG 0.562228 6_1:-90719723 Msa0898060:CDS
CTTGATTTGTGGATGTAGGG+TGG 0.562709 6_1:+90717812 None:intergenic
GCTTTATTAGGGTAAATTGG+TGG 0.566463 6_1:+90717595 None:intergenic
CTTGGTTGAACAAGCTGCAA+TGG 0.570036 6_1:+90718821 None:intergenic
TTGATGAAAATGCTGGTAGC+AGG 0.570446 6_1:-90719051 Msa0898060:CDS
GTTTGTGTTGATGAAAATGC+TGG 0.571146 6_1:-90719058 Msa0898060:CDS
TGTGGTTGATGATGAAATTG+AGG 0.571680 6_1:+90717499 None:intergenic
GACTCCTTCCCTAATGTCCC+CGG 0.573625 6_1:-90719757 Msa0898060:CDS
GAATATAGTGGTAATGTGGA+AGG 0.576884 6_1:-90717430 Msa0898060:CDS
CCAATAGGCATTACATACAC+TGG 0.577687 6_1:+90717715 None:intergenic
CTTGTAACTGAATCTGGTGA+AGG 0.582351 6_1:+90718776 None:intergenic
ACTTGGAAATTCCGACTGCA+GGG 0.585346 6_1:+90717236 None:intergenic
GACCACCGATCAAGATCGAT+CGG 0.585863 6_1:+90717139 None:intergenic
ACAAATTGTTGTTGTTGTGG+TGG 0.586159 6_1:+90717859 None:intergenic
CTTGTTCAACCAAGGACTAG+TGG 0.587169 6_1:-90718812 Msa0898060:CDS
AAAGTTGTAATGAAGCAAGA+TGG 0.595849 6_1:-90719013 Msa0898060:CDS
AAGTGATCCCATTGAAAGTG+TGG 0.597227 6_1:+90719390 None:intergenic
AACATGTAACTTGAATCTTG+AGG 0.598939 6_1:+90717922 None:intergenic
GCGGCGGTGGAGATAAGGGG+TGG 0.603325 6_1:+90719895 None:intergenic
GACCGATCGATCTTGATCGG+TGG 0.603894 6_1:-90717141 Msa0898060:three_prime_UTR
TGATTTGGATCTGATTGTGG+TGG 0.606936 6_1:+90717898 None:intergenic
ACATACACTGGATATTGTTG+TGG 0.607055 6_1:+90717727 None:intergenic
GGATTCAGATTCCCTGCAGT+CGG 0.609652 6_1:-90717247 Msa0898060:three_prime_UTR
GGAATAGCAGAGTGAAAACA+GGG 0.611692 6_1:+90720044 None:intergenic
CGGAGCGGAACAGAACAGAA+TGG 0.616944 6_1:+90719955 None:intergenic
GCTACATTAATAGGAACTTG+TGG 0.617987 6_1:+90717481 None:intergenic
TAATATAAATGACCCTAATG+TGG 0.618458 6_1:-90717656 Msa0898060:CDS
CATTGCAGCTTGTTCAACCA+AGG 0.622441 6_1:-90718820 Msa0898060:CDS
AACTCAGGGATTCTCTCAAG+AGG 0.622550 6_1:-90719322 Msa0898060:CDS
AATTCCTGCAGCAATGACAA+TGG 0.625152 6_1:-90718951 Msa0898060:CDS
GATGATGTTAGGAGGAATGG+TGG 0.629860 6_1:+90719870 None:intergenic
AAGCTGGTACTTGAGAGTAA+AGG 0.631638 6_1:+90719567 None:intergenic
TTATGAATATAGTGGTAATG+TGG 0.637729 6_1:-90717434 Msa0898060:CDS
CTAAGTGACTAGTGACTGCA+GGG 0.638083 6_1:-90717109 Msa0898060:three_prime_UTR
TTTGGTGCAGAGTGAAAACA+GGG 0.643559 6_1:+90720000 None:intergenic
ACACTGGATATTGTTGTGGA+TGG 0.644950 6_1:+90717731 None:intergenic
CCATAATTGGTACCACTAGG+AGG 0.645975 6_1:+90717457 None:intergenic
TATCATCAAGAACAAGTCCA+AGG 0.646741 6_1:-90717964 Msa0898060:CDS
GTTTCATTAACATGTGATCG+TGG 0.649887 6_1:+90719790 None:intergenic
TCAACACAAACACGAATCGG+TGG 0.651252 6_1:+90719070 None:intergenic
GCCACCGGGGACATTAGGGA+AGG 0.653433 6_1:+90719753 None:intergenic
ACAAGCTGCAATGGTAAAGG+CGG 0.660310 6_1:+90718830 None:intergenic
TAACATAGAGACTTATCATG+AGG 0.662427 6_1:+90719685 None:intergenic
ATGATGCAAAATCTGAGACA+TGG 0.663147 6_1:-90719363 Msa0898060:CDS
TGGAATAAAATGGAACGGAG+CGG 0.664354 6_1:+90719940 None:intergenic
GATGAGAGATCAGATTATGG+AGG 0.672016 6_1:-90718872 Msa0898060:CDS
GATTGGTACTGAGTAACCAA+AGG 0.673524 6_1:+90717373 None:intergenic
ATTAATGTAGCTCCTCCTAG+TGG 0.674238 6_1:-90717469 Msa0898060:CDS
AAGTCTCTATGTTATGTAGG+CGG 0.674337 6_1:-90719676 Msa0898060:CDS
TAACCATAATTGGTACCACT+AGG 0.675449 6_1:+90717454 None:intergenic
GTTCAACCAAGGACTAGTGG+TGG 0.681531 6_1:-90718809 Msa0898060:CDS
AGGCGGTGACACCAGAATCG+TGG 0.682815 6_1:-90719659 Msa0898060:CDS
TCCTTCCCTAATGTCCCCGG+TGG 0.690061 6_1:-90719754 Msa0898060:CDS
AGAGACTTATCATGAGGACG+CGG 0.691797 6_1:+90719691 None:intergenic
TGAGACGAAGCTTGCCACCG+GGG 0.695282 6_1:+90719740 None:intergenic
TCATTAACATGTGATCGTGG+TGG 0.712353 6_1:+90719793 None:intergenic
GAATAGCAGAGTGAAAACAG+GGG 0.755698 6_1:+90720045 None:intergenic
AGGTTATCAAGATCTTCACG+AGG 0.763857 6_1:+90719544 None:intergenic
TTGGTGCAGAGTGAAAACAG+GGG 0.854008 6_1:+90720001 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATAAAAATTATGTTTAGT+AGG - chr6_1:90718604-90718623 Msa0898060:intron 15.0%
!!! ATTTTTTTCTATAGAAAAGT+AGG + chr6_1:90720207-90720226 None:intergenic 15.0%
!!! AGATTCTTTATTTGCATATA+AGG - chr6_1:90717044-90717063 Msa0898060:three_prime_UTR 20.0%
!! ATGGTTAAAGACAATAAATT+TGG - chr6_1:90718867-90718886 Msa0898060:CDS 20.0%
!!! ACCATTTTAAATTTGTCTAT+AGG - chr6_1:90718894-90718913 Msa0898060:CDS 20.0%
!! TCCTATAGACAAATTTAAAA+TGG + chr6_1:90718898-90718917 None:intergenic 20.0%
!!! TTCTTGATGATAAATAATCT+TGG + chr6_1:90719259-90719278 None:intergenic 20.0%
!! ACTATATTCATAACCATAAT+TGG + chr6_1:90719790-90719809 None:intergenic 20.0%
!! AATTATGGTTATGAATATAG+TGG - chr6_1:90719789-90719808 Msa0898060:CDS 20.0%
!! AATATGTTTATTCACTAAGT+TGG - chr6_1:90720145-90720164 Msa0898060:five_prime_UTR 20.0%
!!! TATGTGACTTTACTTTTGAA+AGG + chr6_1:90717091-90717110 None:intergenic 25.0%
!!! AGTTTTGGAATAAAATGGAA+CGG + chr6_1:90717299-90717318 None:intergenic 25.0%
!!! AAGCAATAATAGTTGGTTTT+TGG + chr6_1:90718768-90718787 None:intergenic 25.0%
! AGTAATAATGATCAATGAGA+TGG - chr6_1:90718848-90718867 Msa0898060:CDS 25.0%
! TTAAATTTGTCTATAGGAGA+TGG - chr6_1:90718900-90718919 Msa0898060:CDS 25.0%
!! ACTTGGTAATATGATGAAAT+TGG + chr6_1:90719447-90719466 None:intergenic 25.0%
! TGTTGTAATGTCATGTTATA+TGG + chr6_1:90719555-90719574 None:intergenic 25.0%
! TAATATAAATGACCCTAATG+TGG - chr6_1:90719575-90719594 Msa0898060:CDS 25.0%
! CTTGAACAAATGTTGAATTA+GGG + chr6_1:90719674-90719693 None:intergenic 25.0%
! ACTTGAACAAATGTTGAATT+AGG + chr6_1:90719675-90719694 None:intergenic 25.0%
! CAATTTCAACAACAATATGT+TGG - chr6_1:90719705-90719724 Msa0898060:CDS 25.0%
!! TTATGAATATAGTGGTAATG+TGG - chr6_1:90719797-90719816 Msa0898060:CDS 25.0%
!! GACTTTACTTTTGAAAGGAA+AGG + chr6_1:90717086-90717105 None:intergenic 30.0%
TCACATAGAAAGAGAAATAG+AGG - chr6_1:90717104-90717123 Msa0898060:three_prime_UTR 30.0%
ACACTTGAATCTCAACTTAT+AGG - chr6_1:90717135-90717154 Msa0898060:three_prime_UTR 30.0%
GAGAAACAGAGTTAGTTAAA+AGG + chr6_1:90717211-90717230 None:intergenic 30.0%
TCTAATCACTCTACTTAGTT+TGG + chr6_1:90717252-90717271 None:intergenic 30.0%
!!! TGGTGAGTTTTGGAATAAAA+TGG + chr6_1:90717304-90717323 None:intergenic 30.0%
!!! TAGTTTTGTTGGATGATGTT+AGG + chr6_1:90717375-90717394 None:intergenic 30.0%
TAACATAGAGACTTATCATG+AGG + chr6_1:90717549-90717568 None:intergenic 30.0%
GATAAGTCTCTATGTTATGT+AGG - chr6_1:90717552-90717571 Msa0898060:CDS 30.0%
CTTTCGAGAACAATTCTTAA+CGG - chr6_1:90717636-90717655 Msa0898060:CDS 30.0%
!! ACTCTTAATCTTGATGATGA+AGG + chr6_1:90717795-90717814 None:intergenic 30.0%
TAGTGATTCAAGCAATAACT+TGG - chr6_1:90717983-90718002 Msa0898060:CDS 30.0%
GCTTGAAAACAACAACAATA+AGG - chr6_1:90718031-90718050 Msa0898060:intron 30.0%
!! TTTTCTAGCATAGGTGAATT+AGG + chr6_1:90718098-90718117 None:intergenic 30.0%
!! GATAAACTGTTTTCTAGCAT+AGG + chr6_1:90718107-90718126 None:intergenic 30.0%
AAAGTTGTAATGAAGCAAGA+TGG - chr6_1:90718218-90718237 Msa0898060:intron 30.0%
! TGGTGATGTTAATGTGAATA+GGG - chr6_1:90718325-90718344 Msa0898060:intron 30.0%
CTAACTAATCTGACACATAT+TGG + chr6_1:90718735-90718754 None:intergenic 30.0%
TAGTGACATAGATGTATTTG+TGG + chr6_1:90718814-90718833 None:intergenic 30.0%
ACTGCTAATCTCAAAAACAT+AGG + chr6_1:90719090-90719109 None:intergenic 30.0%
TGTTCTCTATATTTGTACCT+TGG + chr6_1:90719287-90719306 None:intergenic 30.0%
AACATGTAACTTGAATCTTG+AGG + chr6_1:90719312-90719331 None:intergenic 30.0%
! TGAACAAATTGTTGTTGTTG+TGG + chr6_1:90719378-90719397 None:intergenic 30.0%
! TGAAATTGGAACTTGATTTG+TGG + chr6_1:90719433-90719452 None:intergenic 30.0%
TGAATTTGTGATTGTTGTGA+TGG + chr6_1:90719480-90719499 None:intergenic 30.0%
TATTAGAAGCTACCACATTA+GGG + chr6_1:90719590-90719609 None:intergenic 30.0%
! GTTCCATTTTGTGGTATTAT+TGG + chr6_1:90719615-90719634 None:intergenic 30.0%
CAAATGTTGAATTAGGGTTA+GGG + chr6_1:90719668-90719687 None:intergenic 30.0%
ACAAATGTTGAATTAGGGTT+AGG + chr6_1:90719669-90719688 None:intergenic 30.0%
!! TGTTGTTGAAATTGATTCGA+AGG + chr6_1:90719699-90719718 None:intergenic 30.0%
ACAACAAAATAATGCTCCTT+TGG - chr6_1:90719842-90719861 Msa0898060:CDS 30.0%
ATTATCTCCAGGAAATTGTT+GGG + chr6_1:90719925-90719944 None:intergenic 30.0%
AATCTGAATCCGATTTATAC+CGG + chr6_1:90719975-90719994 None:intergenic 30.0%
! AGAATACTGACTATCATACT+TGG + chr6_1:90720015-90720034 None:intergenic 30.0%
! CCATTAGAATTGGTGAGTTT+TGG + chr6_1:90717314-90717333 None:intergenic 35.0%
CCAAAACTCACCAATTCTAA+TGG - chr6_1:90717311-90717330 Msa0898060:CDS 35.0%
! TTTTGTTGGATGATGTTAGG+AGG + chr6_1:90717372-90717391 None:intergenic 35.0%
GTTTCATTAACATGTGATCG+TGG + chr6_1:90717444-90717463 None:intergenic 35.0%
AAGTCTCTATGTTATGTAGG+CGG - chr6_1:90717555-90717574 Msa0898060:CDS 35.0%
CGTTAAGAATTGTTCTCGAA+AGG + chr6_1:90717638-90717657 None:intergenic 35.0%
CATCTGATGTTACTGTAATG+AGG + chr6_1:90717710-90717729 None:intergenic 35.0%
! ATGATGCAAAATCTGAGACA+TGG - chr6_1:90717868-90717887 Msa0898060:CDS 35.0%
TTATTGCTTGAATCACTAGC+AGG + chr6_1:90717981-90718000 None:intergenic 35.0%
TTCATCTTTGACTCCTTCAA+TGG - chr6_1:90718130-90718149 Msa0898060:intron 35.0%
TCATCAACACAAACACGAAT+CGG + chr6_1:90718167-90718186 None:intergenic 35.0%
! GTTTGTGTTGATGAAAATGC+TGG - chr6_1:90718173-90718192 Msa0898060:intron 35.0%
!! TGTTGTTTCTTCTGCTAATG+TGG - chr6_1:90718247-90718266 Msa0898060:intron 35.0%
! GTGGTGATGTTAATGTGAAT+AGG - chr6_1:90718324-90718343 Msa0898060:intron 35.0%
GATGATGAGAGATCAGATTA+TGG - chr6_1:90718356-90718375 Msa0898060:intron 35.0%
TCAGATTATGGAGGACAAAT+TGG - chr6_1:90718368-90718387 Msa0898060:intron 35.0%
! GTGTAACATTGCTCTCTTTT+TGG - chr6_1:90718493-90718512 Msa0898060:intron 35.0%
AATTAGATGTCACTCGATGT+CGG - chr6_1:90718695-90718714 Msa0898060:intron 35.0%
TGTGGCAAAGCAATAATAGT+TGG + chr6_1:90718775-90718794 None:intergenic 35.0%
TATCATCAAGAACAAGTCCA+AGG - chr6_1:90719267-90719286 Msa0898060:CDS 35.0%
!! TGTTGATTTGGATCTGATTG+TGG + chr6_1:90719339-90719358 None:intergenic 35.0%
! ACAAATTGTTGTTGTTGTGG+TGG + chr6_1:90719375-90719394 None:intergenic 35.0%
TGGTGTATATAGTGAGTGTT+GGG + chr6_1:90719402-90719421 None:intergenic 35.0%
!! GAACTTGATTTGTGGATGTA+GGG + chr6_1:90719425-90719444 None:intergenic 35.0%
ATTTGTGATTGTTGTGATGG+TGG + chr6_1:90719477-90719496 None:intergenic 35.0%
ACATACACTGGATATTGTTG+TGG + chr6_1:90719507-90719526 None:intergenic 35.0%
CTATTAGAAGCTACCACATT+AGG + chr6_1:90719591-90719610 None:intergenic 35.0%
CTAATGTGGTAGCTTCTAAT+AGG - chr6_1:90719589-90719608 Msa0898060:CDS 35.0%
AGGCCAATAATACCACAAAA+TGG - chr6_1:90719609-90719628 Msa0898060:CDS 35.0%
! GCTTTATTAGGGTAAATTGG+TGG + chr6_1:90719639-90719658 None:intergenic 35.0%
! GGTGCTTTATTAGGGTAAAT+TGG + chr6_1:90719642-90719661 None:intergenic 35.0%
! TAGGGTTAGGTGCTTTATTA+GGG + chr6_1:90719650-90719669 None:intergenic 35.0%
! TTAGGGTTAGGTGCTTTATT+AGG + chr6_1:90719651-90719670 None:intergenic 35.0%
!! TGTGGTTGATGATGAAATTG+AGG + chr6_1:90719735-90719754 None:intergenic 35.0%
GCTACATTAATAGGAACTTG+TGG + chr6_1:90719753-90719772 None:intergenic 35.0%
TAACCATAATTGGTACCACT+AGG + chr6_1:90719780-90719799 None:intergenic 35.0%
! GAATATAGTGGTAATGTGGA+AGG - chr6_1:90719801-90719820 Msa0898060:CDS 35.0%
CATTATCTCCAGGAAATTGT+TGG + chr6_1:90719926-90719945 None:intergenic 35.0%
GTCAAATAGAACTTCACAAC+CGG - chr6_1:90719953-90719972 Msa0898060:five_prime_UTR 35.0%
ACTTCACAACCGGTATAAAT+CGG - chr6_1:90719963-90719982 Msa0898060:five_prime_UTR 35.0%
GAATAGCAGAGTGAAAACAG+GGG + chr6_1:90717189-90717208 None:intergenic 40.0%
GGAATAGCAGAGTGAAAACA+GGG + chr6_1:90717190-90717209 None:intergenic 40.0%
AGGAATAGCAGAGTGAAAAC+AGG + chr6_1:90717191-90717210 None:intergenic 40.0%
! TTTGGTGCAGAGTGAAAACA+GGG + chr6_1:90717234-90717253 None:intergenic 40.0%
TGGAATAAAATGGAACGGAG+CGG + chr6_1:90717294-90717313 None:intergenic 40.0%
TTGGATGATGTTAGGAGGAA+TGG + chr6_1:90717367-90717386 None:intergenic 40.0%
!!! TCGACTCAGGATAGTTTTGT+TGG + chr6_1:90717386-90717405 None:intergenic 40.0%
TCATTAACATGTGATCGTGG+TGG + chr6_1:90717441-90717460 None:intergenic 40.0%
AAGCTGGTACTTGAGAGTAA+AGG + chr6_1:90717667-90717686 None:intergenic 40.0%
AGGTTATCAAGATCTTCACG+AGG + chr6_1:90717690-90717709 None:intergenic 40.0%
ACCAGATACCACACTTTCAA+TGG - chr6_1:90717833-90717852 Msa0898060:CDS 40.0%
CCAGATACCACACTTTCAAT+GGG - chr6_1:90717834-90717853 Msa0898060:CDS 40.0%
AAGTGATCCCATTGAAAGTG+TGG + chr6_1:90717844-90717863 None:intergenic 40.0%
TTGATGCACTCAACAACTCA+GGG - chr6_1:90717895-90717914 Msa0898060:CDS 40.0%
TTGATGAAAATGCTGGTAGC+AGG - chr6_1:90718180-90718199 Msa0898060:intron 40.0%
TTCTTCTGCTAATGTGGCTA+TGG - chr6_1:90718253-90718272 Msa0898060:intron 40.0%
AATTCCTGCAGCAATGACAA+TGG - chr6_1:90718280-90718299 Msa0898060:intron 40.0%
GATGAGAGATCAGATTATGG+AGG - chr6_1:90718359-90718378 Msa0898060:intron 40.0%
TGAACAAGCTGCAATGGTAA+AGG + chr6_1:90718407-90718426 None:intergenic 40.0%
CTTGTAACTGAATCTGGTGA+AGG + chr6_1:90718458-90718477 None:intergenic 40.0%
CTTCACCAGATTCAGTTACA+AGG - chr6_1:90718456-90718475 Msa0898060:intron 40.0%
CCATACCTTGTAACTGAATC+TGG + chr6_1:90718464-90718483 None:intergenic 40.0%
CCAGATTCAGTTACAAGGTA+TGG - chr6_1:90718461-90718480 Msa0898060:intron 40.0%
CAGAGAGACGTAACATGATA+CGG + chr6_1:90719135-90719154 None:intergenic 40.0%
ATCATGTTACGTCTCTCTGT+CGG - chr6_1:90719136-90719155 Msa0898060:CDS 40.0%
! TGATTTGGATCTGATTGTGG+TGG + chr6_1:90719336-90719355 None:intergenic 40.0%
! GGTTGTTGGAGTTGTTGATT+TGG + chr6_1:90719351-90719370 None:intergenic 40.0%
! AATTGTTGTTGTTGTGGTGG+TGG + chr6_1:90719372-90719391 None:intergenic 40.0%
GTGGTGTATATAGTGAGTGT+TGG + chr6_1:90719403-90719422 None:intergenic 40.0%
!! GGAACTTGATTTGTGGATGT+AGG + chr6_1:90719426-90719445 None:intergenic 40.0%
ACACTGGATATTGTTGTGGA+TGG + chr6_1:90719503-90719522 None:intergenic 40.0%
CCAATAGGCATTACATACAC+TGG + chr6_1:90719519-90719538 None:intergenic 40.0%
CCAGTGTATGTAATGCCTAT+TGG - chr6_1:90719516-90719535 Msa0898060:CDS 40.0%
GGTTGTTGTGTAGATCCAAT+AGG + chr6_1:90719534-90719553 None:intergenic 40.0%
! ATTGGTGGAGTTCCATTTTG+TGG + chr6_1:90719624-90719643 None:intergenic 40.0%
GTTGAATTAGGGTTAGGGTT+AGG + chr6_1:90719663-90719682 None:intergenic 40.0%
CTAGGAGGAGCTACATTAAT+AGG + chr6_1:90719762-90719781 None:intergenic 40.0%
ATTAATGTAGCTCCTCCTAG+TGG - chr6_1:90719762-90719781 Msa0898060:CDS 40.0%
! GATTGGTACTGAGTAACCAA+AGG + chr6_1:90719861-90719880 None:intergenic 40.0%
! AGGAAATTGTTGGGAAGCAT+CGG + chr6_1:90719916-90719935 None:intergenic 40.0%
TTTGACCGATCGATCTTGAT+CGG - chr6_1:90720087-90720106 Msa0898060:five_prime_UTR 40.0%
TTGGTGCAGAGTGAAAACAG+GGG + chr6_1:90717233-90717252 None:intergenic 45.0%
!! GTTTGGTGCAGAGTGAAAAC+AGG + chr6_1:90717235-90717254 None:intergenic 45.0%
AGGGGTGGATCCATTAGAAT+TGG + chr6_1:90717324-90717343 None:intergenic 45.0%
GATGATGTTAGGAGGAATGG+TGG + chr6_1:90717364-90717383 None:intergenic 45.0%
TTAACATGTGATCGTGGTGG+TGG + chr6_1:90717438-90717457 None:intergenic 45.0%
AGAGACTTATCATGAGGACG+CGG + chr6_1:90717543-90717562 None:intergenic 45.0%
! CCCATTGAAAGTGTGGTATC+TGG + chr6_1:90717837-90717856 None:intergenic 45.0%
GTTGATGCACTCAACAACTC+AGG - chr6_1:90717894-90717913 Msa0898060:CDS 45.0%
AACTCAGGGATTCTCTCAAG+AGG - chr6_1:90717909-90717928 Msa0898060:CDS 45.0%
GGTGGCAAATTCTCCATTGA+AGG + chr6_1:90718146-90718165 None:intergenic 45.0%
TCAACACAAACACGAATCGG+TGG + chr6_1:90718164-90718183 None:intergenic 45.0%
TCAGCTGGAGTTGTTACTAG+TGG - chr6_1:90718305-90718324 Msa0898060:intron 45.0%
ACAAGCTGCAATGGTAAAGG+CGG + chr6_1:90718404-90718423 None:intergenic 45.0%
CTTGGTTGAACAAGCTGCAA+TGG + chr6_1:90718413-90718432 None:intergenic 45.0%
! CATTGCAGCTTGTTCAACCA+AGG - chr6_1:90718411-90718430 Msa0898060:intron 45.0%
CTTGTTCAACCAAGGACTAG+TGG - chr6_1:90718419-90718438 Msa0898060:intron 45.0%
! GGTGTGTCTAAGATGTGTTG+TGG + chr6_1:90718793-90718812 None:intergenic 45.0%
!! CTTGATTTGTGGATGTAGGG+TGG + chr6_1:90719422-90719441 None:intergenic 45.0%
!! GTGATTGTTGTGATGGTGGA+GGG + chr6_1:90719473-90719492 None:intergenic 45.0%
!! TGTGATTGTTGTGATGGTGG+AGG + chr6_1:90719474-90719493 None:intergenic 45.0%
CCATAATTGGTACCACTAGG+AGG + chr6_1:90719777-90719796 None:intergenic 45.0%
CCTCCTAGTGGTACCAATTA+TGG - chr6_1:90719774-90719793 Msa0898060:CDS 45.0%
GATGCTTCCCAACAATTTCC+TGG - chr6_1:90719915-90719934 Msa0898060:exon 45.0%
GACTGCTGAACATTATCTCC+AGG + chr6_1:90719936-90719955 None:intergenic 45.0%
ACTTGGAAATTCCGACTGCA+GGG + chr6_1:90719998-90720017 None:intergenic 45.0%
TACTTGGAAATTCCGACTGC+AGG + chr6_1:90719999-90720018 None:intergenic 45.0%
ACTAAGTGACTAGTGACTGC+AGG - chr6_1:90720121-90720140 Msa0898060:five_prime_UTR 45.0%
CTAAGTGACTAGTGACTGCA+GGG - chr6_1:90720122-90720141 Msa0898060:five_prime_UTR 45.0%
!!! TTTTTTTAATGATTAAAATT+TGG - chr6_1:90720179-90720198 Msa0898060:five_prime_UTR 5.0%
CAGGGGAGAAACAGAGTAAG+TGG + chr6_1:90717172-90717191 None:intergenic 50.0%
GTTAGGAGGAATGGTGGTTG+CGG + chr6_1:90717358-90717377 None:intergenic 50.0%
! GATAAGGACTCGATCGACTC+AGG + chr6_1:90717399-90717418 None:intergenic 50.0%
CTTCGTCTCATGTGCAGCTA+CGG - chr6_1:90717504-90717523 Msa0898060:CDS 50.0%
! TTCTCGAAAGGCGCGAACAT+AGG + chr6_1:90717626-90717645 None:intergenic 50.0%
CAAGATCTTCACGAGGAAGC+TGG + chr6_1:90717683-90717702 None:intergenic 50.0%
! AGAGGTGTGTCAGATTCAGC+AGG - chr6_1:90717927-90717946 Msa0898060:CDS 50.0%
GAAGCCATTGTCATTGCTGC+AGG + chr6_1:90718287-90718306 None:intergenic 50.0%
GCAATGACAATGGCTTCAGC+TGG - chr6_1:90718290-90718309 Msa0898060:intron 50.0%
! GTTCAACCAAGGACTAGTGG+TGG - chr6_1:90718422-90718441 Msa0898060:intron 50.0%
!! GTTGTTGTGGTGGTGGTTGT+TGG + chr6_1:90719365-90719384 None:intergenic 50.0%
!! GTGATGGTGGAGGGTAAACT+TGG + chr6_1:90719464-90719483 None:intergenic 50.0%
GGATTCAGATTCCCTGCAGT+CGG - chr6_1:90719984-90720003 Msa0898060:five_prime_UTR 50.0%
GACCACCGATCAAGATCGAT+CGG + chr6_1:90720095-90720114 None:intergenic 50.0%
CGGAGCGGAACAGAACAGAA+TGG + chr6_1:90717279-90717298 None:intergenic 55.0%
!! CTGTGGTGGTGGCGATGATA+AGG + chr6_1:90717415-90717434 None:intergenic 55.0%
GACTCCTTCCCTAATGTCCC+CGG - chr6_1:90717474-90717493 Msa0898060:CDS 55.0%
ATGAGACGAAGCTTGCCACC+GGG + chr6_1:90717495-90717514 None:intergenic 55.0%
CATGAGACGAAGCTTGCCAC+CGG + chr6_1:90717496-90717515 None:intergenic 55.0%
GTCTCATGTGCAGCTACGGA+GGG - chr6_1:90717508-90717527 Msa0898060:CDS 55.0%
TGACACCAGAATCGTGGTCG+TGG - chr6_1:90717578-90717597 Msa0898060:CDS 55.0%
CTCACACCACCACTAGTCCT+TGG + chr6_1:90718431-90718450 None:intergenic 55.0%
CAGCTGCAGGAGTCATGGAT+TGG + chr6_1:90719878-90719897 None:intergenic 55.0%
GACCGATCGATCTTGATCGG+TGG - chr6_1:90720090-90720109 Msa0898060:five_prime_UTR 55.0%
GTTGCGGCGGTGGAGATAAG+GGG + chr6_1:90717342-90717361 None:intergenic 60.0%
GGTTGCGGCGGTGGAGATAA+GGG + chr6_1:90717343-90717362 None:intergenic 60.0%
TGGTTGCGGCGGTGGAGATA+AGG + chr6_1:90717344-90717363 None:intergenic 60.0%
AGGAGGAATGGTGGTTGCGG+CGG + chr6_1:90717355-90717374 None:intergenic 60.0%
!! TGTGATCGTGGTGGTGGCTG+TGG + chr6_1:90717432-90717451 None:intergenic 60.0%
TCCTTCCCTAATGTCCCCGG+TGG - chr6_1:90717477-90717496 Msa0898060:CDS 60.0%
GCTTGCCACCGGGGACATTA+GGG + chr6_1:90717485-90717504 None:intergenic 60.0%
AGCTTGCCACCGGGGACATT+AGG + chr6_1:90717486-90717505 None:intergenic 60.0%
TGAGACGAAGCTTGCCACCG+GGG + chr6_1:90717494-90717513 None:intergenic 60.0%
CGTCTCATGTGCAGCTACGG+AGG - chr6_1:90717507-90717526 Msa0898060:CDS 60.0%
AGGCGGTGACACCAGAATCG+TGG - chr6_1:90717572-90717591 Msa0898060:CDS 60.0%
GCGATCCACGACCACGATTC+TGG + chr6_1:90717586-90717605 None:intergenic 60.0%
AGCAGCAGCTGCAGGAGTCA+TGG + chr6_1:90719883-90719902 None:intergenic 60.0%
AATGCTGCAGCAGCAGCTGC+AGG + chr6_1:90719891-90719910 None:intergenic 60.0%
AGGAATGGTGGTTGCGGCGG+TGG + chr6_1:90717352-90717371 None:intergenic 65.0%
!! GATCGTGGTGGTGGCTGTGG+TGG + chr6_1:90717429-90717448 None:intergenic 65.0%
GCCACCGGGGACATTAGGGA+AGG + chr6_1:90717481-90717500 None:intergenic 65.0%
GCGGCGGTGGAGATAAGGGG+TGG + chr6_1:90717339-90717358 None:intergenic 70.0%
!! CGTGGTGGTGGCTGTGGTGG+TGG + chr6_1:90717426-90717445 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 90716984 90720269 90716984 ID=Msa0898060;Name=Msa0898060
chr6_1 mRNA 90716984 90720269 90716984 ID=Msa0898060-mRNA-1;Parent=Msa0898060;Name=Msa0898060-mRNA-1;_AED=0.00;_eAED=0.00;_QI=346|1|1|1|1|1|2|289|635
chr6_1 exon 90716984 90718032 90716984 ID=Msa0898060-mRNA-1:exon:15472;Parent=Msa0898060-mRNA-1
chr6_1 exon 90718776 90720269 90718776 ID=Msa0898060-mRNA-1:exon:15471;Parent=Msa0898060-mRNA-1
chr6_1 five_prime_UTR 90719924 90720269 90719924 ID=Msa0898060-mRNA-1:five_prime_utr;Parent=Msa0898060-mRNA-1
chr6_1 CDS 90718776 90719923 90718776 ID=Msa0898060-mRNA-1:cds;Parent=Msa0898060-mRNA-1
chr6_1 CDS 90717273 90718032 90717273 ID=Msa0898060-mRNA-1:cds;Parent=Msa0898060-mRNA-1
chr6_1 three_prime_UTR 90716984 90717272 90716984 ID=Msa0898060-mRNA-1:three_prime_utr;Parent=Msa0898060-mRNA-1
Gene Sequence

>Msa0898060

ATGGATCCACCCCTTATCTCCACCGCCGCAACCACCATTCCTCCTAACATCATCCAACAAAACTATCCTGAGTCGATCGAGTCCTTATCATCGCCACCACCACAGCCACCACCACGATCACATGTTAATGAAACAATGAACGACGACTCCTTCCCTAATGTCCCCGGTGGCAAGCTTCGTCTCATGTGCAGCTACGGAGGGCACATAATGCCGCGTCCTCATGATAAGTCTCTATGTTATGTAGGCGGTGACACCAGAATCGTGGTCGTGGATCGCAGTTCTTCTCTGAAAGACCTATGTTCGCGCCTTTCGAGAACAATTCTTAACGGAAGATCCTTTACTCTCAAGTACCAGCTTCCTCGTGAAGATCTTGATAACCTCATTACAGTAACATCAGATGAAGATCTTGATAACATGATTGAAGAATATGATCGTATAGCATCTGCATCTTCTACAATGAAACCTTCATCATCAAGATTAAGAGTGTTTTTGTTCTTCACAAAACCAGATACCACACTTTCAATGGGATCACTTCTTGATGATGCAAAATCTGAGACATGGTTTGTTGATGCACTCAACAACTCAGGGATTCTCTCAAGAGGTGTGTCAGATTCAGCAGGAGATTCTTTTGTGAATCTTGATAATGTTCCTGCTAGTGATTCAAGCAATAACTTGGAATCTCAAGTAGAATCATTGTCTCTGCTTGAAAACAACAACAATAAGGTTAAGAATGTGTTTGATAATGTTAATGCTGTGAATTCAACACCTAATTCACCTATGCTAGAAAACAGTTTATCATCTTCATCTTTGACTCCTTCAATGGAGAATTTGCCACCGATTCGTGTTTGTGTTGATGAAAATGCTGGTAGCAGGCTTCAACAAGAGAACAAAGTTGTAATGAAGCAAGATGGTGAGTTTGTTGTTTCTTCTGCTAATGTGGCTATGGCTGCAATTCCTGCAGCAATGACAATGGCTTCAGCTGGAGTTGTTACTAGTGGTGATGTTAATGTGAATAGGGTTGTTTCTGATGATGAGAGATCAGATTATGGAGGACAAATTGGATCTCGAAAACCGCCTTTACCATTGCAGCTTGTTCAACCAAGGACTAGTGGTGGTGTGAGTCTTCCTTCACCAGATTCAGTTACAAGTGATAGCAGTAGTATTGCATCTACAAATTCTTTCTCCAAGATTATTTATCATCAAGAACAAGTCCAAGGTACAAATATAGAGAACAAACCTCAAGATTCAAGTTACATGTTACCACCACAATCAGATCCAAATCAACAACTCCAACAACCACCACCACAACAACAACAATTTGTTCATCCCAACACTCACTATATACACCACCCTACATCCACAAATCAAGTTCCAATTTCATCATATTACCAAGTTTACCCTCCACCATCACAACAATCACAAATTCACCATCCACAACAATATCCAGTGTATGTAATGCCTATTGGATCTACACAACAACCATATAACATGACATTACAACATAATATAAATGACCCTAATGTGGTAGCTTCTAATAGGCCAATAATACCACAAAATGGAACTCCACCAATTTACCCTAATAAAGCACCTAACCCTAACCCTAATTCAACATTTGTTCAAGTACCTTCGAATCAATTTCAACAACAATATGTTGGTATGCCTCAATTTCATCATCAACCACAAGTTCCTATTAATGTAGCTCCTCCTAGTGGTACCAATTATGGTTATGAATATAGTGGTAATGTGGAAGGTCAAGTGTACTATACTCAACAACAAAATAATGCTCCTTTGGTTACTCAGTACCAATCCATGACTCCTGCAGCTGCTGCTGCAGCATTATCCGATGCTTCCCAACAATTTCCTGGAGATAATGTTCAGCAGTCAAATAGAACTTCACAACCGGTATAA
Protein sequence

>Msa0898060

MDPPLISTAATTIPPNIIQQNYPESIESLSSPPPQPPPRSHVNETMNDDSFPNVPGGKLRLMCSYGGHIMPRPHDKSLCYVGGDTRIVVVDRSSSLKDLCSRLSRTILNGRSFTLKYQLPREDLDNLITVTSDEDLDNMIEEYDRIASASSTMKPSSSRLRVFLFFTKPDTTLSMGSLLDDAKSETWFVDALNNSGILSRGVSDSAGDSFVNLDNVPASDSSNNLESQVESLSLLENNNNKVKNVFDNVNAVNSTPNSPMLENSLSSSSLTPSMENLPPIRVCVDENAGSRLQQENKVVMKQDGEFVVSSANVAMAAIPAAMTMASAGVVTSGDVNVNRVVSDDERSDYGGQIGSRKPPLPLQLVQPRTSGGVSLPSPDSVTSDSSSIASTNSFSKIIYHQEQVQGTNIENKPQDSSYMLPPQSDPNQQLQQPPPQQQQFVHPNTHYIHHPTSTNQVPISSYYQVYPPPSQQSQIHHPQQYPVYVMPIGSTQQPYNMTLQHNINDPNVVASNRPIIPQNGTPPIYPNKAPNPNPNSTFVQVPSNQFQQQYVGMPQFHHQPQVPINVAPPSGTNYGYEYSGNVEGQVYYTQQQNNAPLVTQYQSMTPAAAAAALSDASQQFPGDNVQQSNRTSQPV*