AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0924490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0924490 MtrunA17_Chr6g0483611 95.618 639 26 1 1 637 1 639 0.0 1111
Msa0924490 MtrunA17_Chr8g0392371 47.887 639 240 29 22 637 20 588 8.14e-135 407
Msa0924490 MtrunA17_Chr1g0209151 43.434 396 164 15 3 359 14 388 1.68e-71 245
Msa0924490 MtrunA17_Chr4g0048541 42.688 253 119 11 58 298 28 266 1.39e-40 153
Msa0924490 MtrunA17_Chr2g0305141 44.509 173 73 7 38 200 146 305 9.03e-30 126
Msa0924490 MtrunA17_Chr2g0279951 50.926 108 48 2 58 165 43 145 5.12e-29 120
Msa0924490 MtrunA17_Chr4g0065211 38.922 167 83 7 42 201 139 293 3.09e-26 115
Msa0924490 MtrunA17_Chr4g0049441 46.429 112 53 3 58 167 38 144 8.16e-26 110
Msa0924490 MtrunA17_Chr6g0461841 43.382 136 67 4 31 164 162 289 1.36e-24 109
Msa0924490 MtrunA17_Chr2g0310761 40.690 145 76 4 58 200 168 304 6.60e-24 107
Msa0924490 MtrunA17_Chr2g0310781 39.610 154 82 4 59 210 151 295 2.62e-23 105
Msa0924490 MtrunA17_Chr2g0277031 40.476 126 63 3 44 169 2 115 1.63e-22 99.0
Msa0924490 MtrunA17_Chr1g0196631 46.729 107 50 3 58 164 193 292 2.63e-22 102
Msa0924490 MtrunA17_Chr5g0428011 46.789 109 52 3 58 165 26 129 4.74e-22 98.6
Msa0924490 MtrunA17_Chr8g0357611 37.255 153 87 4 59 210 179 323 3.49e-20 95.9
Msa0924490 MtrunA17_Chr4g0072741 42.254 142 71 5 53 193 46 177 1.41e-19 93.6
Msa0924490 MtrunA17_Chr5g0412711 46.000 100 53 1 55 154 12 110 1.93e-19 87.8
Msa0924490 MtrunA17_Chr3g0117061 38.843 121 66 3 55 175 5 117 9.51e-19 85.1
Msa0924490 MtrunA17_Chr5g0428071 35.374 147 80 4 56 193 40 180 3.65e-18 87.4
Msa0924490 MtrunA17_Chr5g0440771 42.857 112 54 4 58 165 3 108 1.34e-17 81.6
Msa0924490 MtrunA17_Chr4g0058551 45.263 95 50 1 55 149 5 97 7.98e-16 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0924490 AT2G01190.1 37.587 721 316 25 18 637 33 720 1.06e-99 320
Msa0924490 AT3G18230.1 41.590 654 266 23 54 637 59 666 6.86e-96 309
Msa0924490 AT4G05150.1 43.333 150 61 5 58 193 58 197 5.94e-32 130
Msa0924490 AT1G25300.1 52.778 108 42 2 58 165 10 108 1.36e-28 115
Msa0924490 AT5G09620.2 50.435 115 50 2 58 169 39 149 2.01e-28 119
Msa0924490 AT5G09620.1 50.435 115 50 2 58 169 39 149 2.41e-28 120
Msa0924490 AT5G64430.1 44.521 146 69 3 58 199 44 181 4.22e-27 115
Msa0924490 AT5G57610.1 44.203 138 69 4 58 194 23 153 2.77e-26 115
Msa0924490 AT5G16220.1 37.288 177 73 3 57 198 29 202 2.70e-25 110
Msa0924490 AT1G16270.1 35.976 164 92 3 57 214 163 319 6.95e-24 107
Msa0924490 AT1G16270.2 35.976 164 92 3 57 214 163 319 6.95e-24 107
Msa0924490 AT1G16270.3 35.976 164 92 3 57 214 163 319 6.95e-24 107
Msa0924490 AT5G49920.1 39.597 149 77 3 58 206 9 144 1.51e-23 101
Msa0924490 AT3G46920.2 38.125 160 89 4 58 214 74 226 1.79e-23 106
Msa0924490 AT3G46920.1 38.065 155 86 4 58 209 8 155 1.86e-23 106
Msa0924490 AT1G04700.3 44.882 127 59 3 38 164 105 220 5.23e-23 104
Msa0924490 AT1G04700.1 44.882 127 59 3 38 164 105 220 5.72e-23 104
Msa0924490 AT1G04700.2 44.882 127 59 3 38 164 105 220 5.72e-23 104
Msa0924490 AT3G26510.1 46.789 109 49 3 59 164 10 112 1.08e-21 94.0
Msa0924490 AT3G26510.4 46.789 109 49 3 59 164 10 112 1.08e-21 94.0
Msa0924490 AT3G26510.3 46.789 109 49 3 59 164 10 112 1.08e-21 94.0
Msa0924490 AT3G26510.2 46.789 109 49 3 59 164 10 112 1.08e-21 94.0
Msa0924490 AT3G26510.6 46.789 109 49 3 59 164 10 112 1.08e-21 94.0
Msa0924490 AT3G26510.5 46.789 109 49 3 59 164 10 112 1.08e-21 94.0
Msa0924490 AT2G35050.1 41.667 108 55 2 58 165 176 275 6.32e-21 98.6
Msa0924490 AT2G35050.2 41.667 108 55 2 58 165 176 275 6.32e-21 98.6
Msa0924490 AT3G48240.1 50.000 88 42 1 59 146 14 99 8.40e-20 87.8
Msa0924490 AT3G24715.1 42.593 108 55 2 58 165 175 275 6.38e-19 92.0
Msa0924490 AT3G24715.3 42.593 108 55 2 58 165 175 275 6.38e-19 92.0
Msa0924490 AT3G24715.2 42.593 108 55 2 58 165 175 275 6.38e-19 92.0
Msa0924490 AT1G70640.1 47.253 91 47 1 59 149 8 97 3.84e-18 82.8
Msa0924490 AT5G63130.1 47.872 94 47 1 56 149 12 103 7.76e-15 73.9
Msa0924490 AT5G63130.2 47.872 94 47 1 56 149 12 103 7.76e-15 73.9

Find 178 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGGGTTAGGTGCTTTATT+AGG 0.142649 6_2:+66440654 None:intergenic
ACTTGAACAAATGTTGAATT+AGG 0.181694 6_2:+66440630 None:intergenic
AGATTCTTTATTTGCATATA+AGG 0.236383 6_2:-66443299 Msa0924490:five_prime_UTR
CCATTAGAATTGGTGAGTTT+TGG 0.242966 6_2:+66443032 None:intergenic
ACTTGGTAATATGATGAAAT+TGG 0.265919 6_2:+66440858 None:intergenic
CTTTCGAGAACAATTCTTAA+TGG 0.281376 6_2:-66442707 Msa0924490:CDS
TGTTGCATTGTCATGTTATA+TGG 0.281590 6_2:+66440750 None:intergenic
ACACTTGAATCTCAACTTAT+AGG 0.282398 6_2:-66443208 Msa0924490:five_prime_UTR
CCTCCTAGTGGTACTAATTA+TGG 0.283273 6_2:-66440528 Msa0924490:CDS
GAGAAACAGAGTTAGTTAAA+AGG 0.288036 6_2:+66443135 None:intergenic
CTATTAGAAGCTACCACATT+AGG 0.295088 6_2:+66440714 None:intergenic
TAGGGTTAGGTGCTTTATTA+GGG 0.295696 6_2:+66440655 None:intergenic
CTAGGAGGAGCTACATTAAT+AGG 0.313944 6_2:+66440543 None:intergenic
GGTGCTTTATTAGGGTAAAT+TGG 0.314952 6_2:+66440663 None:intergenic
ACAAATGTTGAATTAGGGTT+AGG 0.325195 6_2:+66440636 None:intergenic
AGCTTGCCACCGGGGACATT+AGG 0.326160 6_2:+66442860 None:intergenic
GGTTGCGGCGGTGGAGATAA+GGG 0.328130 6_2:+66443003 None:intergenic
CTTGAACAAATGTTGAATTA+GGG 0.329171 6_2:+66440631 None:intergenic
GCGATCCACGACCACGATTC+TGG 0.330991 6_2:+66442760 None:intergenic
TTCATCTTTGTCTCCTTCAA+TGG 0.340866 6_2:-66442213 Msa0924490:CDS
CCAAAACTCACCAATTCTAA+TGG 0.345127 6_2:-66443032 Msa0924490:exon
TCATCGACGCGAACACGAAT+TGG 0.346825 6_2:+66442179 None:intergenic
GATGATGAGAGATCAGATTA+TGG 0.354406 6_2:-66441981 Msa0924490:CDS
TCTAATCACTCTACTTAGTT+TGG 0.357265 6_2:+66443094 None:intergenic
CCAGTGTATGTAATGCCTAT+TGG 0.357269 6_2:-66440786 Msa0924490:CDS
TTCTTGATGATAAATAATCT+TGG 0.357557 6_2:+66441046 None:intergenic
CCATACCTTGTAACTGAATC+TGG 0.358887 6_2:+66441876 None:intergenic
AGGAATGGTGGTTGCGGCGG+TGG 0.359388 6_2:+66442994 None:intergenic
CCCATTGAAAGTGTGGTATC+TGG 0.360704 6_2:+66442509 None:intergenic
AGGCCAATAATACCACAAAA+TGG 0.366926 6_2:-66440693 Msa0924490:CDS
GTTGTTGTGGTGGTGGTTGT+TGG 0.367405 6_2:+66440940 None:intergenic
CATTATCTCCAGAAAATTGC+TGG 0.372749 6_2:+66440379 None:intergenic
ACTTGAAAACAATAACAATA+AGG 0.375409 6_2:-66442312 Msa0924490:CDS
AATATGTTTATTCACTAAGT+TGG 0.376692 6_2:-66440157 Msa0924490:three_prime_UTR
ACAGCAAAATAATGCTCCTT+TGG 0.379173 6_2:-66440460 Msa0924490:CDS
CTAATGTGGTAGCTTCTAAT+AGG 0.379802 6_2:-66440713 Msa0924490:CDS
ACCAGATACCACACTTTCAA+TGG 0.385542 6_2:-66442510 Msa0924490:CDS
GAAGCCATTGTTAATGTTGC+AGG 0.394087 6_2:+66442059 None:intergenic
TGGTTGCGGCGGTGGAGATA+AGG 0.395600 6_2:+66443002 None:intergenic
GGTTGTTGGAGTTGTTGATT+TGG 0.402867 6_2:+66440954 None:intergenic
AGGAATAGCAGAGTGAAAAC+AGG 0.407587 6_2:+66443155 None:intergenic
GTTTGGTGCAGAGTGAAAAC+AGG 0.409676 6_2:+66443111 None:intergenic
CGTGGTGGTGGCTGTGGTGG+TGG 0.411827 6_2:+66442920 None:intergenic
TGTTGTTGAAATTGATTTGA+AGG 0.417721 6_2:+66440606 None:intergenic
TTCTTCTGCTAATGTGGCTA+TGG 0.422627 6_2:-66442090 Msa0924490:CDS
CAAATGTTGAATTAGGGTTA+GGG 0.423748 6_2:+66440637 None:intergenic
TCACATAGAAAGAGAAATAG+AGG 0.427157 6_2:-66443239 Msa0924490:five_prime_UTR
TACTTGGAAATTCCGACTGC+AGG 0.430425 6_2:+66440306 None:intergenic
TCAGATTATGGAGGACTAAT+CGG 0.430519 6_2:-66441969 Msa0924490:CDS
TATTAGAAGCTACCACATTA+GGG 0.432131 6_2:+66440715 None:intergenic
TGTTCTCTATATTTGTACCT+TGG 0.440592 6_2:+66441018 None:intergenic
AGCTGGTACTTGAGAGTAAA+GGG 0.442320 6_2:+66442680 None:intergenic
AATGCTGCAGCAGCAGCTGC+AGG 0.444841 6_2:+66440414 None:intergenic
GTGGTGATGTGAATGTGAAT+AGG 0.446979 6_2:-66442013 Msa0924490:CDS
TGTTGATTTGGATCTGATTG+TGG 0.447760 6_2:+66440966 None:intergenic
AGGGGTGGATCCATTAGAAT+TGG 0.451765 6_2:+66443022 None:intergenic
TGGTGATGTGAATGTGAATA+GGG 0.453479 6_2:-66442012 Msa0924490:CDS
CTTCAACAAGAGAACAAAGT+TGG 0.453951 6_2:-66442140 Msa0924490:CDS
GAATTTGATTTGTGGATGTA+GGG 0.454133 6_2:+66440880 None:intergenic
GTTGAATTAGGGTTAGGGTT+AGG 0.457137 6_2:+66440642 None:intergenic
AATTGTTGTTGTTGTGGTGG+TGG 0.458277 6_2:+66440933 None:intergenic
ACTTCACAGCCGGTATAAAT+CGG 0.466064 6_2:-66440339 Msa0924490:exon
GTTGCGGCGGTGGAGATAAG+GGG 0.466311 6_2:+66443004 None:intergenic
CTTCACCAGATTCAGTTACA+AGG 0.472765 6_2:-66441881 Msa0924490:intron
TGAATTTGTGATTGTTGTGA+TGG 0.476153 6_2:+66440825 None:intergenic
TGAAATTGGAATTTGATTTG+TGG 0.480296 6_2:+66440872 None:intergenic
TGGAATACTAAGACAAAAGC+TGG 0.482124 6_2:-66443366 None:intergenic
GGTGGCAAATTCTCCATTGA+AGG 0.487486 6_2:+66442200 None:intergenic
TGTTGTTTCTTCTGCTAATG+TGG 0.488333 6_2:-66442096 Msa0924490:CDS
GGAATTTGATTTGTGGATGT+AGG 0.489088 6_2:+66440879 None:intergenic
TTGGATGATGTTAGGAGGAA+TGG 0.492279 6_2:+66442979 None:intergenic
CTGTGGTGGTGGCGATGATA+AGG 0.492297 6_2:+66442931 None:intergenic
ATTTGTGATTGTTGTGATGG+TGG 0.494094 6_2:+66440828 None:intergenic
GGTTGTTGTGTAGATCCAAT+AGG 0.494757 6_2:+66440771 None:intergenic
CAGGGGAGAAACAGAGTAAG+TGG 0.496252 6_2:+66443174 None:intergenic
GATAAGGACTCGATCGACTC+AGG 0.496681 6_2:+66442947 None:intergenic
AATTATGGTTATGAATATAG+TGG 0.496876 6_2:-66440513 Msa0924490:CDS
CATCTGATGTTACTGTAATG+AGG 0.497110 6_2:+66442636 None:intergenic
GTGATGGTGGAGGGTAAACT+TGG 0.498230 6_2:+66440841 None:intergenic
TGAACAAATTGTTGTTGTTG+TGG 0.501182 6_2:+66440927 None:intergenic
CATGAGACGAAGCTTGCCAC+CGG 0.506663 6_2:+66442850 None:intergenic
CCAGATACCACACTTTCAAT+GGG 0.510170 6_2:-66442509 Msa0924490:CDS
CTTCGTCTCATGTGCAGCTA+CGG 0.512697 6_2:-66442839 Msa0924490:CDS
GATAAGTCTCTATGTTATGT+AGG 0.513509 6_2:-66442791 Msa0924490:CDS
TGACACCAGAATCGTGGTCG+TGG 0.514574 6_2:-66442765 Msa0924490:CDS
TCGATGAAAATGCTGGTAGC+AGG 0.517305 6_2:-66442163 Msa0924490:CDS
TTCTCGAAAGGCGCGAACAT+AGG 0.519863 6_2:+66442720 None:intergenic
ACATTAACAATGGCTTCAGC+TGG 0.524092 6_2:-66442053 Msa0924490:CDS
CTCACACCACCACTAGTCCT+TGG 0.525251 6_2:+66441909 None:intergenic
CGTCTCATGTGCAGCTACGG+AGG 0.527353 6_2:-66442836 Msa0924490:CDS
GTGGTGTATATAGTGAGTGT+TGG 0.528585 6_2:+66440902 None:intergenic
AGAGGTGTGTCAGATTCAGC+AGG 0.528641 6_2:-66442416 Msa0924490:CDS
TGGTGTATATAGTGAGTGTT+GGG 0.532795 6_2:+66440903 None:intergenic
CATTAAGAATTGTTCTCGAA+AGG 0.534712 6_2:+66442708 None:intergenic
TGTGATCGTGGTGGTGGCTG+TGG 0.535147 6_2:+66442914 None:intergenic
TGAACAAGCTGCAATGGTAA+AGG 0.535312 6_2:+66441933 None:intergenic
AGAATACTGACTATTATACT+TGG 0.537358 6_2:+66440290 None:intergenic
CAATTTCAACAACAATATGT+TGG 0.538930 6_2:-66440597 Msa0924490:CDS
CAAGATCTTCATGAGGAAGC+TGG 0.541665 6_2:+66442663 None:intergenic
ATGAGACGAAGCTTGCCACC+GGG 0.542054 6_2:+66442851 None:intergenic
GATCGTGGTGGTGGCTGTGG+TGG 0.546440 6_2:+66442917 None:intergenic
TTATTGCTTGAATCACTAGC+AGG 0.547203 6_2:+66442365 None:intergenic
ACTAAGTGACTAGTGACTGC+AGG 0.548513 6_2:-66440181 Msa0924490:three_prime_UTR
TAGTGATTCAAGCAATAACT+TGG 0.550481 6_2:-66442360 Msa0924490:CDS
TTTGACCGATCGATCTTGAT+CGG 0.550838 6_2:-66440215 Msa0924490:three_prime_UTR
GTTGATGCACTCAACAACTC+AGG 0.551095 6_2:-66442449 Msa0924490:CDS
GTCAAATAGAACTTCACAGC+CGG 0.552582 6_2:-66440349 Msa0924490:CDS
AGGAGGAATGGTGGTTGCGG+CGG 0.553526 6_2:+66442991 None:intergenic
GTTAGGAGGAATGGTGGTTG+CGG 0.554956 6_2:+66442988 None:intergenic
TGTGATTGTTGTGATGGTGG+AGG 0.556066 6_2:+66440831 None:intergenic
GTGATTGTTGTGATGGTGGA+GGG 0.558817 6_2:+66440832 None:intergenic
TTAACATGTGATCGTGGTGG+TGG 0.560719 6_2:+66442908 None:intergenic
AGCAGCAGCTGCAGGAGTCA+TGG 0.562009 6_2:+66440422 None:intergenic
TTGATGCACTCAACAACTCA+GGG 0.562066 6_2:-66442448 Msa0924490:CDS
GTCTCATGTGCAGCTACGGA+GGG 0.562228 6_2:-66442835 Msa0924490:CDS
AAGCTGGTACTTGAGAGTAA+AGG 0.565630 6_2:+66442679 None:intergenic
TTTGATTTGTGGATGTAGGG+TGG 0.566090 6_2:+66440883 None:intergenic
GCTTTATTAGGGTAAATTGG+TGG 0.566463 6_2:+66440666 None:intergenic
CTTGGTTGAACAAGCTGCAA+TGG 0.570036 6_2:+66441927 None:intergenic
AATCTGAATCCGATTTATAC+CGG 0.570252 6_2:+66440330 None:intergenic
TTGGAATGAAGCAAGATGGT+GGG 0.571599 6_2:-66442121 Msa0924490:CDS
TGTGGTTGATGATGAAATTG+AGG 0.571680 6_2:+66440570 None:intergenic
ACTTGGAAATTCCGACTGCA+GGG 0.571935 6_2:+66440307 None:intergenic
GACTCCTTCCCTAATGTCCC+CGG 0.573625 6_2:-66442869 Msa0924490:CDS
GAATATAGTGGTAATGTGGA+AGG 0.576884 6_2:-66440501 Msa0924490:CDS
CCAATAGGCATTACATACAC+TGG 0.577687 6_2:+66440786 None:intergenic
CTTGTAACTGAATCTGGTGA+AGG 0.582351 6_2:+66441882 None:intergenic
GACCACCGATCAAGATCGAT+CGG 0.585863 6_2:+66440210 None:intergenic
ACAAATTGTTGTTGTTGTGG+TGG 0.586159 6_2:+66440930 None:intergenic
CTTGTTCAACCAAGGACTAG+TGG 0.587169 6_2:-66441918 Msa0924490:CDS
TCGACGCGAACACGAATTGG+TGG 0.592523 6_2:+66442182 None:intergenic
ATTATCTCCAGAAAATTGCT+GGG 0.594343 6_2:+66440380 None:intergenic
AAGTGATCCCATTGAAAGTG+TGG 0.597227 6_2:+66442502 None:intergenic
AACATGTAACTTGAATCTTG+AGG 0.598939 6_2:+66440993 None:intergenic
GTATTCTGATAGAGATTGAA+CGG 0.600860 6_2:-66440274 Msa0924490:three_prime_UTR
GCGGCGGTGGAGATAAGGGG+TGG 0.603325 6_2:+66443007 None:intergenic
GACCGATCGATCTTGATCGG+TGG 0.603894 6_2:-66440212 Msa0924490:three_prime_UTR
TGATTTGGATCTGATTGTGG+TGG 0.606936 6_2:+66440969 None:intergenic
ACATACACTGGATATTGTTG+TGG 0.607055 6_2:+66440798 None:intergenic
GTTCGCGTCGATGAAAATGC+TGG 0.607616 6_2:-66442170 Msa0924490:CDS
GGATTCAGATTCCCTGCAGT+CGG 0.609652 6_2:-66440318 Msa0924490:three_prime_UTR
GGAATAGCAGAGTGAAAACA+GGG 0.611692 6_2:+66443156 None:intergenic
CGGAGCGGAACAGAACAGAA+TGG 0.616944 6_2:+66443067 None:intergenic
GCTACATTAATAGGAACTTG+TGG 0.617987 6_2:+66440552 None:intergenic
TAATATAAATGACCCTAATG+TGG 0.618458 6_2:-66440727 Msa0924490:CDS
CATTGCAGCTTGTTCAACCA+AGG 0.622441 6_2:-66441926 Msa0924490:CDS
AACTCAGGGATTCTCTCAAG+AGG 0.622550 6_2:-66442434 Msa0924490:CDS
AATTCCTGCAACATTAACAA+TGG 0.624548 6_2:-66442063 Msa0924490:CDS
GTTGGAATGAAGCAAGATGG+TGG 0.626927 6_2:-66442122 Msa0924490:CDS
GATGATGTTAGGAGGAATGG+TGG 0.629860 6_2:+66442982 None:intergenic
AAAGTTGGAATGAAGCAAGA+TGG 0.635123 6_2:-66442125 Msa0924490:CDS
TTATGAATATAGTGGTAATG+TGG 0.637729 6_2:-66440505 Msa0924490:CDS
CTAAGTGACTAGTGACTGCA+GGG 0.638083 6_2:-66440180 Msa0924490:three_prime_UTR
TTTGGTGCAGAGTGAAAACA+GGG 0.643559 6_2:+66443112 None:intergenic
ACACTGGATATTGTTGTGGA+TGG 0.644950 6_2:+66440802 None:intergenic
TATCATCAAGAACAAGTCCA+AGG 0.646741 6_2:-66441035 Msa0924490:CDS
GTTTCATTAACATGTGATCG+TGG 0.649887 6_2:+66442902 None:intergenic
GCCACCGGGGACATTAGGGA+AGG 0.653433 6_2:+66442865 None:intergenic
GATTGATATTGAGTAACCAA+AGG 0.659965 6_2:+66440444 None:intergenic
ACAAGCTGCAATGGTAAAGG+CGG 0.660310 6_2:+66441936 None:intergenic
TAACATAGAGACTTATCATG+AGG 0.662427 6_2:+66442797 None:intergenic
ATGATGCAAAATCTGAGACA+TGG 0.663147 6_2:-66442475 Msa0924490:CDS
TGGAATAAAATGGAACGGAG+CGG 0.664354 6_2:+66443052 None:intergenic
GGAGTTGTTACTGTTACTAG+TGG 0.668781 6_2:-66442032 Msa0924490:CDS
GATGAGAGATCAGATTATGG+AGG 0.672016 6_2:-66441978 Msa0924490:CDS
ATTAATGTAGCTCCTCCTAG+TGG 0.674238 6_2:-66440540 Msa0924490:CDS
AAGTCTCTATGTTATGTAGG+CGG 0.674337 6_2:-66442788 Msa0924490:CDS
GTTCAACCAAGGACTAGTGG+TGG 0.681531 6_2:-66441915 Msa0924490:CDS
AGGCGGTGACACCAGAATCG+TGG 0.682815 6_2:-66442771 Msa0924490:CDS
TCCTTCCCTAATGTCCCCGG+TGG 0.690061 6_2:-66442866 Msa0924490:CDS
AGAGACTTATCATGAGGACG+CGG 0.691797 6_2:+66442803 None:intergenic
CCATAATTAGTACCACTAGG+AGG 0.694247 6_2:+66440528 None:intergenic
TGAGACGAAGCTTGCCACCG+GGG 0.695282 6_2:+66442852 None:intergenic
AGGTTATCAAGATCTTCATG+AGG 0.698968 6_2:+66442656 None:intergenic
TAACCATAATTAGTACCACT+AGG 0.707891 6_2:+66440525 None:intergenic
TCATTAACATGTGATCGTGG+TGG 0.712353 6_2:+66442905 None:intergenic
GAATAGCAGAGTGAAAACAG+GGG 0.755698 6_2:+66443157 None:intergenic
TTGGTGCAGAGTGAAAACAG+GGG 0.854008 6_2:+66443113 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTCTATAGAAAAGT+AGG + chr6_2:66443319-66443338 None:intergenic 15.0%
!!! AGATTCTTTATTTGCATATA+AGG - chr6_2:66440114-66440133 Msa0924490:three_prime_UTR 20.0%
!! ACTTGAAAACAATAACAATA+AGG - chr6_2:66441101-66441120 Msa0924490:intron 20.0%
!! AGAAAACAAATTATGTTAAG+TGG - chr6_2:66441680-66441699 Msa0924490:intron 20.0%
!! GAAAACAAATTATGTTAAGT+GGG - chr6_2:66441681-66441700 Msa0924490:intron 20.0%
!! TACTAACATATATGTATTTG+TGG + chr6_2:66441872-66441891 None:intergenic 20.0%
!!! TTCTTGATGATAAATAATCT+TGG + chr6_2:66442370-66442389 None:intergenic 20.0%
!! AATTATGGTTATGAATATAG+TGG - chr6_2:66442900-66442919 Msa0924490:CDS 20.0%
!! AATATGTTTATTCACTAAGT+TGG - chr6_2:66443256-66443275 Msa0924490:five_prime_UTR 20.0%
!!! TATGTGACTTTACTTTTGAA+AGG + chr6_2:66440161-66440180 None:intergenic 25.0%
!!! AGTTTTGGAATAAAATGGAA+CGG + chr6_2:66440369-66440388 None:intergenic 25.0%
! ATGTTAAGTGGGATAAAATT+TGG - chr6_2:66441692-66441711 Msa0924490:intron 25.0%
!!! TCACGAACTTTTCTAAAATT+AGG - chr6_2:66441735-66441754 Msa0924490:intron 25.0%
! AACTAATCTGACACTTATAT+TGG + chr6_2:66441791-66441810 None:intergenic 25.0%
!!! TGAAATTGGAATTTGATTTG+TGG + chr6_2:66442544-66442563 None:intergenic 25.0%
!! ACTTGGTAATATGATGAAAT+TGG + chr6_2:66442558-66442577 None:intergenic 25.0%
! TAATATAAATGACCCTAATG+TGG - chr6_2:66442686-66442705 Msa0924490:CDS 25.0%
! CTTGAACAAATGTTGAATTA+GGG + chr6_2:66442785-66442804 None:intergenic 25.0%
! ACTTGAACAAATGTTGAATT+AGG + chr6_2:66442786-66442805 None:intergenic 25.0%
!!! TGTTGTTGAAATTGATTTGA+AGG + chr6_2:66442810-66442829 None:intergenic 25.0%
! CAATTTCAACAACAATATGT+TGG - chr6_2:66442816-66442835 Msa0924490:CDS 25.0%
!! TTATGAATATAGTGGTAATG+TGG - chr6_2:66442908-66442927 Msa0924490:CDS 25.0%
!! AGAATACTGACTATTATACT+TGG + chr6_2:66443126-66443145 None:intergenic 25.0%
!! GACTTTACTTTTGAAAGGAA+AGG + chr6_2:66440156-66440175 None:intergenic 30.0%
TCACATAGAAAGAGAAATAG+AGG - chr6_2:66440174-66440193 Msa0924490:three_prime_UTR 30.0%
ACACTTGAATCTCAACTTAT+AGG - chr6_2:66440205-66440224 Msa0924490:three_prime_UTR 30.0%
GAGAAACAGAGTTAGTTAAA+AGG + chr6_2:66440281-66440300 None:intergenic 30.0%
TCTAATCACTCTACTTAGTT+TGG + chr6_2:66440322-66440341 None:intergenic 30.0%
!!! TGGTGAGTTTTGGAATAAAA+TGG + chr6_2:66440374-66440393 None:intergenic 30.0%
!!! TAGTTTTGTTGGATGATGTT+AGG + chr6_2:66440445-66440464 None:intergenic 30.0%
TAACATAGAGACTTATCATG+AGG + chr6_2:66440619-66440638 None:intergenic 30.0%
GATAAGTCTCTATGTTATGT+AGG - chr6_2:66440622-66440641 Msa0924490:CDS 30.0%
CATTAAGAATTGTTCTCGAA+AGG + chr6_2:66440708-66440727 None:intergenic 30.0%
CTTTCGAGAACAATTCTTAA+TGG - chr6_2:66440706-66440725 Msa0924490:CDS 30.0%
TAGTGATTCAAGCAATAACT+TGG - chr6_2:66441053-66441072 Msa0924490:CDS 30.0%
!! TTTTCTAGCATAGGTGAATT+AGG + chr6_2:66441168-66441187 None:intergenic 30.0%
!! GATAAACTGTTTTCTAGCAT+AGG + chr6_2:66441177-66441196 None:intergenic 30.0%
AATTCCTGCAACATTAACAA+TGG - chr6_2:66441350-66441369 Msa0924490:intron 30.0%
AAAGAAGCAAGAAACAACTA+TGG + chr6_2:66441609-66441628 None:intergenic 30.0%
TATTGGATACTGATATGTGT+CGG + chr6_2:66441774-66441793 None:intergenic 30.0%
ATAGTAGATCAGTAGAATGA+AGG - chr6_2:66441973-66441992 Msa0924490:CDS 30.0%
ACTGCTAATCTCAAAAACAT+AGG + chr6_2:66442201-66442220 None:intergenic 30.0%
TGTTCTCTATATTTGTACCT+TGG + chr6_2:66442398-66442417 None:intergenic 30.0%
AACATGTAACTTGAATCTTG+AGG + chr6_2:66442423-66442442 None:intergenic 30.0%
! TGAACAAATTGTTGTTGTTG+TGG + chr6_2:66442489-66442508 None:intergenic 30.0%
!! GAATTTGATTTGTGGATGTA+GGG + chr6_2:66442536-66442555 None:intergenic 30.0%
TGAATTTGTGATTGTTGTGA+TGG + chr6_2:66442591-66442610 None:intergenic 30.0%
TGTTGCATTGTCATGTTATA+TGG + chr6_2:66442666-66442685 None:intergenic 30.0%
TATTAGAAGCTACCACATTA+GGG + chr6_2:66442701-66442720 None:intergenic 30.0%
! GTTCCATTTTGTGGTATTAT+TGG + chr6_2:66442726-66442745 None:intergenic 30.0%
CAAATGTTGAATTAGGGTTA+GGG + chr6_2:66442779-66442798 None:intergenic 30.0%
ACAAATGTTGAATTAGGGTT+AGG + chr6_2:66442780-66442799 None:intergenic 30.0%
TAACCATAATTAGTACCACT+AGG + chr6_2:66442891-66442910 None:intergenic 30.0%
GATTGATATTGAGTAACCAA+AGG + chr6_2:66442972-66442991 None:intergenic 30.0%
ATTATCTCCAGAAAATTGCT+GGG + chr6_2:66443036-66443055 None:intergenic 30.0%
AATCTGAATCCGATTTATAC+CGG + chr6_2:66443086-66443105 None:intergenic 30.0%
GTATTCTGATAGAGATTGAA+CGG - chr6_2:66443139-66443158 Msa0924490:five_prime_UTR 30.0%
! CCATTAGAATTGGTGAGTTT+TGG + chr6_2:66440384-66440403 None:intergenic 35.0%
CCAAAACTCACCAATTCTAA+TGG - chr6_2:66440381-66440400 Msa0924490:CDS 35.0%
! TTTTGTTGGATGATGTTAGG+AGG + chr6_2:66440442-66440461 None:intergenic 35.0%
GTTTCATTAACATGTGATCG+TGG + chr6_2:66440514-66440533 None:intergenic 35.0%
AAGTCTCTATGTTATGTAGG+CGG - chr6_2:66440625-66440644 Msa0924490:CDS 35.0%
AGGTTATCAAGATCTTCATG+AGG + chr6_2:66440760-66440779 None:intergenic 35.0%
CATCTGATGTTACTGTAATG+AGG + chr6_2:66440780-66440799 None:intergenic 35.0%
! ATGATGCAAAATCTGAGACA+TGG - chr6_2:66440938-66440957 Msa0924490:CDS 35.0%
TTATTGCTTGAATCACTAGC+AGG + chr6_2:66441051-66441070 None:intergenic 35.0%
TTCATCTTTGTCTCCTTCAA+TGG - chr6_2:66441200-66441219 Msa0924490:intron 35.0%
CTTCAACAAGAGAACAAAGT+TGG - chr6_2:66441273-66441292 Msa0924490:intron 35.0%
AAAGTTGGAATGAAGCAAGA+TGG - chr6_2:66441288-66441307 Msa0924490:intron 35.0%
!! TGTTGTTTCTTCTGCTAATG+TGG - chr6_2:66441317-66441336 Msa0924490:intron 35.0%
! TGGTGATGTGAATGTGAATA+GGG - chr6_2:66441401-66441420 Msa0924490:intron 35.0%
GATGATGAGAGATCAGATTA+TGG - chr6_2:66441432-66441451 Msa0924490:intron 35.0%
TCAGATTATGGAGGACTAAT+CGG - chr6_2:66441444-66441463 Msa0924490:intron 35.0%
! GTGTAACATTGCTCTCTTTT+TGG - chr6_2:66441569-66441588 Msa0924490:intron 35.0%
TATCATCAAGAACAAGTCCA+AGG - chr6_2:66442378-66442397 Msa0924490:CDS 35.0%
!! TGTTGATTTGGATCTGATTG+TGG + chr6_2:66442450-66442469 None:intergenic 35.0%
! ACAAATTGTTGTTGTTGTGG+TGG + chr6_2:66442486-66442505 None:intergenic 35.0%
TGGTGTATATAGTGAGTGTT+GGG + chr6_2:66442513-66442532 None:intergenic 35.0%
!! GGAATTTGATTTGTGGATGT+AGG + chr6_2:66442537-66442556 None:intergenic 35.0%
ATTTGTGATTGTTGTGATGG+TGG + chr6_2:66442588-66442607 None:intergenic 35.0%
ACATACACTGGATATTGTTG+TGG + chr6_2:66442618-66442637 None:intergenic 35.0%
CTATTAGAAGCTACCACATT+AGG + chr6_2:66442702-66442721 None:intergenic 35.0%
CTAATGTGGTAGCTTCTAAT+AGG - chr6_2:66442700-66442719 Msa0924490:CDS 35.0%
AGGCCAATAATACCACAAAA+TGG - chr6_2:66442720-66442739 Msa0924490:CDS 35.0%
! GCTTTATTAGGGTAAATTGG+TGG + chr6_2:66442750-66442769 None:intergenic 35.0%
! GGTGCTTTATTAGGGTAAAT+TGG + chr6_2:66442753-66442772 None:intergenic 35.0%
! TAGGGTTAGGTGCTTTATTA+GGG + chr6_2:66442761-66442780 None:intergenic 35.0%
! TTAGGGTTAGGTGCTTTATT+AGG + chr6_2:66442762-66442781 None:intergenic 35.0%
!! TGTGGTTGATGATGAAATTG+AGG + chr6_2:66442846-66442865 None:intergenic 35.0%
GCTACATTAATAGGAACTTG+TGG + chr6_2:66442864-66442883 None:intergenic 35.0%
! GAATATAGTGGTAATGTGGA+AGG - chr6_2:66442912-66442931 Msa0924490:CDS 35.0%
ACAGCAAAATAATGCTCCTT+TGG - chr6_2:66442953-66442972 Msa0924490:CDS 35.0%
CATTATCTCCAGAAAATTGC+TGG + chr6_2:66443037-66443056 None:intergenic 35.0%
GAATAGCAGAGTGAAAACAG+GGG + chr6_2:66440259-66440278 None:intergenic 40.0%
GGAATAGCAGAGTGAAAACA+GGG + chr6_2:66440260-66440279 None:intergenic 40.0%
AGGAATAGCAGAGTGAAAAC+AGG + chr6_2:66440261-66440280 None:intergenic 40.0%
! TTTGGTGCAGAGTGAAAACA+GGG + chr6_2:66440304-66440323 None:intergenic 40.0%
TGGAATAAAATGGAACGGAG+CGG + chr6_2:66440364-66440383 None:intergenic 40.0%
TTGGATGATGTTAGGAGGAA+TGG + chr6_2:66440437-66440456 None:intergenic 40.0%
!!! TCGACTCAGGATAGTTTTGT+TGG + chr6_2:66440456-66440475 None:intergenic 40.0%
TCATTAACATGTGATCGTGG+TGG + chr6_2:66440511-66440530 None:intergenic 40.0%
AGCTGGTACTTGAGAGTAAA+GGG + chr6_2:66440736-66440755 None:intergenic 40.0%
AAGCTGGTACTTGAGAGTAA+AGG + chr6_2:66440737-66440756 None:intergenic 40.0%
ACCAGATACCACACTTTCAA+TGG - chr6_2:66440903-66440922 Msa0924490:CDS 40.0%
CCAGATACCACACTTTCAAT+GGG - chr6_2:66440904-66440923 Msa0924490:CDS 40.0%
AAGTGATCCCATTGAAAGTG+TGG + chr6_2:66440914-66440933 None:intergenic 40.0%
TTGATGCACTCAACAACTCA+GGG - chr6_2:66440965-66440984 Msa0924490:CDS 40.0%
TTGGAATGAAGCAAGATGGT+GGG - chr6_2:66441292-66441311 Msa0924490:intron 40.0%
TTCTTCTGCTAATGTGGCTA+TGG - chr6_2:66441323-66441342 Msa0924490:intron 40.0%
GAAGCCATTGTTAATGTTGC+AGG + chr6_2:66441357-66441376 None:intergenic 40.0%
ACATTAACAATGGCTTCAGC+TGG - chr6_2:66441360-66441379 Msa0924490:intron 40.0%
GGAGTTGTTACTGTTACTAG+TGG - chr6_2:66441381-66441400 Msa0924490:intron 40.0%
! GTGGTGATGTGAATGTGAAT+AGG - chr6_2:66441400-66441419 Msa0924490:intron 40.0%
GATGAGAGATCAGATTATGG+AGG - chr6_2:66441435-66441454 Msa0924490:intron 40.0%
TGAACAAGCTGCAATGGTAA+AGG + chr6_2:66441483-66441502 None:intergenic 40.0%
CTTGTAACTGAATCTGGTGA+AGG + chr6_2:66441534-66441553 None:intergenic 40.0%
CTTCACCAGATTCAGTTACA+AGG - chr6_2:66441532-66441551 Msa0924490:intron 40.0%
CCATACCTTGTAACTGAATC+TGG + chr6_2:66441540-66441559 None:intergenic 40.0%
CCAGATTCAGTTACAAGGTA+TGG - chr6_2:66441537-66441556 Msa0924490:intron 40.0%
ATACTGATATGTGTCGGACA+TGG + chr6_2:66441768-66441787 None:intergenic 40.0%
GGTGTGTCTAATGTCTATTG+TGG + chr6_2:66441851-66441870 None:intergenic 40.0%
CAGAGAGACGTAACATGATA+TGG + chr6_2:66442246-66442265 None:intergenic 40.0%
ATCATGTTACGTCTCTCTGT+CGG - chr6_2:66442247-66442266 Msa0924490:CDS 40.0%
! TGATTTGGATCTGATTGTGG+TGG + chr6_2:66442447-66442466 None:intergenic 40.0%
! GGTTGTTGGAGTTGTTGATT+TGG + chr6_2:66442462-66442481 None:intergenic 40.0%
! AATTGTTGTTGTTGTGGTGG+TGG + chr6_2:66442483-66442502 None:intergenic 40.0%
GTGGTGTATATAGTGAGTGT+TGG + chr6_2:66442514-66442533 None:intergenic 40.0%
!! TTTGATTTGTGGATGTAGGG+TGG + chr6_2:66442533-66442552 None:intergenic 40.0%
ACACTGGATATTGTTGTGGA+TGG + chr6_2:66442614-66442633 None:intergenic 40.0%
CCAATAGGCATTACATACAC+TGG + chr6_2:66442630-66442649 None:intergenic 40.0%
CCAGTGTATGTAATGCCTAT+TGG - chr6_2:66442627-66442646 Msa0924490:CDS 40.0%
GGTTGTTGTGTAGATCCAAT+AGG + chr6_2:66442645-66442664 None:intergenic 40.0%
! ATTGGTGGAGTTCCATTTTG+TGG + chr6_2:66442735-66442754 None:intergenic 40.0%
GTTGAATTAGGGTTAGGGTT+AGG + chr6_2:66442774-66442793 None:intergenic 40.0%
CTAGGAGGAGCTACATTAAT+AGG + chr6_2:66442873-66442892 None:intergenic 40.0%
ATTAATGTAGCTCCTCCTAG+TGG - chr6_2:66442873-66442892 Msa0924490:CDS 40.0%
CCATAATTAGTACCACTAGG+AGG + chr6_2:66442888-66442907 None:intergenic 40.0%
CCTCCTAGTGGTACTAATTA+TGG - chr6_2:66442885-66442904 Msa0924490:CDS 40.0%
GTCAAATAGAACTTCACAGC+CGG - chr6_2:66443064-66443083 Msa0924490:five_prime_UTR 40.0%
ACTTCACAGCCGGTATAAAT+CGG - chr6_2:66443074-66443093 Msa0924490:five_prime_UTR 40.0%
TTTGACCGATCGATCTTGAT+CGG - chr6_2:66443198-66443217 Msa0924490:five_prime_UTR 40.0%
TTGGTGCAGAGTGAAAACAG+GGG + chr6_2:66440303-66440322 None:intergenic 45.0%
!! GTTTGGTGCAGAGTGAAAAC+AGG + chr6_2:66440305-66440324 None:intergenic 45.0%
AGGGGTGGATCCATTAGAAT+TGG + chr6_2:66440394-66440413 None:intergenic 45.0%
GATGATGTTAGGAGGAATGG+TGG + chr6_2:66440434-66440453 None:intergenic 45.0%
TTAACATGTGATCGTGGTGG+TGG + chr6_2:66440508-66440527 None:intergenic 45.0%
AGAGACTTATCATGAGGACG+CGG + chr6_2:66440613-66440632 None:intergenic 45.0%
CAAGATCTTCATGAGGAAGC+TGG + chr6_2:66440753-66440772 None:intergenic 45.0%
! CCCATTGAAAGTGTGGTATC+TGG + chr6_2:66440907-66440926 None:intergenic 45.0%
GTTGATGCACTCAACAACTC+AGG - chr6_2:66440964-66440983 Msa0924490:CDS 45.0%
AACTCAGGGATTCTCTCAAG+AGG - chr6_2:66440979-66440998 Msa0924490:CDS 45.0%
GGTGGCAAATTCTCCATTGA+AGG + chr6_2:66441216-66441235 None:intergenic 45.0%
TCGATGAAAATGCTGGTAGC+AGG - chr6_2:66441250-66441269 Msa0924490:intron 45.0%
GTTGGAATGAAGCAAGATGG+TGG - chr6_2:66441291-66441310 Msa0924490:intron 45.0%
ACAAGCTGCAATGGTAAAGG+CGG + chr6_2:66441480-66441499 None:intergenic 45.0%
CTTGGTTGAACAAGCTGCAA+TGG + chr6_2:66441489-66441508 None:intergenic 45.0%
! CATTGCAGCTTGTTCAACCA+AGG - chr6_2:66441487-66441506 Msa0924490:intron 45.0%
CTTGTTCAACCAAGGACTAG+TGG - chr6_2:66441495-66441514 Msa0924490:intron 45.0%
!! GTGATTGTTGTGATGGTGGA+GGG + chr6_2:66442584-66442603 None:intergenic 45.0%
!! TGTGATTGTTGTGATGGTGG+AGG + chr6_2:66442585-66442604 None:intergenic 45.0%
! GATGCTTCCCAGCAATTTTC+TGG - chr6_2:66443026-66443045 Msa0924490:exon 45.0%
ACTTGGAAATTCCGACTGCA+GGG + chr6_2:66443109-66443128 None:intergenic 45.0%
TACTTGGAAATTCCGACTGC+AGG + chr6_2:66443110-66443129 None:intergenic 45.0%
ACTAAGTGACTAGTGACTGC+AGG - chr6_2:66443232-66443251 Msa0924490:five_prime_UTR 45.0%
CTAAGTGACTAGTGACTGCA+GGG - chr6_2:66443233-66443252 Msa0924490:five_prime_UTR 45.0%
!!! TAAAAAATAAAAGTATAAAA+TGG + chr6_2:66441954-66441973 None:intergenic 5.0%
!!! TTTTTTTAATGATTAAAATT+TGG - chr6_2:66443291-66443310 Msa0924490:five_prime_UTR 5.0%
CAGGGGAGAAACAGAGTAAG+TGG + chr6_2:66440242-66440261 None:intergenic 50.0%
GTTAGGAGGAATGGTGGTTG+CGG + chr6_2:66440428-66440447 None:intergenic 50.0%
! GATAAGGACTCGATCGACTC+AGG + chr6_2:66440469-66440488 None:intergenic 50.0%
CTTCGTCTCATGTGCAGCTA+CGG - chr6_2:66440574-66440593 Msa0924490:CDS 50.0%
! TTCTCGAAAGGCGCGAACAT+AGG + chr6_2:66440696-66440715 None:intergenic 50.0%
! AGAGGTGTGTCAGATTCAGC+AGG - chr6_2:66440997-66441016 Msa0924490:CDS 50.0%
TCATCGACGCGAACACGAAT+TGG + chr6_2:66441237-66441256 None:intergenic 50.0%
! GTTCGCGTCGATGAAAATGC+TGG - chr6_2:66441243-66441262 Msa0924490:intron 50.0%
! GTTCAACCAAGGACTAGTGG+TGG - chr6_2:66441498-66441517 Msa0924490:intron 50.0%
!! GTTGTTGTGGTGGTGGTTGT+TGG + chr6_2:66442476-66442495 None:intergenic 50.0%
!! GTGATGGTGGAGGGTAAACT+TGG + chr6_2:66442575-66442594 None:intergenic 50.0%
GGATTCAGATTCCCTGCAGT+CGG - chr6_2:66443095-66443114 Msa0924490:five_prime_UTR 50.0%
GACCACCGATCAAGATCGAT+CGG + chr6_2:66443206-66443225 None:intergenic 50.0%
CGGAGCGGAACAGAACAGAA+TGG + chr6_2:66440349-66440368 None:intergenic 55.0%
!! CTGTGGTGGTGGCGATGATA+AGG + chr6_2:66440485-66440504 None:intergenic 55.0%
GACTCCTTCCCTAATGTCCC+CGG - chr6_2:66440544-66440563 Msa0924490:CDS 55.0%
ATGAGACGAAGCTTGCCACC+GGG + chr6_2:66440565-66440584 None:intergenic 55.0%
CATGAGACGAAGCTTGCCAC+CGG + chr6_2:66440566-66440585 None:intergenic 55.0%
GTCTCATGTGCAGCTACGGA+GGG - chr6_2:66440578-66440597 Msa0924490:CDS 55.0%
TGACACCAGAATCGTGGTCG+TGG - chr6_2:66440648-66440667 Msa0924490:CDS 55.0%
TCGACGCGAACACGAATTGG+TGG + chr6_2:66441234-66441253 None:intergenic 55.0%
CTCACACCACCACTAGTCCT+TGG + chr6_2:66441507-66441526 None:intergenic 55.0%
GACCGATCGATCTTGATCGG+TGG - chr6_2:66443201-66443220 Msa0924490:five_prime_UTR 55.0%
GTTGCGGCGGTGGAGATAAG+GGG + chr6_2:66440412-66440431 None:intergenic 60.0%
GGTTGCGGCGGTGGAGATAA+GGG + chr6_2:66440413-66440432 None:intergenic 60.0%
TGGTTGCGGCGGTGGAGATA+AGG + chr6_2:66440414-66440433 None:intergenic 60.0%
AGGAGGAATGGTGGTTGCGG+CGG + chr6_2:66440425-66440444 None:intergenic 60.0%
!! TGTGATCGTGGTGGTGGCTG+TGG + chr6_2:66440502-66440521 None:intergenic 60.0%
TCCTTCCCTAATGTCCCCGG+TGG - chr6_2:66440547-66440566 Msa0924490:CDS 60.0%
GCTTGCCACCGGGGACATTA+GGG + chr6_2:66440555-66440574 None:intergenic 60.0%
AGCTTGCCACCGGGGACATT+AGG + chr6_2:66440556-66440575 None:intergenic 60.0%
TGAGACGAAGCTTGCCACCG+GGG + chr6_2:66440564-66440583 None:intergenic 60.0%
CGTCTCATGTGCAGCTACGG+AGG - chr6_2:66440577-66440596 Msa0924490:CDS 60.0%
AGGCGGTGACACCAGAATCG+TGG - chr6_2:66440642-66440661 Msa0924490:CDS 60.0%
GCGATCCACGACCACGATTC+TGG + chr6_2:66440656-66440675 None:intergenic 60.0%
AGCAGCAGCTGCAGGAGTCA+TGG + chr6_2:66442994-66443013 None:intergenic 60.0%
AATGCTGCAGCAGCAGCTGC+AGG + chr6_2:66443002-66443021 None:intergenic 60.0%
AGGAATGGTGGTTGCGGCGG+TGG + chr6_2:66440422-66440441 None:intergenic 65.0%
!! GATCGTGGTGGTGGCTGTGG+TGG + chr6_2:66440499-66440518 None:intergenic 65.0%
GCCACCGGGGACATTAGGGA+AGG + chr6_2:66440551-66440570 None:intergenic 65.0%
GCGGCGGTGGAGATAAGGGG+TGG + chr6_2:66440409-66440428 None:intergenic 70.0%
!! CGTGGTGGTGGCTGTGGTGG+TGG + chr6_2:66440496-66440515 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 66440054 66443381 66440054 ID=Msa0924490;Name=Msa0924490
chr6_2 mRNA 66440054 66443381 66440054 ID=Msa0924490-mRNA-1;Parent=Msa0924490;Name=Msa0924490-mRNA-1;_AED=0.01;_eAED=0.01;_QI=346|1|1|1|1|1|2|290|637
chr6_2 exon 66440054 66441103 66440054 ID=Msa0924490-mRNA-1:exon:10536;Parent=Msa0924490-mRNA-1
chr6_2 exon 66441882 66443381 66441882 ID=Msa0924490-mRNA-1:exon:10535;Parent=Msa0924490-mRNA-1
chr6_2 five_prime_UTR 66443036 66443381 66443036 ID=Msa0924490-mRNA-1:five_prime_utr;Parent=Msa0924490-mRNA-1
chr6_2 CDS 66441882 66443035 66441882 ID=Msa0924490-mRNA-1:cds;Parent=Msa0924490-mRNA-1
chr6_2 CDS 66440344 66441103 66440344 ID=Msa0924490-mRNA-1:cds;Parent=Msa0924490-mRNA-1
chr6_2 three_prime_UTR 66440054 66440343 66440054 ID=Msa0924490-mRNA-1:three_prime_utr;Parent=Msa0924490-mRNA-1
Gene Sequence

>Msa0924490

ATGGATCCACCCCTTATCTCCACCGCCGCAACCACCATTCCTCCTAACATCATCCAACAAAACTATCCTGAGTCGATCGAGTCCTTATCATCGCCACCACCACAGCCACCACCACGATCACATGTTAATGAAACAATGAACGACGACTCCTTCCCTAATGTCCCCGGTGGCAAGCTTCGTCTCATGTGCAGCTACGGAGGGCACATAATGCCGCGTCCTCATGATAAGTCTCTATGTTATGTAGGCGGTGACACCAGAATCGTGGTCGTGGATCGCAGTTCTTCTCTGAAAGACCTATGTTCGCGCCTTTCGAGAACAATTCTTAATGGAAGACCCTTTACTCTCAAGTACCAGCTTCCTCATGAAGATCTTGATAACCTCATTACAGTAACATCAGATGAAGATCTTGATAACATGATTGAAGAATATGATCGTATAGCATCTGCATCTTCTACAATGAAAGCTTCATCATCAAGACTTAGAGTGTTTCTGTTCTTCACAAAACCAGATACCACACTTTCAATGGGATCACTTCTTGATGATGCAAAATCTGAGACATGGTTTGTTGATGCACTCAACAACTCAGGGATTCTCTCAAGAGGTGTGTCAGATTCAGCAGGAGATTCTTTTGTGAATCTTGATAATGTTCCTGCTAGTGATTCAAGCAATAACTTGGAATCTCAAGTAGAGTCATTGACTCTACTTGAAAACAATAACAATAAGGTTAAGAATGTTTTTGATAATGTTAATGCTGTGAATTCAGCACCTAATTCACCTATGCTAGAAAACAGTTTATCATCTTCATCTTTGTCTCCTTCAATGGAGAATTTGCCACCAATTCGTGTTCGCGTCGATGAAAATGCTGGTAGCAGGCTTCAACAAGAGAACAAAGTTGGAATGAAGCAAGATGGTGGGTTTGTTGTTTCTTCTGCTAATGTGGCTATGGCTGCAATTCCTGCAACATTAACAATGGCTTCAGCTGGAGTTGTTACTGTTACTAGTGGTGATGTGAATGTGAATAGGGTTGTTTCTGATGATGAGAGATCAGATTATGGAGGACTAATCGGATCTCGAAAACCGCCTTTACCATTGCAGCTTGTTCAACCAAGGACTAGTGGTGGTGTGAGTCTTCCTTCACCAGATTCAGTTACAAGTGATAGCAGTAGTATTGCATCTACAAATTCTTTCTCCAAGATTATTTATCATCAAGAACAAGTCCAAGGTACAAATATAGAGAACAAACCTCAAGATTCAAGTTACATGTTACCACCACAATCAGATCCAAATCAACAACTCCAACAACCACCACCACAACAACAACAATTTGTTCATCCCAACACTCACTATATACACCACCCTACATCCACAAATCAAATTCCAATTTCATCATATTACCAAGTTTACCCTCCACCATCACAACAATCACAAATTCACCATCCACAACAATATCCAGTGTATGTAATGCCTATTGGATCTACACAACAACCATATAACATGACAATGCAACATAATATAAATGACCCTAATGTGGTAGCTTCTAATAGGCCAATAATACCACAAAATGGAACTCCACCAATTTACCCTAATAAAGCACCTAACCCTAACCCTAATTCAACATTTGTTCAAGTACCTTCAAATCAATTTCAACAACAATATGTTGGTATGCCTCAATTTCATCATCAACCACAAGTTCCTATTAATGTAGCTCCTCCTAGTGGTACTAATTATGGTTATGAATATAGTGGTAATGTGGAAGGTCAAGTGTACTATACTCAACAGCAAAATAATGCTCCTTTGGTTACTCAATATCAATCCATGACTCCTGCAGCTGCTGCTGCAGCATTATCAGATGCTTCCCAGCAATTTTCTGGAGATAATGTTCAGCAGTCAAATAGAACTTCACAGCCGGTATAA
Protein sequence

>Msa0924490

MDPPLISTAATTIPPNIIQQNYPESIESLSSPPPQPPPRSHVNETMNDDSFPNVPGGKLRLMCSYGGHIMPRPHDKSLCYVGGDTRIVVVDRSSSLKDLCSRLSRTILNGRPFTLKYQLPHEDLDNLITVTSDEDLDNMIEEYDRIASASSTMKASSSRLRVFLFFTKPDTTLSMGSLLDDAKSETWFVDALNNSGILSRGVSDSAGDSFVNLDNVPASDSSNNLESQVESLTLLENNNNKVKNVFDNVNAVNSAPNSPMLENSLSSSSLSPSMENLPPIRVRVDENAGSRLQQENKVGMKQDGGFVVSSANVAMAAIPATLTMASAGVVTVTSGDVNVNRVVSDDERSDYGGLIGSRKPPLPLQLVQPRTSGGVSLPSPDSVTSDSSSIASTNSFSKIIYHQEQVQGTNIENKPQDSSYMLPPQSDPNQQLQQPPPQQQQFVHPNTHYIHHPTSTNQIPISSYYQVYPPPSQQSQIHHPQQYPVYVMPIGSTQQPYNMTMQHNINDPNVVASNRPIIPQNGTPPIYPNKAPNPNPNSTFVQVPSNQFQQQYVGMPQFHHQPQVPINVAPPSGTNYGYEYSGNVEGQVYYTQQQNNAPLVTQYQSMTPAAAAAALSDASQQFSGDNVQQSNRTSQPV*