AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0963290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0963290 MtrunA17_Chr6g0483611 95.305 639 28 1 1 637 1 639 0.0 1109
Msa0963290 MtrunA17_Chr8g0392371 47.574 639 242 29 22 637 20 588 5.66e-133 402
Msa0963290 MtrunA17_Chr1g0209151 43.687 396 163 15 3 359 14 388 1.55e-71 245
Msa0963290 MtrunA17_Chr4g0048541 44.490 245 100 11 58 285 28 253 2.89e-41 155
Msa0963290 MtrunA17_Chr2g0305141 44.509 173 73 7 38 200 146 305 8.41e-30 126
Msa0963290 MtrunA17_Chr2g0279951 50.926 108 48 3 58 165 43 145 1.26e-28 119
Msa0963290 MtrunA17_Chr4g0065211 38.372 172 87 7 42 206 139 298 1.11e-26 116
Msa0963290 MtrunA17_Chr4g0049441 48.214 112 51 4 58 167 38 144 4.61e-26 111
Msa0963290 MtrunA17_Chr6g0461841 43.382 136 67 4 31 164 162 289 1.73e-24 109
Msa0963290 MtrunA17_Chr2g0310761 40.690 145 76 4 58 200 168 304 8.95e-24 107
Msa0963290 MtrunA17_Chr2g0277031 40.476 126 63 3 44 169 2 115 2.08e-22 98.6
Msa0963290 MtrunA17_Chr1g0196631 46.729 107 50 3 58 164 193 292 4.52e-22 101
Msa0963290 MtrunA17_Chr2g0310781 39.583 144 76 4 59 200 151 285 4.65e-22 101
Msa0963290 MtrunA17_Chr5g0428011 46.789 109 52 3 58 165 26 129 7.74e-22 98.2
Msa0963290 MtrunA17_Chr8g0357611 42.056 107 55 2 59 165 179 278 9.12e-20 94.4
Msa0963290 MtrunA17_Chr4g0072741 42.254 142 71 5 53 193 46 177 1.75e-19 93.6
Msa0963290 MtrunA17_Chr5g0412711 46.000 100 53 1 55 154 12 110 2.31e-19 87.4
Msa0963290 MtrunA17_Chr5g0428071 36.054 147 79 4 56 193 40 180 3.62e-19 90.5
Msa0963290 MtrunA17_Chr3g0117061 47.253 91 46 1 55 145 5 93 1.43e-18 84.7
Msa0963290 MtrunA17_Chr5g0440771 44.643 112 52 5 58 165 3 108 7.18e-18 82.4
Msa0963290 MtrunA17_Chr4g0058551 45.263 95 50 1 55 149 5 97 1.09e-15 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0963290 AT2G01190.1 37.830 719 317 25 18 637 33 720 1.04e-100 323
Msa0963290 AT3G18230.1 41.194 653 270 24 54 637 59 666 8.40e-93 301
Msa0963290 AT4G05150.1 44.000 150 60 5 58 193 58 197 8.28e-33 132
Msa0963290 AT5G09620.2 41.071 168 69 4 58 222 39 179 1.17e-28 120
Msa0963290 AT5G09620.1 41.071 168 69 4 58 222 39 179 1.19e-28 120
Msa0963290 AT1G25300.1 52.778 108 42 2 58 165 10 108 1.47e-28 115
Msa0963290 AT5G64430.1 45.890 146 67 4 58 199 44 181 5.70e-27 115
Msa0963290 AT5G57610.1 44.203 138 69 4 58 194 23 153 3.87e-26 114
Msa0963290 AT5G16220.1 37.288 177 73 3 57 198 29 202 3.52e-25 109
Msa0963290 AT3G46920.2 46.296 108 53 2 58 165 74 176 2.92e-23 105
Msa0963290 AT3G46920.1 46.296 108 53 2 58 165 8 110 3.08e-23 105
Msa0963290 AT1G16270.1 35.976 164 92 3 57 214 163 319 3.72e-23 105
Msa0963290 AT1G16270.2 35.976 164 92 3 57 214 163 319 3.72e-23 105
Msa0963290 AT1G16270.3 35.976 164 92 3 57 214 163 319 3.72e-23 105
Msa0963290 AT5G49920.1 40.426 141 71 3 58 198 9 136 7.62e-23 99.8
Msa0963290 AT1G04700.3 44.094 127 60 3 38 164 105 220 2.48e-22 102
Msa0963290 AT1G04700.1 44.094 127 60 3 38 164 105 220 2.80e-22 102
Msa0963290 AT1G04700.2 44.094 127 60 3 38 164 105 220 2.80e-22 102
Msa0963290 AT3G26510.1 46.789 109 49 3 59 164 10 112 1.45e-21 93.6
Msa0963290 AT3G26510.4 46.789 109 49 3 59 164 10 112 1.45e-21 93.6
Msa0963290 AT3G26510.3 46.789 109 49 3 59 164 10 112 1.45e-21 93.6
Msa0963290 AT3G26510.2 46.789 109 49 3 59 164 10 112 1.45e-21 93.6
Msa0963290 AT3G26510.6 46.789 109 49 3 59 164 10 112 1.45e-21 93.6
Msa0963290 AT3G26510.5 46.789 109 49 3 59 164 10 112 1.45e-21 93.6
Msa0963290 AT2G35050.1 43.519 108 53 3 58 165 176 275 4.46e-21 99.0
Msa0963290 AT2G35050.2 43.519 108 53 3 58 165 176 275 4.46e-21 99.0
Msa0963290 AT3G48240.1 50.000 88 42 1 59 146 14 99 9.62e-20 87.8
Msa0963290 AT3G24715.1 41.667 108 56 2 58 165 175 275 2.16e-19 93.6
Msa0963290 AT3G24715.3 41.667 108 56 2 58 165 175 275 2.16e-19 93.6
Msa0963290 AT3G24715.2 41.667 108 56 2 58 165 175 275 2.16e-19 93.6
Msa0963290 AT1G70640.1 47.253 91 47 1 59 149 8 97 5.02e-18 82.4
Msa0963290 AT5G63130.1 47.872 94 47 1 56 149 12 103 1.34e-14 73.2
Msa0963290 AT5G63130.2 47.872 94 47 1 56 149 12 103 1.34e-14 73.2

Find 178 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGGGTTAGGTGCTTTATT+AGG 0.142649 6_3:+87746204 None:intergenic
ACTTGAACAAATGTTGAATT+AGG 0.181694 6_3:+87746180 None:intergenic
AGATTCTTTATTTGCATATA+AGG 0.236383 6_3:-87748837 Msa0963290:five_prime_UTR
CCATTAGAATTGGTGAGTTT+TGG 0.242966 6_3:+87748570 None:intergenic
TGTTGCATTGTCATGTTATA+TGG 0.281590 6_3:+87746300 None:intergenic
ACACTTGAATCTCAACTTAT+AGG 0.282398 6_3:-87748746 Msa0963290:five_prime_UTR
CCTCCTAGTGGTACTAATTA+TGG 0.283273 6_3:-87746078 Msa0963290:CDS
GAGAAACAGAGTTAGTTAAA+AGG 0.288036 6_3:+87748673 None:intergenic
ACTTGGTAATATGATGAAAT+TGG 0.294397 6_3:+87746408 None:intergenic
CTATTAGAAGCTACCACATT+AGG 0.295088 6_3:+87746264 None:intergenic
TAGGGTTAGGTGCTTTATTA+GGG 0.295696 6_3:+87746205 None:intergenic
CTAGGAGGAGCTACATTAAT+AGG 0.313944 6_3:+87746093 None:intergenic
GGTGCTTTATTAGGGTAAAT+TGG 0.314952 6_3:+87746213 None:intergenic
GGTTGTTGGTGTTGTTGATT+TGG 0.317057 6_3:+87746504 None:intergenic
AGCTTGCCTCCGGGGACATT+AGG 0.320024 6_3:+87748398 None:intergenic
ACAAATGTTGAATTAGGGTT+AGG 0.325195 6_3:+87746186 None:intergenic
GGTTGCGGCGGTGGAGATAA+GGG 0.328130 6_3:+87748541 None:intergenic
CTTGAACAAATGTTGAATTA+GGG 0.329171 6_3:+87746181 None:intergenic
GCGATCCACGACCACGATTC+TGG 0.330991 6_3:+87748298 None:intergenic
TTCATCTTTGTCTCCTTCAA+TGG 0.340866 6_3:-87747751 Msa0963290:CDS
TCATCGACACGAACACGAAT+TGG 0.342900 6_3:+87747717 None:intergenic
CCAAAACTCACCAATTCTAA+TGG 0.345127 6_3:-87748570 Msa0963290:exon
GATGATGAGAGATCAGATTA+TGG 0.354406 6_3:-87747519 Msa0963290:CDS
TCTAATCACTCTACTTAGTT+TGG 0.357265 6_3:+87748632 None:intergenic
CCAGTGTATGTAATGCCTAT+TGG 0.357269 6_3:-87746336 Msa0963290:CDS
TTCTTGATGATAAATAATCT+TGG 0.357557 6_3:+87746596 None:intergenic
CCATACCTTGTAACTGAATC+TGG 0.358887 6_3:+87747414 None:intergenic
AGGAATGGTGGTTGCGGCGG+TGG 0.359388 6_3:+87748532 None:intergenic
CCCATTGAAAGTGTGGTATC+TGG 0.360704 6_3:+87748047 None:intergenic
AGGCCAATAATACCACAAAA+TGG 0.366926 6_3:-87746243 Msa0963290:CDS
CATTATCTCCAGAAAATTGC+TGG 0.372749 6_3:+87745929 None:intergenic
AATATGTTTATTCACTAAGT+TGG 0.376692 6_3:-87745707 Msa0963290:three_prime_UTR
GTTGTTGTGGTGGTGGTTGT+TGG 0.377560 6_3:+87746490 None:intergenic
ACAGCAAAATAATGCTCCTT+TGG 0.379173 6_3:-87746010 Msa0963290:CDS
CTAATGTGGTAGCTTCTAAT+AGG 0.379802 6_3:-87746263 Msa0963290:CDS
ACCAGATACCACACTTTCAA+TGG 0.385542 6_3:-87748048 Msa0963290:CDS
GCTTGAAAACAACAGCAATA+AGG 0.390941 6_3:-87747850 Msa0963290:CDS
GAAGCCATTGTTAATGTTGC+AGG 0.394087 6_3:+87747597 None:intergenic
TGGTTGCGGCGGTGGAGATA+AGG 0.395600 6_3:+87748540 None:intergenic
GCTTGCCTCCGGGGACATTA+GGG 0.396519 6_3:+87748399 None:intergenic
AGGAATAGCAGAGTGAAAAC+AGG 0.407587 6_3:+87748693 None:intergenic
GTTTGGTGCAGAGTGAAAAC+AGG 0.409676 6_3:+87748649 None:intergenic
CGTGGTGGTGGCTGTGGTGG+TGG 0.411827 6_3:+87748458 None:intergenic
TGTTGTTGAAATTGATTTGA+AGG 0.417721 6_3:+87746156 None:intergenic
TTCTTCTGCTAATGTGGCTA+TGG 0.422627 6_3:-87747628 Msa0963290:CDS
CAAATGTTGAATTAGGGTTA+GGG 0.423748 6_3:+87746187 None:intergenic
CATGAGACGAAGCTTGCCTC+CGG 0.429165 6_3:+87748388 None:intergenic
TACTTGGAAATTCCGACTGC+AGG 0.430425 6_3:+87745856 None:intergenic
TCAGATTATGGAGGACTAAT+CGG 0.430519 6_3:-87747507 Msa0963290:CDS
TATTAGAAGCTACCACATTA+GGG 0.432131 6_3:+87746265 None:intergenic
TGTTCTCTATATTTGTACCT+TGG 0.440592 6_3:+87746568 None:intergenic
AGCTGGTACTTGAGAGTAAA+GGG 0.442320 6_3:+87748218 None:intergenic
AATGCTGCAGCAGCAGCTGC+AGG 0.444841 6_3:+87745964 None:intergenic
GTGGTGATGTGAATGTGAAT+AGG 0.446979 6_3:-87747551 Msa0963290:CDS
ACTCTTAATCTTGATGATGA+AGG 0.448004 6_3:+87748089 None:intergenic
AATCTGAATCCGATTTATAC+TGG 0.448664 6_3:+87745880 None:intergenic
AGGGGTGGATCCATTAGAAT+TGG 0.451765 6_3:+87748560 None:intergenic
TGGTGATGTGAATGTGAATA+GGG 0.453479 6_3:-87747550 Msa0963290:CDS
GTTGAATTAGGGTTAGGGTT+AGG 0.457137 6_3:+87746192 None:intergenic
AATTGTTGTTGTTGTGGTGG+TGG 0.458277 6_3:+87746483 None:intergenic
GTTGCGGCGGTGGAGATAAG+GGG 0.466311 6_3:+87748542 None:intergenic
ACTTCACAGCCAGTATAAAT+CGG 0.468848 6_3:-87745889 Msa0963290:exon
CTTCACCAGATTCAGTTACA+AGG 0.472765 6_3:-87747419 Msa0963290:intron
TGAATTTGTGATTGTTGTGA+TGG 0.476153 6_3:+87746375 None:intergenic
TGAAATTGGAACTTGATTTG+TGG 0.478641 6_3:+87746422 None:intergenic
TGGAATACTAAGACAAAAGC+TGG 0.482124 6_3:-87748904 None:intergenic
CATGAGGGCGCGGCATTATG+TGG 0.483512 6_3:+87748351 None:intergenic
CTTCAACAAGAGCACAAAGT+TGG 0.485627 6_3:-87747678 Msa0963290:CDS
GGTGGCAAATTCTCCATTGA+AGG 0.487486 6_3:+87747738 None:intergenic
TGTTGTTTCTTCTGCTAATG+TGG 0.488333 6_3:-87747634 Msa0963290:CDS
TTGGATGATGTTAGGAGGAA+TGG 0.492279 6_3:+87748517 None:intergenic
CTGTGGTGGTGGCGATGATA+AGG 0.492297 6_3:+87748469 None:intergenic
ATTTGTGATTGTTGTGATGG+TGG 0.494094 6_3:+87746378 None:intergenic
GGTTGCTGTGTAGATCCAAT+AGG 0.494757 6_3:+87746321 None:intergenic
CAGGGGAGAAACAGAGTAAG+TGG 0.496252 6_3:+87748712 None:intergenic
GATAAGGACTCGATCGACTC+AGG 0.496681 6_3:+87748485 None:intergenic
AATTATGGTTATGAATATAG+TGG 0.496876 6_3:-87746063 Msa0963290:CDS
CATCTGATGTTACTGTAATG+AGG 0.497110 6_3:+87748174 None:intergenic
GATAAATCTCTATGTTATGT+AGG 0.497487 6_3:-87748329 Msa0963290:CDS
GTGATGGTGGAGGGTAAACT+TGG 0.498230 6_3:+87746391 None:intergenic
TGAACAAATTGTTGTTGTTG+TGG 0.501182 6_3:+87746477 None:intergenic
TGTTGATTTGGATCTGATTG+TGG 0.501554 6_3:+87746516 None:intergenic
ATGAGACGAAGCTTGCCTCC+GGG 0.501595 6_3:+87748389 None:intergenic
GGAACTTGATTTGTGGATGT+AGG 0.503316 6_3:+87746429 None:intergenic
GAACTTGATTTGTGGATGTA+GGG 0.509377 6_3:+87746430 None:intergenic
CCAGATACCACACTTTCAAT+GGG 0.510170 6_3:-87748047 Msa0963290:CDS
CTTCGTCTCATGTGCAGCTA+CGG 0.512697 6_3:-87748377 Msa0963290:CDS
TGACACCAGAATCGTGGTCG+TGG 0.514574 6_3:-87748303 Msa0963290:CDS
CTTTCGAGAACAATTCTCAA+TGG 0.517958 6_3:-87748245 Msa0963290:CDS
TCGATGAAAATGCTGGTAGC+AGG 0.519398 6_3:-87747701 Msa0963290:CDS
ACATTAACAATGGCTTCAGC+TGG 0.524092 6_3:-87747591 Msa0963290:CDS
CTCACACCACCACTAGTCCT+TGG 0.525251 6_3:+87747447 None:intergenic
GTGGTGTATATAGTGAGTGT+TGG 0.528585 6_3:+87746452 None:intergenic
TGGTGTATATAGTGAGTGTT+GGG 0.532795 6_3:+87746453 None:intergenic
TGTGATCGTGGTGGTGGCTG+TGG 0.535147 6_3:+87748452 None:intergenic
AGAATACTGACTATTATACT+TGG 0.537358 6_3:+87745840 None:intergenic
CAATTTCAACAACAATATGT+TGG 0.538930 6_3:-87746147 Msa0963290:CDS
CAAGATCTTCATGAGGAAGC+TGG 0.541665 6_3:+87748201 None:intergenic
TTCTCGAAAGACGCGAACAT+AGG 0.543999 6_3:+87748258 None:intergenic
GATCGTGGTGGTGGCTGTGG+TGG 0.546440 6_3:+87748455 None:intergenic
ACTAAGTGACTAGTGACTGC+AGG 0.548513 6_3:-87745731 Msa0963290:three_prime_UTR
TTTGACCGATCGATCTTGAT+CGG 0.550838 6_3:-87745765 Msa0963290:three_prime_UTR
GTTGATGCACTCAACAACTC+AGG 0.551095 6_3:-87747987 Msa0963290:CDS
AGGAGGAATGGTGGTTGCGG+CGG 0.553526 6_3:+87748529 None:intergenic
TTGTTGCTTGAATCACTAGC+AGG 0.554871 6_3:+87747903 None:intergenic
GTTAGGAGGAATGGTGGTTG+CGG 0.554956 6_3:+87748526 None:intergenic
TGTGATTGTTGTGATGGTGG+AGG 0.556066 6_3:+87746381 None:intergenic
GTGATTGTTGTGATGGTGGA+GGG 0.558817 6_3:+87746382 None:intergenic
TTAACATGTGATCGTGGTGG+TGG 0.560719 6_3:+87748446 None:intergenic
AGCAGCAGCTGCAGGAGTCA+TGG 0.562009 6_3:+87745972 None:intergenic
TTGATGCACTCAACAACTCA+GGG 0.562066 6_3:-87747986 Msa0963290:CDS
CTTGATTTGTGGATGTAGGG+TGG 0.562709 6_3:+87746433 None:intergenic
AAGCTGGTACTTGAGAGTAA+AGG 0.565630 6_3:+87748217 None:intergenic
GCTTTATTAGGGTAAATTGG+TGG 0.566463 6_3:+87746216 None:intergenic
ATGGAGGACTAATCGGATCT+CGG 0.569138 6_3:-87747500 Msa0963290:CDS
CTTGGTTGAACAAGCTGCAA+TGG 0.570036 6_3:+87747465 None:intergenic
TTGGAATGAAGCAAGATGGT+GGG 0.571599 6_3:-87747659 Msa0963290:CDS
TGTGGTTGATGATGAAATTG+AGG 0.571680 6_3:+87746120 None:intergenic
ACTTGGAAATTCCGACTGCA+GGG 0.571935 6_3:+87745857 None:intergenic
GAATATAGTGGTAATGTGGA+AGG 0.576884 6_3:-87746051 Msa0963290:CDS
GACTCCTTCCCTAATGTCCC+CGG 0.577267 6_3:-87748407 Msa0963290:CDS
CCAATAGGCATTACATACAC+TGG 0.577687 6_3:+87746336 None:intergenic
CTTGTAACTGAATCTGGTGA+AGG 0.582351 6_3:+87747420 None:intergenic
TCGACACGAACACGAATTGG+TGG 0.582554 6_3:+87747720 None:intergenic
GACCACCGATCAAGATCGAT+CGG 0.585863 6_3:+87745760 None:intergenic
ACAAATTGTTGTTGTTGTGG+TGG 0.586159 6_3:+87746480 None:intergenic
CGTCTCATGTGCAGCTACGG+AGG 0.586855 6_3:-87748374 Msa0963290:CDS
CTTGTTCAACCAAGGACTAG+TGG 0.587169 6_3:-87747456 Msa0963290:CDS
TAACATAGAGATTTATCATG+AGG 0.592227 6_3:+87748335 None:intergenic
ATTATCTCCAGAAAATTGCT+GGG 0.594343 6_3:+87745930 None:intergenic
AAGTGATCCCATTGAAAGTG+TGG 0.597227 6_3:+87748040 None:intergenic
TGAACAAGCTGCAATGGTAA+AGG 0.597677 6_3:+87747471 None:intergenic
AACATGTAACTTGAATCTTG+AGG 0.598939 6_3:+87746543 None:intergenic
GTATTCTGATAGAGATTGAA+CGG 0.600860 6_3:-87745824 Msa0963290:three_prime_UTR
GCGGCGGTGGAGATAAGGGG+TGG 0.603325 6_3:+87748545 None:intergenic
GACCGATCGATCTTGATCGG+TGG 0.603894 6_3:-87745762 Msa0963290:three_prime_UTR
TCACATAGAAAGAGAAACAG+AGG 0.604647 6_3:-87748777 Msa0963290:five_prime_UTR
TGATTTGGATCTGATTGTGG+TGG 0.606936 6_3:+87746519 None:intergenic
ACATACACTGGATATTGTTG+TGG 0.607055 6_3:+87746348 None:intergenic
GGATTCAGATTCCCTGCAGT+CGG 0.609652 6_3:-87745868 Msa0963290:three_prime_UTR
AGAGATTTATCATGAGGGCG+CGG 0.611116 6_3:+87748341 None:intergenic
GGAATAGCAGAGTGAAAACA+GGG 0.611692 6_3:+87748694 None:intergenic
ACAAGCTGCAATGGTAAAGG+TGG 0.616722 6_3:+87747474 None:intergenic
CGGAGCGGAACAGAACAGAA+TGG 0.616944 6_3:+87748605 None:intergenic
GCTACATTAATAGGAACTTG+TGG 0.617987 6_3:+87746102 None:intergenic
TAATATAAATGACCCTAATG+TGG 0.618458 6_3:-87746277 Msa0963290:CDS
AACATAGAGATTTATCATGA+GGG 0.618870 6_3:+87748336 None:intergenic
CATTGCAGCTTGTTCAACCA+AGG 0.622441 6_3:-87747464 Msa0963290:CDS
AACTCAGGGATTCTCTCAAG+AGG 0.622550 6_3:-87747972 Msa0963290:CDS
AATTCCTGCAACATTAACAA+TGG 0.624548 6_3:-87747601 Msa0963290:CDS
GCCTCCGGGGACATTAGGGA+AGG 0.625405 6_3:+87748403 None:intergenic
GTTGGAATGAAGCAAGATGG+TGG 0.626927 6_3:-87747660 Msa0963290:CDS
GATGATGTTAGGAGGAATGG+TGG 0.629860 6_3:+87748520 None:intergenic
GTTCGTGTCGATGAAAATGC+TGG 0.632505 6_3:-87747708 Msa0963290:CDS
AAAGTTGGAATGAAGCAAGA+TGG 0.635123 6_3:-87747663 Msa0963290:CDS
TTATGAATATAGTGGTAATG+TGG 0.637729 6_3:-87746055 Msa0963290:CDS
CTAAGTGACTAGTGACTGCA+GGG 0.638083 6_3:-87745730 Msa0963290:three_prime_UTR
TTTGGTGCAGAGTGAAAACA+GGG 0.643559 6_3:+87748650 None:intergenic
ACACTGGATATTGTTGTGGA+TGG 0.644950 6_3:+87746352 None:intergenic
TATCATCAAGAACAAGTCCA+AGG 0.646741 6_3:-87746585 Msa0963290:CDS
GTTTCATTAACATGTGATCG+TGG 0.649887 6_3:+87748440 None:intergenic
TGAGACGAAGCTTGCCTCCG+GGG 0.658630 6_3:+87748390 None:intergenic
GATTGATATTGAGTAACCAA+AGG 0.659965 6_3:+87745994 None:intergenic
ATGATGCAAAATCTGAGACA+TGG 0.663147 6_3:-87748013 Msa0963290:CDS
TGGAATAAAATGGAACGGAG+CGG 0.664354 6_3:+87748590 None:intergenic
GGAGTTGTTACTGTTACTAG+TGG 0.668781 6_3:-87747570 Msa0963290:CDS
AAATCTCTATGTTATGTAGG+CGG 0.670686 6_3:-87748326 Msa0963290:CDS
GATGAGAGATCAGATTATGG+AGG 0.672016 6_3:-87747516 Msa0963290:CDS
ATTAATGTAGCTCCTCCTAG+TGG 0.674238 6_3:-87746090 Msa0963290:CDS
GTTCAACCAAGGACTAGTGG+TGG 0.681531 6_3:-87747453 Msa0963290:CDS
AGGCGGTGACACCAGAATCG+TGG 0.682815 6_3:-87748309 Msa0963290:CDS
CCATAATTAGTACCACTAGG+AGG 0.694247 6_3:+87746078 None:intergenic
AGGTTATCAAGATCTTCATG+AGG 0.698968 6_3:+87748194 None:intergenic
TAACCATAATTAGTACCACT+AGG 0.707891 6_3:+87746075 None:intergenic
TCATTAACATGTGATCGTGG+TGG 0.712353 6_3:+87748443 None:intergenic
TCCTTCCCTAATGTCCCCGG+AGG 0.714140 6_3:-87748404 Msa0963290:CDS
GAATAGCAGAGTGAAAACAG+GGG 0.755698 6_3:+87748695 None:intergenic
TTGGTGCAGAGTGAAAACAG+GGG 0.854008 6_3:+87748651 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATAAAAATTATGTTTAGT+AGG - chr6_3:87747230-87747249 Msa0963290:intron 15.0%
!!! ATTTTTTTCTATAGAAAAGT+AGG + chr6_3:87748857-87748876 None:intergenic 15.0%
!!! AGATTCTTTATTTGCATATA+AGG - chr6_3:87745665-87745684 Msa0963290:three_prime_UTR 20.0%
!! AAGATGTTTCAAAGTAATAA+TGG - chr6_3:87747461-87747480 Msa0963290:CDS 20.0%
!!! ACCATTTAAAATTTGTCTAT+AGG - chr6_3:87747519-87747538 Msa0963290:CDS 20.0%
!!! TCCTATAGACAAATTTTAAA+TGG + chr6_3:87747523-87747542 None:intergenic 20.0%
!!! ATTTAAAATTTGTCTATAGG+AGG - chr6_3:87747522-87747541 Msa0963290:CDS 20.0%
!!! AAGTTCTTACAAGTTTTTTA+TGG - chr6_3:87747834-87747853 Msa0963290:CDS 20.0%
!!! TTCTTGATGATAAATAATCT+TGG + chr6_3:87747909-87747928 None:intergenic 20.0%
!! AATTATGGTTATGAATATAG+TGG - chr6_3:87748439-87748458 Msa0963290:CDS 20.0%
!! AATATGTTTATTCACTAAGT+TGG - chr6_3:87748795-87748814 Msa0963290:five_prime_UTR 20.0%
!!! TATGTGACTTTACTTTTGAA+AGG + chr6_3:87745712-87745731 None:intergenic 25.0%
!!! AGTTTTGGAATAAAATGGAA+CGG + chr6_3:87745920-87745939 None:intergenic 25.0%
! AACATAGAGATTTATCATGA+GGG + chr6_3:87746169-87746188 None:intergenic 25.0%
! TAACATAGAGATTTATCATG+AGG + chr6_3:87746170-87746189 None:intergenic 25.0%
! GATAAATCTCTATGTTATGT+AGG - chr6_3:87746173-87746192 Msa0963290:CDS 25.0%
!!! GCAAACTTTTTTAGAATTAG+AGG - chr6_3:87747307-87747326 Msa0963290:intron 25.0%
!!! AAGCAATAATAGTTGCTTTT+TGG + chr6_3:87747394-87747413 None:intergenic 25.0%
!! ACTTGGTAATATGATGAAAT+TGG + chr6_3:87748097-87748116 None:intergenic 25.0%
! TAATATAAATGACCCTAATG+TGG - chr6_3:87748225-87748244 Msa0963290:CDS 25.0%
! CTTGAACAAATGTTGAATTA+GGG + chr6_3:87748324-87748343 None:intergenic 25.0%
! ACTTGAACAAATGTTGAATT+AGG + chr6_3:87748325-87748344 None:intergenic 25.0%
!!! TGTTGTTGAAATTGATTTGA+AGG + chr6_3:87748349-87748368 None:intergenic 25.0%
! CAATTTCAACAACAATATGT+TGG - chr6_3:87748355-87748374 Msa0963290:CDS 25.0%
!! TTATGAATATAGTGGTAATG+TGG - chr6_3:87748447-87748466 Msa0963290:CDS 25.0%
!! AGAATACTGACTATTATACT+TGG + chr6_3:87748665-87748684 None:intergenic 25.0%
!! GACTTTACTTTTGAAAGGAA+AGG + chr6_3:87745707-87745726 None:intergenic 30.0%
ACACTTGAATCTCAACTTAT+AGG - chr6_3:87745756-87745775 Msa0963290:three_prime_UTR 30.0%
GAGAAACAGAGTTAGTTAAA+AGG + chr6_3:87745832-87745851 None:intergenic 30.0%
TCTAATCACTCTACTTAGTT+TGG + chr6_3:87745873-87745892 None:intergenic 30.0%
!!! TGGTGAGTTTTGGAATAAAA+TGG + chr6_3:87745925-87745944 None:intergenic 30.0%
!!! TAGTTTTGTTGGATGATGTT+AGG + chr6_3:87745996-87746015 None:intergenic 30.0%
AAATCTCTATGTTATGTAGG+CGG - chr6_3:87746176-87746195 Msa0963290:CDS 30.0%
!! ACTCTTAATCTTGATGATGA+AGG + chr6_3:87746416-87746435 None:intergenic 30.0%
!! TTTTCTAGCATAGGTGAATT+AGG + chr6_3:87746719-87746738 None:intergenic 30.0%
AATTCCTGCAACATTAACAA+TGG - chr6_3:87746901-87746920 Msa0963290:intron 30.0%
CTAACTAATCTGACACATAT+TGG + chr6_3:87747361-87747380 None:intergenic 30.0%
TAGTGACATAGATGTATTTG+TGG + chr6_3:87747440-87747459 None:intergenic 30.0%
AGTAATAATGGTCAATGAGA+TGG - chr6_3:87747473-87747492 Msa0963290:CDS 30.0%
TGTTCTCTATATTTGTACCT+TGG + chr6_3:87747937-87747956 None:intergenic 30.0%
AACATGTAACTTGAATCTTG+AGG + chr6_3:87747962-87747981 None:intergenic 30.0%
! TGAACAAATTGTTGTTGTTG+TGG + chr6_3:87748028-87748047 None:intergenic 30.0%
! TGAAATTGGAACTTGATTTG+TGG + chr6_3:87748083-87748102 None:intergenic 30.0%
TGAATTTGTGATTGTTGTGA+TGG + chr6_3:87748130-87748149 None:intergenic 30.0%
TGTTGCATTGTCATGTTATA+TGG + chr6_3:87748205-87748224 None:intergenic 30.0%
TATTAGAAGCTACCACATTA+GGG + chr6_3:87748240-87748259 None:intergenic 30.0%
! GTTCCATTTTGTGGTATTAT+TGG + chr6_3:87748265-87748284 None:intergenic 30.0%
CAAATGTTGAATTAGGGTTA+GGG + chr6_3:87748318-87748337 None:intergenic 30.0%
ACAAATGTTGAATTAGGGTT+AGG + chr6_3:87748319-87748338 None:intergenic 30.0%
TAACCATAATTAGTACCACT+AGG + chr6_3:87748430-87748449 None:intergenic 30.0%
GATTGATATTGAGTAACCAA+AGG + chr6_3:87748511-87748530 None:intergenic 30.0%
ATTATCTCCAGAAAATTGCT+GGG + chr6_3:87748575-87748594 None:intergenic 30.0%
AATCTGAATCCGATTTATAC+TGG + chr6_3:87748625-87748644 None:intergenic 30.0%
GTATTCTGATAGAGATTGAA+CGG - chr6_3:87748678-87748697 Msa0963290:five_prime_UTR 30.0%
TCACATAGAAAGAGAAACAG+AGG - chr6_3:87745725-87745744 Msa0963290:three_prime_UTR 35.0%
! CCATTAGAATTGGTGAGTTT+TGG + chr6_3:87745935-87745954 None:intergenic 35.0%
CCAAAACTCACCAATTCTAA+TGG - chr6_3:87745932-87745951 Msa0963290:CDS 35.0%
! TTTTGTTGGATGATGTTAGG+AGG + chr6_3:87745993-87746012 None:intergenic 35.0%
GTTTCATTAACATGTGATCG+TGG + chr6_3:87746065-87746084 None:intergenic 35.0%
CTTTCGAGAACAATTCTCAA+TGG - chr6_3:87746257-87746276 Msa0963290:CDS 35.0%
AGGTTATCAAGATCTTCATG+AGG + chr6_3:87746311-87746330 None:intergenic 35.0%
CATCTGATGTTACTGTAATG+AGG + chr6_3:87746331-87746350 None:intergenic 35.0%
! ATGATGCAAAATCTGAGACA+TGG - chr6_3:87746489-87746508 Msa0963290:CDS 35.0%
GCTTGAAAACAACAGCAATA+AGG - chr6_3:87746652-87746671 Msa0963290:intron 35.0%
!! GACAAACTGTTTTCTAGCAT+AGG + chr6_3:87746728-87746747 None:intergenic 35.0%
TTCATCTTTGTCTCCTTCAA+TGG - chr6_3:87746751-87746770 Msa0963290:intron 35.0%
AAAGTTGGAATGAAGCAAGA+TGG - chr6_3:87746839-87746858 Msa0963290:intron 35.0%
!! TGTTGTTTCTTCTGCTAATG+TGG - chr6_3:87746868-87746887 Msa0963290:intron 35.0%
! TGGTGATGTGAATGTGAATA+GGG - chr6_3:87746952-87746971 Msa0963290:intron 35.0%
GATGATGAGAGATCAGATTA+TGG - chr6_3:87746983-87747002 Msa0963290:intron 35.0%
TCAGATTATGGAGGACTAAT+CGG - chr6_3:87746995-87747014 Msa0963290:intron 35.0%
! GTGTAACATTGCTCTCTTTT+TGG - chr6_3:87747120-87747139 Msa0963290:intron 35.0%
AATTTGTCTATAGGAGGAGA+TGG - chr6_3:87747528-87747547 Msa0963290:CDS 35.0%
CAGATACGTCAAAATTGCTA+AGG + chr6_3:87747754-87747773 None:intergenic 35.0%
ATGAGTCACAAAATCTGACA+CGG + chr6_3:87747803-87747822 None:intergenic 35.0%
TATCATCAAGAACAAGTCCA+AGG - chr6_3:87747917-87747936 Msa0963290:CDS 35.0%
!! TGTTGATTTGGATCTGATTG+TGG + chr6_3:87747989-87748008 None:intergenic 35.0%
! ACAAATTGTTGTTGTTGTGG+TGG + chr6_3:87748025-87748044 None:intergenic 35.0%
TGGTGTATATAGTGAGTGTT+GGG + chr6_3:87748052-87748071 None:intergenic 35.0%
!! GAACTTGATTTGTGGATGTA+GGG + chr6_3:87748075-87748094 None:intergenic 35.0%
ATTTGTGATTGTTGTGATGG+TGG + chr6_3:87748127-87748146 None:intergenic 35.0%
ACATACACTGGATATTGTTG+TGG + chr6_3:87748157-87748176 None:intergenic 35.0%
CTATTAGAAGCTACCACATT+AGG + chr6_3:87748241-87748260 None:intergenic 35.0%
CTAATGTGGTAGCTTCTAAT+AGG - chr6_3:87748239-87748258 Msa0963290:CDS 35.0%
AGGCCAATAATACCACAAAA+TGG - chr6_3:87748259-87748278 Msa0963290:CDS 35.0%
! GCTTTATTAGGGTAAATTGG+TGG + chr6_3:87748289-87748308 None:intergenic 35.0%
! GGTGCTTTATTAGGGTAAAT+TGG + chr6_3:87748292-87748311 None:intergenic 35.0%
! TAGGGTTAGGTGCTTTATTA+GGG + chr6_3:87748300-87748319 None:intergenic 35.0%
! TTAGGGTTAGGTGCTTTATT+AGG + chr6_3:87748301-87748320 None:intergenic 35.0%
!! TGTGGTTGATGATGAAATTG+AGG + chr6_3:87748385-87748404 None:intergenic 35.0%
GCTACATTAATAGGAACTTG+TGG + chr6_3:87748403-87748422 None:intergenic 35.0%
! GAATATAGTGGTAATGTGGA+AGG - chr6_3:87748451-87748470 Msa0963290:CDS 35.0%
ACAGCAAAATAATGCTCCTT+TGG - chr6_3:87748492-87748511 Msa0963290:CDS 35.0%
CATTATCTCCAGAAAATTGC+TGG + chr6_3:87748576-87748595 None:intergenic 35.0%
ACTTCACAGCCAGTATAAAT+CGG - chr6_3:87748613-87748632 Msa0963290:five_prime_UTR 35.0%
GAATAGCAGAGTGAAAACAG+GGG + chr6_3:87745810-87745829 None:intergenic 40.0%
GGAATAGCAGAGTGAAAACA+GGG + chr6_3:87745811-87745830 None:intergenic 40.0%
AGGAATAGCAGAGTGAAAAC+AGG + chr6_3:87745812-87745831 None:intergenic 40.0%
! TTTGGTGCAGAGTGAAAACA+GGG + chr6_3:87745855-87745874 None:intergenic 40.0%
TGGAATAAAATGGAACGGAG+CGG + chr6_3:87745915-87745934 None:intergenic 40.0%
TTGGATGATGTTAGGAGGAA+TGG + chr6_3:87745988-87746007 None:intergenic 40.0%
!!! TCGACTCAGGATAGTTTTGT+TGG + chr6_3:87746007-87746026 None:intergenic 40.0%
TCATTAACATGTGATCGTGG+TGG + chr6_3:87746062-87746081 None:intergenic 40.0%
AGCTGGTACTTGAGAGTAAA+GGG + chr6_3:87746287-87746306 None:intergenic 40.0%
AAGCTGGTACTTGAGAGTAA+AGG + chr6_3:87746288-87746307 None:intergenic 40.0%
ACCAGATACCACACTTTCAA+TGG - chr6_3:87746454-87746473 Msa0963290:CDS 40.0%
CCAGATACCACACTTTCAAT+GGG - chr6_3:87746455-87746474 Msa0963290:CDS 40.0%
AAGTGATCCCATTGAAAGTG+TGG + chr6_3:87746465-87746484 None:intergenic 40.0%
TTGATGCACTCAACAACTCA+GGG - chr6_3:87746516-87746535 Msa0963290:CDS 40.0%
! TTGTTGCTTGAATCACTAGC+AGG + chr6_3:87746602-87746621 None:intergenic 40.0%
! CTTCAACAAGAGCACAAAGT+TGG - chr6_3:87746824-87746843 Msa0963290:intron 40.0%
TTGGAATGAAGCAAGATGGT+GGG - chr6_3:87746843-87746862 Msa0963290:intron 40.0%
TTCTTCTGCTAATGTGGCTA+TGG - chr6_3:87746874-87746893 Msa0963290:intron 40.0%
GAAGCCATTGTTAATGTTGC+AGG + chr6_3:87746908-87746927 None:intergenic 40.0%
ACATTAACAATGGCTTCAGC+TGG - chr6_3:87746911-87746930 Msa0963290:intron 40.0%
GGAGTTGTTACTGTTACTAG+TGG - chr6_3:87746932-87746951 Msa0963290:intron 40.0%
! GTGGTGATGTGAATGTGAAT+AGG - chr6_3:87746951-87746970 Msa0963290:intron 40.0%
GATGAGAGATCAGATTATGG+AGG - chr6_3:87746986-87747005 Msa0963290:intron 40.0%
TGAACAAGCTGCAATGGTAA+AGG + chr6_3:87747034-87747053 None:intergenic 40.0%
CTTGTAACTGAATCTGGTGA+AGG + chr6_3:87747085-87747104 None:intergenic 40.0%
CTTCACCAGATTCAGTTACA+AGG - chr6_3:87747083-87747102 Msa0963290:intron 40.0%
CCATACCTTGTAACTGAATC+TGG + chr6_3:87747091-87747110 None:intergenic 40.0%
CCAGATTCAGTTACAAGGTA+TGG - chr6_3:87747088-87747107 Msa0963290:intron 40.0%
AATTAGAGGTCACTCGATGT+CGG - chr6_3:87747321-87747340 Msa0963290:intron 40.0%
! TGATTTGGATCTGATTGTGG+TGG + chr6_3:87747986-87748005 None:intergenic 40.0%
!! GGTTGTTGGTGTTGTTGATT+TGG + chr6_3:87748001-87748020 None:intergenic 40.0%
! AATTGTTGTTGTTGTGGTGG+TGG + chr6_3:87748022-87748041 None:intergenic 40.0%
GTGGTGTATATAGTGAGTGT+TGG + chr6_3:87748053-87748072 None:intergenic 40.0%
!! GGAACTTGATTTGTGGATGT+AGG + chr6_3:87748076-87748095 None:intergenic 40.0%
ACACTGGATATTGTTGTGGA+TGG + chr6_3:87748153-87748172 None:intergenic 40.0%
CCAATAGGCATTACATACAC+TGG + chr6_3:87748169-87748188 None:intergenic 40.0%
CCAGTGTATGTAATGCCTAT+TGG - chr6_3:87748166-87748185 Msa0963290:CDS 40.0%
! ATTGGTGGAGTTCCATTTTG+TGG + chr6_3:87748274-87748293 None:intergenic 40.0%
GTTGAATTAGGGTTAGGGTT+AGG + chr6_3:87748313-87748332 None:intergenic 40.0%
CTAGGAGGAGCTACATTAAT+AGG + chr6_3:87748412-87748431 None:intergenic 40.0%
ATTAATGTAGCTCCTCCTAG+TGG - chr6_3:87748412-87748431 Msa0963290:CDS 40.0%
CCATAATTAGTACCACTAGG+AGG + chr6_3:87748427-87748446 None:intergenic 40.0%
CCTCCTAGTGGTACTAATTA+TGG - chr6_3:87748424-87748443 Msa0963290:CDS 40.0%
TTTGACCGATCGATCTTGAT+CGG - chr6_3:87748737-87748756 Msa0963290:five_prime_UTR 40.0%
TTGGTGCAGAGTGAAAACAG+GGG + chr6_3:87745854-87745873 None:intergenic 45.0%
!! GTTTGGTGCAGAGTGAAAAC+AGG + chr6_3:87745856-87745875 None:intergenic 45.0%
AGGGGTGGATCCATTAGAAT+TGG + chr6_3:87745945-87745964 None:intergenic 45.0%
GATGATGTTAGGAGGAATGG+TGG + chr6_3:87745985-87746004 None:intergenic 45.0%
TTAACATGTGATCGTGGTGG+TGG + chr6_3:87746059-87746078 None:intergenic 45.0%
AGAGATTTATCATGAGGGCG+CGG + chr6_3:87746164-87746183 None:intergenic 45.0%
TTCTCGAAAGACGCGAACAT+AGG + chr6_3:87746247-87746266 None:intergenic 45.0%
CAAGATCTTCATGAGGAAGC+TGG + chr6_3:87746304-87746323 None:intergenic 45.0%
! CCCATTGAAAGTGTGGTATC+TGG + chr6_3:87746458-87746477 None:intergenic 45.0%
GTTGATGCACTCAACAACTC+AGG - chr6_3:87746515-87746534 Msa0963290:CDS 45.0%
AACTCAGGGATTCTCTCAAG+AGG - chr6_3:87746530-87746549 Msa0963290:CDS 45.0%
GGTGGCAAATTCTCCATTGA+AGG + chr6_3:87746767-87746786 None:intergenic 45.0%
TCATCGACACGAACACGAAT+TGG + chr6_3:87746788-87746807 None:intergenic 45.0%
! GTTCGTGTCGATGAAAATGC+TGG - chr6_3:87746794-87746813 Msa0963290:intron 45.0%
TCGATGAAAATGCTGGTAGC+AGG - chr6_3:87746801-87746820 Msa0963290:intron 45.0%
GTTGGAATGAAGCAAGATGG+TGG - chr6_3:87746842-87746861 Msa0963290:intron 45.0%
ATGGAGGACTAATCGGATCT+CGG - chr6_3:87747002-87747021 Msa0963290:intron 45.0%
ACAAGCTGCAATGGTAAAGG+TGG + chr6_3:87747031-87747050 None:intergenic 45.0%
CTTGGTTGAACAAGCTGCAA+TGG + chr6_3:87747040-87747059 None:intergenic 45.0%
! CATTGCAGCTTGTTCAACCA+AGG - chr6_3:87747038-87747057 Msa0963290:intron 45.0%
CTTGTTCAACCAAGGACTAG+TGG - chr6_3:87747046-87747065 Msa0963290:intron 45.0%
GCTTTGCCACAACACATCTT+AGG - chr6_3:87747410-87747429 Msa0963290:intron 45.0%
AGGAGGAGATGGATGAATGA+AGG - chr6_3:87747539-87747558 Msa0963290:CDS 45.0%
!! CTTGATTTGTGGATGTAGGG+TGG + chr6_3:87748072-87748091 None:intergenic 45.0%
!! GTGATTGTTGTGATGGTGGA+GGG + chr6_3:87748123-87748142 None:intergenic 45.0%
!! TGTGATTGTTGTGATGGTGG+AGG + chr6_3:87748124-87748143 None:intergenic 45.0%
GGTTGCTGTGTAGATCCAAT+AGG + chr6_3:87748184-87748203 None:intergenic 45.0%
! GATGCTTCCCAGCAATTTTC+TGG - chr6_3:87748565-87748584 Msa0963290:exon 45.0%
ACTTGGAAATTCCGACTGCA+GGG + chr6_3:87748648-87748667 None:intergenic 45.0%
TACTTGGAAATTCCGACTGC+AGG + chr6_3:87748649-87748668 None:intergenic 45.0%
ACTAAGTGACTAGTGACTGC+AGG - chr6_3:87748771-87748790 Msa0963290:five_prime_UTR 45.0%
CTAAGTGACTAGTGACTGCA+GGG - chr6_3:87748772-87748791 Msa0963290:five_prime_UTR 45.0%
!!! ATAATATTCATATTTTTTTT+TGG - chr6_3:87747664-87747683 Msa0963290:CDS 5.0%
!!! TTTTTTTAATGATTAAAATT+TGG - chr6_3:87748829-87748848 Msa0963290:five_prime_UTR 5.0%
CAGGGGAGAAACAGAGTAAG+TGG + chr6_3:87745793-87745812 None:intergenic 50.0%
GTTAGGAGGAATGGTGGTTG+CGG + chr6_3:87745979-87745998 None:intergenic 50.0%
! GATAAGGACTCGATCGACTC+AGG + chr6_3:87746020-87746039 None:intergenic 50.0%
CTTCGTCTCATGTGCAGCTA+CGG - chr6_3:87746125-87746144 Msa0963290:CDS 50.0%
TCGACACGAACACGAATTGG+TGG + chr6_3:87746785-87746804 None:intergenic 50.0%
! GTTCAACCAAGGACTAGTGG+TGG - chr6_3:87747049-87747068 Msa0963290:intron 50.0%
GGTGTGCCTAAGATGTGTTG+TGG + chr6_3:87747419-87747438 None:intergenic 50.0%
!! GTTGTTGTGGTGGTGGTTGT+TGG + chr6_3:87748015-87748034 None:intergenic 50.0%
!! GTGATGGTGGAGGGTAAACT+TGG + chr6_3:87748114-87748133 None:intergenic 50.0%
GGATTCAGATTCCCTGCAGT+CGG - chr6_3:87748634-87748653 Msa0963290:five_prime_UTR 50.0%
GACCACCGATCAAGATCGAT+CGG + chr6_3:87748745-87748764 None:intergenic 50.0%
CGGAGCGGAACAGAACAGAA+TGG + chr6_3:87745900-87745919 None:intergenic 55.0%
!! CTGTGGTGGTGGCGATGATA+AGG + chr6_3:87746036-87746055 None:intergenic 55.0%
GACTCCTTCCCTAATGTCCC+CGG - chr6_3:87746095-87746114 Msa0963290:CDS 55.0%
ATGAGACGAAGCTTGCCTCC+GGG + chr6_3:87746116-87746135 None:intergenic 55.0%
CATGAGACGAAGCTTGCCTC+CGG + chr6_3:87746117-87746136 None:intergenic 55.0%
TGACACCAGAATCGTGGTCG+TGG - chr6_3:87746199-87746218 Msa0963290:CDS 55.0%
CTCACACCACCACTAGTCCT+TGG + chr6_3:87747058-87747077 None:intergenic 55.0%
GACCGATCGATCTTGATCGG+TGG - chr6_3:87748740-87748759 Msa0963290:five_prime_UTR 55.0%
GTTGCGGCGGTGGAGATAAG+GGG + chr6_3:87745963-87745982 None:intergenic 60.0%
GGTTGCGGCGGTGGAGATAA+GGG + chr6_3:87745964-87745983 None:intergenic 60.0%
TGGTTGCGGCGGTGGAGATA+AGG + chr6_3:87745965-87745984 None:intergenic 60.0%
AGGAGGAATGGTGGTTGCGG+CGG + chr6_3:87745976-87745995 None:intergenic 60.0%
!! TGTGATCGTGGTGGTGGCTG+TGG + chr6_3:87746053-87746072 None:intergenic 60.0%
TCCTTCCCTAATGTCCCCGG+AGG - chr6_3:87746098-87746117 Msa0963290:CDS 60.0%
GCTTGCCTCCGGGGACATTA+GGG + chr6_3:87746106-87746125 None:intergenic 60.0%
AGCTTGCCTCCGGGGACATT+AGG + chr6_3:87746107-87746126 None:intergenic 60.0%
TGAGACGAAGCTTGCCTCCG+GGG + chr6_3:87746115-87746134 None:intergenic 60.0%
CGTCTCATGTGCAGCTACGG+AGG - chr6_3:87746128-87746147 Msa0963290:CDS 60.0%
! CATGAGGGCGCGGCATTATG+TGG + chr6_3:87746154-87746173 None:intergenic 60.0%
AGGCGGTGACACCAGAATCG+TGG - chr6_3:87746193-87746212 Msa0963290:CDS 60.0%
GCGATCCACGACCACGATTC+TGG + chr6_3:87746207-87746226 None:intergenic 60.0%
AGCAGCAGCTGCAGGAGTCA+TGG + chr6_3:87748533-87748552 None:intergenic 60.0%
AATGCTGCAGCAGCAGCTGC+AGG + chr6_3:87748541-87748560 None:intergenic 60.0%
AGGAATGGTGGTTGCGGCGG+TGG + chr6_3:87745973-87745992 None:intergenic 65.0%
!! GATCGTGGTGGTGGCTGTGG+TGG + chr6_3:87746050-87746069 None:intergenic 65.0%
GCCTCCGGGGACATTAGGGA+AGG + chr6_3:87746102-87746121 None:intergenic 65.0%
GCGGCGGTGGAGATAAGGGG+TGG + chr6_3:87745960-87745979 None:intergenic 70.0%
!! CGTGGTGGTGGCTGTGGTGG+TGG + chr6_3:87746047-87746066 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 87745605 87748919 87745605 ID=Msa0963290;Name=Msa0963290
chr6_3 mRNA 87745605 87748919 87745605 ID=Msa0963290-mRNA-1;Parent=Msa0963290;Name=Msa0963290-mRNA-1;_AED=0.01;_eAED=0.01;_QI=346|1|1|1|1|1|2|289|637
chr6_3 exon 87745605 87746653 87745605 ID=Msa0963290-mRNA-1:exon:15913;Parent=Msa0963290-mRNA-1
chr6_3 exon 87747420 87748919 87747420 ID=Msa0963290-mRNA-1:exon:15912;Parent=Msa0963290-mRNA-1
chr6_3 five_prime_UTR 87748574 87748919 87748574 ID=Msa0963290-mRNA-1:five_prime_utr;Parent=Msa0963290-mRNA-1
chr6_3 CDS 87747420 87748573 87747420 ID=Msa0963290-mRNA-1:cds;Parent=Msa0963290-mRNA-1
chr6_3 CDS 87745894 87746653 87745894 ID=Msa0963290-mRNA-1:cds;Parent=Msa0963290-mRNA-1
chr6_3 three_prime_UTR 87745605 87745893 87745605 ID=Msa0963290-mRNA-1:three_prime_utr;Parent=Msa0963290-mRNA-1
Gene Sequence

>Msa0963290

ATGGATCCACCCCTTATCTCCACCGCCGCAACCACCATTCCTCCTAACATCATCCAACAAAACTATCCTGAGTCGATCGAGTCCTTATCATCGCCACCACCACAGCCACCACCACGATCACATGTTAATGAAACAATGAACGACGACTCCTTCCCTAATGTCCCCGGAGGCAAGCTTCGTCTCATGTGCAGCTACGGAGGCCACATAATGCCGCGCCCTCATGATAAATCTCTATGTTATGTAGGCGGTGACACCAGAATCGTGGTCGTGGATCGCAGTTCTTCTCTGAGAGACCTATGTTCGCGTCTTTCGAGAACAATTCTCAATGGAAGACCCTTTACTCTCAAGTACCAGCTTCCTCATGAAGATCTTGATAACCTCATTACAGTAACATCAGATGAAGATCTTGATAACATGATTGAAGAATATGATCGTATAGCATCTGCATCTTCTACAATGAAACCTTCATCATCAAGATTAAGAGTGTTTTTGTTCTTCACAAAACCAGATACCACACTTTCAATGGGATCACTTCTTGATGATGCAAAATCTGAGACATGGTTTGTTGATGCACTCAACAACTCAGGGATTCTCTCAAGAGGTGTGTCAGATTCAGAAAGAGATTCTTTTGTGAATCTTGATAATGTTCCTGCTAGTGATTCAAGCAACAATTTAGAATCTCAAGTAGAATCATTGTCTCTGCTTGAAAACAACAGCAATAAGGTTAAGAATGTTTTTGATAATGTTAATGCTGTGAATTCAACACCTAATTCACCTATGCTAGAAAACAGTTTGTCATCTTCATCTTTGTCTCCTTCAATGGAGAATTTGCCACCAATTCGTGTTCGTGTCGATGAAAATGCTGGTAGCAGGCTTCAACAAGAGCACAAAGTTGGAATGAAGCAAGATGGTGGGTTTGTTGTTTCTTCTGCTAATGTGGCTATGGCTGCAATTCCTGCAACATTAACAATGGCTTCAGCTGGAGTTGTTACTGTTACTAGTGGTGATGTGAATGTGAATAGGGTTGTTTCTGATGATGAGAGATCAGATTATGGAGGACTAATCGGATCTCGGAAACCACCTTTACCATTGCAGCTTGTTCAACCAAGGACTAGTGGTGGTGTGAGTCTTCCTTCACCAGATTCAGTTACAAGTGATAGCAGTAGTATTGCATCTACAAATTCTTTCTCCAAGATTATTTATCATCAAGAACAAGTCCAAGGTACAAATATAGAGAACAAACCTCAAGATTCAAGTTACATGTTACCACCACAATCAGATCCAAATCAACAACACCAACAACCACCACCACAACAACAACAATTTGTTCATCCCAACACTCACTATATACACCACCCTACATCCACAAATCAAGTTCCAATTTCATCATATTACCAAGTTTACCCTCCACCATCACAACAATCACAAATTCACCATCCACAACAATATCCAGTGTATGTAATGCCTATTGGATCTACACAGCAACCATATAACATGACAATGCAACATAATATAAATGACCCTAATGTGGTAGCTTCTAATAGGCCAATAATACCACAAAATGGAACTCCACCAATTTACCCTAATAAAGCACCTAACCCTAACCCTAATTCAACATTTGTTCAAGTACCTTCAAATCAATTTCAACAACAATATGTTGGTATGCCTCAATTTCATCATCAACCACAAGTTCCTATTAATGTAGCTCCTCCTAGTGGTACTAATTATGGTTATGAATATAGTGGTAATGTGGAAGGTCAAGTGTACTATACTCAACAGCAAAATAATGCTCCTTTGGTTACTCAATATCAATCCATGACTCCTGCAGCTGCTGCTGCAGCATTATCAGATGCTTCCCAGCAATTTTCTGGAGATAATGTTCAGCAGTCAAATAGAACTTCACAGCCAGTATAA
Protein sequence

>Msa0963290

MDPPLISTAATTIPPNIIQQNYPESIESLSSPPPQPPPRSHVNETMNDDSFPNVPGGKLRLMCSYGGHIMPRPHDKSLCYVGGDTRIVVVDRSSSLRDLCSRLSRTILNGRPFTLKYQLPHEDLDNLITVTSDEDLDNMIEEYDRIASASSTMKPSSSRLRVFLFFTKPDTTLSMGSLLDDAKSETWFVDALNNSGILSRGVSDSERDSFVNLDNVPASDSSNNLESQVESLSLLENNSNKVKNVFDNVNAVNSTPNSPMLENSLSSSSLSPSMENLPPIRVRVDENAGSRLQQEHKVGMKQDGGFVVSSANVAMAAIPATLTMASAGVVTVTSGDVNVNRVVSDDERSDYGGLIGSRKPPLPLQLVQPRTSGGVSLPSPDSVTSDSSSIASTNSFSKIIYHQEQVQGTNIENKPQDSSYMLPPQSDPNQQHQQPPPQQQQFVHPNTHYIHHPTSTNQVPISSYYQVYPPPSQQSQIHHPQQYPVYVMPIGSTQQPYNMTMQHNINDPNVVASNRPIIPQNGTPPIYPNKAPNPNPNSTFVQVPSNQFQQQYVGMPQFHHQPQVPINVAPPSGTNYGYEYSGNVEGQVYYTQQQNNAPLVTQYQSMTPAAAAAALSDASQQFSGDNVQQSNRTSQPV*