AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0125600

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0125600 MtrunA17_Chr1g0187381 98.187 772 14 0 1 772 54 825 0.0 1582
Msa0125600 MtrunA17_Chr1g0166651 76.319 777 173 4 1 771 1 772 0.0 1206
Msa0125600 MtrunA17_Chr8g0368741 47.302 797 376 11 1 771 1 779 0.0 727
Msa0125600 MtrunA17_Chr5g0417841 33.120 782 477 13 4 771 3 752 4.79e-142 436
Msa0125600 MtrunA17_Chr2g0302531 34.701 804 480 18 2 771 1 793 2.29e-141 435
Msa0125600 MtrunA17_Chr7g0217801 34.816 787 486 16 2 771 1 777 2.54e-137 424
Msa0125600 MtrunA17_Chr7g0217771 39.255 349 204 5 429 771 1 347 6.86e-82 265
Msa0125600 MtrunA17_Chr7g0217821 36.494 348 215 4 429 771 1 347 4.91e-73 242
Msa0125600 MtrunA17_Chr7g0217831 32.821 390 238 10 2 380 1 377 6.45e-40 151
Msa0125600 MtrunA17_Chr2g0322931 28.571 371 230 14 404 754 91 446 2.02e-34 137
Msa0125600 MtrunA17_Chr7g0246941 29.706 340 210 13 424 747 76 402 2.66e-33 133
Msa0125600 MtrunA17_Chr7g0217781 37.209 172 107 1 209 380 17 187 4.66e-26 106
Msa0125600 MtrunA17_Chr7g0217791 29.936 157 92 5 2 147 1 150 3.00e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0125600 AT3G23430.1 65.736 788 246 7 1 771 1 781 0.0 1055
Msa0125600 AT1G68740.1 45.718 794 397 11 1 771 1 783 0.0 687
Msa0125600 AT1G68740.2 43.526 726 376 11 1 703 1 715 0.0 581
Msa0125600 AT1G26730.1 35.430 779 464 14 2 771 1 749 6.68e-149 454
Msa0125600 AT1G14040.1 32.841 813 499 12 2 771 1 809 1.52e-148 455
Msa0125600 AT1G35350.1 35.083 781 465 15 2 771 1 750 3.17e-147 449
Msa0125600 AT3G29060.1 32.767 824 465 15 2 767 1 793 9.30e-147 450
Msa0125600 AT4G25350.1 33.505 776 477 9 2 772 1 742 1.31e-142 437
Msa0125600 AT2G03240.1 32.933 832 483 15 2 771 1 819 1.88e-139 431
Msa0125600 AT1G69480.2 33.164 787 481 14 2 765 1 765 2.85e-139 429
Msa0125600 AT1G69480.1 33.164 787 481 14 2 765 1 765 2.85e-139 429
Msa0125600 AT2G03260.1 31.941 814 499 14 2 771 1 803 5.04e-134 417
Msa0125600 AT1G35350.2 39.961 513 294 5 268 771 59 566 1.43e-129 397
Msa0125600 AT2G03260.2 38.058 515 307 4 267 771 78 590 4.14e-125 387
Msa0125600 AT1G26730.2 32.911 711 441 13 2 706 1 681 5.79e-115 364
Msa0125600 AT2G03250.1 29.322 723 467 15 2 707 1 696 6.33e-100 325
Msa0125600 AT2G03250.2 28.595 612 401 12 2 604 1 585 1.05e-74 254
Msa0125600 AT2G32295.1 28.342 374 223 17 424 772 98 451 1.21e-31 129
Msa0125600 AT2G32295.2 28.342 374 223 17 424 772 98 451 1.21e-31 129
Msa0125600 AT5G35730.1 27.515 338 220 12 424 747 102 428 1.70e-30 126

Find 139 sgRNAs with CRISPR-Local

Find 469 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAATTCTCATTGCCATTCT+AGG 0.174578 1_3:-54136668 None:intergenic
TATCCTTTATGCCATATTAT+TGG 0.198668 1_3:+54142094 Msa0125600:CDS
CACCCTCAAAACAACGTTTA+AGG 0.208521 1_3:-54142592 None:intergenic
TTGGCTTGCTCAAAACTTAT+AGG 0.228204 1_3:+54136849 Msa0125600:CDS
GTCAAATTTCTTCAATATCT+TGG 0.238858 1_3:-54137118 None:intergenic
CTCCTCCTTCGGCGTGGTTA+TGG 0.243700 1_3:-54133932 None:intergenic
TTGAAGTTTACCTTATAAAA+TGG 0.247316 1_3:-54141701 None:intergenic
ATCTCTAAGCCATGGATTTC+TGG 0.248145 1_3:-54142440 None:intergenic
CGGGATTCTGATTATTCATT+AGG 0.249123 1_3:+54136142 Msa0125600:CDS
GGCGAAGTGCTTTGTGAATA+TGG 0.251631 1_3:-54140170 None:intergenic
ACTTTCCCATGTTAGCTAAA+TGG 0.256879 1_3:-54142261 None:intergenic
TGCAACCACTGTTGTCATTA+AGG 0.259161 1_3:-54141360 None:intergenic
TATCATTTATAATTTGCTTT+AGG 0.270894 1_3:-54136054 None:intergenic
TAGATGATAACACATGTTAT+TGG 0.282445 1_3:-54142945 None:intergenic
ATGTTATCATGATCAGATTC+AGG 0.293820 1_3:-54134011 None:intergenic
TCACTCTGGAAGACTGTATA+TGG 0.300089 1_3:+54142056 Msa0125600:CDS
GATTCCATTGCTAAGGCATT+TGG 0.302519 1_3:+54141975 Msa0125600:intron
ATGAGAATCTTTATGTTGTT+GGG 0.307349 1_3:-54140230 None:intergenic
TCTCTTGTTTAATGTAAAAC+TGG 0.307997 1_3:-54135976 None:intergenic
CGCCAACAATGACAGGAAAA+AGG 0.314572 1_3:+54140189 Msa0125600:CDS
TTGCAGGAAGTGCATCAATT+TGG 0.321566 1_3:-54141430 None:intergenic
CTTTGGCAGCTCACTGAATA+TGG 0.322190 1_3:+54137086 Msa0125600:intron
TGCATAGCACGCCAATAATA+TGG 0.325310 1_3:-54142105 None:intergenic
ATTTACACTAGAAATATATT+AGG 0.326255 1_3:-54143110 None:intergenic
TCTGTATTATTTGCCTTTGT+TGG 0.332893 1_3:-54136097 None:intergenic
CAGCTATTACTAGCATGCTT+TGG 0.334532 1_3:+54136723 Msa0125600:CDS
TCTTAATTTGCAGAATGTTT+AGG 0.335433 1_3:+54136527 Msa0125600:intron
AAAGCAAAGAGAATTGAAAA+TGG 0.340353 1_3:-54133958 None:intergenic
TGATAACATAAATATCATTA+AGG 0.344335 1_3:+54134025 Msa0125600:CDS
GTGGAGCTCTATAGAGGCCT+TGG 0.346019 1_3:+54136830 Msa0125600:CDS
GCTCGAGTTGCATTTGTTCC+CGG 0.355428 1_3:-54136695 None:intergenic
CAACCACTTATCAACTCTAT+TGG 0.357066 1_3:+54142380 Msa0125600:CDS
TGCAGAATGTTTAGGAGATT+CGG 0.369539 1_3:+54136535 Msa0125600:intron
AACCACTTATCAACTCTATT+GGG 0.370941 1_3:+54142381 Msa0125600:CDS
AGCTATTACTAGCATGCTTT+GGG 0.372445 1_3:+54136724 Msa0125600:CDS
TTATTAGGTTCTTAGACTAA+TGG 0.374210 1_3:+54140135 Msa0125600:intron
AAACAAGAGAATGAATTCAT+TGG 0.375539 1_3:+54135989 Msa0125600:CDS
CCTTATCAGAACTAACGAAA+TGG 0.375830 1_3:-54139658 None:intergenic
ACGAATGCCTCCTTCCATTC+TGG 0.378946 1_3:-54133846 None:intergenic
TATGAGAATCTTTATGTTGT+TGG 0.379645 1_3:-54140231 None:intergenic
TATGCTTAAGTGATGTCCTT+GGG 0.382707 1_3:-54141313 None:intergenic
GTGAGGAAGAAAACCATAAA+AGG 0.387305 1_3:+54135743 Msa0125600:CDS
CCATTTCGTTAGTTCTGATA+AGG 0.398330 1_3:+54139658 Msa0125600:CDS
AACTACTAGTTGTAACCTAT+TGG 0.410734 1_3:+54141999 Msa0125600:CDS
CTTCCAGAGTGACAAGTCTC+AGG 0.411067 1_3:-54142045 None:intergenic
AGCCTGCACTTATTTATGTA+TGG 0.411360 1_3:+54141230 Msa0125600:CDS
AACAAGAGAATGAATTCATT+GGG 0.412131 1_3:+54135990 Msa0125600:CDS
GTCTCTGCAGGGTTGTCTAC+AGG 0.421744 1_3:+54140800 Msa0125600:intron
ACTTCCTGCAATATTACTTC+TGG 0.423000 1_3:+54141442 Msa0125600:CDS
AGCCATGGATTTCTGGAGTT+AGG 0.425098 1_3:-54142433 None:intergenic
ATAATTGTACAAGCTCTGTT+TGG 0.426330 1_3:-54135784 None:intergenic
AGGAGGCATTCGTGAACTAT+TGG 0.429457 1_3:+54133856 Msa0125600:CDS
CAGATTCAGGTGAGAGCTTG+AGG 0.442326 1_3:-54133998 None:intergenic
GTATTATTTGCCTTTGTTGG+CGG 0.447529 1_3:-54136094 None:intergenic
CTCGAGTTGCATTTGTTCCC+GGG 0.455117 1_3:-54136694 None:intergenic
CTAACCAGAAGTAATATTGC+AGG 0.460005 1_3:-54141446 None:intergenic
TCAGAATCTGTCTCTCGAAA+TGG 0.463930 1_3:-54142905 None:intergenic
CTTATCAGAACTAACGAAAT+GGG 0.470046 1_3:-54139657 None:intergenic
ACGCCAATAATATGGCATAA+AGG 0.472830 1_3:-54142097 None:intergenic
GGATGAAACAGTAGCGGGTC+GGG 0.473616 1_3:-54141652 None:intergenic
GAAAATGGAACCTCCTCCTT+CGG 0.473857 1_3:-54133943 None:intergenic
AGAGAAGAAAAGTGGGAATG+AGG 0.483526 1_3:-54133742 None:intergenic
GGCAATGAGAATTGATGTCC+CGG 0.486915 1_3:+54136676 Msa0125600:CDS
GAGGGCATTGGAATTTCTAC+AGG 0.487620 1_3:+54142706 Msa0125600:CDS
TATATAGAGAGAAGAAAAGT+GGG 0.488654 1_3:-54133749 None:intergenic
TAACATGGGAAAGTATGTTT+CGG 0.489749 1_3:+54142270 Msa0125600:CDS
AAGTTATTCGAAGAGGGCAT+TGG 0.491191 1_3:+54142694 Msa0125600:CDS
GACAACAGTGGTTGCAGCAA+TGG 0.492576 1_3:+54141367 Msa0125600:CDS
ACAACATAAAGATTCTCATA+TGG 0.498007 1_3:+54140234 Msa0125600:CDS
ATATATAGAGAGAAGAAAAG+TGG 0.502086 1_3:-54133750 None:intergenic
CTATGCTTAAGTGATGTCCT+TGG 0.502908 1_3:-54141314 None:intergenic
TTTCGGCGATGGTAGCAGCC+GGG 0.514299 1_3:+54142287 Msa0125600:CDS
GATTTAGTGAACAATCCAAC+AGG 0.519226 1_3:+54136749 Msa0125600:CDS
AGCACTTCGCCAACAATGAC+AGG 0.527144 1_3:+54140182 Msa0125600:CDS
ATCCATACATAAATAAGTGC+AGG 0.527262 1_3:-54141232 None:intergenic
AAAGAAAGGAAAGCCTAGAA+TGG 0.527856 1_3:+54136655 Msa0125600:CDS
GGCTGATCAACTAACTAGCC+AGG 0.528042 1_3:+54141841 Msa0125600:CDS
GTTTCGGCGATGGTAGCAGC+CGG 0.528660 1_3:+54142286 Msa0125600:CDS
TGTGAACCATTTAGCTAACA+TGG 0.530263 1_3:+54142255 Msa0125600:CDS
AGAAATTTCACATACAGAAG+AGG 0.536149 1_3:+54136571 Msa0125600:CDS
CACCCTGAGACTTGTCACTC+TGG 0.536341 1_3:+54142042 Msa0125600:CDS
GAGAATGAATTCATTGGGAG+AGG 0.538951 1_3:+54135995 Msa0125600:CDS
TGAGAATCTTTATGTTGTTG+GGG 0.542063 1_3:-54140229 None:intergenic
TTGTGAATGAAATCTCCTGT+TGG 0.543831 1_3:-54136764 None:intergenic
GTTTCCAAATGCCTTAGCAA+TGG 0.544525 1_3:-54141979 None:intergenic
ATCCCAATAGAGTTGATAAG+TGG 0.549202 1_3:-54142383 None:intergenic
CACTTGAAGTTATTCGAAGA+GGG 0.550159 1_3:+54142688 Msa0125600:CDS
TATTACTAGCATGCTTTGGG+AGG 0.550285 1_3:+54136727 Msa0125600:CDS
ACGGAACTGTCTTCACTGCT+CGG 0.550399 1_3:-54142880 None:intergenic
ATCCTGCAGCCCTTAAAAGA+AGG 0.553004 1_3:-54141397 None:intergenic
GGGAATGAGGTTATATGAAG+TGG 0.556456 1_3:-54133729 None:intergenic
GATAACACATGTTATTGGAA+TGG 0.557682 1_3:-54142940 None:intergenic
GAATACAGATTCCATTGCTA+AGG 0.561087 1_3:+54141968 Msa0125600:intron
CTTTCCCGCGTTCTCCAGCA+CGG 0.563353 1_3:+54136122 Msa0125600:CDS
CATAACCACGCCGAAGGAGG+AGG 0.563418 1_3:+54133933 Msa0125600:CDS
ACTAAGTCATCTCTAAGCCA+TGG 0.564904 1_3:-54142448 None:intergenic
AAGCTCAACTCATACCAGAA+TGG 0.565158 1_3:+54133832 Msa0125600:CDS
AAGAAAACCATAAAAGGCAG+TGG 0.567667 1_3:+54135749 Msa0125600:CDS
GAATAATCAGAATCCCGTGC+TGG 0.569715 1_3:-54136136 None:intergenic
ATATAAGCTGACTCATTGCT+AGG 0.573301 1_3:-54140884 None:intergenic
ACTATCATGCATTTCAAAGT+CGG 0.575527 1_3:+54142627 Msa0125600:CDS
AGATTCAGGTGAGAGCTTGA+GGG 0.580711 1_3:-54133997 None:intergenic
ATCCTAACTCCAGAAATCCA+TGG 0.587682 1_3:+54142431 Msa0125600:CDS
GGGAAAGTATGTTTCGGCGA+TGG 0.588314 1_3:+54142276 Msa0125600:CDS
TCAACTCATACCAGAATGGA+AGG 0.589083 1_3:+54133836 Msa0125600:CDS
GGAAGTGCATCAATTTGGCT+AGG 0.589297 1_3:-54141425 None:intergenic
GTTACAAGTGTGCGAGACGG+TGG 0.590064 1_3:+54142218 Msa0125600:intron
CAAAACCATAACCACGCCGA+AGG 0.591766 1_3:+54133927 Msa0125600:CDS
TTTCCCGCGTTCTCCAGCAC+GGG 0.592357 1_3:+54136123 Msa0125600:CDS
AATGAGCATCTAAATAATGT+CGG 0.593691 1_3:+54142851 Msa0125600:CDS
AACCATAACCACGCCGAAGG+AGG 0.596363 1_3:+54133930 Msa0125600:CDS
AGAAATGGTGAAATTCTCAA+AGG 0.597216 1_3:+54133803 Msa0125600:exon
GCTGTATGTTACTCTCGCCC+CGG 0.599822 1_3:-54142305 None:intergenic
TTCGGCGATGGTAGCAGCCG+GGG 0.604999 1_3:+54142288 Msa0125600:CDS
ATGGATGTAATCTATATATG+TGG 0.607621 1_3:+54141249 Msa0125600:CDS
AGTCTTAATCACTTCTGTAG+TGG 0.608252 1_3:+54142357 Msa0125600:CDS
TCTGTCTCTCGAAATGGTAA+CGG 0.611018 1_3:-54142899 None:intergenic
TTCCAGAGTGACAAGTCTCA+GGG 0.611456 1_3:-54142044 None:intergenic
TCTTAGACTAATGGACGAAG+TGG 0.615048 1_3:+54140144 Msa0125600:CDS
GAATCCCGTGCTGGAGAACG+CGG 0.615381 1_3:-54136127 None:intergenic
CGGATGAAACAGTAGCGGGT+CGG 0.620064 1_3:-54141653 None:intergenic
GACACGGATGAAACAGTAGC+GGG 0.621758 1_3:-54141657 None:intergenic
GCACTTGAAGTTATTCGAAG+AGG 0.623377 1_3:+54142687 Msa0125600:CDS
GTGAACCATTTAGCTAACAT+GGG 0.634733 1_3:+54142256 Msa0125600:CDS
ATGCTTAAGTGATGTCCTTG+GGG 0.641855 1_3:-54141312 None:intergenic
AATCCCGTGCTGGAGAACGC+GGG 0.646988 1_3:-54136126 None:intergenic
AGATTATGTTGCGAATGACA+CGG 0.653819 1_3:-54141673 None:intergenic
GCAATGAGAATTGATGTCCC+GGG 0.657527 1_3:+54136677 Msa0125600:CDS
TTTGTTACAAGTGTGCGAGA+CGG 0.662092 1_3:+54142215 Msa0125600:intron
GCAGACAAAGTGATCAGCTG+TGG 0.664837 1_3:+54142326 Msa0125600:CDS
GATATTGAAGAAATTTGACA+AGG 0.678129 1_3:+54137122 Msa0125600:CDS
AAATTATAAATGATAGACGA+CGG 0.683872 1_3:+54136062 Msa0125600:CDS
ATTGTAAAATGTAATCAACA+AGG 0.685399 1_3:+54143022 Msa0125600:three_prime_UTR
TGGAACCTCCTCCTTCGGCG+TGG 0.689910 1_3:-54133938 None:intergenic
CACTACCTTAATGACAACAG+TGG 0.704785 1_3:+54141355 Msa0125600:CDS
ACTCATACCAGAATGGAAGG+AGG 0.716098 1_3:+54133839 Msa0125600:CDS
GCTTGATGATGAGCTAAACA+AGG 0.730559 1_3:+54135949 Msa0125600:CDS
CAGAGTGACAAGTCTCAGGG+TGG 0.731138 1_3:-54142041 None:intergenic
TGACACGGATGAAACAGTAG+CGG 0.738243 1_3:-54141658 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATAAATCATTTACTAA+TGG + chr1_3:54134838-54134857 Msa0125600:intron 10.0%
!! AATATAAATCATTTACTAAT+GGG + chr1_3:54134839-54134858 Msa0125600:intron 10.0%
!!! ATTACATTTTTTTTTAAAGT+AGG - chr1_3:54135274-54135293 None:intergenic 10.0%
!!! AATATGAATATTTTTCTAAT+TGG + chr1_3:54135715-54135734 Msa0125600:intron 10.0%
!! ATAATTAACCAATTAAATTA+AGG + chr1_3:54138236-54138255 Msa0125600:intron 10.0%
!! ATATATACTTTAATCTATAT+TGG + chr1_3:54138459-54138478 Msa0125600:intron 10.0%
!! TATATACTTTAATCTATATT+GGG + chr1_3:54138460-54138479 Msa0125600:intron 10.0%
!! CATAATATATTTGTATAAAT+GGG - chr1_3:54138642-54138661 None:intergenic 10.0%
!! ATTATGGAATTATTATATTT+AGG + chr1_3:54138656-54138675 Msa0125600:intron 10.0%
!!! TTATAGTTTTAATAACTTTT+TGG + chr1_3:54140012-54140031 Msa0125600:intron 10.0%
!! TGATAACATAAATATCATTA+AGG + chr1_3:54134025-54134044 Msa0125600:CDS 15.0%
!! TATTGAGAAATATTAATTTC+TGG + chr1_3:54134075-54134094 Msa0125600:intron 15.0%
!!! TTCTATATTTTATCACATAA+TGG + chr1_3:54134161-54134180 Msa0125600:intron 15.0%
!! AAAAAAATGATAATAATTGG+TGG - chr1_3:54134700-54134719 None:intergenic 15.0%
!!! CCTATACTATATTATAATTT+TGG - chr1_3:54134878-54134897 None:intergenic 15.0%
!! CCAAAATTATAATATAGTAT+AGG + chr1_3:54134875-54134894 Msa0125600:intron 15.0%
!!! AAAAATTATTTCTTCATTCT+TGG - chr1_3:54134997-54135016 None:intergenic 15.0%
!! AATTTGATTATATTTCATTG+TGG + chr1_3:54135083-54135102 Msa0125600:intron 15.0%
!!! ATTTTCGACAATAATTAAAA+TGG - chr1_3:54135217-54135236 None:intergenic 15.0%
!!! GACATTATTATTCTTTAAAA+TGG - chr1_3:54135245-54135264 None:intergenic 15.0%
!!! TGATTAATATTTTTATCAAG+TGG + chr1_3:54135336-54135355 Msa0125600:intron 15.0%
!!! GATTAATATTTTTATCAAGT+GGG + chr1_3:54135337-54135356 Msa0125600:intron 15.0%
!!! ATTAATATTTTTATCAAGTG+GGG + chr1_3:54135338-54135357 Msa0125600:intron 15.0%
!! AAAATATGAATATCAGAATA+TGG + chr1_3:54135664-54135683 Msa0125600:intron 15.0%
!!! TATCATTTATAATTTGCTTT+AGG - chr1_3:54136057-54136076 None:intergenic 15.0%
!! AATAATATGGAAATCAAAAA+AGG - chr1_3:54136491-54136510 None:intergenic 15.0%
!! CATATTATTTAAGTATGAAT+GGG + chr1_3:54136502-54136521 Msa0125600:intron 15.0%
!! AATTATTAATTACCTAGAAA+AGG - chr1_3:54136933-54136952 None:intergenic 15.0%
!! ATTGTAAATATTGTGAATAT+CGG + chr1_3:54137278-54137297 Msa0125600:intron 15.0%
!! ATCAATTAGGAAAAAAAAAT+GGG - chr1_3:54137344-54137363 None:intergenic 15.0%
!! TATCAATTAGGAAAAAAAAA+TGG - chr1_3:54137345-54137364 None:intergenic 15.0%
!! TTTAGATGTATTTATCAATT+AGG - chr1_3:54137357-54137376 None:intergenic 15.0%
!! AATAAATAAAAAGTTGGAAT+GGG - chr1_3:54137980-54137999 None:intergenic 15.0%
!! TAATAAATAAAAAGTTGGAA+TGG - chr1_3:54137981-54138000 None:intergenic 15.0%
!! TCTCTTAATAAATAAAAAGT+TGG - chr1_3:54137986-54138005 None:intergenic 15.0%
!! TATAAAATCTAATTAAGCAT+TGG + chr1_3:54138365-54138384 Msa0125600:intron 15.0%
!! ATATACTTTAATCTATATTG+GGG + chr1_3:54138461-54138480 Msa0125600:intron 15.0%
!! CCATAATATATTTGTATAAA+TGG - chr1_3:54138643-54138662 None:intergenic 15.0%
!! CCATTTATACAAATATATTA+TGG + chr1_3:54138640-54138659 Msa0125600:intron 15.0%
!! TTTAAGCTAAAAATTGTAAA+GGG - chr1_3:54138840-54138859 None:intergenic 15.0%
!! ATTTAAGCTAAAAATTGTAA+AGG - chr1_3:54138841-54138860 None:intergenic 15.0%
!!! TTTACAATTTTTAGCTTAAA+TGG + chr1_3:54138840-54138859 Msa0125600:intron 15.0%
!! TAATGATTGTTAAATCATAA+TGG + chr1_3:54138901-54138920 Msa0125600:intron 15.0%
!! TATGTTTACTTGAATAATTT+GGG - chr1_3:54139054-54139073 None:intergenic 15.0%
!! TTATGTTTACTTGAATAATT+TGG - chr1_3:54139055-54139074 None:intergenic 15.0%
!! TAAATAATAATCAGGTATAA+GGG - chr1_3:54139413-54139432 None:intergenic 15.0%
!! TTAAATAATAATCAGGTATA+AGG - chr1_3:54139414-54139433 None:intergenic 15.0%
!! TCACAAATTAAATAATAATC+AGG - chr1_3:54139421-54139440 None:intergenic 15.0%
!!! TATGATTTAGTTCATATTAT+TGG - chr1_3:54139569-54139588 None:intergenic 15.0%
!!! TTTTAATAACTTTTTGGTTT+TGG + chr1_3:54140018-54140037 Msa0125600:intron 15.0%
!!! ACTTGTTAATTGATATTATT+AGG + chr1_3:54140120-54140139 Msa0125600:intron 15.0%
!! TAAGAAATAAATATGATTGA+AGG + chr1_3:54140537-54140556 Msa0125600:intron 15.0%
!!! TTTGAAATATTTTGTTTTGT+TGG + chr1_3:54140700-54140719 Msa0125600:intron 15.0%
!!! TTTCAGCAATTAATTTTTTT+AGG - chr1_3:54141135-54141154 None:intergenic 15.0%
!!! TTTATCTTTTAAACCATTTT+TGG + chr1_3:54141550-54141569 Msa0125600:intron 15.0%
!! AAAATTTCATGTTAATAACT+AGG - chr1_3:54141934-54141953 None:intergenic 15.0%
!!! TAACATGAAATTTTATGTTA+CGG + chr1_3:54141940-54141959 Msa0125600:intron 15.0%
!!! TCACTATTTAACAAATTTTA+AGG - chr1_3:54142779-54142798 None:intergenic 15.0%
!! AATATATTAGGAAAAAAATG+TGG - chr1_3:54143101-54143120 None:intergenic 15.0%
!!! GTATGATAATGCTATATATA+TGG - chr1_3:54134263-54134282 None:intergenic 20.0%
!! ATTCAAATTTCATTAGTTAG+AGG - chr1_3:54134303-54134322 None:intergenic 20.0%
!! AACTAATGAAATTTGAATCA+TGG + chr1_3:54134305-54134324 Msa0125600:intron 20.0%
!! ACAATATAATTACGTATGTA+TGG - chr1_3:54134540-54134559 None:intergenic 20.0%
!!! TCATTAATTTTAATTAGCCA+AGG + chr1_3:54134650-54134669 Msa0125600:intron 20.0%
!! AATGAATTGAAAATAATCCT+TGG - chr1_3:54134670-54134689 None:intergenic 20.0%
!! TGATATTATGTTAATACGAT+TGG - chr1_3:54134960-54134979 None:intergenic 20.0%
!! AATTATATCTTCATTCTTAG+AGG - chr1_3:54135067-54135086 None:intergenic 20.0%
!! CAAAAAAAGTAAGGAAAAAA+AGG - chr1_3:54135410-54135429 None:intergenic 20.0%
!!! TTTTTTCCTTACTTTTTTTG+TGG + chr1_3:54135410-54135429 Msa0125600:intron 20.0%
!!! TTTTTCCTTACTTTTTTTGT+GGG + chr1_3:54135411-54135430 Msa0125600:intron 20.0%
!!! AATATTTTTCTAATTGGTGT+AGG + chr1_3:54135721-54135740 Msa0125600:intron 20.0%
!! AAATTATAAATGATAGACGA+CGG + chr1_3:54136062-54136081 Msa0125600:CDS 20.0%
!! ATAATATGATAAGTGCTAAA+AGG + chr1_3:54136385-54136404 Msa0125600:intron 20.0%
!! CCATTCATACTTAAATAATA+TGG - chr1_3:54136504-54136523 None:intergenic 20.0%
!! CCATATTATTTAAGTATGAA+TGG + chr1_3:54136501-54136520 Msa0125600:intron 20.0%
!!! TAAAGAAGATGTGATATTTT+AGG - chr1_3:54137153-54137172 None:intergenic 20.0%
!! ATGCTGTTAAAAAGATATAT+CGG + chr1_3:54137306-54137325 Msa0125600:intron 20.0%
!!! AAAAGATATATCGGTTAAAA+TGG + chr1_3:54137315-54137334 Msa0125600:intron 20.0%
!!! AAAGATATATCGGTTAAAAT+GGG + chr1_3:54137316-54137335 Msa0125600:intron 20.0%
!! TTAGAGTAAAGACAAATAAA+AGG + chr1_3:54138057-54138076 Msa0125600:intron 20.0%
!! TTTATGACATAACCAAATTA+GGG - chr1_3:54138817-54138836 None:intergenic 20.0%
!!! TGTTATCTTTTTTAATCACA+AGG + chr1_3:54138998-54139017 Msa0125600:intron 20.0%
!!! GTTATCTTTTTTAATCACAA+GGG + chr1_3:54138999-54139018 Msa0125600:intron 20.0%
!! AAAATATTGAAGGGAATATT+CGG - chr1_3:54139689-54139708 None:intergenic 20.0%
!! AAAAGTGAAGACAAATAATA+TGG + chr1_3:54139732-54139751 Msa0125600:intron 20.0%
!!! TTCATTTAACGACAAATTTT+CGG - chr1_3:54139898-54139917 None:intergenic 20.0%
!! ATACTCAATTAAATTTACCA+TGG + chr1_3:54139926-54139945 Msa0125600:intron 20.0%
!! TTCTTTAATAATGTGCATAA+TGG + chr1_3:54140051-54140070 Msa0125600:intron 20.0%
!! TCTTTAATAATGTGCATAAT+GGG + chr1_3:54140052-54140071 Msa0125600:intron 20.0%
!! TATATTGTAGATTATAGTGT+TGG - chr1_3:54140428-54140447 None:intergenic 20.0%
!! CACTATAATCTACAATATAT+AGG + chr1_3:54140429-54140448 Msa0125600:intron 20.0%
!! TGAATAAATAAGCTAGATTT+AGG + chr1_3:54141488-54141507 Msa0125600:intron 20.0%
!! GGTTTAAAAGATAAATACTA+GGG - chr1_3:54141545-54141564 None:intergenic 20.0%
!! TGGTTTAAAAGATAAATACT+AGG - chr1_3:54141546-54141565 None:intergenic 20.0%
!! TTGAAGTTTACCTTATAAAA+TGG - chr1_3:54141704-54141723 None:intergenic 20.0%
!!! TTTTAATTTGTCTTTTCAAC+AGG + chr1_3:54141796-54141815 Msa0125600:intron 20.0%
!!! CACATAAGTTGATTTTTTTT+GGG + chr1_3:54141878-54141897 Msa0125600:intron 20.0%
!!! ACATAAGTTGATTTTTTTTG+GGG + chr1_3:54141879-54141898 Msa0125600:intron 20.0%
!! TAGGATGAATAATAAAGTAT+AGG - chr1_3:54141915-54141934 None:intergenic 20.0%
!!! TTTTAATATCAGAGTGATAT+TGG + chr1_3:54142561-54142580 Msa0125600:intron 20.0%
!! ATTGTAAAATGTAATCAACA+AGG + chr1_3:54143022-54143041 Msa0125600:three_prime_UTR 20.0%
! TATATAGAGAGAAGAAAAGT+GGG - chr1_3:54133752-54133771 None:intergenic 25.0%
! ATATATAGAGAGAAGAAAAG+TGG - chr1_3:54133753-54133772 None:intergenic 25.0%
!! TTTCTTTTTCTATATGGTGA+AGG - chr1_3:54133788-54133807 None:intergenic 25.0%
! TCACCATATAGAAAAAGAAA+TGG + chr1_3:54133788-54133807 Msa0125600:exon 25.0%
!! TCACCATTTCTTTTTCTATA+TGG - chr1_3:54133794-54133813 None:intergenic 25.0%
! AAAGCAAAGAGAATTGAAAA+TGG - chr1_3:54133961-54133980 None:intergenic 25.0%
! ATTTCATTAGTTAGAGGATA+AGG - chr1_3:54134297-54134316 None:intergenic 25.0%
! AATGAAATTTGAATCATGGT+TGG + chr1_3:54134309-54134328 Msa0125600:intron 25.0%
!! CTACTATTTGTGTTTCTATA+TGG - chr1_3:54134335-54134354 None:intergenic 25.0%
!! GTAGAATCATAACTTTAGAA+TGG + chr1_3:54134351-54134370 Msa0125600:intron 25.0%
! AATATCATTTCACATCACTA+GGG - chr1_3:54134400-54134419 None:intergenic 25.0%
! TAATATCATTTCACATCACT+AGG - chr1_3:54134401-54134420 None:intergenic 25.0%
! TGATGAACAAAATCTGTATT+AGG - chr1_3:54134923-54134942 None:intergenic 25.0%
! CACAATAATACAAGTCAATA+AGG + chr1_3:54135113-54135132 Msa0125600:intron 25.0%
!!! GGAAAAAAAGGCTTTAAAAA+GGG - chr1_3:54135398-54135417 None:intergenic 25.0%
!!! AGGAAAAAAAGGCTTTAAAA+AGG - chr1_3:54135399-54135418 None:intergenic 25.0%
! AAAAACCCACAAAAAAAGTA+AGG - chr1_3:54135419-54135438 None:intergenic 25.0%
!! AGAGCTTGTACAATTATTTT+CGG + chr1_3:54135790-54135809 Msa0125600:CDS 25.0%
!! GCTTAAATACTATGCATTTT+TGG + chr1_3:54135851-54135870 Msa0125600:intron 25.0%
!! TCTCTTGTTTAATGTAAAAC+TGG - chr1_3:54135979-54135998 None:intergenic 25.0%
! AAACAAGAGAATGAATTCAT+TGG + chr1_3:54135989-54136008 Msa0125600:CDS 25.0%
! AACAAGAGAATGAATTCATT+GGG + chr1_3:54135990-54136009 Msa0125600:CDS 25.0%
! GAATTTACTATTGTCTACAA+AGG - chr1_3:54136194-54136213 None:intergenic 25.0%
!!! TCTTAATTTGCAGAATGTTT+AGG + chr1_3:54136527-54136546 Msa0125600:intron 25.0%
!! GAATTTCTAAAAATAGCATG+TGG + chr1_3:54136982-54137001 Msa0125600:intron 25.0%
! GTCAAATTTCTTCAATATCT+TGG - chr1_3:54137121-54137140 None:intergenic 25.0%
! GATATTGAAGAAATTTGACA+AGG + chr1_3:54137122-54137141 Msa0125600:CDS 25.0%
!! TATCACATCTTCTTTACTTT+TGG + chr1_3:54137157-54137176 Msa0125600:intron 25.0%
! TTTCATTCATTTGAATGCAT+AGG + chr1_3:54137237-54137256 Msa0125600:intron 25.0%
! TTCATTCATTTGAATGCATA+GGG + chr1_3:54137238-54137257 Msa0125600:intron 25.0%
! TACAATATCAAGTACCAATT+TGG - chr1_3:54137264-54137283 None:intergenic 25.0%
! CATCTAAATATGTAAAGTCT+TGG + chr1_3:54137369-54137388 Msa0125600:intron 25.0%
! ATTTATAAAGAGACAATGTC+TGG - chr1_3:54137501-54137520 None:intergenic 25.0%
! ATTTATAAAGAGACAATGTC+TGG - chr1_3:54137501-54137520 None:intergenic 25.0%
!!! AAATGATGAACTATTTTGAC+CGG + chr1_3:54137929-54137948 Msa0125600:intron 25.0%
! TTCATGAATAGTGTGATAAA+TGG - chr1_3:54138104-54138123 None:intergenic 25.0%
!! AGGTATAGTTTTCTCAATTA+TGG - chr1_3:54138173-54138192 None:intergenic 25.0%
! GTTACGTTCCTTAATTTAAT+TGG - chr1_3:54138247-54138266 None:intergenic 25.0%
! ATGACTTTATCACTCAAAAT+GGG - chr1_3:54138301-54138320 None:intergenic 25.0%
! TATGACTTTATCACTCAAAA+TGG - chr1_3:54138302-54138321 None:intergenic 25.0%
! ATCTAAGCTTTCTATGAATA+TGG - chr1_3:54138579-54138598 None:intergenic 25.0%
! GGAATTATTATATTTAGGCA+TGG + chr1_3:54138661-54138680 Msa0125600:intron 25.0%
! AGACACACAAAAATTGAAAT+GGG - chr1_3:54138717-54138736 None:intergenic 25.0%
! AAGACACACAAAAATTGAAA+TGG - chr1_3:54138718-54138737 None:intergenic 25.0%
! TTACATAATTAGCCCTAATT+TGG + chr1_3:54138802-54138821 Msa0125600:intron 25.0%
! GTTTATGACATAACCAAATT+AGG - chr1_3:54138818-54138837 None:intergenic 25.0%
! TAATAAAACTAACCCTAGTT+TGG + chr1_3:54139335-54139354 Msa0125600:intron 25.0%
! ACTATAATTGTTCATTTGCT+TGG + chr1_3:54139464-54139483 Msa0125600:intron 25.0%
!! AATAACTTGAAGAAGCTTTT+TGG - chr1_3:54139619-54139638 None:intergenic 25.0%
!! AATATTTTCAAAGCTGCATT+TGG + chr1_3:54139701-54139720 Msa0125600:intron 25.0%
!! ATATTTTCAAAGCTGCATTT+GGG + chr1_3:54139702-54139721 Msa0125600:intron 25.0%
!! TTTTATATAATCGCAACATC+CGG + chr1_3:54139778-54139797 Msa0125600:intron 25.0%
!!! TTAAATCAGGTTTTAAACCA+TGG - chr1_3:54139946-54139965 None:intergenic 25.0%
!! TGATTTAATCAAGTGTCATT+CGG + chr1_3:54139958-54139977 Msa0125600:intron 25.0%
! GATAATCTAATATGTTGCTA+TGG + chr1_3:54140086-54140105 Msa0125600:intron 25.0%
! TTATTAGGTTCTTAGACTAA+TGG + chr1_3:54140135-54140154 Msa0125600:intron 25.0%
! ATGAGAATCTTTATGTTGTT+GGG - chr1_3:54140233-54140252 None:intergenic 25.0%
! TATGAGAATCTTTATGTTGT+TGG - chr1_3:54140234-54140253 None:intergenic 25.0%
! ACAACATAAAGATTCTCATA+TGG + chr1_3:54140234-54140253 Msa0125600:CDS 25.0%
! TTTCTTGTCGGTAAATATAA+TGG + chr1_3:54140262-54140281 Msa0125600:intron 25.0%
!! ATAATTTTGTACCTGAAAAC+AGG - chr1_3:54140923-54140942 None:intergenic 25.0%
! TATTAAGTGTGTCTATTTCA+TGG - chr1_3:54141088-54141107 None:intergenic 25.0%
!! CTTTTGTGATGTAGATATTT+TGG - chr1_3:54141166-54141185 None:intergenic 25.0%
! ATGGATGTAATCTATATATG+TGG + chr1_3:54141249-54141268 Msa0125600:CDS 25.0%
! AACTTCAATTATCTTCTAAC+AGG + chr1_3:54141722-54141741 Msa0125600:intron 25.0%
!!! GCACATAAGTTGATTTTTTT+TGG + chr1_3:54141877-54141896 Msa0125600:intron 25.0%
!!! TTTTGAAAACTTTAGCCAAT+AGG - chr1_3:54142017-54142036 None:intergenic 25.0%
! TATCCTTTATGCCATATTAT+TGG + chr1_3:54142094-54142113 Msa0125600:CDS 25.0%
! AACTTTGTTAATTTCTGAAC+AGG + chr1_3:54142822-54142841 Msa0125600:intron 25.0%
! AATGAGCATCTAAATAATGT+CGG + chr1_3:54142851-54142870 Msa0125600:CDS 25.0%
! TAGATGATAACACATGTTAT+TGG - chr1_3:54142948-54142967 None:intergenic 25.0%
! TTTTTCTATATGGTGAAGGA+AGG - chr1_3:54133784-54133803 None:intergenic 30.0%
AGAAATGGTGAAATTCTCAA+AGG + chr1_3:54133803-54133822 Msa0125600:exon 30.0%
ATGTTATCATGATCAGATTC+AGG - chr1_3:54134014-54134033 None:intergenic 30.0%
TAATGCTATATATATGGACG+TGG - chr1_3:54134257-54134276 None:intergenic 30.0%
GCATTATCATACACTAAATG+TGG + chr1_3:54134271-54134290 Msa0125600:intron 30.0%
!! TCATAACTTTAGAATGGTTG+AGG + chr1_3:54134357-54134376 Msa0125600:intron 30.0%
ACGCACATCAATTATTATCA+TGG + chr1_3:54134722-54134741 Msa0125600:intron 30.0%
ATTTACTAATGGGATTGCTA+TGG + chr1_3:54134849-54134868 Msa0125600:intron 30.0%
! TACGATTGGTTGTATGTATA+AGG - chr1_3:54134946-54134965 None:intergenic 30.0%
! TCAATAAGGTGTCATCTTAA+TGG + chr1_3:54135127-54135146 Msa0125600:intron 30.0%
! ATTTTTATCAAGTGGGGTTA+AGG + chr1_3:54135344-54135363 Msa0125600:intron 30.0%
TTAAGGCCTCTAATTAAAGT+GGG + chr1_3:54135361-54135380 Msa0125600:intron 30.0%
ACTAAACCCACTTTAATTAG+AGG - chr1_3:54135370-54135389 None:intergenic 30.0%
! TCTAATTAAAGTGGGTTTAG+TGG + chr1_3:54135369-54135388 Msa0125600:intron 30.0%
!! AAAAAAGGCTTTAAAAAGGG+AGG - chr1_3:54135395-54135414 None:intergenic 30.0%
ATAATTGTACAAGCTCTGTT+TGG - chr1_3:54135787-54135806 None:intergenic 30.0%
! TGTACAATTATTTTCGGAAG+AGG + chr1_3:54135796-54135815 Msa0125600:CDS 30.0%
! ATATCCTTTTTACTGTTCAC+AGG + chr1_3:54135907-54135926 Msa0125600:intron 30.0%
TCTGTATTATTTGCCTTTGT+TGG - chr1_3:54136100-54136119 None:intergenic 30.0%
AGAAATTTCACATACAGAAG+AGG + chr1_3:54136571-54136590 Msa0125600:CDS 30.0%
ATAGCAAGCTTAGAGAAAAA+TGG + chr1_3:54136596-54136615 Msa0125600:CDS 30.0%
! ATTTTGTGAATTCAGCAATG+AGG + chr1_3:54136624-54136643 Msa0125600:CDS 30.0%
ATGAGGACAAAAACAAAGAA+AGG + chr1_3:54136641-54136660 Msa0125600:CDS 30.0%
!!! AATGATTAGAAGTGCTTTTG+TGG + chr1_3:54136811-54136830 Msa0125600:CDS 30.0%
! TTCACTAATCTTCCTTTTCT+AGG + chr1_3:54136918-54136937 Msa0125600:intron 30.0%
TCGTTTATAGTTTAGGAATG+AGG - chr1_3:54137027-54137046 None:intergenic 30.0%
GAAACAGTCGTTTATAGTTT+AGG - chr1_3:54137034-54137053 None:intergenic 30.0%
CTAATTACATTCTCTCACTT+TGG + chr1_3:54137069-54137088 Msa0125600:intron 30.0%
TGAAGAAATTTGACAAGGTA+AGG + chr1_3:54137127-54137146 Msa0125600:intron 30.0%
TGACTTTATCACTCAAAATG+GGG - chr1_3:54138300-54138319 None:intergenic 30.0%
!! GTTGACTTGATTGGAAATAT+TGG - chr1_3:54138934-54138953 None:intergenic 30.0%
!! TTGACTAATGTTGACTTGAT+TGG - chr1_3:54138943-54138962 None:intergenic 30.0%
AATCAAGTGATTTGACTCAA+TGG - chr1_3:54138979-54138998 None:intergenic 30.0%
! CTTTTGCTTATATTAGTGAC+CGG - chr1_3:54139254-54139273 None:intergenic 30.0%
! CTTTTGCTTATATTAGTGAC+CGG + chr1_3:54139254-54139273 Msa0125600:intron 30.0%
CTTATCAGAACTAACGAAAT+GGG - chr1_3:54139660-54139679 None:intergenic 30.0%
!! GCAGCTTTGAAAATATTGAA+GGG - chr1_3:54139698-54139717 None:intergenic 30.0%
!! TGCAGCTTTGAAAATATTGA+AGG - chr1_3:54139699-54139718 None:intergenic 30.0%
! TATTTTCAAAGCTGCATTTG+GGG + chr1_3:54139703-54139722 Msa0125600:intron 30.0%
!! TATTTTTGCACGTGATTAAC+CGG - chr1_3:54139800-54139819 None:intergenic 30.0%
GTTAATCACGTGCAAAAATA+TGG + chr1_3:54139800-54139819 Msa0125600:intron 30.0%
!!! CGAACTAACCATATTTTTTG+CGG + chr1_3:54139859-54139878 Msa0125600:intron 30.0%
TTAATCTGCCGCAAAAAATA+TGG - chr1_3:54139870-54139889 None:intergenic 30.0%
GAATGACACTTGATTAAATC+AGG - chr1_3:54139959-54139978 None:intergenic 30.0%
! GATTTAATCAAGTGTCATTC+GGG + chr1_3:54139959-54139978 Msa0125600:intron 30.0%
ATTCGGGTGTAAAAAAAATG+TGG + chr1_3:54139975-54139994 Msa0125600:intron 30.0%
TTCGGGTGTAAAAAAAATGT+GGG + chr1_3:54139976-54139995 Msa0125600:intron 30.0%
TGAGAATCTTTATGTTGTTG+GGG - chr1_3:54140232-54140251 None:intergenic 30.0%
!! ATCAAAAGTGCCCTTAATTA+AGG - chr1_3:54140303-54140322 None:intergenic 30.0%
AACTTGCAATGCAATATATG+AGG + chr1_3:54140387-54140406 Msa0125600:intron 30.0%
! AATTAGTATGGTTTGGAGTT+TGG + chr1_3:54140658-54140677 Msa0125600:intron 30.0%
! GTTTTGTGTATACGCAATAT+TGG + chr1_3:54140838-54140857 Msa0125600:CDS 30.0%
! AAAATGTCTATCCTGTTTTC+AGG + chr1_3:54140909-54140928 Msa0125600:CDS 30.0%
ATCCATACATAAATAAGTGC+AGG - chr1_3:54141235-54141254 None:intergenic 30.0%
! AATCTGCTCACCATTTTATA+AGG + chr1_3:54141691-54141710 Msa0125600:CDS 30.0%
TCAATTATCTTCTAACAGGT+TGG + chr1_3:54141726-54141745 Msa0125600:intron 30.0%
!!! TCTGCTAGTAGACTTTTTTA+TGG + chr1_3:54141820-54141839 Msa0125600:CDS 30.0%
AACTACTAGTTGTAACCTAT+TGG + chr1_3:54141999-54142018 Msa0125600:CDS 30.0%
! ACATTTTCTGAATCTTGTAG+AGG - chr1_3:54142137-54142156 None:intergenic 30.0%
! TAACATGGGAAAGTATGTTT+CGG + chr1_3:54142270-54142289 Msa0125600:CDS 30.0%
AACCACTTATCAACTCTATT+GGG + chr1_3:54142381-54142400 Msa0125600:CDS 30.0%
! ACTCTATTGGGATTTTATCA+AGG + chr1_3:54142393-54142412 Msa0125600:CDS 30.0%
! ATTGGGATTTTATCAAGGAT+TGG + chr1_3:54142398-54142417 Msa0125600:CDS 30.0%
! TTGGGATTTTATCAAGGATT+GGG + chr1_3:54142399-54142418 Msa0125600:CDS 30.0%
GTAAGTTCTCTATCTCTTAA+TGG + chr1_3:54142505-54142524 Msa0125600:intron 30.0%
ACTATCATGCATTTCAAAGT+CGG + chr1_3:54142627-54142646 Msa0125600:CDS 30.0%
! CCAATCTCTAAGAATCTAAA+AGG - chr1_3:54142755-54142774 None:intergenic 30.0%
! CCTTTTAGATTCTTAGAGAT+TGG + chr1_3:54142752-54142771 Msa0125600:intron 30.0%
TTGTTAATTTCTGAACAGGT+TGG + chr1_3:54142826-54142845 Msa0125600:intron 30.0%
GATAACACATGTTATTGGAA+TGG - chr1_3:54142943-54142962 None:intergenic 30.0%
TGTCCAAAATGTTATGCACA+CGG + chr1_3:54134100-54134119 Msa0125600:intron 35.0%
AAGATACGCACTAACAAAGA+AGG - chr1_3:54134214-54134233 None:intergenic 35.0%
AGACAAGATCACTATGATTG+TGG + chr1_3:54134479-54134498 Msa0125600:intron 35.0%
TATGATTGTGGAGTGATTCA+AGG + chr1_3:54134491-54134510 Msa0125600:intron 35.0%
ATCTTCATTCTTAGAGGACA+TGG - chr1_3:54135061-54135080 None:intergenic 35.0%
GTTAAGGCCTCTAATTAAAG+TGG + chr1_3:54135360-54135379 Msa0125600:intron 35.0%
! TTTTCTAATTGGTGTAGGTG+AGG + chr1_3:54135726-54135745 Msa0125600:intron 35.0%
GTGAGGAAGAAAACCATAAA+AGG + chr1_3:54135743-54135762 Msa0125600:CDS 35.0%
AAGAAAACCATAAAAGGCAG+TGG + chr1_3:54135749-54135768 Msa0125600:CDS 35.0%
! ATTATTTTCGGAAGAGGATG+AGG + chr1_3:54135802-54135821 Msa0125600:CDS 35.0%
GAAAAAATATCCGCCAACAA+AGG + chr1_3:54136084-54136103 Msa0125600:CDS 35.0%
GTATTATTTGCCTTTGTTGG+CGG - chr1_3:54136097-54136116 None:intergenic 35.0%
CGGGATTCTGATTATTCATT+AGG + chr1_3:54136142-54136161 Msa0125600:CDS 35.0%
TGCAGAATGTTTAGGAGATT+CGG + chr1_3:54136535-54136554 Msa0125600:intron 35.0%
AAAGAAAGGAAAGCCTAGAA+TGG + chr1_3:54136655-54136674 Msa0125600:CDS 35.0%
TCAATTCTCATTGCCATTCT+AGG - chr1_3:54136671-54136690 None:intergenic 35.0%
AGCTATTACTAGCATGCTTT+GGG + chr1_3:54136724-54136743 Msa0125600:CDS 35.0%
GATTTAGTGAACAATCCAAC+AGG + chr1_3:54136749-54136768 Msa0125600:CDS 35.0%
TTGTGAATGAAATCTCCTGT+TGG - chr1_3:54136767-54136786 None:intergenic 35.0%
!!! TATAAGTTTTGAGCAAGCCA+AGG - chr1_3:54136850-54136869 None:intergenic 35.0%
!! TTGGCTTGCTCAAAACTTAT+AGG + chr1_3:54136849-54136868 Msa0125600:CDS 35.0%
CTATAAGTACATGTCTGCAT+AGG + chr1_3:54137184-54137203 Msa0125600:intron 35.0%
CATAGGCAAACACACATAAA+GGG + chr1_3:54137201-54137220 Msa0125600:intron 35.0%
AAAAGTTGGAATGGGCAAAT+TGG - chr1_3:54137972-54137991 None:intergenic 35.0%
AAACTACTCTACTCGTATGA+TGG + chr1_3:54138123-54138142 Msa0125600:intron 35.0%
! GGCGACTTAATTTGGAAATT+AGG - chr1_3:54138193-54138212 None:intergenic 35.0%
CAAGTATAGGCGACTTAATT+TGG - chr1_3:54138201-54138220 None:intergenic 35.0%
TAAATGGGATAAAAGCTTCC+TGG - chr1_3:54138627-54138646 None:intergenic 35.0%
TAATTTGGGCTTTCTTCTCT+CGG - chr1_3:54139040-54139059 None:intergenic 35.0%
ACGAGATATTGTCCAAACTA+GGG - chr1_3:54139350-54139369 None:intergenic 35.0%
AACGAGATATTGTCCAAACT+AGG - chr1_3:54139351-54139370 None:intergenic 35.0%
ATTGTTCATTTGCTTGGCAT+TGG + chr1_3:54139470-54139489 Msa0125600:intron 35.0%
CCTTATCAGAACTAACGAAA+TGG - chr1_3:54139661-54139680 None:intergenic 35.0%
!! CCATTTCGTTAGTTCTGATA+AGG + chr1_3:54139658-54139677 Msa0125600:CDS 35.0%
ATCACGTGCAAAAATATGGT+TGG + chr1_3:54139804-54139823 Msa0125600:intron 35.0%
!!! CATATGGTCACTTTTCTTGT+CGG + chr1_3:54140250-54140269 Msa0125600:CDS 35.0%
TCTCTGTCTCACCTTAATTA+AGG + chr1_3:54140289-54140308 Msa0125600:intron 35.0%
CTCTGTCTCACCTTAATTAA+GGG + chr1_3:54140290-54140309 Msa0125600:intron 35.0%
! TAGCGCAGCAAAATTTTACT+TGG - chr1_3:54140455-54140474 None:intergenic 35.0%
GTATTTGTCTTAGTGCTTCA+TGG - chr1_3:54140486-54140505 None:intergenic 35.0%
CAAGTAACCGCTAATTAGTA+TGG + chr1_3:54140646-54140665 Msa0125600:intron 35.0%
AACCGCTAATTAGTATGGTT+TGG + chr1_3:54140651-54140670 Msa0125600:intron 35.0%
CTCCAAACCATACTAATTAG+CGG - chr1_3:54140656-54140675 None:intergenic 35.0%
! ATATAAGCTGACTCATTGCT+AGG - chr1_3:54140887-54140906 None:intergenic 35.0%
!! CTACATCACAAAAGTGCTAA+TGG + chr1_3:54141172-54141191 Msa0125600:intron 35.0%
AGCCTGCACTTATTTATGTA+TGG + chr1_3:54141230-54141249 Msa0125600:CDS 35.0%
!! TCATTTTTGAATTCTCCCCA+AGG + chr1_3:54141297-54141316 Msa0125600:CDS 35.0%
TATGCTTAAGTGATGTCCTT+GGG - chr1_3:54141316-54141335 None:intergenic 35.0%
! TGGTTATGCACCTTCTTTTA+AGG + chr1_3:54141387-54141406 Msa0125600:CDS 35.0%
! GGTTATGCACCTTCTTTTAA+GGG + chr1_3:54141388-54141407 Msa0125600:CDS 35.0%
ACTTCCTGCAATATTACTTC+TGG + chr1_3:54141442-54141461 Msa0125600:CDS 35.0%
CTAACCAGAAGTAATATTGC+AGG - chr1_3:54141449-54141468 None:intergenic 35.0%
AGCACAAATGTGTCCAAAAA+TGG - chr1_3:54141566-54141585 None:intergenic 35.0%
AGATTATGTTGCGAATGACA+CGG - chr1_3:54141676-54141695 None:intergenic 35.0%
TGTGCACAAATATAATCACC+TGG - chr1_3:54141862-54141881 None:intergenic 35.0%
GAATACAGATTCCATTGCTA+AGG + chr1_3:54141968-54141987 Msa0125600:intron 35.0%
ACGCCAATAATATGGCATAA+AGG - chr1_3:54142100-54142119 None:intergenic 35.0%
TGTGAACCATTTAGCTAACA+TGG + chr1_3:54142255-54142274 Msa0125600:CDS 35.0%
GTGAACCATTTAGCTAACAT+GGG + chr1_3:54142256-54142275 Msa0125600:CDS 35.0%
ACTTTCCCATGTTAGCTAAA+TGG - chr1_3:54142264-54142283 None:intergenic 35.0%
AGTCTTAATCACTTCTGTAG+TGG + chr1_3:54142357-54142376 Msa0125600:CDS 35.0%
CAACCACTTATCAACTCTAT+TGG + chr1_3:54142380-54142399 Msa0125600:CDS 35.0%
!! ATCCCAATAGAGTTGATAAG+TGG - chr1_3:54142386-54142405 None:intergenic 35.0%
! TGGGATTTTATCAAGGATTG+GGG + chr1_3:54142400-54142419 Msa0125600:CDS 35.0%
CACTTGAAGTTATTCGAAGA+GGG + chr1_3:54142688-54142707 Msa0125600:CDS 35.0%
AGAGAAGAAAAGTGGGAATG+AGG - chr1_3:54133745-54133764 None:intergenic 40.0%
AAGCTCAACTCATACCAGAA+TGG + chr1_3:54133832-54133851 Msa0125600:CDS 40.0%
TCAACTCATACCAGAATGGA+AGG + chr1_3:54133836-54133855 Msa0125600:CDS 40.0%
! TCACCGTGTGCATAACATTT+TGG - chr1_3:54134106-54134125 None:intergenic 40.0%
ATGGACGTGGAAGAAATCTT+TGG - chr1_3:54134244-54134263 None:intergenic 40.0%
! GATTCAAGGAGGTATGTATG+CGG + chr1_3:54134505-54134524 Msa0125600:intron 40.0%
CTCTCTATTAGCACGTGAAA+TGG + chr1_3:54135491-54135510 Msa0125600:intron 40.0%
! TTCTTCTCCACTGCCTTTTA+TGG - chr1_3:54135759-54135778 None:intergenic 40.0%
CAAGCATCCCAAAAAACACA+CGG - chr1_3:54135934-54135953 None:intergenic 40.0%
!! GCTTGATGATGAGCTAAACA+AGG + chr1_3:54135949-54135968 Msa0125600:CDS 40.0%
GAGAATGAATTCATTGGGAG+AGG + chr1_3:54135995-54136014 Msa0125600:CDS 40.0%
CAGCTATTACTAGCATGCTT+TGG + chr1_3:54136723-54136742 Msa0125600:CDS 40.0%
! TATTACTAGCATGCTTTGGG+AGG + chr1_3:54136727-54136746 Msa0125600:CDS 40.0%
GCATAGGCAAACACACATAA+AGG + chr1_3:54137200-54137219 Msa0125600:intron 40.0%
TTGAATGCATAGGGCCAAAT+TGG + chr1_3:54137247-54137266 Msa0125600:intron 40.0%
TAGCTCACCTAAATTGACAC+CGG + chr1_3:54137742-54137761 Msa0125600:intron 40.0%
! ATTCTCTCCGGTGTCAATTT+AGG - chr1_3:54137752-54137771 None:intergenic 40.0%
TCATATTGCACAGCCCAATT+GGG - chr1_3:54137836-54137855 None:intergenic 40.0%
!!! TGATGAACTATTTTGACCGG+TGG + chr1_3:54137932-54137951 Msa0125600:intron 40.0%
GGTCTATGAATTGTAACCAC+CGG - chr1_3:54137951-54137970 None:intergenic 40.0%
GTATTGCGTCTCTCAAGTAT+AGG - chr1_3:54138214-54138233 None:intergenic 40.0%
CTCAAAATGGGGAATGAGAA+GGG - chr1_3:54138289-54138308 None:intergenic 40.0%
ACTCAAAATGGGGAATGAGA+AGG - chr1_3:54138290-54138309 None:intergenic 40.0%
CAAGTGATTTGACTCAATGG+TGG - chr1_3:54138976-54138995 None:intergenic 40.0%
AATTTGGGCTTTCTTCTCTC+GGG - chr1_3:54139039-54139058 None:intergenic 40.0%
TGACTATCATATACACCCTC+CGG + chr1_3:54139124-54139143 Msa0125600:intron 40.0%
TGCTTATATTAGTGACCGGA+GGG - chr1_3:54139258-54139277 None:intergenic 40.0%
TTGCTTATATTAGTGACCGG+AGG - chr1_3:54139257-54139276 None:intergenic 40.0%
TTGCTTATATTAGTGACCGG+AGG + chr1_3:54139257-54139276 Msa0125600:intron 40.0%
TGCTTATATTAGTGACCGGA+GGG + chr1_3:54139258-54139277 Msa0125600:intron 40.0%
AACATCAATACTACACCCTC+CGG - chr1_3:54139276-54139295 None:intergenic 40.0%
GGACAATATCTCGTTACGAA+TGG + chr1_3:54139356-54139375 Msa0125600:intron 40.0%
ATATTGCCATGTGATCAAGC+AGG + chr1_3:54139586-54139605 Msa0125600:intron 40.0%
! TCTTAGACTAATGGACGAAG+TGG + chr1_3:54140144-54140163 Msa0125600:CDS 40.0%
! TGCCTTTTTCCTGTCATTGT+TGG - chr1_3:54140194-54140213 None:intergenic 40.0%
! TGCATTGCAAGTTGAACTGA+GGG - chr1_3:54140380-54140399 None:intergenic 40.0%
! TTGCATTGCAAGTTGAACTG+AGG - chr1_3:54140381-54140400 None:intergenic 40.0%
ATGCTTAAGTGATGTCCTTG+GGG - chr1_3:54141315-54141334 None:intergenic 40.0%
CTATGCTTAAGTGATGTCCT+TGG - chr1_3:54141317-54141336 None:intergenic 40.0%
CACTACCTTAATGACAACAG+TGG + chr1_3:54141355-54141374 Msa0125600:CDS 40.0%
TGCAACCACTGTTGTCATTA+AGG - chr1_3:54141363-54141382 None:intergenic 40.0%
! TTGCAGGAAGTGCATCAATT+TGG - chr1_3:54141433-54141452 None:intergenic 40.0%
! GATTCCATTGCTAAGGCATT+TGG + chr1_3:54141975-54141994 Msa0125600:intron 40.0%
GTTTCCAAATGCCTTAGCAA+TGG - chr1_3:54141982-54142001 None:intergenic 40.0%
! TCACTCTGGAAGACTGTATA+TGG + chr1_3:54142056-54142075 Msa0125600:CDS 40.0%
TGCATAGCACGCCAATAATA+TGG - chr1_3:54142108-54142127 None:intergenic 40.0%
TTTGTTACAAGTGTGCGAGA+CGG + chr1_3:54142215-54142234 Msa0125600:intron 40.0%
ATCCTAACTCCAGAAATCCA+TGG + chr1_3:54142431-54142450 Msa0125600:CDS 40.0%
ATCTCTAAGCCATGGATTTC+TGG - chr1_3:54142443-54142462 None:intergenic 40.0%
ACTAAGTCATCTCTAAGCCA+TGG - chr1_3:54142451-54142470 None:intergenic 40.0%
TCAGAGTGATATTGGATTGC+AGG + chr1_3:54142569-54142588 Msa0125600:intron 40.0%
!! AGGCCTTAAACGTTGTTTTG+AGG + chr1_3:54142589-54142608 Msa0125600:intron 40.0%
!!! GGCCTTAAACGTTGTTTTGA+GGG + chr1_3:54142590-54142609 Msa0125600:intron 40.0%
CACCCTCAAAACAACGTTTA+AGG - chr1_3:54142595-54142614 None:intergenic 40.0%
! GCGACTGCTAGAATTTTTGT+TGG + chr1_3:54142662-54142681 Msa0125600:CDS 40.0%
GCACTTGAAGTTATTCGAAG+AGG + chr1_3:54142687-54142706 Msa0125600:CDS 40.0%
! AAGTTATTCGAAGAGGGCAT+TGG + chr1_3:54142694-54142713 Msa0125600:CDS 40.0%
TCTGTCTCTCGAAATGGTAA+CGG - chr1_3:54142902-54142921 None:intergenic 40.0%
TCAGAATCTGTCTCTCGAAA+TGG - chr1_3:54142908-54142927 None:intergenic 40.0%
ACTCATACCAGAATGGAAGG+AGG + chr1_3:54133839-54133858 Msa0125600:CDS 45.0%
!! AGGAGGCATTCGTGAACTAT+TGG + chr1_3:54133856-54133875 Msa0125600:CDS 45.0%
!! GCGTGGTTATGGTTTTGCTT+TGG - chr1_3:54133924-54133943 None:intergenic 45.0%
GAAAATGGAACCTCCTCCTT+CGG - chr1_3:54133946-54133965 None:intergenic 45.0%
AGATTCAGGTGAGAGCTTGA+GGG - chr1_3:54134000-54134019 None:intergenic 45.0%
TTATGCACACGGTGAAAGCA+TGG + chr1_3:54134111-54134130 Msa0125600:intron 45.0%
GATTGTGGAGTGATTCAAGG+AGG + chr1_3:54134494-54134513 Msa0125600:intron 45.0%
! TTTTCGGAAGAGGATGAGGT+AGG + chr1_3:54135806-54135825 Msa0125600:intron 45.0%
TTTCGGAAGAGGATGAGGTA+GGG + chr1_3:54135807-54135826 Msa0125600:intron 45.0%
CGGACCTGTGAACAGTAAAA+AGG - chr1_3:54135914-54135933 None:intergenic 45.0%
!!! TCACAGGTCCGTGTGTTTTT+TGG + chr1_3:54135923-54135942 Msa0125600:intron 45.0%
!!! CACAGGTCCGTGTGTTTTTT+GGG + chr1_3:54135924-54135943 Msa0125600:intron 45.0%
GAATAATCAGAATCCCGTGC+TGG - chr1_3:54136139-54136158 None:intergenic 45.0%
GGCAATGAGAATTGATGTCC+CGG + chr1_3:54136676-54136695 Msa0125600:CDS 45.0%
GCAATGAGAATTGATGTCCC+GGG + chr1_3:54136677-54136696 Msa0125600:CDS 45.0%
! GCTTTTGTGGAGCTCTATAG+AGG + chr1_3:54136824-54136843 Msa0125600:CDS 45.0%
CTTTGGCAGCTCACTGAATA+TGG + chr1_3:54137086-54137105 Msa0125600:intron 45.0%
CTGTAACCAGACATTGATGC+AGG + chr1_3:54137678-54137697 Msa0125600:intron 45.0%
GTTGATCCTGCATCAATGTC+TGG - chr1_3:54137687-54137706 None:intergenic 45.0%
GTCATATTGCACAGCCCAAT+TGG - chr1_3:54137837-54137856 None:intergenic 45.0%
CTTACTAACTAATGCGTGCC+AGG + chr1_3:54138606-54138625 Msa0125600:intron 45.0%
ATTTGGGCTTTCTTCTCTCG+GGG - chr1_3:54139038-54139057 None:intergenic 45.0%
AAGACACCTGCTTGATCACA+TGG - chr1_3:54139595-54139614 None:intergenic 45.0%
! GGCGAAGTGCTTTGTGAATA+TGG - chr1_3:54140173-54140192 None:intergenic 45.0%
CGCCAACAATGACAGGAAAA+AGG + chr1_3:54140189-54140208 Msa0125600:CDS 45.0%
!! AAGTTGAACTGAGGGTGTTG+TGG - chr1_3:54140372-54140391 None:intergenic 45.0%
GTTAGTGTCGTGTCGAACAT+CGG + chr1_3:54140577-54140596 Msa0125600:intron 45.0%
TGGAGTTTGGACTGACTAAG+CGG + chr1_3:54140671-54140690 Msa0125600:intron 45.0%
TCCTTTGTTACTGTCTCTGC+AGG + chr1_3:54140788-54140807 Msa0125600:intron 45.0%
CCTTTGTTACTGTCTCTGCA+GGG + chr1_3:54140789-54140808 Msa0125600:intron 45.0%
ATCCTGCAGCCCTTAAAAGA+AGG - chr1_3:54141400-54141419 None:intergenic 45.0%
! GGAAGTGCATCAATTTGGCT+AGG - chr1_3:54141428-54141447 None:intergenic 45.0%
GGGCGATAAAAAAGGTCGAA+TGG - chr1_3:54141635-54141654 None:intergenic 45.0%
TGACACGGATGAAACAGTAG+CGG - chr1_3:54141661-54141680 None:intergenic 45.0%
TTCCAGAGTGACAAGTCTCA+GGG - chr1_3:54142047-54142066 None:intergenic 45.0%
!! AGCCATGGATTTCTGGAGTT+AGG - chr1_3:54142436-54142455 None:intergenic 45.0%
!!! ACGTTGTTTTGAGGGTGACA+TGG + chr1_3:54142598-54142617 Msa0125600:CDS 45.0%
!!! CGTTGTTTTGAGGGTGACAT+GGG + chr1_3:54142599-54142618 Msa0125600:CDS 45.0%
!! GAGGGCATTGGAATTTCTAC+AGG + chr1_3:54142706-54142725 Msa0125600:CDS 45.0%
!! TAAAAAAAAATGATAATAAT+TGG - chr1_3:54134703-54134722 None:intergenic 5.0%
!! AGTAAAAAATAAAATAAATA+TGG + chr1_3:54135631-54135650 Msa0125600:intron 5.0%
!!! TAAAATATATTGAATAATTT+TGG - chr1_3:54136340-54136359 None:intergenic 5.0%
!!! AGTTAATTTTAAATAAATAA+TGG + chr1_3:54138399-54138418 Msa0125600:intron 5.0%
!!! GTTAATTTTAAATAAATAAT+GGG + chr1_3:54138400-54138419 Msa0125600:intron 5.0%
!!! TTAATTTTAAATAAATAATG+GGG + chr1_3:54138401-54138420 Msa0125600:intron 5.0%
!!! TTTATTTCTTAAATTAATAT+CGG - chr1_3:54140528-54140547 None:intergenic 5.0%
ACGAATGCCTCCTTCCATTC+TGG - chr1_3:54133849-54133868 None:intergenic 50.0%
CAAAACCATAACCACGCCGA+AGG + chr1_3:54133927-54133946 Msa0125600:CDS 50.0%
CAGATTCAGGTGAGAGCTTG+AGG - chr1_3:54134001-54134020 None:intergenic 50.0%
! CTCGAGTTGCATTTGTTCCC+GGG - chr1_3:54136697-54136716 None:intergenic 50.0%
! GCTCGAGTTGCATTTGTTCC+CGG - chr1_3:54136698-54136717 None:intergenic 50.0%
GTCTCAGGTTCGATTCTCTC+CGG - chr1_3:54137764-54137783 None:intergenic 50.0%
GAATCGAACCTGAGACCTTG+CGG + chr1_3:54137768-54137787 Msa0125600:intron 50.0%
!! GTGGTATTGGCTTGGGTCTT+GGG - chr1_3:54137805-54137824 None:intergenic 50.0%
ATTGCACAGCCCAATTGGGT+TGG - chr1_3:54137832-54137851 None:intergenic 50.0%
! GCATGGTGCTTGTGCTTTTC+TGG + chr1_3:54138678-54138697 Msa0125600:intron 50.0%
CTTTCTTCTCTCGGGGCTAA+GGG - chr1_3:54139031-54139050 None:intergenic 50.0%
AGCACTTCGCCAACAATGAC+AGG + chr1_3:54140182-54140201 Msa0125600:CDS 50.0%
CACGACACTAACACACACGT+AGG - chr1_3:54140569-54140588 None:intergenic 50.0%
GGAGTTTGGACTGACTAAGC+GGG + chr1_3:54140672-54140691 Msa0125600:intron 50.0%
CCCTGCAGAGACAGTAACAA+AGG - chr1_3:54140792-54140811 None:intergenic 50.0%
GACAACAGTGGTTGCAGCAA+TGG + chr1_3:54141367-54141386 Msa0125600:CDS 50.0%
!! CACCTTCTTTTAAGGGCTGC+AGG + chr1_3:54141395-54141414 Msa0125600:CDS 50.0%
GACACGGATGAAACAGTAGC+GGG - chr1_3:54141660-54141679 None:intergenic 50.0%
GGCTGATCAACTAACTAGCC+AGG + chr1_3:54141841-54141860 Msa0125600:CDS 50.0%
CTTCCAGAGTGACAAGTCTC+AGG - chr1_3:54142048-54142067 None:intergenic 50.0%
! GGGAAAGTATGTTTCGGCGA+TGG + chr1_3:54142276-54142295 Msa0125600:CDS 50.0%
GCAGACAAAGTGATCAGCTG+TGG + chr1_3:54142326-54142345 Msa0125600:CDS 50.0%
ACGGAACTGTCTTCACTGCT+CGG - chr1_3:54142883-54142902 None:intergenic 50.0%
AACCATAACCACGCCGAAGG+AGG + chr1_3:54133930-54133949 Msa0125600:CDS 55.0%
! CACACGGTGAAAGCATGGTG+CGG + chr1_3:54134116-54134135 Msa0125600:intron 55.0%
GTGGAGCTCTATAGAGGCCT+TGG + chr1_3:54136830-54136849 Msa0125600:CDS 55.0%
!! GGTGGTATTGGCTTGGGTCT+TGG - chr1_3:54137806-54137825 None:intergenic 55.0%
AGACCCAAGCCAATACCACC+AGG + chr1_3:54137806-54137825 Msa0125600:intron 55.0%
!! TGGCCTGGTGGTATTGGCTT+GGG - chr1_3:54137812-54137831 None:intergenic 55.0%
!! TTGGCCTGGTGGTATTGGCT+TGG - chr1_3:54137813-54137832 None:intergenic 55.0%
!! TTGGGTTGGCCTGGTGGTAT+TGG - chr1_3:54137818-54137837 None:intergenic 55.0%
TACCACCAGGCCAACCCAAT+TGG + chr1_3:54137819-54137838 Msa0125600:intron 55.0%
ACCACCAGGCCAACCCAATT+GGG + chr1_3:54137820-54137839 Msa0125600:intron 55.0%
GCTTTCTTCTCTCGGGGCTA+AGG - chr1_3:54139032-54139051 None:intergenic 55.0%
GTCTCTGCAGGGTTGTCTAC+AGG + chr1_3:54140800-54140819 Msa0125600:intron 55.0%
AGCGGGTCGGGCGATAAAAA+AGG - chr1_3:54141643-54141662 None:intergenic 55.0%
!! GGATGAAACAGTAGCGGGTC+GGG - chr1_3:54141655-54141674 None:intergenic 55.0%
!! CGGATGAAACAGTAGCGGGT+CGG - chr1_3:54141656-54141675 None:intergenic 55.0%
CAGAGTGACAAGTCTCAGGG+TGG - chr1_3:54142044-54142063 None:intergenic 55.0%
CACCCTGAGACTTGTCACTC+TGG + chr1_3:54142042-54142061 Msa0125600:CDS 55.0%
GTTACAAGTGTGCGAGACGG+TGG + chr1_3:54142218-54142237 Msa0125600:intron 55.0%
GCTGTATGTTACTCTCGCCC+CGG - chr1_3:54142308-54142327 None:intergenic 55.0%
CTCCTCCTTCGGCGTGGTTA+TGG - chr1_3:54133935-54133954 None:intergenic 60.0%
CATAACCACGCCGAAGGAGG+AGG + chr1_3:54133933-54133952 Msa0125600:CDS 60.0%
CTTTCCCGCGTTCTCCAGCA+CGG + chr1_3:54136122-54136141 Msa0125600:CDS 60.0%
TTTCCCGCGTTCTCCAGCAC+GGG + chr1_3:54136123-54136142 Msa0125600:CDS 60.0%
AATCCCGTGCTGGAGAACGC+GGG - chr1_3:54136129-54136148 None:intergenic 60.0%
GAATCCCGTGCTGGAGAACG+CGG - chr1_3:54136130-54136149 None:intergenic 60.0%
TCGAACCTGAGACCTTGCGG+AGG + chr1_3:54137771-54137790 Msa0125600:intron 60.0%
!! ACAGCCCAATTGGGTTGGCC+TGG - chr1_3:54137827-54137846 None:intergenic 60.0%
GTTTCGGCGATGGTAGCAGC+CGG + chr1_3:54142286-54142305 Msa0125600:CDS 60.0%
TTTCGGCGATGGTAGCAGCC+GGG + chr1_3:54142287-54142306 Msa0125600:CDS 60.0%
TGGAACCTCCTCCTTCGGCG+TGG - chr1_3:54133941-54133960 None:intergenic 65.0%
GTGCTCCTCCGCAAGGTCTC+AGG - chr1_3:54137779-54137798 None:intergenic 65.0%
! TGGGAGTGTGCTCCTCCGCA+AGG - chr1_3:54137786-54137805 None:intergenic 65.0%
!! GCCCAATTGGGTTGGCCTGG+TGG - chr1_3:54137824-54137843 None:intergenic 65.0%
TTCGGCGATGGTAGCAGCCG+GGG + chr1_3:54142288-54142307 Msa0125600:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 54133732 54143131 54133732 ID=Msa0125600;Name=Msa0125600
chr1_3 mRNA 54133732 54143131 54133732 ID=Msa0125600-mRNA-1;Parent=Msa0125600;Name=Msa0125600-mRNA-1;_AED=0.13;_eAED=0.13;_QI=75|1|1|1|1|1|15|197|772
chr1_3 exon 54133732 54134046 54133732 ID=Msa0125600-mRNA-1:exon:16663;Parent=Msa0125600-mRNA-1
chr1_3 exon 54135743 54135823 54135743 ID=Msa0125600-mRNA-1:exon:16664;Parent=Msa0125600-mRNA-1
chr1_3 exon 54135929 54136163 54135929 ID=Msa0125600-mRNA-1:exon:16665;Parent=Msa0125600-mRNA-1
chr1_3 exon 54136540 54136870 54136540 ID=Msa0125600-mRNA-1:exon:16666;Parent=Msa0125600-mRNA-1
chr1_3 exon 54137095 54137143 54137095 ID=Msa0125600-mRNA-1:exon:16667;Parent=Msa0125600-mRNA-1
chr1_3 exon 54139608 54139679 54139608 ID=Msa0125600-mRNA-1:exon:16668;Parent=Msa0125600-mRNA-1
chr1_3 exon 54140142 54140271 54140142 ID=Msa0125600-mRNA-1:exon:16669;Parent=Msa0125600-mRNA-1
chr1_3 exon 54140810 54140930 54140810 ID=Msa0125600-mRNA-1:exon:16670;Parent=Msa0125600-mRNA-1
chr1_3 exon 54141214 54141463 54141214 ID=Msa0125600-mRNA-1:exon:16671;Parent=Msa0125600-mRNA-1
chr1_3 exon 54141608 54141712 54141608 ID=Msa0125600-mRNA-1:exon:16672;Parent=Msa0125600-mRNA-1
chr1_3 exon 54141818 54141862 54141818 ID=Msa0125600-mRNA-1:exon:16673;Parent=Msa0125600-mRNA-1
chr1_3 exon 54141976 54142128 54141976 ID=Msa0125600-mRNA-1:exon:16674;Parent=Msa0125600-mRNA-1
chr1_3 exon 54142226 54142504 54142226 ID=Msa0125600-mRNA-1:exon:16675;Parent=Msa0125600-mRNA-1
chr1_3 exon 54142591 54142727 54142591 ID=Msa0125600-mRNA-1:exon:16676;Parent=Msa0125600-mRNA-1
chr1_3 exon 54142844 54143131 54142844 ID=Msa0125600-mRNA-1:exon:16677;Parent=Msa0125600-mRNA-1
chr1_3 five_prime_UTR 54133732 54133806 54133732 ID=Msa0125600-mRNA-1:five_prime_utr;Parent=Msa0125600-mRNA-1
chr1_3 CDS 54133807 54134046 54133807 ID=Msa0125600-mRNA-1:cds;Parent=Msa0125600-mRNA-1
chr1_3 CDS 54135743 54135823 54135743 ID=Msa0125600-mRNA-1:cds;Parent=Msa0125600-mRNA-1
chr1_3 CDS 54135929 54136163 54135929 ID=Msa0125600-mRNA-1:cds;Parent=Msa0125600-mRNA-1
chr1_3 CDS 54136540 54136870 54136540 ID=Msa0125600-mRNA-1:cds;Parent=Msa0125600-mRNA-1
chr1_3 CDS 54137095 54137143 54137095 ID=Msa0125600-mRNA-1:cds;Parent=Msa0125600-mRNA-1
chr1_3 CDS 54139608 54139679 54139608 ID=Msa0125600-mRNA-1:cds;Parent=Msa0125600-mRNA-1
chr1_3 CDS 54140142 54140271 54140142 ID=Msa0125600-mRNA-1:cds;Parent=Msa0125600-mRNA-1
chr1_3 CDS 54140810 54140930 54140810 ID=Msa0125600-mRNA-1:cds;Parent=Msa0125600-mRNA-1
chr1_3 CDS 54141214 54141463 54141214 ID=Msa0125600-mRNA-1:cds;Parent=Msa0125600-mRNA-1
chr1_3 CDS 54141608 54141712 54141608 ID=Msa0125600-mRNA-1:cds;Parent=Msa0125600-mRNA-1
chr1_3 CDS 54141818 54141862 54141818 ID=Msa0125600-mRNA-1:cds;Parent=Msa0125600-mRNA-1
chr1_3 CDS 54141976 54142128 54141976 ID=Msa0125600-mRNA-1:cds;Parent=Msa0125600-mRNA-1
chr1_3 CDS 54142226 54142504 54142226 ID=Msa0125600-mRNA-1:cds;Parent=Msa0125600-mRNA-1
chr1_3 CDS 54142591 54142727 54142591 ID=Msa0125600-mRNA-1:cds;Parent=Msa0125600-mRNA-1
chr1_3 CDS 54142844 54142934 54142844 ID=Msa0125600-mRNA-1:cds;Parent=Msa0125600-mRNA-1
chr1_3 three_prime_UTR 54142935 54143131 54142935 ID=Msa0125600-mRNA-1:three_prime_utr;Parent=Msa0125600-mRNA-1
Gene Sequence

>Msa0125600

ATGGTGAAATTCTCAAAGGAGCTAGAAGCTCAACTCATACCAGAATGGAAGGAGGCATTCGTGAACTATTGGCAGCTGAAGAAGCAGATAAAGAGAATCAAGCTCTCAAAAATTCCAAAGCAAAACCATAACCACGCCGAAGGAGGAGGTTCCATTTTCAATTCTCTTTGCTTTCTTGTCAAGAAAATCTCCCTCAAGCTCTCACCTGAATCTGATCATGATAACATAAATATCATTAAGGTGAGGAAGAAAACCATAAAAGGCAGTGGAGAAGAAATATACCAAACAGAGCTTGTACAATTATTTTCGGAAGAGGATGAGGTCCGTGTGTTTTTTGGGATGCTTGATGATGAGCTAAACAAGGTGAACCAGTTTTACATTAAACAAGAGAATGAATTCATTGGGAGAGGAGAAGCTTTGAACAAACAGCTTCAGATTTTGCAAGACCTAAAGCAAATTATAAATGATAGACGACGGAAAAAATATCCGCCAACAAAGGCAAATAATACAGAGACTTTCCCGCGTTCTCCAGCACGGGATTCTGATTATTCATTAGAATGTTTAGGAGATTCGGACGAAACAAATTCAGAAATTTCACATACAGAAGAGGTAATAGCAAGCTTAGAGAAAAATGGTGTAAATTTTGTGAATTCAGCAATGAGGACAAAAACAAAGAAAGGAAAGCCTAGAATGGCAATGAGAATTGATGTCCCGGGAACAAATGCAACTCGAGCAATTACAGCTATTACTAGCATGCTTTGGGAGGATTTAGTGAACAATCCAACAGGAGATTTCATTCACAAGAAAAAAATTCAATGTGCTGAAAAAATGATTAGAAGTGCTTTTGTGGAGCTCTATAGAGGCCTTGGCTTGCTCAAAACTTATAGCTCACTGAATATGGTAGCATTTTCCAAGATATTGAAGAAATTTGACAAGGTGTCTTGCCAAAAAGCTTCTTCAAGTTATTTAAAAGAAGTGAAGAAATCCCATTTCGTTAGTTCTGATAAGGTTCTTAGACTAATGGACGAAGTGGAATCCATATTCACAAAGCACTTCGCCAACAATGACAGGAAAAAGGCAATGAAGTTTTTAAGACCCCAACAACATAAAGATTCTCATATGGTCACTTTTCTTGTCGGGTTGTCTACAGGTTGTTTTGTGTCATTGTTTTGTGTATACGCAATATTGGCTCATTTGTGTGCTATATTCTCTCCTAGCAATGAGTCAGCTTATATGCAAAATGTCTATCCTGTTTTCAGTGTGTTTGCATTGCTAAGCCTGCACTTATTTATGTATGGATGTAATCTATATATGTGGAAGAGAACAAGAATCAATTACAACTTCATTTTTGAATTCTCCCCAAGGACATCACTTAAGCATAGAGATGCATTTTTGATATGCACTACCTTAATGACAACAGTGGTTGCAGCAATGGTTATGCACCTTCTTTTAAGGGCTGCAGGATTTTCTCCTAGCCAAATTGATGCACTTCCTGCAATATTACTTCTGTCTTTTATAGCTCTGCTCATTTGTCCATTCGACCTTTTTTATCGCCCGACCCGCTACTGTTTCATCCGTGTCATTCGCAACATAATCTGCTCACCATTTTATAAGGTTCTGCTAGTAGACTTTTTTATGGCTGATCAACTAACTAGCCAGATTCCATTGCTAAGGCATTTGGAAACTACTAGTTGTAACCTATTGGCTAAAGTTTTCAAAACTCACCACCCTGAGACTTGTCACTCTGGAAGACTGTATATGGAAATAACTTATATCATATCCTTTATGCCATATTATTGGCGTGCTATGCAATGTGCGAGACGGTGGTTTGATGACAGTGATGTGAACCATTTAGCTAACATGGGAAAGTATGTTTCGGCGATGGTAGCAGCCGGGGCGAGAGTAACATACAGCAGACAAAGTGATCAGCTGTGGTTCGCAATAGTCTTAATCACTTCTGTAGTGGCAACCACTTATCAACTCTATTGGGATTTTATCAAGGATTGGGGTTTTTTAAATCCTAACTCCAGAAATCCATGGCTTAGAGATGACTTAGTTCTTAAGAAAAAAAGCATATACTATTTGTCTATTGCCTTAAACGTTGTTTTGAGGGTGACATGGGTTGAGACTATCATGCATTTCAAAGTCGGACATGTTCAATCGCGACTGCTAGAATTTTTGTTGGCTGCACTTGAAGTTATTCGAAGAGGGCATTGGAATTTCTACAGGTTGGAAAATGAGCATCTAAATAATGTCGGTCATTACCGAGCAGTGAAGACAGTTCCGTTACCATTTCGAGAGACAGATTCTGACTATTAA
Protein sequence

>Msa0125600

MVKFSKELEAQLIPEWKEAFVNYWQLKKQIKRIKLSKIPKQNHNHAEGGGSIFNSLCFLVKKISLKLSPESDHDNINIIKVRKKTIKGSGEEIYQTELVQLFSEEDEVRVFFGMLDDELNKVNQFYIKQENEFIGRGEALNKQLQILQDLKQIINDRRRKKYPPTKANNTETFPRSPARDSDYSLECLGDSDETNSEISHTEEVIASLEKNGVNFVNSAMRTKTKKGKPRMAMRIDVPGTNATRAITAITSMLWEDLVNNPTGDFIHKKKIQCAEKMIRSAFVELYRGLGLLKTYSSLNMVAFSKILKKFDKVSCQKASSSYLKEVKKSHFVSSDKVLRLMDEVESIFTKHFANNDRKKAMKFLRPQQHKDSHMVTFLVGLSTGCFVSLFCVYAILAHLCAIFSPSNESAYMQNVYPVFSVFALLSLHLFMYGCNLYMWKRTRINYNFIFEFSPRTSLKHRDAFLICTTLMTTVVAAMVMHLLLRAAGFSPSQIDALPAILLLSFIALLICPFDLFYRPTRYCFIRVIRNIICSPFYKVLLVDFFMADQLTSQIPLLRHLETTSCNLLAKVFKTHHPETCHSGRLYMEITYIISFMPYYWRAMQCARRWFDDSDVNHLANMGKYVSAMVAAGARVTYSRQSDQLWFAIVLITSVVATTYQLYWDFIKDWGFLNPNSRNPWLRDDLVLKKKSIYYLSIALNVVLRVTWVETIMHFKVGHVQSRLLEFLLAALEVIRRGHWNFYRLENEHLNNVGHYRAVKTVPLPFRETDSDY*