AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0817100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0817100 MtrunA17_Chr5g0404721 96.979 331 10 0 1 331 1 331 0.0 662
Msa0817100 MtrunA17_Chr8g0372601 83.861 316 51 0 15 330 15 330 0.0 561
Msa0817100 MtrunA17_Chr1g0155611 61.589 302 115 1 30 330 46 347 4.85e-131 377
Msa0817100 MtrunA17_Chr7g0258811 50.000 326 157 3 7 330 50 371 8.53e-113 332
Msa0817100 MtrunA17_Chr5g0400331 53.746 307 135 3 30 330 26 331 1.39e-112 330
Msa0817100 MtrunA17_Chr2g0320031 50.155 323 147 2 8 330 11 319 3.13e-112 328
Msa0817100 MtrunA17_Chr4g0013171 53.067 326 140 5 7 330 7 321 4.90e-112 328
Msa0817100 MtrunA17_Chr5g0438021 49.847 327 150 4 6 330 11 325 7.12e-112 328
Msa0817100 MtrunA17_Chr2g0320061 50.155 323 146 2 8 330 11 318 2.45e-111 326
Msa0817100 MtrunA17_Chr3g0114451 53.086 324 142 3 7 330 5 318 3.84e-111 325
Msa0817100 MtrunA17_Chr2g0320071 49.383 324 154 3 7 330 4 317 1.20e-110 324
Msa0817100 MtrunA17_Chr2g0320051 51.148 305 142 1 26 330 21 318 1.84e-110 324
Msa0817100 MtrunA17_Chr2g0292251 52.131 305 145 1 27 330 25 329 2.54e-110 325
Msa0817100 MtrunA17_Chr2g0292111 52.131 305 145 1 27 330 26 330 2.79e-109 322
Msa0817100 MtrunA17_Chr2g0292181 51.148 305 148 1 27 330 35 339 7.10e-109 321
Msa0817100 MtrunA17_Chr2g0292241 51.307 306 148 1 27 331 26 331 2.13e-108 320
Msa0817100 MtrunA17_Chr1g0175561 47.590 332 165 3 1 330 2 326 1.78e-107 317
Msa0817100 MtrunA17_Chr2g0291751 50.000 314 151 2 18 330 22 330 2.19e-107 317
Msa0817100 MtrunA17_Chr2g0292091 50.654 306 148 2 28 330 20 325 3.50e-107 317
Msa0817100 MtrunA17_Chr3g0106921 50.987 304 138 4 30 330 25 320 9.80e-107 314
Msa0817100 MtrunA17_Chr2g0320101 49.074 324 155 3 7 330 4 317 1.42e-106 314
Msa0817100 MtrunA17_Chr2g0299691 52.459 305 139 2 30 330 56 358 2.40e-106 315
Msa0817100 MtrunA17_Chr3g0129051 48.000 325 156 4 8 330 9 322 5.37e-106 313
Msa0817100 MtrunA17_Chr2g0292101 50.327 306 149 2 28 330 21 326 5.75e-106 313
Msa0817100 MtrunA17_Chr2g0292211 50.492 305 150 1 27 330 37 341 5.79e-106 314
Msa0817100 MtrunA17_Chr2g0292151 50.164 305 151 1 27 330 26 330 1.06e-105 313
Msa0817100 MtrunA17_Chr4g0013181 54.181 299 127 4 34 330 63 353 3.35e-105 311
Msa0817100 MtrunA17_Chr2g0320091 48.607 323 154 5 9 330 7 318 1.01e-104 309
Msa0817100 MtrunA17_Chr7g0244461 49.508 305 146 2 26 330 16 312 2.10e-104 308
Msa0817100 MtrunA17_Chr5g0432441 50.606 330 143 6 8 330 10 326 2.23e-104 308
Msa0817100 MtrunA17_Chr4g0043391 46.246 333 164 3 1 330 4 324 2.77e-104 308
Msa0817100 MtrunA17_Chr4g0068621 50.331 302 146 2 30 330 38 336 5.69e-104 308
Msa0817100 MtrunA17_Chr4g0070951 49.249 333 162 3 1 330 1 329 7.07e-104 307
Msa0817100 MtrunA17_Chr5g0402571 50.154 325 153 4 7 330 10 326 3.01e-103 306
Msa0817100 MtrunA17_Chr3g0129061 48.923 325 148 4 8 330 14 322 3.28e-103 305
Msa0817100 MtrunA17_Chr4g0038171 45.646 333 166 3 1 330 1 321 1.12e-102 304
Msa0817100 MtrunA17_Chr5g0432351 51.803 305 135 5 30 330 25 321 3.64e-102 303
Msa0817100 MtrunA17_Chr4g0038161 47.077 325 156 4 9 330 9 320 1.19e-101 301
Msa0817100 MtrunA17_Chr2g0292271 46.749 323 165 2 9 330 14 330 1.25e-101 303
Msa0817100 MtrunA17_Chr4g0038151 48.208 307 149 3 27 330 22 321 1.72e-101 301
Msa0817100 MtrunA17_Chr3g0129041 49.074 324 148 4 9 330 14 322 2.75e-101 300
Msa0817100 MtrunA17_Chr5g0432341 51.475 305 136 5 30 330 25 321 8.83e-101 299
Msa0817100 MtrunA17_Chr7g0224371 50.498 301 132 4 34 330 35 322 1.52e-100 299
Msa0817100 MtrunA17_Chr5g0402581 48.923 325 157 4 7 330 10 326 3.51e-100 298
Msa0817100 MtrunA17_Chr7g0244451 46.547 333 153 4 2 330 5 316 1.28e-99 296
Msa0817100 MtrunA17_Chr2g0292261 49.329 298 150 1 34 330 33 330 2.14e-98 294
Msa0817100 MtrunA17_Chr4g0013191 49.508 305 141 5 30 330 45 340 2.23e-98 294
Msa0817100 MtrunA17_Chr5g0432331 50.492 305 139 5 30 330 56 352 3.89e-98 294
Msa0817100 MtrunA17_Chr2g0292291 46.319 326 166 3 14 330 7 332 2.44e-97 291
Msa0817100 MtrunA17_Chr3g0106901 47.840 324 152 3 7 330 17 323 7.45e-97 289
Msa0817100 MtrunA17_Chr4g0013201 47.682 302 148 3 30 330 46 338 8.27e-96 287
Msa0817100 MtrunA17_Chr4g0013721 48.013 302 153 3 30 331 100 397 7.97e-95 287
Msa0817100 MtrunA17_Chr5g0421411 47.872 282 143 3 53 330 4 285 1.50e-93 280
Msa0817100 MtrunA17_Chr4g0013821 46.179 301 158 3 30 330 28 324 5.52e-93 280
Msa0817100 MtrunA17_Chr3g0107881 44.753 324 166 5 11 330 10 324 8.29e-93 279
Msa0817100 MtrunA17_Chr2g0322861 45.946 333 169 6 1 331 64 387 9.06e-93 281
Msa0817100 MtrunA17_Chr1g0213061 44.582 323 167 4 10 330 9 321 1.05e-91 276
Msa0817100 MtrunA17_Chr4g0024121 47.351 302 156 3 30 330 27 326 3.67e-89 270
Msa0817100 MtrunA17_Chr2g0279041 45.946 333 158 7 7 330 6 325 2.56e-87 265
Msa0817100 MtrunA17_Chr3g0128061 47.157 299 156 2 34 331 30 327 7.80e-87 264
Msa0817100 MtrunA17_Chr7g0268501 44.479 326 173 5 5 330 3 320 8.02e-86 261
Msa0817100 MtrunA17_Chr7g0268521 44.479 326 173 5 5 330 3 320 8.02e-86 261
Msa0817100 MtrunA17_Chr4g0076211 44.781 297 154 5 35 330 46 333 1.39e-82 253
Msa0817100 MtrunA17_Chr1g0194151 46.179 301 157 3 34 330 34 333 2.43e-82 253
Msa0817100 MtrunA17_Chr5g0405991 42.727 330 172 6 1 330 4 316 3.45e-82 251
Msa0817100 MtrunA17_Chr1g0164891 45.515 301 159 5 34 330 93 392 7.70e-81 251
Msa0817100 MtrunA17_Chr2g0296621 45.098 306 157 7 26 330 46 341 1.81e-80 248
Msa0817100 MtrunA17_Chr1g0204011 41.846 325 176 7 7 330 10 322 2.34e-80 247
Msa0817100 MtrunA17_Chr8g0371381 44.147 299 156 6 34 330 30 319 3.33e-80 247
Msa0817100 MtrunA17_Chr1g0194271 44.805 308 158 4 34 330 34 340 1.54e-79 246
Msa0817100 MtrunA17_Chr4g0063671 41.791 335 175 7 1 330 1 320 6.97e-79 243
Msa0817100 MtrunA17_Chr7g0254231 41.447 304 167 5 28 331 20 312 2.87e-77 239
Msa0817100 MtrunA17_Chr6g0460711 42.761 297 163 5 34 330 25 314 4.92e-77 238
Msa0817100 MtrunA17_Chr6g0477071 39.394 330 185 7 1 330 28 342 2.93e-76 237
Msa0817100 MtrunA17_Chr5g0432401 41.694 307 128 5 27 329 26 285 3.44e-75 233
Msa0817100 MtrunA17_Chr1g0188431 39.938 323 182 6 8 330 17 327 5.52e-75 234
Msa0817100 MtrunA17_Chr1g0181511 42.193 301 162 5 34 330 31 323 5.85e-75 233
Msa0817100 MtrunA17_Chr8g0364291 40.741 324 185 4 10 331 7 325 3.13e-74 232
Msa0817100 MtrunA17_Chr1g0157051 40.491 326 182 6 1 326 1 314 8.79e-74 230
Msa0817100 MtrunA17_Chr7g0254201 42.088 297 164 6 34 330 24 312 1.57e-73 229
Msa0817100 MtrunA17_Chr7g0225221 42.053 302 168 4 30 330 25 320 1.01e-71 225
Msa0817100 MtrunA17_Chr4g0046131 38.806 335 189 6 7 326 9 342 5.68e-71 224
Msa0817100 MtrunA17_Chr5g0401431 39.264 326 191 5 8 329 6 328 7.31e-71 223
Msa0817100 MtrunA17_Chr1g0181431 40.667 300 168 4 34 330 31 323 1.97e-70 222
Msa0817100 MtrunA17_Chr1g0148021 40.122 329 187 5 5 330 7 328 6.75e-70 221
Msa0817100 MtrunA17_Chr4g0075241 38.926 298 178 3 34 330 33 327 1.49e-69 219
Msa0817100 MtrunA17_Chr6g0467121 37.647 340 185 9 2 330 40 363 3.16e-69 221
Msa0817100 MtrunA17_Chr1g0181481 40.333 300 169 4 34 330 31 323 1.46e-68 217
Msa0817100 MtrunA17_Chr2g0278671 42.532 308 162 9 30 330 24 323 3.87e-68 216
Msa0817100 MtrunA17_Chr6g0467161 36.254 331 191 6 8 330 18 336 4.37e-68 216
Msa0817100 MtrunA17_Chr6g0467251 39.394 330 185 7 5 331 12 329 9.53e-68 216
Msa0817100 MtrunA17_Chr4g0072091 39.203 301 174 4 34 330 28 323 1.40e-67 214
Msa0817100 MtrunA17_Chr2g0316481 36.812 345 183 7 18 329 63 405 2.74e-67 216
Msa0817100 MtrunA17_Chr2g0316791 37.176 347 179 8 18 329 63 405 3.05e-67 216
Msa0817100 MtrunA17_Chr2g0279061 47.126 261 128 5 74 330 12 266 4.69e-67 211
Msa0817100 MtrunA17_Chr3g0136751 41.667 300 166 4 34 330 29 322 7.97e-67 213
Msa0817100 MtrunA17_Chr1g0197411 36.170 329 202 5 5 330 7 330 1.04e-66 213
Msa0817100 MtrunA17_Chr2g0316831 37.101 345 182 8 18 329 99 441 2.20e-66 215
Msa0817100 MtrunA17_Chr4g0053871 39.815 324 184 6 6 326 5 320 8.29e-66 210
Msa0817100 MtrunA17_Chr2g0329641 37.092 337 193 9 5 330 7 335 2.12e-65 209
Msa0817100 MtrunA17_Chr2g0316191 35.549 346 187 7 18 329 63 406 6.89e-65 210
Msa0817100 MtrunA17_Chr4g0074851 36.308 325 194 5 8 326 7 324 2.10e-63 204
Msa0817100 MtrunA17_Chr6g0451571 35.168 327 200 6 7 330 17 334 3.43e-63 203
Msa0817100 MtrunA17_Chr3g0114461 51.282 195 88 1 136 330 5 192 1.03e-59 190
Msa0817100 MtrunA17_Chr2g0311251 35.671 328 176 7 34 329 15 339 2.01e-59 194
Msa0817100 MtrunA17_Chr2g0311241 32.902 386 182 8 18 329 47 429 3.70e-59 196
Msa0817100 MtrunA17_Chr5g0413051 36.246 309 189 5 28 330 71 377 2.81e-58 192
Msa0817100 MtrunA17_Chr2g0292281 45.238 210 102 3 123 330 18 216 3.63e-51 169
Msa0817100 MtrunA17_Chr2g0316811 38.655 238 127 4 18 237 37 273 2.36e-47 162
Msa0817100 MtrunA17_Chr3g0114491 60.550 109 43 0 30 138 18 126 7.20e-41 139
Msa0817100 MtrunA17_Chr4g0004591 29.747 316 161 4 34 329 81 355 1.28e-40 145
Msa0817100 MtrunA17_Chr2g0316141 31.142 289 146 8 76 331 11 279 3.51e-37 134
Msa0817100 MtrunA17_Chr2g0316181 31.142 289 146 8 76 331 11 279 3.51e-37 134
Msa0817100 MtrunA17_Chr1g0181501 35.751 193 114 4 141 330 4 189 7.06e-33 120
Msa0817100 MtrunA17_Chr5g0432321 48.387 124 56 2 151 274 17 132 4.43e-29 108
Msa0817100 MtrunA17_Chr3g0104101 41.135 141 79 3 194 330 9 149 7.09e-26 100
Msa0817100 MtrunA17_Chr1g0181491 43.925 107 58 2 34 140 16 120 4.41e-22 90.9
Msa0817100 MtrunA17_Chr6g0468731 61.972 71 23 2 69 139 22 88 2.13e-21 87.0
Msa0817100 MtrunA17_Chr4g0013811 53.333 75 35 0 140 214 5 79 1.16e-19 82.0
Msa0817100 MtrunA17_Chr7g0254181 40.541 111 58 2 91 196 15 122 1.33e-18 81.6
Msa0817100 MtrunA17_Chr5g0432361 42.056 107 55 3 224 329 8 108 7.69e-18 78.2
Msa0817100 MtrunA17_Chr3g0137751 28.517 263 121 8 61 311 105 312 1.43e-17 82.0
Msa0817100 MtrunA17_Chr7g0254171 50.000 74 36 1 75 148 3 75 9.11e-17 75.9
Msa0817100 MtrunA17_Chr7g0268491 50.667 75 35 2 256 330 25 97 7.16e-16 72.4
Msa0817100 MtrunA17_Chr1g0196191 52.308 65 30 1 72 136 27 90 4.64e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0817100 AT5G66390.1 74.551 334 82 2 1 331 1 334 0.0 529
Msa0817100 AT4G36430.1 70.126 318 95 0 14 331 14 331 6.85e-171 478
Msa0817100 AT2G18150.1 67.976 331 100 1 7 331 7 337 7.44e-170 476
Msa0817100 AT2G18140.1 64.048 331 114 1 6 331 6 336 1.29e-157 444
Msa0817100 AT3G50990.1 63.804 326 113 1 11 331 17 342 1.01e-152 432
Msa0817100 AT1G44970.1 65.232 302 104 1 30 330 45 346 5.57e-140 400
Msa0817100 AT2G35380.1 53.571 308 134 3 30 330 30 335 5.28e-110 323
Msa0817100 AT5G06720.1 50.331 302 149 1 30 330 32 333 5.74e-109 321
Msa0817100 AT5G05340.1 48.860 307 147 3 26 330 26 324 8.45e-106 312
Msa0817100 AT4G08770.1 49.836 305 150 2 30 331 24 328 7.80e-105 311
Msa0817100 AT5G19890.1 50.932 322 149 4 13 331 13 328 1.25e-104 310
Msa0817100 AT4G08780.1 50.327 306 147 3 30 331 24 328 1.50e-104 310
Msa0817100 AT1G14550.1 47.840 324 156 3 8 330 10 321 1.76e-104 309
Msa0817100 AT1G49570.1 53.872 297 133 3 33 326 51 346 8.18e-104 308
Msa0817100 AT3G49110.1 48.562 313 158 2 22 331 25 337 1.91e-102 305
Msa0817100 AT3G32980.1 49.180 305 152 2 30 331 31 335 3.37e-102 304
Msa0817100 AT5G06730.1 47.020 302 159 1 30 330 33 334 4.97e-102 304
Msa0817100 AT5G58400.1 45.566 327 161 5 7 330 13 325 5.75e-101 300
Msa0817100 AT2G38390.1 47.386 306 159 2 27 330 28 333 9.12e-101 300
Msa0817100 AT4G16270.1 51.342 298 141 3 34 330 54 348 1.64e-100 300
Msa0817100 AT3G49120.1 48.852 305 153 2 30 331 32 336 4.86e-99 296
Msa0817100 AT2G38380.1 47.525 303 157 2 30 330 31 333 1.23e-96 290
Msa0817100 AT2G22420.1 47.841 301 153 3 30 330 23 319 2.04e-95 286
Msa0817100 AT5G58390.1 45.897 329 161 5 5 330 2 316 1.01e-94 284
Msa0817100 AT1G14540.1 43.827 324 167 2 7 330 7 315 1.66e-94 283
Msa0817100 AT1G68850.1 46.358 302 157 3 34 330 34 335 2.76e-94 283
Msa0817100 AT3G03670.1 43.519 324 175 3 7 330 6 321 1.47e-89 271
Msa0817100 AT5G19880.1 41.590 327 181 4 8 330 9 329 4.40e-86 262
Msa0817100 AT1G05260.1 42.857 329 183 4 5 331 1 326 6.46e-86 262
Msa0817100 AT4G11290.1 45.485 299 160 3 34 330 29 326 2.13e-85 261
Msa0817100 AT5G15180.1 45.791 297 158 3 34 330 36 329 1.38e-84 258
Msa0817100 AT5G64120.1 43.434 297 161 5 34 330 39 328 7.21e-84 257
Msa0817100 AT3G21770.1 44.737 304 159 4 27 326 26 324 3.84e-82 252
Msa0817100 AT5G17820.1 40.303 330 180 6 1 330 1 313 4.28e-81 249
Msa0817100 AT1G71695.1 42.183 339 174 9 5 330 10 339 1.18e-80 249
Msa0817100 AT5G17820.2 40.303 330 180 6 1 330 54 366 4.31e-80 248
Msa0817100 AT5G42180.1 44.333 300 161 4 30 329 23 316 2.64e-79 244
Msa0817100 AT2G35380.2 50.201 249 115 3 89 330 1 247 3.61e-79 242
Msa0817100 AT2G39040.1 44.127 315 166 6 23 330 39 350 1.31e-78 244
Msa0817100 AT1G05240.1 43.434 297 159 5 34 326 30 321 1.32e-78 243
Msa0817100 AT1G05250.1 43.434 297 159 5 34 326 30 321 1.32e-78 243
Msa0817100 AT3G01190.1 43.925 321 169 5 10 330 12 321 1.86e-78 243
Msa0817100 AT2G41480.1 44.040 302 158 5 34 330 33 328 3.22e-78 242
Msa0817100 AT5G51890.1 40.244 328 178 8 7 330 9 322 8.94e-77 238
Msa0817100 AT5G39580.1 43.624 298 160 6 34 330 29 319 1.43e-76 238
Msa0817100 AT1G30870.1 44.984 309 158 6 26 331 47 346 7.50e-76 237
Msa0817100 AT5G64100.1 44.482 299 156 5 34 330 41 331 1.44e-74 233
Msa0817100 AT4G26010.1 41.195 318 172 7 15 331 7 310 3.97e-72 226
Msa0817100 AT5G47000.1 38.226 327 192 5 7 331 13 331 5.74e-72 226
Msa0817100 AT4G26010.2 41.195 318 172 7 15 331 35 338 6.96e-72 226
Msa0817100 AT4G33870.1 36.716 335 175 4 29 328 67 399 1.48e-71 228
Msa0817100 AT2G37130.1 40.584 308 172 5 27 330 27 327 9.28e-71 223
Msa0817100 AT5G64110.1 43.000 300 161 5 34 330 38 330 9.61e-71 223
Msa0817100 AT2G37130.2 40.864 301 167 5 34 330 3 296 1.26e-70 222
Msa0817100 AT4G37520.1 39.145 304 181 3 30 330 27 329 3.48e-70 222
Msa0817100 AT4G33420.1 39.818 329 180 8 2 330 15 325 1.06e-69 220
Msa0817100 AT4G37530.1 39.474 304 180 3 30 330 27 329 1.91e-69 220
Msa0817100 AT4G33420.2 39.818 329 180 8 2 330 62 372 4.81e-69 220
Msa0817100 AT2G18980.1 38.138 333 193 5 1 330 1 323 5.92e-69 218
Msa0817100 AT5G14130.1 37.654 324 189 5 8 330 19 330 6.38e-69 218
Msa0817100 AT3G28200.1 39.604 303 174 4 30 330 21 316 8.18e-69 218
Msa0817100 AT4G37520.2 38.816 304 179 4 30 330 27 326 1.40e-68 218
Msa0817100 AT1G24110.1 39.344 305 179 5 30 331 22 323 2.21e-68 217
Msa0817100 AT5G14130.2 37.654 324 189 5 8 330 60 371 2.35e-68 218
Msa0817100 AT1G77100.1 40.594 303 163 8 34 330 28 319 6.93e-68 215
Msa0817100 AT2G24800.1 41.667 300 167 5 34 330 35 329 1.19e-67 215
Msa0817100 AT4G30170.1 38.387 310 179 6 26 330 23 325 1.51e-67 215
Msa0817100 AT4G31760.1 40.134 299 172 4 34 330 33 326 2.90e-67 214
Msa0817100 AT4G25980.1 38.411 302 176 5 34 330 30 326 8.00e-67 213
Msa0817100 AT1G34510.1 39.432 317 177 7 16 331 8 310 2.76e-66 211
Msa0817100 AT5G40150.1 38.111 307 182 4 26 330 28 328 5.29e-66 211
Msa0817100 AT2G34060.1 37.462 331 196 6 7 327 14 343 6.18e-66 211
Msa0817100 AT4G17690.1 38.284 303 179 4 30 330 26 322 6.53e-66 211
Msa0817100 AT4G21960.1 38.816 304 176 4 30 330 31 327 1.00e-64 207
Msa0817100 AT5G22410.1 37.202 336 191 11 2 331 5 326 3.29e-64 206
Msa0817100 AT5G67400.1 38.816 304 182 3 30 330 27 329 9.02e-64 205
Msa0817100 AT3G49960.1 38.000 300 182 3 34 330 31 329 2.45e-63 204
Msa0817100 AT2G43480.1 38.111 307 177 7 29 330 37 335 7.76e-60 195
Msa0817100 AT4G37530.2 40.562 249 145 2 34 279 31 279 2.17e-59 192
Msa0817100 AT5G24070.1 33.923 339 204 7 5 330 4 335 3.47e-58 191
Msa0817100 AT3G17070.1 35.398 339 183 10 13 330 16 339 4.01e-58 191
Msa0817100 AT4G25980.2 45.732 164 85 3 34 197 75 234 3.53e-44 153
Msa0817100 AT5G39580.2 46.784 171 86 3 34 204 29 194 2.50e-43 149
Msa0817100 AT3G17070.2 33.333 288 162 9 58 330 4 276 3.26e-41 145
Msa0817100 AT2G24800.2 46.626 163 83 1 34 196 35 193 9.46e-41 143
Msa0817100 AT4G32320.1 26.936 297 142 10 29 311 86 321 4.29e-15 75.5
Msa0817100 AT3G42570.1 36.111 144 78 4 55 195 15 147 4.36e-15 72.0

Find 82 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACCCCTTGATCCTGTTAA+AGG 0.173311 5_3:-51953326 None:intergenic
CTTGACAATCTCTTCAACTT+TGG 0.257819 5_3:-51951895 None:intergenic
AGTCTAGGACAAACAGATTT+TGG 0.271787 5_3:-51953112 None:intergenic
CAACTACTACAAGAACTTAT+TGG 0.285025 5_3:+51953160 Msa0817100:CDS
TAATAAGATGTTTCAAGAAT+TGG 0.295395 5_3:+51953551 Msa0817100:three_prime_UTR
CTGACTTGCCATTCCCAGTT+TGG 0.295882 5_3:-51953025 None:intergenic
ATGGTTTGGAATGTATTGTT+AGG 0.303652 5_3:-51952648 None:intergenic
GTTGATCTAGTTGCTCTATC+TGG 0.307619 5_3:+51952705 Msa0817100:CDS
TTGACAATCTCTTCAACTTT+GGG 0.307680 5_3:-51951894 None:intergenic
GGAAACATTACTCCTTTAAC+AGG 0.313337 5_3:+51953314 Msa0817100:CDS
TGTGTCCTGAGTATAAAATT+TGG 0.318039 5_3:+51953486 Msa0817100:three_prime_UTR
CTTAACTAAATTCAAGCTTA+AGG 0.333245 5_3:+51952671 Msa0817100:CDS
TGAATTTAGTTAAGATGGTT+TGG 0.336203 5_3:-51952662 None:intergenic
CAAAGACTCTACAACCAAAC+TGG 0.339170 5_3:+51953011 Msa0817100:CDS
ATACTATCAATTCCACTATA+TGG 0.347237 5_3:+51951679 Msa0817100:five_prime_UTR
TTAACTAAATTCAAGCTTAA+GGG 0.348519 5_3:+51952672 Msa0817100:CDS
CAAATCCTCTAGCTGAATTA+CGG 0.358640 5_3:-51952349 None:intergenic
GAGTATAAAATTTGGGCTTT+TGG 0.362183 5_3:+51953494 Msa0817100:three_prime_UTR
GTGTCCTGAGTATAAAATTT+GGG 0.365686 5_3:+51953487 Msa0817100:three_prime_UTR
CGCACTCGGTGCCCAAGATC+TGG 0.377599 5_3:+51953083 Msa0817100:CDS
ACCAAGTTGGGATGTACCTT+TGG 0.377739 5_3:+51952569 Msa0817100:CDS
CCTCTAGCTGAATTACGGTT+TGG 0.384144 5_3:-51952344 None:intergenic
AAGCTTGAATTTAGTTAAGA+TGG 0.387881 5_3:-51952667 None:intergenic
GCAATTGAGCTGCATAGTTT+TGG 0.388025 5_3:-51953061 None:intergenic
ATGGGGACACTCTTTCTCTA+TGG 0.408307 5_3:-51952396 None:intergenic
TATCAGCACAAGAGACTGTA+TGG 0.408557 5_3:-51952415 None:intergenic
TTTGGTCTCCACCAGATCTT+GGG 0.428573 5_3:-51953094 None:intergenic
TCAGACTGGTGGACCAAGTT+GGG 0.428730 5_3:+51952557 Msa0817100:intron
TGCCAAGTCCATGGTTAAGA+TGG 0.429935 5_3:+51953292 Msa0817100:CDS
TGGTTTGGAATGTATTGTTA+GGG 0.440392 5_3:-51952647 None:intergenic
TCCCATCTTAACCATGGACT+TGG 0.441177 5_3:-51953294 None:intergenic
CCAAGTTGGGATGTACCTTT+GGG 0.443433 5_3:+51952570 Msa0817100:CDS
ACAGAATTTCATCAGAACTT+AGG 0.456756 5_3:-51953196 None:intergenic
CAGCAAGGAAGCAGCCATGC+GGG 0.463288 5_3:-51951949 None:intergenic
GTAGAGTCTTTGTCTAAAGC+TGG 0.469738 5_3:-51953000 None:intergenic
TTACTCCTTTAACAGGATCA+AGG 0.477963 5_3:+51953321 Msa0817100:CDS
TGGAATGTATTGTTAGGGGC+AGG 0.478296 5_3:-51952642 None:intergenic
ATTGAATGAACACCATATAG+TGG 0.486150 5_3:-51951691 None:intergenic
CACGAATCATCGTAAAATTG+AGG 0.489068 5_3:-51951870 None:intergenic
GGGACACTCTTTCTCTATGG+TGG 0.490238 5_3:-51952393 None:intergenic
ATGCAGCTCAATTGCGCACT+CGG 0.490653 5_3:+51953069 Msa0817100:CDS
CCCAAAGGTACATCCCAACT+TGG 0.492802 5_3:-51952570 None:intergenic
TCTCTTGGTGCAAGCATAAG+TGG 0.493124 5_3:+51952603 Msa0817100:CDS
CAAGAACTTATTGGCCAACA+AGG 0.495886 5_3:+51953169 Msa0817100:CDS
CTCTACAACCAAACTGGGAA+TGG 0.498579 5_3:+51953017 Msa0817100:CDS
TTGGGAAGAAGAGATTCTCT+TGG 0.501308 5_3:+51952588 Msa0817100:CDS
AGAACTTAGGAGACCCTTGT+TGG 0.510984 5_3:-51953183 None:intergenic
TACTCCTTTAACAGGATCAA+GGG 0.516424 5_3:+51953322 Msa0817100:CDS
GGTGCACCGCGAATCTCCTA+TGG 0.523145 5_3:-51952979 None:intergenic
ATTCAATCCTTTCAGACTGG+TGG 0.533760 5_3:+51952546 Msa0817100:intron
TTCAGACTGGTGGACCAAGT+TGG 0.534896 5_3:+51952556 Msa0817100:intron
GCCAAGTCCATGGTTAAGAT+GGG 0.535394 5_3:+51953293 Msa0817100:CDS
TGAACAATTTGCCAAGTCCA+TGG 0.536039 5_3:+51953283 Msa0817100:CDS
TGTCAAGTCTGTAGTTGCTA+AGG 0.554979 5_3:+51951911 Msa0817100:CDS
CATCGTAAAATTGAGGGTAG+AGG 0.558315 5_3:-51951863 None:intergenic
ACGAATCATCGTAAAATTGA+GGG 0.562308 5_3:-51951869 None:intergenic
TGACAATCTCTTCAACTTTG+GGG 0.569992 5_3:-51951893 None:intergenic
TTACCGGTGTGACAAAGTCT+AGG 0.570159 5_3:-51953127 None:intergenic
CCAAACCGTAATTCAGCTAG+AGG 0.570737 5_3:+51952344 Msa0817100:CDS
TTTGCAGGGTTGTGATGCAT+CGG 0.577809 5_3:+51952274 Msa0817100:intron
GAACAATCATCAGCGAAAAG+AGG 0.590852 5_3:+51952315 Msa0817100:CDS
AATGTTTCCCATCTTAACCA+TGG 0.593838 5_3:-51953300 None:intergenic
AGCAAGGAAGCAGCCATGCG+GGG 0.595766 5_3:-51951948 None:intergenic
ATACCTTGACAAAACAGTCA+TGG 0.599142 5_3:-51951983 None:intergenic
GTTATAGGTAGCCACACCAT+AGG 0.605653 5_3:+51952963 Msa0817100:intron
TGATCTTCAAAGAGAAACAA+TGG 0.608573 5_3:+51951758 Msa0817100:exon
GCCACACCATAGGAGATTCG+CGG 0.611411 5_3:+51952973 Msa0817100:CDS
ATCAGCACAAGAGACTGTAT+GGG 0.616020 5_3:-51952414 None:intergenic
TGTCGCTAAAGAACCCCGCA+TGG 0.629260 5_3:+51951935 Msa0817100:CDS
ACCGCGAATCTCCTATGGTG+TGG 0.629403 5_3:-51952974 None:intergenic
AAAGACTCTACAACCAAACT+GGG 0.636762 5_3:+51953012 Msa0817100:CDS
ACTCGGTGCCCAAGATCTGG+TGG 0.639184 5_3:+51953086 Msa0817100:CDS
AGAGAATCTCTTCTTCCCAA+AGG 0.641536 5_3:-51952585 None:intergenic
TGTCCTAGACTTTGTCACAC+CGG 0.643380 5_3:+51953124 Msa0817100:CDS
GGACACAGCGACTATGCCAA+TGG 0.644492 5_3:-51953470 None:intergenic
ACTCCTTTAACAGGATCAAG+GGG 0.648428 5_3:+51953323 Msa0817100:CDS
ATGGAAATGTAGTCTCAGCA+AGG 0.653675 5_3:-51951964 None:intergenic
TCAGCAAGGAAGCAGCCATG+CGG 0.656575 5_3:-51951950 None:intergenic
GGTTTGGAATGTATTGTTAG+GGG 0.668824 5_3:-51952646 None:intergenic
AAGAACTTATTGGCCAACAA+GGG 0.679001 5_3:+51953170 Msa0817100:CDS
TCGGTGTTGCTAGATAGCAG+TGG 0.688736 5_3:+51952293 Msa0817100:CDS
TCAGCACAAGAGACTGTATG+GGG 0.717540 5_3:-51952413 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAAAATTTATTATGAAAG+AGG - chr5_3:51951730-51951749 None:intergenic 15.0%
!! AACAAAATTTATTATGAAAG+AGG - chr5_3:51951730-51951749 None:intergenic 15.0%
!! GTAAACAATGTTTAAAAATG+TGG + chr5_3:51952016-51952035 Msa0817100:intron 20.0%
!!! TGTTATTTTTTAAAACCTTG+TGG + chr5_3:51952123-51952142 Msa0817100:intron 20.0%
!!! ACTTGATATTTAACTTTTGA+TGG - chr5_3:51952521-51952540 None:intergenic 20.0%
!! TTAACTAAATTCAAGCTTAA+GGG + chr5_3:51952672-51952691 Msa0817100:CDS 20.0%
!! GAAGAAAATTGAGATAAATT+TGG - chr5_3:51952886-51952905 None:intergenic 20.0%
!!! AATTTTCTTCATTTGAGTTT+TGG + chr5_3:51952896-51952915 Msa0817100:intron 20.0%
!! ACAAATTCTTGTAATGTTAT+AGG + chr5_3:51952948-51952967 Msa0817100:intron 20.0%
!! TAATAAGATGTTTCAAGAAT+TGG + chr5_3:51953551-51953570 Msa0817100:three_prime_UTR 20.0%
!! GTAAACAATGTTTAAAAATG+TGG + chr5_3:51952016-51952035 Msa0817100:intron 20.0%
!!! TGTTATTTTTTAAAACCTTG+TGG + chr5_3:51952123-51952142 Msa0817100:intron 20.0%
!!! ACTTGATATTTAACTTTTGA+TGG - chr5_3:51952521-51952540 None:intergenic 20.0%
!! TTAACTAAATTCAAGCTTAA+GGG + chr5_3:51952672-51952691 Msa0817100:CDS 20.0%
!! GAAGAAAATTGAGATAAATT+TGG - chr5_3:51952886-51952905 None:intergenic 20.0%
!!! AATTTTCTTCATTTGAGTTT+TGG + chr5_3:51952896-51952915 Msa0817100:intron 20.0%
!! ACAAATTCTTGTAATGTTAT+AGG + chr5_3:51952948-51952967 Msa0817100:intron 20.0%
!! TAATAAGATGTTTCAAGAAT+TGG + chr5_3:51953551-51953570 Msa0817100:three_prime_UTR 20.0%
! ATACTATCAATTCCACTATA+TGG + chr5_3:51951679-51951698 Msa0817100:five_prime_UTR 25.0%
! AATGTTTAAAAATGTGGTCA+TGG + chr5_3:51952022-51952041 Msa0817100:intron 25.0%
! TGATCTATGAGTTGTATATT+GGG + chr5_3:51952186-51952205 Msa0817100:intron 25.0%
! TGAATTTAGTTAAGATGGTT+TGG - chr5_3:51952665-51952684 None:intergenic 25.0%
! AAGCTTGAATTTAGTTAAGA+TGG - chr5_3:51952670-51952689 None:intergenic 25.0%
! CTTAACTAAATTCAAGCTTA+AGG + chr5_3:51952671-51952690 Msa0817100:CDS 25.0%
! ATACTATCAATTCCACTATA+TGG + chr5_3:51951679-51951698 Msa0817100:five_prime_UTR 25.0%
! AATGTTTAAAAATGTGGTCA+TGG + chr5_3:51952022-51952041 Msa0817100:intron 25.0%
! TGATCTATGAGTTGTATATT+GGG + chr5_3:51952186-51952205 Msa0817100:intron 25.0%
! TGAATTTAGTTAAGATGGTT+TGG - chr5_3:51952665-51952684 None:intergenic 25.0%
! AAGCTTGAATTTAGTTAAGA+TGG - chr5_3:51952670-51952689 None:intergenic 25.0%
! CTTAACTAAATTCAAGCTTA+AGG + chr5_3:51952671-51952690 Msa0817100:CDS 25.0%
ATTGAATGAACACCATATAG+TGG - chr5_3:51951694-51951713 None:intergenic 30.0%
TGATCTTCAAAGAGAAACAA+TGG + chr5_3:51951758-51951777 Msa0817100:exon 30.0%
ATACTAGTAGAGAAAAAAGC+AGG - chr5_3:51951803-51951822 None:intergenic 30.0%
! TTCTTTTTACAGTGACAGAA+GGG - chr5_3:51951831-51951850 None:intergenic 30.0%
! TTTCTTTTTACAGTGACAGA+AGG - chr5_3:51951832-51951851 None:intergenic 30.0%
CACTGTAAAAAGAAAGTTGA+TGG + chr5_3:51951837-51951856 Msa0817100:CDS 30.0%
ACGAATCATCGTAAAATTGA+GGG - chr5_3:51951872-51951891 None:intergenic 30.0%
TTGACAATCTCTTCAACTTT+GGG - chr5_3:51951897-51951916 None:intergenic 30.0%
CATAAAAAACCTTAACGATG+TGG + chr5_3:51952083-51952102 Msa0817100:intron 30.0%
! ATTTTCTATTTGCATCCACA+AGG - chr5_3:51952141-51952160 None:intergenic 30.0%
GTGATCTATGAGTTGTATAT+TGG + chr5_3:51952185-51952204 Msa0817100:intron 30.0%
!! ATGACAAAAGTTGATTTTGC+AGG + chr5_3:51952259-51952278 Msa0817100:intron 30.0%
!! TGACAAAAGTTGATTTTGCA+GGG + chr5_3:51952260-51952279 Msa0817100:intron 30.0%
!! CTTTTGATGGTCATTGATAA+GGG - chr5_3:51952508-51952527 None:intergenic 30.0%
!! ACTTTTGATGGTCATTGATA+AGG - chr5_3:51952509-51952528 None:intergenic 30.0%
AATATTCAATCCTTTCAGAC+TGG + chr5_3:51952543-51952562 Msa0817100:intron 30.0%
! TGGTTTGGAATGTATTGTTA+GGG - chr5_3:51952650-51952669 None:intergenic 30.0%
! ATGGTTTGGAATGTATTGTT+AGG - chr5_3:51952651-51952670 None:intergenic 30.0%
!! AGATGAAATGGATTAGTACT+AGG - chr5_3:51952737-51952756 None:intergenic 30.0%
TGAAAACAATGGAGATGAAA+TGG - chr5_3:51952749-51952768 None:intergenic 30.0%
CAAGTATGTGTTGAAAACAA+TGG - chr5_3:51952760-51952779 None:intergenic 30.0%
! CATTGTTTTCAACACATACT+TGG + chr5_3:51952758-51952777 Msa0817100:intron 30.0%
! TAGTTGTTGTCGAATTTTAC+CGG - chr5_3:51953146-51953165 None:intergenic 30.0%
CAACTACTACAAGAACTTAT+TGG + chr5_3:51953160-51953179 Msa0817100:CDS 30.0%
ACAGAATTTCATCAGAACTT+AGG - chr5_3:51953199-51953218 None:intergenic 30.0%
CCAATGGCTTCATAAAAAAA+TGG - chr5_3:51953457-51953476 None:intergenic 30.0%
!!! CCATTTTTTTATGAAGCCAT+TGG + chr5_3:51953454-51953473 Msa0817100:three_prime_UTR 30.0%
TGTGTCCTGAGTATAAAATT+TGG + chr5_3:51953486-51953505 Msa0817100:three_prime_UTR 30.0%
GTGTCCTGAGTATAAAATTT+GGG + chr5_3:51953487-51953506 Msa0817100:three_prime_UTR 30.0%
! AAAGCCCAAATTTTATACTC+AGG - chr5_3:51953494-51953513 None:intergenic 30.0%
! GAGTATAAAATTTGGGCTTT+TGG + chr5_3:51953494-51953513 Msa0817100:three_prime_UTR 30.0%
ATTGAATGAACACCATATAG+TGG - chr5_3:51951694-51951713 None:intergenic 30.0%
TGATCTTCAAAGAGAAACAA+TGG + chr5_3:51951758-51951777 Msa0817100:exon 30.0%
ATACTAGTAGAGAAAAAAGC+AGG - chr5_3:51951803-51951822 None:intergenic 30.0%
! TTCTTTTTACAGTGACAGAA+GGG - chr5_3:51951831-51951850 None:intergenic 30.0%
! TTTCTTTTTACAGTGACAGA+AGG - chr5_3:51951832-51951851 None:intergenic 30.0%
CACTGTAAAAAGAAAGTTGA+TGG + chr5_3:51951837-51951856 Msa0817100:CDS 30.0%
ACGAATCATCGTAAAATTGA+GGG - chr5_3:51951872-51951891 None:intergenic 30.0%
TTGACAATCTCTTCAACTTT+GGG - chr5_3:51951897-51951916 None:intergenic 30.0%
CATAAAAAACCTTAACGATG+TGG + chr5_3:51952083-51952102 Msa0817100:intron 30.0%
! ATTTTCTATTTGCATCCACA+AGG - chr5_3:51952141-51952160 None:intergenic 30.0%
GTGATCTATGAGTTGTATAT+TGG + chr5_3:51952185-51952204 Msa0817100:intron 30.0%
!! ATGACAAAAGTTGATTTTGC+AGG + chr5_3:51952259-51952278 Msa0817100:intron 30.0%
!! TGACAAAAGTTGATTTTGCA+GGG + chr5_3:51952260-51952279 Msa0817100:intron 30.0%
!! CTTTTGATGGTCATTGATAA+GGG - chr5_3:51952508-51952527 None:intergenic 30.0%
!! ACTTTTGATGGTCATTGATA+AGG - chr5_3:51952509-51952528 None:intergenic 30.0%
AATATTCAATCCTTTCAGAC+TGG + chr5_3:51952543-51952562 Msa0817100:intron 30.0%
! TGGTTTGGAATGTATTGTTA+GGG - chr5_3:51952650-51952669 None:intergenic 30.0%
! ATGGTTTGGAATGTATTGTT+AGG - chr5_3:51952651-51952670 None:intergenic 30.0%
!! AGATGAAATGGATTAGTACT+AGG - chr5_3:51952737-51952756 None:intergenic 30.0%
TGAAAACAATGGAGATGAAA+TGG - chr5_3:51952749-51952768 None:intergenic 30.0%
CAAGTATGTGTTGAAAACAA+TGG - chr5_3:51952760-51952779 None:intergenic 30.0%
! CATTGTTTTCAACACATACT+TGG + chr5_3:51952758-51952777 Msa0817100:intron 30.0%
! TAGTTGTTGTCGAATTTTAC+CGG - chr5_3:51953146-51953165 None:intergenic 30.0%
CAACTACTACAAGAACTTAT+TGG + chr5_3:51953160-51953179 Msa0817100:CDS 30.0%
ACAGAATTTCATCAGAACTT+AGG - chr5_3:51953199-51953218 None:intergenic 30.0%
CCAATGGCTTCATAAAAAAA+TGG - chr5_3:51953457-51953476 None:intergenic 30.0%
!!! CCATTTTTTTATGAAGCCAT+TGG + chr5_3:51953454-51953473 Msa0817100:three_prime_UTR 30.0%
TGTGTCCTGAGTATAAAATT+TGG + chr5_3:51953486-51953505 Msa0817100:three_prime_UTR 30.0%
GTGTCCTGAGTATAAAATTT+GGG + chr5_3:51953487-51953506 Msa0817100:three_prime_UTR 30.0%
! AAAGCCCAAATTTTATACTC+AGG - chr5_3:51953494-51953513 None:intergenic 30.0%
! GAGTATAAAATTTGGGCTTT+TGG + chr5_3:51953494-51953513 Msa0817100:three_prime_UTR 30.0%
TGGTGTTCATTCAATACAGT+TGG + chr5_3:51951699-51951718 Msa0817100:intron 35.0%
CACGAATCATCGTAAAATTG+AGG - chr5_3:51951873-51951892 None:intergenic 35.0%
TGACAATCTCTTCAACTTTG+GGG - chr5_3:51951896-51951915 None:intergenic 35.0%
CTTGACAATCTCTTCAACTT+TGG - chr5_3:51951898-51951917 None:intergenic 35.0%
! TTTCCATGACTGTTTTGTCA+AGG + chr5_3:51951980-51951999 Msa0817100:CDS 35.0%
ATACCTTGACAAAACAGTCA+TGG - chr5_3:51951986-51952005 None:intergenic 35.0%
! TTTTATATATAACCGCGACG+TGG + chr5_3:51952053-51952072 Msa0817100:intron 35.0%
ATGAGTTGTATATTGGGTGT+TGG + chr5_3:51952192-51952211 Msa0817100:intron 35.0%
CAAATCCTCTAGCTGAATTA+CGG - chr5_3:51952352-51952371 None:intergenic 35.0%
GCAATAGAGTAGAAAACAAG+AGG - chr5_3:51952486-51952505 None:intergenic 35.0%
! GGTTTGGAATGTATTGTTAG+GGG - chr5_3:51952649-51952668 None:intergenic 35.0%
AAAGACTCTACAACCAAACT+GGG + chr5_3:51953012-51953031 Msa0817100:CDS 35.0%
!! AGTCTAGGACAAACAGATTT+TGG - chr5_3:51953115-51953134 None:intergenic 35.0%
AAGAACTTATTGGCCAACAA+GGG + chr5_3:51953170-51953189 Msa0817100:CDS 35.0%
AATGTTTCCCATCTTAACCA+TGG - chr5_3:51953303-51953322 None:intergenic 35.0%
GGAAACATTACTCCTTTAAC+AGG + chr5_3:51953314-51953333 Msa0817100:CDS 35.0%
TTACTCCTTTAACAGGATCA+AGG + chr5_3:51953321-51953340 Msa0817100:CDS 35.0%
TACTCCTTTAACAGGATCAA+GGG + chr5_3:51953322-51953341 Msa0817100:CDS 35.0%
TGGTGTTCATTCAATACAGT+TGG + chr5_3:51951699-51951718 Msa0817100:intron 35.0%
CACGAATCATCGTAAAATTG+AGG - chr5_3:51951873-51951892 None:intergenic 35.0%
TGACAATCTCTTCAACTTTG+GGG - chr5_3:51951896-51951915 None:intergenic 35.0%
CTTGACAATCTCTTCAACTT+TGG - chr5_3:51951898-51951917 None:intergenic 35.0%
! TTTCCATGACTGTTTTGTCA+AGG + chr5_3:51951980-51951999 Msa0817100:CDS 35.0%
ATACCTTGACAAAACAGTCA+TGG - chr5_3:51951986-51952005 None:intergenic 35.0%
! TTTTATATATAACCGCGACG+TGG + chr5_3:51952053-51952072 Msa0817100:intron 35.0%
ATGAGTTGTATATTGGGTGT+TGG + chr5_3:51952192-51952211 Msa0817100:intron 35.0%
CAAATCCTCTAGCTGAATTA+CGG - chr5_3:51952352-51952371 None:intergenic 35.0%
GCAATAGAGTAGAAAACAAG+AGG - chr5_3:51952486-51952505 None:intergenic 35.0%
! GGTTTGGAATGTATTGTTAG+GGG - chr5_3:51952649-51952668 None:intergenic 35.0%
AAAGACTCTACAACCAAACT+GGG + chr5_3:51953012-51953031 Msa0817100:CDS 35.0%
!! AGTCTAGGACAAACAGATTT+TGG - chr5_3:51953115-51953134 None:intergenic 35.0%
AAGAACTTATTGGCCAACAA+GGG + chr5_3:51953170-51953189 Msa0817100:CDS 35.0%
AATGTTTCCCATCTTAACCA+TGG - chr5_3:51953303-51953322 None:intergenic 35.0%
GGAAACATTACTCCTTTAAC+AGG + chr5_3:51953314-51953333 Msa0817100:CDS 35.0%
TTACTCCTTTAACAGGATCA+AGG + chr5_3:51953321-51953340 Msa0817100:CDS 35.0%
TACTCCTTTAACAGGATCAA+GGG + chr5_3:51953322-51953341 Msa0817100:CDS 35.0%
CATCGTAAAATTGAGGGTAG+AGG - chr5_3:51951866-51951885 None:intergenic 40.0%
TGTCAAGTCTGTAGTTGCTA+AGG + chr5_3:51951911-51951930 Msa0817100:CDS 40.0%
ATGGAAATGTAGTCTCAGCA+AGG - chr5_3:51951967-51951986 None:intergenic 40.0%
CAATTGTAGCCACATCGTTA+AGG - chr5_3:51952095-51952114 None:intergenic 40.0%
GAACAATCATCAGCGAAAAG+AGG + chr5_3:51952315-51952334 Msa0817100:CDS 40.0%
ATCAGCACAAGAGACTGTAT+GGG - chr5_3:51952417-51952436 None:intergenic 40.0%
TATCAGCACAAGAGACTGTA+TGG - chr5_3:51952418-51952437 None:intergenic 40.0%
ATTCAATCCTTTCAGACTGG+TGG + chr5_3:51952546-51952565 Msa0817100:intron 40.0%
AGAGAATCTCTTCTTCCCAA+AGG - chr5_3:51952588-51952607 None:intergenic 40.0%
TTGGGAAGAAGAGATTCTCT+TGG + chr5_3:51952588-51952607 Msa0817100:CDS 40.0%
GTTGATCTAGTTGCTCTATC+TGG + chr5_3:51952705-51952724 Msa0817100:CDS 40.0%
CTGCAACACAATCTCTATCA+CGG - chr5_3:51952826-51952845 None:intergenic 40.0%
TTATGCCACTGATGCAACTA+CGG - chr5_3:51952928-51952947 None:intergenic 40.0%
! GTAGAGTCTTTGTCTAAAGC+TGG - chr5_3:51953003-51953022 None:intergenic 40.0%
CAAAGACTCTACAACCAAAC+TGG + chr5_3:51953011-51953030 Msa0817100:CDS 40.0%
! GCAATTGAGCTGCATAGTTT+TGG - chr5_3:51953064-51953083 None:intergenic 40.0%
CAAGAACTTATTGGCCAACA+AGG + chr5_3:51953169-51953188 Msa0817100:CDS 40.0%
TGAACAATTTGCCAAGTCCA+TGG + chr5_3:51953283-51953302 Msa0817100:CDS 40.0%
ACTCCTTTAACAGGATCAAG+GGG + chr5_3:51953323-51953342 Msa0817100:CDS 40.0%
CATCGTAAAATTGAGGGTAG+AGG - chr5_3:51951866-51951885 None:intergenic 40.0%
TGTCAAGTCTGTAGTTGCTA+AGG + chr5_3:51951911-51951930 Msa0817100:CDS 40.0%
ATGGAAATGTAGTCTCAGCA+AGG - chr5_3:51951967-51951986 None:intergenic 40.0%
CAATTGTAGCCACATCGTTA+AGG - chr5_3:51952095-51952114 None:intergenic 40.0%
GAACAATCATCAGCGAAAAG+AGG + chr5_3:51952315-51952334 Msa0817100:CDS 40.0%
ATCAGCACAAGAGACTGTAT+GGG - chr5_3:51952417-51952436 None:intergenic 40.0%
TATCAGCACAAGAGACTGTA+TGG - chr5_3:51952418-51952437 None:intergenic 40.0%
ATTCAATCCTTTCAGACTGG+TGG + chr5_3:51952546-51952565 Msa0817100:intron 40.0%
AGAGAATCTCTTCTTCCCAA+AGG - chr5_3:51952588-51952607 None:intergenic 40.0%
TTGGGAAGAAGAGATTCTCT+TGG + chr5_3:51952588-51952607 Msa0817100:CDS 40.0%
GTTGATCTAGTTGCTCTATC+TGG + chr5_3:51952705-51952724 Msa0817100:CDS 40.0%
CTGCAACACAATCTCTATCA+CGG - chr5_3:51952826-51952845 None:intergenic 40.0%
TTATGCCACTGATGCAACTA+CGG - chr5_3:51952928-51952947 None:intergenic 40.0%
! GTAGAGTCTTTGTCTAAAGC+TGG - chr5_3:51953003-51953022 None:intergenic 40.0%
CAAAGACTCTACAACCAAAC+TGG + chr5_3:51953011-51953030 Msa0817100:CDS 40.0%
! GCAATTGAGCTGCATAGTTT+TGG - chr5_3:51953064-51953083 None:intergenic 40.0%
CAAGAACTTATTGGCCAACA+AGG + chr5_3:51953169-51953188 Msa0817100:CDS 40.0%
TGAACAATTTGCCAAGTCCA+TGG + chr5_3:51953283-51953302 Msa0817100:CDS 40.0%
ACTCCTTTAACAGGATCAAG+GGG + chr5_3:51953323-51953342 Msa0817100:CDS 40.0%
TTTGCAGGGTTGTGATGCAT+CGG + chr5_3:51952274-51952293 Msa0817100:intron 45.0%
CCTCTAGCTGAATTACGGTT+TGG - chr5_3:51952347-51952366 None:intergenic 45.0%
CCAAACCGTAATTCAGCTAG+AGG + chr5_3:51952344-51952363 Msa0817100:CDS 45.0%
ATGGGGACACTCTTTCTCTA+TGG - chr5_3:51952399-51952418 None:intergenic 45.0%
TCAGCACAAGAGACTGTATG+GGG - chr5_3:51952416-51952435 None:intergenic 45.0%
! ACCAAGTTGGGATGTACCTT+TGG + chr5_3:51952569-51952588 Msa0817100:CDS 45.0%
! CCAAGTTGGGATGTACCTTT+GGG + chr5_3:51952570-51952589 Msa0817100:CDS 45.0%
! TCTCTTGGTGCAAGCATAAG+TGG + chr5_3:51952603-51952622 Msa0817100:CDS 45.0%
TGGAATGTATTGTTAGGGGC+AGG - chr5_3:51952645-51952664 None:intergenic 45.0%
TTCTTCCGTAGTTGCATCAG+TGG + chr5_3:51952920-51952939 Msa0817100:intron 45.0%
GTTATAGGTAGCCACACCAT+AGG + chr5_3:51952963-51952982 Msa0817100:intron 45.0%
CTCTACAACCAAACTGGGAA+TGG + chr5_3:51953017-51953036 Msa0817100:CDS 45.0%
TTTGGTCTCCACCAGATCTT+GGG - chr5_3:51953097-51953116 None:intergenic 45.0%
! TTTTGGTCTCCACCAGATCT+TGG - chr5_3:51953098-51953117 None:intergenic 45.0%
TGTCCTAGACTTTGTCACAC+CGG + chr5_3:51953124-51953143 Msa0817100:CDS 45.0%
TTACCGGTGTGACAAAGTCT+AGG - chr5_3:51953130-51953149 None:intergenic 45.0%
AGAACTTAGGAGACCCTTGT+TGG - chr5_3:51953186-51953205 None:intergenic 45.0%
TGCCAAGTCCATGGTTAAGA+TGG + chr5_3:51953292-51953311 Msa0817100:CDS 45.0%
GCCAAGTCCATGGTTAAGAT+GGG + chr5_3:51953293-51953312 Msa0817100:CDS 45.0%
TCCCATCTTAACCATGGACT+TGG - chr5_3:51953297-51953316 None:intergenic 45.0%
TCACCCCTTGATCCTGTTAA+AGG - chr5_3:51953329-51953348 None:intergenic 45.0%
TTTGCAGGGTTGTGATGCAT+CGG + chr5_3:51952274-51952293 Msa0817100:intron 45.0%
CCTCTAGCTGAATTACGGTT+TGG - chr5_3:51952347-51952366 None:intergenic 45.0%
CCAAACCGTAATTCAGCTAG+AGG + chr5_3:51952344-51952363 Msa0817100:CDS 45.0%
ATGGGGACACTCTTTCTCTA+TGG - chr5_3:51952399-51952418 None:intergenic 45.0%
TCAGCACAAGAGACTGTATG+GGG - chr5_3:51952416-51952435 None:intergenic 45.0%
! ACCAAGTTGGGATGTACCTT+TGG + chr5_3:51952569-51952588 Msa0817100:CDS 45.0%
! CCAAGTTGGGATGTACCTTT+GGG + chr5_3:51952570-51952589 Msa0817100:CDS 45.0%
! TCTCTTGGTGCAAGCATAAG+TGG + chr5_3:51952603-51952622 Msa0817100:CDS 45.0%
TGGAATGTATTGTTAGGGGC+AGG - chr5_3:51952645-51952664 None:intergenic 45.0%
TTCTTCCGTAGTTGCATCAG+TGG + chr5_3:51952920-51952939 Msa0817100:intron 45.0%
GTTATAGGTAGCCACACCAT+AGG + chr5_3:51952963-51952982 Msa0817100:intron 45.0%
CTCTACAACCAAACTGGGAA+TGG + chr5_3:51953017-51953036 Msa0817100:CDS 45.0%
TTTGGTCTCCACCAGATCTT+GGG - chr5_3:51953097-51953116 None:intergenic 45.0%
! TTTTGGTCTCCACCAGATCT+TGG - chr5_3:51953098-51953117 None:intergenic 45.0%
TGTCCTAGACTTTGTCACAC+CGG + chr5_3:51953124-51953143 Msa0817100:CDS 45.0%
TTACCGGTGTGACAAAGTCT+AGG - chr5_3:51953130-51953149 None:intergenic 45.0%
AGAACTTAGGAGACCCTTGT+TGG - chr5_3:51953186-51953205 None:intergenic 45.0%
TGCCAAGTCCATGGTTAAGA+TGG + chr5_3:51953292-51953311 Msa0817100:CDS 45.0%
GCCAAGTCCATGGTTAAGAT+GGG + chr5_3:51953293-51953312 Msa0817100:CDS 45.0%
TCCCATCTTAACCATGGACT+TGG - chr5_3:51953297-51953316 None:intergenic 45.0%
TCACCCCTTGATCCTGTTAA+AGG - chr5_3:51953329-51953348 None:intergenic 45.0%
TTATGTGTCTGACCACGTCG+CGG - chr5_3:51952068-51952087 None:intergenic 50.0%
!! TCGGTGTTGCTAGATAGCAG+TGG + chr5_3:51952293-51952312 Msa0817100:CDS 50.0%
GGGACACTCTTTCTCTATGG+TGG - chr5_3:51952396-51952415 None:intergenic 50.0%
ACTTGGTCCACCAGTCTGAA+AGG - chr5_3:51952556-51952575 None:intergenic 50.0%
! TTCAGACTGGTGGACCAAGT+TGG + chr5_3:51952556-51952575 Msa0817100:intron 50.0%
! TCAGACTGGTGGACCAAGTT+GGG + chr5_3:51952557-51952576 Msa0817100:intron 50.0%
! CCCAAAGGTACATCCCAACT+TGG - chr5_3:51952573-51952592 None:intergenic 50.0%
! CTGACTTGCCATTCCCAGTT+TGG - chr5_3:51953028-51953047 None:intergenic 50.0%
ATGCAGCTCAATTGCGCACT+CGG + chr5_3:51953069-51953088 Msa0817100:CDS 50.0%
TTATGTGTCTGACCACGTCG+CGG - chr5_3:51952068-51952087 None:intergenic 50.0%
!! TCGGTGTTGCTAGATAGCAG+TGG + chr5_3:51952293-51952312 Msa0817100:CDS 50.0%
GGGACACTCTTTCTCTATGG+TGG - chr5_3:51952396-51952415 None:intergenic 50.0%
ACTTGGTCCACCAGTCTGAA+AGG - chr5_3:51952556-51952575 None:intergenic 50.0%
! TTCAGACTGGTGGACCAAGT+TGG + chr5_3:51952556-51952575 Msa0817100:intron 50.0%
! TCAGACTGGTGGACCAAGTT+GGG + chr5_3:51952557-51952576 Msa0817100:intron 50.0%
! CCCAAAGGTACATCCCAACT+TGG - chr5_3:51952573-51952592 None:intergenic 50.0%
! CTGACTTGCCATTCCCAGTT+TGG - chr5_3:51953028-51953047 None:intergenic 50.0%
ATGCAGCTCAATTGCGCACT+CGG + chr5_3:51953069-51953088 Msa0817100:CDS 50.0%
TGTCGCTAAAGAACCCCGCA+TGG + chr5_3:51951935-51951954 Msa0817100:CDS 55.0%
TCAGCAAGGAAGCAGCCATG+CGG - chr5_3:51951953-51951972 None:intergenic 55.0%
GCCACACCATAGGAGATTCG+CGG + chr5_3:51952973-51952992 Msa0817100:CDS 55.0%
ACCGCGAATCTCCTATGGTG+TGG - chr5_3:51952977-51952996 None:intergenic 55.0%
GGACACAGCGACTATGCCAA+TGG - chr5_3:51953473-51953492 None:intergenic 55.0%
TGTCGCTAAAGAACCCCGCA+TGG + chr5_3:51951935-51951954 Msa0817100:CDS 55.0%
TCAGCAAGGAAGCAGCCATG+CGG - chr5_3:51951953-51951972 None:intergenic 55.0%
GCCACACCATAGGAGATTCG+CGG + chr5_3:51952973-51952992 Msa0817100:CDS 55.0%
ACCGCGAATCTCCTATGGTG+TGG - chr5_3:51952977-51952996 None:intergenic 55.0%
GGACACAGCGACTATGCCAA+TGG - chr5_3:51953473-51953492 None:intergenic 55.0%
AGCAAGGAAGCAGCCATGCG+GGG - chr5_3:51951951-51951970 None:intergenic 60.0%
CAGCAAGGAAGCAGCCATGC+GGG - chr5_3:51951952-51951971 None:intergenic 60.0%
GGTGCACCGCGAATCTCCTA+TGG - chr5_3:51952982-51953001 None:intergenic 60.0%
!! ACTCGGTGCCCAAGATCTGG+TGG + chr5_3:51953086-51953105 Msa0817100:CDS 60.0%
AGCAAGGAAGCAGCCATGCG+GGG - chr5_3:51951951-51951970 None:intergenic 60.0%
CAGCAAGGAAGCAGCCATGC+GGG - chr5_3:51951952-51951971 None:intergenic 60.0%
GGTGCACCGCGAATCTCCTA+TGG - chr5_3:51952982-51953001 None:intergenic 60.0%
!! ACTCGGTGCCCAAGATCTGG+TGG + chr5_3:51953086-51953105 Msa0817100:CDS 60.0%
!! CGCACTCGGTGCCCAAGATC+TGG + chr5_3:51953083-51953102 Msa0817100:CDS 65.0%
!! CGCACTCGGTGCCCAAGATC+TGG + chr5_3:51953083-51953102 Msa0817100:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 51951650 51953618 51951650 ID=Msa0817100;Name=Msa0817100
chr5_3 mRNA 51951650 51953618 51951650 ID=Msa0817100-mRNA-1;Parent=Msa0817100;Name=Msa0817100-mRNA-1;_AED=0.10;_eAED=0.10;_QI=107|1|1|1|0.75|0.6|5|236|331
chr5_3 exon 51951650 51951716 51951650 ID=Msa0817100-mRNA-1:exon:15572;Parent=Msa0817100-mRNA-1
chr5_3 exon 51951737 51952001 51951737 ID=Msa0817100-mRNA-1:exon:15573;Parent=Msa0817100-mRNA-1
chr5_3 exon 51952281 51952472 51952281 ID=Msa0817100-mRNA-1:exon:15574;Parent=Msa0817100-mRNA-1
chr5_3 exon 51952561 51952726 51952561 ID=Msa0817100-mRNA-1:exon:15575;Parent=Msa0817100-mRNA-1
chr5_3 exon 51952970 51953618 51952970 ID=Msa0817100-mRNA-1:exon:15576;Parent=Msa0817100-mRNA-1
chr5_3 five_prime_UTR 51951650 51951716 51951650 ID=Msa0817100-mRNA-1:five_prime_utr;Parent=Msa0817100-mRNA-1
chr5_3 five_prime_UTR 51951737 51951776 51951737 ID=Msa0817100-mRNA-1:five_prime_utr;Parent=Msa0817100-mRNA-1
chr5_3 CDS 51951777 51952001 51951777 ID=Msa0817100-mRNA-1:cds;Parent=Msa0817100-mRNA-1
chr5_3 CDS 51952281 51952472 51952281 ID=Msa0817100-mRNA-1:cds;Parent=Msa0817100-mRNA-1
chr5_3 CDS 51952561 51952726 51952561 ID=Msa0817100-mRNA-1:cds;Parent=Msa0817100-mRNA-1
chr5_3 CDS 51952970 51953382 51952970 ID=Msa0817100-mRNA-1:cds;Parent=Msa0817100-mRNA-1
chr5_3 three_prime_UTR 51953383 51953618 51953383 ID=Msa0817100-mRNA-1:three_prime_utr;Parent=Msa0817100-mRNA-1
Gene Sequence

>Msa0817100

ATGGTCAATTCTATAAACTTTCTCCTGCTTTTTTCTCTACTAGTATTTGCTCCCTTCTGTCACTGTAAAAAGAAAGTTGATGGTTACCTCTACCCTCAATTTTACGATGATTCGTGCCCCAAAGTTGAAGAGATTGTCAAGTCTGTAGTTGCTAAGGCTGTCGCTAAAGAACCCCGCATGGCTGCTTCCTTGCTGAGACTACATTTCCATGACTGTTTTGTCAAGGGTTGTGATGCATCGGTGTTGCTAGATAGCAGTGGAACAATCATCAGCGAAAAGAGGTCAAATCCAAACCGTAATTCAGCTAGAGGATTTGAAGTCATTGAAGAAATTAAATCCACCATAGAGAAAGAGTGTCCCCATACAGTCTCTTGTGCTGATATTTTGACTCTTGCTGCTAGAGATTCAACTGTTCTTACTGGTGGACCAAGTTGGGATGTACCTTTGGGAAGAAGAGATTCTCTTGGTGCAAGCATAAGTGGCTCAAACAACAACATTCCTGCCCCTAACAATACATTCCAAACCATCTTAACTAAATTCAAGCTTAAGGGACTTAACATTGTTGATCTAGTTGCTCTATCTGGTAGCCACACCATAGGAGATTCGCGGTGCACCAGCTTTAGACAAAGACTCTACAACCAAACTGGGAATGGCAAGTCAGATTTCACTCTTGACCAAAACTATGCAGCTCAATTGCGCACTCGGTGCCCAAGATCTGGTGGAGACCAAAATCTGTTTGTCCTAGACTTTGTCACACCGGTAAAATTCGACAACAACTACTACAAGAACTTATTGGCCAACAAGGGTCTCCTAAGTTCTGATGAAATTCTGTTGACAAAGAATCAAGTATCTGCAGATTTAGTGAAAAAGTATGCAGAAAGCAATGATCTTTTCTTTGAACAATTTGCCAAGTCCATGGTTAAGATGGGAAACATTACTCCTTTAACAGGATCAAGGGGTGAAATCAGAAAACGTTGCAGAAAGATTAATAACTGA

Protein sequence

>Msa0817100

MVNSINFLLLFSLLVFAPFCHCKKKVDGYLYPQFYDDSCPKVEEIVKSVVAKAVAKEPRMAASLLRLHFHDCFVKGCDASVLLDSSGTIISEKRSNPNRNSARGFEVIEEIKSTIEKECPHTVSCADILTLAARDSTVLTGGPSWDVPLGRRDSLGASISGSNNNIPAPNNTFQTILTKFKLKGLNIVDLVALSGSHTIGDSRCTSFRQRLYNQTGNGKSDFTLDQNYAAQLRTRCPRSGGDQNLFVLDFVTPVKFDNNYYKNLLANKGLLSSDEILLTKNQVSADLVKKYAESNDLFFEQFAKSMVKMGNITPLTGSRGEIRKRCRKINN*